=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdYD1Gc7/inputs/cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.buildinfo Source: cctbx Version: 2026.4+ds2+~3.28.0+ds1-2 rebuilderd-worker node: loong64-01 +------------------------------------------------------------------------------+ | Downloading sources Tue, 16 Jun 2026 00:57:04 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.6 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [189 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:12 https://deb.debian.org/debian-security trixie-security/main Sources [177 kB] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [2,788 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [88.3 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,376 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [268 kB] Get:17 https://deb.debian.org/debian forky/main Sources [10.9 MB] Get:18 https://deb.debian.org/debian forky/non-free-firmware Sources [8,528 B] Get:19 https://deb.debian.org/debian sid/main Sources [11.6 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.8 kB] Get:21 https://deb.debian.org/debian experimental/main Sources [397 kB] Get:22 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Fetched 34.7 MB in 12s (2,898 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.4%2bds2%2b%7e3.28.0%2bds1-2.dsc' cctbx_2026.4+ds2+~3.28.0+ds1-2.dsc 4152 SHA256:204a88481a117fe8c49d115a83025bda73f0480a198896cbfc536284ba14217b 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.4%2bds2%2b%7e3.28.0%2bds1.orig-dxtbx.tar.xz' cctbx_2026.4+ds2+~3.28.0+ds1.orig-dxtbx.tar.xz 389428 SHA256:4625660418c42cc98744fd97074c7c1f26439a999662b7fddf382e0cc4304940 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.4%2bds2%2b%7e3.28.0%2bds1.orig.tar.xz' cctbx_2026.4+ds2+~3.28.0+ds1.orig.tar.xz 104764504 SHA256:cd34f3a526d15c3dff4cc4d71eb422e4d1a7db6b6d7dd5a58bf77ac335accb63 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.4%2bds2%2b%7e3.28.0%2bds1-2.debian.tar.xz' cctbx_2026.4+ds2+~3.28.0+ds1-2.debian.tar.xz 420028 SHA256:b206ac624b799af58a32d092535caf017f89b784f29c2329af02ecd127d24a18 4625660418c42cc98744fd97074c7c1f26439a999662b7fddf382e0cc4304940 cctbx_2026.4+ds2+~3.28.0+ds1.orig-dxtbx.tar.xz cd34f3a526d15c3dff4cc4d71eb422e4d1a7db6b6d7dd5a58bf77ac335accb63 cctbx_2026.4+ds2+~3.28.0+ds1.orig.tar.xz b206ac624b799af58a32d092535caf017f89b784f29c2329af02ecd127d24a18 cctbx_2026.4+ds2+~3.28.0+ds1-2.debian.tar.xz 204a88481a117fe8c49d115a83025bda73f0480a198896cbfc536284ba14217b cctbx_2026.4+ds2+~3.28.0+ds1-2.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Tue, 16 Jun 2026 00:57:27 +0000 | +------------------------------------------------------------------------------+ Rebuilding cctbx=2026.4+ds2+~3.28.0+ds1-2 in /srv/rebuilderd/tmp/rebuilderdYD1Gc7/inputs now. + nice /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdYD1Gc7/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdYD1Gc7/inputs/cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.buildinfo /srv/rebuilderd/tmp/rebuilderdYD1Gc7/inputs/cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [189 kB] Get:2 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable InRelease [189 kB] Get:3 http://snapshot.debian.org/archive/debian/20260604T082513Z unstable InRelease [189 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 Packages [10.1 MB] Get:5 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 Packages [9933 kB] Ign:5 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 Packages Get:6 http://snapshot.debian.org/archive/debian/20260604T082513Z unstable/main loong64 Packages [10.0 MB] Get:5 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 Packages [9933 kB] Fetched 30.6 MB in 18s (1698 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20260506T205057Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted W: http://snapshot.debian.org/archive/debian/20260604T082513Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libkadm5clnt-mit12 loong64 1.22.1-2+b1 [42.5 kB] Fetched 42.5 kB in 0s (138 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6pvxcs9i/libkadm5clnt-mit12_1.22.1-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-regex1.90-dev loong64 1.90.0-6 [765 kB] Fetched 765 kB in 0s (43.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppj4h4w64/libboost-regex1.90-dev_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpangocairo-1.0-0 loong64 1.57.1-2 [33.2 kB] Fetched 33.2 kB in 0s (217 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp56hv6zdz/libpangocairo-1.0-0_1.57.1-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libzstd1 loong64 1.5.7+dfsg-3+b2 [287 kB] Fetched 287 kB in 1s (490 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyd31fgjv/libzstd1_1.5.7+dfsg-3+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgtk-3-0t64 loong64 3.24.52-1 [2860 kB] Fetched 2860 kB in 0s (47.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5kuqx3tr/libgtk-3-0t64_3.24.52-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 gcc-15-loongarch64-linux-gnu loong64 15.2.0-17 [19.3 MB] Fetched 19.3 MB in 3s (6906 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp21ki0y45/gcc-15-loongarch64-linux-gnu_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 procps loong64 2:4.0.4-9+b2 [876 kB] Fetched 876 kB in 1s (1557 kB/s) dpkg-name: info: moved 'procps_2%3a4.0.4-9+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmprg_pyb4j/procps_4.0.4-9+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblz4-dev loong64 1.10.0-10 [263 kB] Fetched 263 kB in 0s (639 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphl8u89h5/liblz4-dev_1.10.0-10_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libudev1 loong64 260.1-1 [131 kB] Fetched 131 kB in 0s (470 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5tz9acpa/libudev1_260.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 perl loong64 5.40.1-7+b1 [268 kB] Fetched 268 kB in 1s (365 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3iw1f52j/perl_5.40.1-7+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpopt0 loong64 1.19+dfsg-2+b2 [44.4 kB] Fetched 44.4 kB in 0s (925 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0uxwnbng/libpopt0_1.19+dfsg-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-legacy-cgi all 2.6.4-2 [16.9 kB] Fetched 16.9 kB in 0s (42.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl0k9_v4g/python3-legacy-cgi_2.6.4-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgl1 loong64 1.7.0-3+b1 [106 kB] Fetched 106 kB in 0s (726 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppzt5t9d8/libgl1_1.7.0-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpangoft2-1.0-0 loong64 1.57.1-2 [51.3 kB] Fetched 51.3 kB in 0s (380 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpod7n8tq2/libpangoft2-1.0-0_1.57.1-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libtsan2 loong64 16-20260425-1 [2505 kB] Fetched 2505 kB in 1s (2647 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpznm3rsz8/libtsan2_16-20260425-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 w3c-sgml-lib all 1.3-3 [273 kB] Fetched 273 kB in 0s (690 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp4fiexrd/w3c-sgml-lib_1.3-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblcms2-2 loong64 2.19.1-1 [168 kB] Fetched 168 kB in 0s (943 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb_xc95mj/liblcms2-2_2.19.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgdbm-compat4t64 loong64 1.26-1+b2 [52.1 kB] Fetched 52.1 kB in 0s (307 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprtw16n9j/libgdbm-compat4t64_1.26-1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libssl-dev loong64 3.6.2-1 [5977 kB] Fetched 5977 kB in 1s (9093 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbkbnnva1/libssl-dev_3.6.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpsl5t64 loong64 0.21.5-1 [60.3 kB] Fetched 60.3 kB in 0s (675 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp55smkgqr/libpsl5t64_0.21.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-brotli loong64 1.2.0-3 [327 kB] Fetched 327 kB in 1s (386 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxmktmmg1/python3-brotli_1.2.0-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-installer all 1.0.0+dfsg1-1 [19.4 kB] Fetched 19.4 kB in 0s (146 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3awxcqjw/python3-installer_1.0.0+dfsg1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-dateutil all 2.9.0-4 [79.4 kB] Fetched 79.4 kB in 0s (171 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_0wn08mm/python3-dateutil_2.9.0-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-charset-normalizer loong64 3.4.7-1 [239 kB] Fetched 239 kB in 1s (380 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6321pjqw/python3-charset-normalizer_3.4.7-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3.14-dev loong64 3.14.5~rc1-1 [509 kB] Fetched 509 kB in 0s (1329 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptxrg66tw/python3.14-dev_3.14.5~rc1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpcre2-16-0 loong64 10.46-1+b2 [275 kB] Fetched 275 kB in 0s (975 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoq_e4zfa/libpcre2-16-0_10.46-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcom-err2 loong64 1.47.4-1 [19.1 kB] Fetched 19.1 kB in 0s (1431 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxk6qj5_1/libcom-err2_1.47.4-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxss1 loong64 1:1.2.3-1+b4 [17.3 kB] Fetched 17.3 kB in 0s (166 kB/s) dpkg-name: info: moved 'libxss1_1%3a1.2.3-1+b4_loong64.deb' to '/srv/rebuilderd/tmp/tmptx8hgwpw/libxss1_1.2.3-1+b4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Fetched 11.7 kB in 0s (107 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp66fsw_xc/python3-pyproject-hooks_1.2.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-numpy-dev loong64 1.90.0.2 [2900 B] Fetched 2900 B in 0s (10.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl_2i58aj/libboost-numpy-dev_1.90.0.2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libccp4-data all 8.0.0-5 [62.5 kB] Fetched 62.5 kB in 1s (49.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp21loltyk/libccp4-data_8.0.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 dbus-system-bus-common all 1.16.2-4 [54.1 kB] Fetched 54.1 kB in 0s (3059 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptlc3yt1o/dbus-system-bus-common_1.16.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pymol loong64 3.1.0+dfsg-1+b1 [6865 kB] Fetched 6865 kB in 3s (2021 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphaz24b7p/python3-pymol_3.1.0+dfsg-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libfftw3-bin loong64 3.3.10-2+b2 [44.4 kB] Fetched 44.4 kB in 0s (197 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6m6mg677/libfftw3-bin_3.3.10-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 jq loong64 1.8.1-5 [84.5 kB] Fetched 84.5 kB in 1s (168 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7xpa3fyf/jq_1.8.1-5_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgcrypt20 loong64 1.12.2-1 [796 kB] Fetched 796 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp27395zxh/libgcrypt20_1.12.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libproc2-0 loong64 2:4.0.4-9+b2 [63.6 kB] Fetched 63.6 kB in 0s (1670 kB/s) dpkg-name: info: moved 'libproc2-0_2%3a4.0.4-9+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpwpd0dqz1/libproc2-0_4.0.4-9+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Fetched 224 kB in 0s (1525 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvtjqjsy0/python3-pkg-resources_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libexpat1 loong64 2.8.0-1 [114 kB] Fetched 114 kB in 0s (381 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp05sdur65/libexpat1_2.8.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5sql5t64 loong64 5.15.17+dfsg-8 [121 kB] Fetched 121 kB in 0s (2325 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwfcs6ctn/libqt5sql5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-hatchling all 1.29.0-1 [46.9 kB] Fetched 46.9 kB in 1s (74.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuqjw8w9q/python3-hatchling_1.29.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmunge2 loong64 0.5.18-1 [19.0 kB] Fetched 19.0 kB in 1s (14.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3typ9ppm/libmunge2_0.5.18-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcairo2 loong64 1.18.4-3+b1 [530 kB] Fetched 530 kB in 0s (2218 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1nf40u5m/libcairo2_1.18.4-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblapack3 loong64 3.12.1-7+b2 [1887 kB] Fetched 1887 kB in 1s (2780 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4qf7500l/liblapack3_3.12.1-7+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcap-ng0 loong64 0.9.3-1 [18.2 kB] Fetched 18.2 kB in 0s (52.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_yrqgbi/libcap-ng0_0.9.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 librtmp-dev loong64 2.6-1 [126 kB] Fetched 126 kB in 0s (743 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq0uld9g5/librtmp-dev_2.6-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 g++ loong64 4:15.2.0-5+b1 [1340 B] Fetched 1340 B in 0s (3480 B/s) dpkg-name: info: moved 'g++_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpmcaonsec/g++_15.2.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libavahi-common3 loong64 0.8-18 [44.7 kB] Fetched 44.7 kB in 0s (2443 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe5c5jwed/libavahi-common3_0.8-18_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libzopfli1 loong64 1.0.3-3+b1 [102 kB] Fetched 102 kB in 0s (1491 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7utnpfse/libzopfli1_1.0.3-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-dev loong64 1.90.0.2 [3068 B] Fetched 3068 B in 0s (7378 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptlz4rnvl/libboost-dev_1.90.0.2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsharpyuv0 loong64 1.5.0-0.1+b2 [114 kB] Fetched 114 kB in 0s (7950 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbugdb5r8/libsharpyuv0_1.5.0-0.1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libidn2-dev loong64 2.3.8-4+b2 [138 kB] Fetched 138 kB in 0s (953 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp98dyfywl/libidn2-dev_2.3.8-4+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 readline-common all 8.3-4 [74.8 kB] Fetched 74.8 kB in 0s (273 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplmvc5eta/readline-common_8.3-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhdf5-310 loong64 1.14.6+repack-2+b1 [1195 kB] Fetched 1195 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp83i3i3ou/libhdf5-310_1.14.6+repack-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libsqlite3-0 loong64 3.46.1-9+b1 [906 kB] Fetched 906 kB in 0s (5078 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaqacej98/libsqlite3-0_3.46.1-9+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libdrm-common all 2.4.131-1 [9168 B] Fetched 9168 B in 0s (18.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9bb623kx/libdrm-common_2.4.131-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libthai0 loong64 0.1.30-1+b1 [52.2 kB] Fetched 52.2 kB in 0s (408 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5o3pkmwo/libthai0_0.1.30-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnetcdf22 loong64 1:4.10.0-1 [518 kB] Fetched 518 kB in 0s (2020 kB/s) dpkg-name: info: moved 'libnetcdf22_1%3a4.10.0-1_loong64.deb' to '/srv/rebuilderd/tmp/tmp5dsss91m/libnetcdf22_4.10.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtasn1-6 loong64 4.21.0-2+b1 [50.2 kB] Fetched 50.2 kB in 0s (163 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp17zn6xbk/libtasn1-6_4.21.0-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 ocl-icd-libopencl1 loong64 2.3.4-1+b1 [41.5 kB] Fetched 41.5 kB in 0s (142 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzdrbipvx/ocl-icd-libopencl1_2.3.4-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-natsort all 8.4.0-2 [39.0 kB] Fetched 39.0 kB in 0s (160 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdbi7z5vg/python3-natsort_8.4.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-msgpack loong64 1.1.2-2 [104 kB] Fetched 104 kB in 0s (649 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4gwszzpi/python3-msgpack_1.1.2-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libeigen3-dev all 3.4.0-5 [1034 kB] Fetched 1034 kB in 0s (5803 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmgn10c2w/libeigen3-dev_3.4.0-5_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libsdl3-0 loong64 3.4.8+ds-1 [1015 kB] Fetched 1015 kB in 0s (6161 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiwv0fd8a/libsdl3-0_3.4.8+ds-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libldap2 loong64 2.6.10+dfsg-1+b2 [189 kB] Fetched 189 kB in 0s (1556 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprm6qt2z9/libldap2_2.6.10+dfsg-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libx11-xcb1 loong64 2:1.8.13-1 [250 kB] Fetched 250 kB in 0s (3299 kB/s) dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.13-1_loong64.deb' to '/srv/rebuilderd/tmp/tmphzajo4pt/libx11-xcb1_1.8.13-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libinput-bin loong64 1.31.1-1 [27.9 kB] Fetched 27.9 kB in 0s (787 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp984yj6da/libinput-bin_1.31.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gzip loong64 1.13-1+b1 [137 kB] Fetched 137 kB in 0s (5214 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvm4rlj3j/gzip_1.13-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgdk-pixbuf-2.0-0 loong64 2.44.6+dfsg-2 [94.8 kB] Fetched 94.8 kB in 0s (7606 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp85btf63j/libgdk-pixbuf-2.0-0_2.44.6+dfsg-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpam-modules loong64 1.7.0-5+b2 [176 kB] Fetched 176 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxquouw9u/libpam-modules_1.7.0-5+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 mesa-libgallium loong64 26.0.6-1 [9211 kB] Fetched 9211 kB in 0s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqj33n7ka/mesa-libgallium_26.0.6-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libngtcp2-crypto-gnutls8 loong64 1.22.1-1 [20.3 kB] Fetched 20.3 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwbko9ncn/libngtcp2-crypto-gnutls8_1.22.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 xml-core all 0.20 [20.0 kB] Fetched 20.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqgvf5usb/xml-core_0.20_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-wxgtk4.0 loong64 4.2.4+dfsg-1+b1 [9890 kB] Fetched 9890 kB in 0s (96.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp__eg2ye4/python3-wxgtk4.0_4.2.4+dfsg-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsasl2-2 loong64 2.1.28+dfsg1-11 [56.7 kB] Fetched 56.7 kB in 0s (3533 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzwomd47o/libsasl2-2_2.1.28+dfsg1-11_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fonts-lato all 2.015-1 [2780 kB] Fetched 2780 kB in 0s (84.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplfx_epud/fonts-lato_2.015-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sfftw-dev loong64 2.1.5-8 [299 kB] Fetched 299 kB in 0s (22.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnuaf_dlg/sfftw-dev_2.1.5-8_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libopengl-dev loong64 1.7.0-3+b1 [4580 B] Fetched 4580 B in 0s (455 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1m74qpu6/libopengl-dev_1.7.0-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-autocommand all 2.2.2-4 [13.7 kB] Fetched 13.7 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5q_bo52/python3-autocommand_2.2.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sfftw2 loong64 2.1.5-8 [211 kB] Fetched 211 kB in 0s (17.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg_fk24cc/sfftw2_2.1.5-8_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libmagic1t64 loong64 1:5.46-5+b2 [111 kB] Fetched 111 kB in 0s (10.1 MB/s) dpkg-name: info: moved 'libmagic1t64_1%3a5.46-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpfwtw2ltt/libmagic1t64_5.46-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libann-cctbx-dev loong64 1.1.2+doc-9+b1 [83.4 kB] Fetched 83.4 kB in 1s (140 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3csvehog/libann-cctbx-dev_1.1.2+doc-9+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libabsl20260107 loong64 20260107.0-5 [529 kB] Fetched 529 kB in 0s (36.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjqq4ajkt/libabsl20260107_20260107.0-5_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libitm1 loong64 16-20260425-1 [24.9 kB] Fetched 24.9 kB in 0s (2435 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfywr5if2/libitm1_16-20260425-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pycbf loong64 0.9.7+dfsg1-5.1+b1 [190 kB] Fetched 190 kB in 0s (470 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps3jlqj4p/python3-pycbf_0.9.7+dfsg1-5.1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3.13-tk loong64 3.13.12-1 [108 kB] Fetched 108 kB in 0s (6231 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1u7x6vp0/python3.13-tk_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-hdf5plugin all 5.1.0-1 [27.1 kB] Fetched 27.1 kB in 0s (2613 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfvts8i9m/python3-hdf5plugin_5.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fonts-dejavu-extra all 2.37-9 [1791 kB] Fetched 1791 kB in 0s (70.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0wtpov0r/fonts-dejavu-extra_2.37-9_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sed loong64 4.9-3 [330 kB] Fetched 330 kB in 0s (24.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9tqfye6j/sed_4.9-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdatrie1 loong64 0.2.14-1+b1 [40.1 kB] Fetched 40.1 kB in 0s (3779 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1i8_n1e8/libdatrie1_0.2.14-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dconf-gsettings-backend loong64 0.49.0-4+b1 [28.8 kB] Fetched 28.8 kB in 0s (2836 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb45ou70z/dconf-gsettings-backend_0.49.0-4+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcairo-gobject2 loong64 1.18.4-3+b1 [129 kB] Fetched 129 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjq91kd6h/libcairo-gobject2_1.18.4-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libkadm5srv-mit12 loong64 1.22.1-2+b1 [57.1 kB] Fetched 57.1 kB in 0s (5309 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7vs3ioan/libkadm5srv-mit12_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libsystemd-shared loong64 260.1-1 [2270 kB] Fetched 2270 kB in 0s (77.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3kf8val8/libsystemd-shared_260.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3.14-tk loong64 3.14.5~rc1-1 [104 kB] Fetched 104 kB in 0s (9521 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq_kkjnok/python3.14-tk_3.14.5~rc1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 file loong64 1:5.46-5+b2 [42.8 kB] Fetched 42.8 kB in 0s (3085 kB/s) dpkg-name: info: moved 'file_1%3a5.46-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpxckkhv5q/file_5.46-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgtk-3-common all 3.24.52-1 [4929 kB] Fetched 4929 kB in 0s (97.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp99tq67op/libgtk-3-common_3.24.52-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3-dev loong64 3.13.9-3+b1 [8584 B] Fetched 8584 B in 0s (850 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0g4n6k_e/libpython3-dev_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsvtav1enc4 loong64 4.1.0+dfsg-1 [1138 kB] Fetched 1138 kB in 0s (56.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpenal_hzu/libsvtav1enc4_4.1.0+dfsg-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 bubblewrap loong64 0.11.2-1 [51.3 kB] Fetched 51.3 kB in 0s (4960 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyws8t1sn/bubblewrap_0.11.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libde265-0 loong64 1.0.18-1 [163 kB] Fetched 163 kB in 0s (14.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9cf2493o/libde265-0_1.0.18-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libasound2t64 loong64 1.2.15.3-1+b1 [383 kB] Fetched 383 kB in 0s (20.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpne3gbecw/libasound2t64_1.2.15.3-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwebp-dev loong64 1.5.0-0.1+b2 [803 kB] Fetched 803 kB in 0s (45.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm96j5fcr/libwebp-dev_1.5.0-0.1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-all-dev loong64 3.13.9-3+b1 [1084 B] Fetched 1084 B in 0s (31.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2d4d9ltx/python3-all-dev_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmpfr6 loong64 4.2.2-3 [664 kB] Fetched 664 kB in 0s (39.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0swzd5kk/libmpfr6_4.2.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpam-modules-bin loong64 1.7.0-5+b2 [45.7 kB] Fetched 45.7 kB in 0s (478 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzfz8ednb/libpam-modules-bin_1.7.0-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-test1.90-dev loong64 1.90.0-6 [3602 kB] Fetched 3602 kB in 0s (36.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu6y3cycv/libboost-test1.90-dev_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 ibverbs-providers loong64 63.0-1 [384 kB] Fetched 384 kB in 0s (4971 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj3rnhssf/ibverbs-providers_63.0-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 rpcsvc-proto loong64 1.4.3-1+b1 [61.0 kB] Fetched 61.0 kB in 0s (834 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8cji9b6c/rpcsvc-proto_1.4.3-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Fetched 8812 B in 0s (639 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbll5i36w/dh-strip-nondeterminism_1.15.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-setuptools all 78.1.1-0.1 [738 kB] Fetched 738 kB in 0s (44.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiefjs6f6/python3-setuptools_78.1.1-0.1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libkrb5support0 loong64 1.22.1-2+b1 [33.8 kB] Fetched 33.8 kB in 0s (356 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpucsftyis/libkrb5support0_1.22.1-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libngtcp2-dev loong64 1.22.1-1 [424 kB] Fetched 424 kB in 0s (29.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7yqovgdy/libngtcp2-dev_1.22.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgnutls-dane0t64 loong64 3.8.13-1 [495 kB] Fetched 495 kB in 0s (26.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcue0yn82/libgnutls-dane0t64_3.8.13-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libperl5.40 loong64 5.40.1-7+b1 [4310 kB] Fetched 4310 kB in 0s (84.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqpoodagp/libperl5.40_5.40.1-7+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 pybuild-plugin-pyproject all 7.20260309 [6752 B] Fetched 6752 B in 0s (563 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8cmzhbwf/pybuild-plugin-pyproject_7.20260309_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-procrunner all 2.3.3-2 [13.9 kB] Fetched 13.9 kB in 0s (61.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxr1dpw69/python3-procrunner_2.3.3-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libevdev2 loong64 1.13.6+dfsg-2 [31.0 kB] Fetched 31.0 kB in 0s (2832 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp446ytjcr/libevdev2_1.13.6+dfsg-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-keysyms1 loong64 0.4.1-1+b2 [17.2 kB] Fetched 17.2 kB in 0s (1122 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6xzjh917/libxcb-keysyms1_0.4.1-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 coreutils loong64 9.10-1 [3128 kB] Fetched 3128 kB in 0s (86.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjg7_ktkj/coreutils_9.10-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgmp-dev loong64 2:6.3.0+dfsg-5+b2 [1083 kB] Fetched 1083 kB in 0s (56.8 MB/s) dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpmw3e3a57/libgmp-dev_6.3.0+dfsg-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libvorbisenc2 loong64 1.3.7-3+b2 [76.0 kB] Fetched 76.0 kB in 0s (7027 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptje4o1y9/libvorbisenc2_1.3.7-3+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libjs-sphinxdoc all 9.1.0-2 [25.2 kB] Fetched 25.2 kB in 0s (2449 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpazbv8w8p/libjs-sphinxdoc_9.1.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libopenjp2-7 loong64 2.5.4-1.1 [204 kB] Fetched 204 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy0p1emxp/libopenjp2-7_2.5.4-1.1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgdk-pixbuf2.0-common all 2.44.6+dfsg-2 [313 kB] Fetched 313 kB in 0s (24.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzul1b4rr/libgdk-pixbuf2.0-common_2.44.6+dfsg-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwacom9 loong64 2.18.0-1 [26.4 kB] Fetched 26.4 kB in 0s (2595 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprjf5aw3e/libwacom9_2.18.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libssm2 loong64 1.4.0-2+b4 [80.7 kB] Fetched 80.7 kB in 1s (120 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppqeuprjc/libssm2_1.4.0-2+b4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 g++-15 loong64 15.2.0-17 [28.0 kB] Fetched 28.0 kB in 0s (2627 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg7n7xwle/g++-15_15.2.0-17_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 autoconf all 2.72-6 [494 kB] Fetched 494 kB in 0s (24.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa7umaex0/autoconf_2.72-6_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sensible-utils all 0.0.26 [27.0 kB] Fetched 27.0 kB in 0s (2584 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwrguo46x/sensible-utils_0.0.26_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libdeflate-dev loong64 1.23-2+b2 [82.9 kB] Fetched 82.9 kB in 0s (7970 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpotl6snpt/libdeflate-dev_1.23-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmpc3 loong64 1.3.1-3 [56.2 kB] Fetched 56.2 kB in 0s (4981 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn3jorepg/libmpc3_1.3.1-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5core5t64 loong64 5.15.17+dfsg-8 [1900 kB] Fetched 1900 kB in 0s (74.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89bu74zp/libqt5core5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Fetched 60.0 kB in 0s (5770 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp1ym1yjr/autotools-dev_20240727.1+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libffi8 loong64 3.5.2-4 [22.4 kB] Fetched 22.4 kB in 0s (2199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4eq8z303/libffi8_3.5.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libopenmpi40 loong64 5.0.10-1 [1852 kB] Fetched 1852 kB in 0s (62.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsrqm3iwf/libopenmpi40_5.0.10-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwebpmux3 loong64 1.5.0-0.1+b2 [126 kB] Fetched 126 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp803x4em_/libwebpmux3_1.5.0-0.1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fonts-dejavu-core all 2.37-9 [840 kB] Fetched 840 kB in 0s (49.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2solefvv/fonts-dejavu-core_2.37-9_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-numpy loong64 1:2.4.4+ds-2 [4446 kB] Fetched 4446 kB in 0s (86.3 MB/s) dpkg-name: info: moved 'python3-numpy_1%3a2.4.4+ds-2_loong64.deb' to '/srv/rebuilderd/tmp/tmpwacd9yj5/python3-numpy_2.4.4+ds-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5xml5t64 loong64 5.15.17+dfsg-8 [121 kB] Fetched 121 kB in 0s (7958 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuidcn2y4/libqt5xml5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-xkb1 loong64 1.17.0-2+b2 [129 kB] Fetched 129 kB in 0s (11.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp15dwo_i5/libxcb-xkb1_1.17.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 nettle-dev loong64 3.10.2-1+b1 [1501 kB] Fetched 1501 kB in 0s (67.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1f5_w4tz/nettle-dev_3.10.2-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libglib2.0-0t64 loong64 2.88.1-2 [1520 kB] Fetched 1520 kB in 0s (55.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjrjqrss2/libglib2.0-0t64_2.88.1-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libc-gconv-modules-extra loong64 2.42-15 [1156 kB] Fetched 1156 kB in 0s (59.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2jq8l2wt/libc-gconv-modules-extra_2.42-15_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-platformdirs all 4.9.6-1 [17.3 kB] Fetched 17.3 kB in 0s (1617 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcrhau9ba/python3-platformdirs_4.9.6-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pyqt5.qtopengl loong64 5.15.11+dfsg-4 [212 kB] Fetched 212 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpczd2ctms/python3-pyqt5.qtopengl_5.15.11+dfsg-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpixman-1-0 loong64 0.46.4-1+b2 [163 kB] Fetched 163 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbliposkw/libpixman-1-0_0.46.4-1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libicu78 loong64 78.3-1 [9982 kB] Fetched 9982 kB in 0s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp18lzojkd/libicu78_78.3-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libdebconfclient0 loong64 0.282+b3 [7800 B] Fetched 7800 B in 0s (533 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqbcz8w3/libdebconfclient0_0.282+b3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libdrm2 loong64 2.4.131-1+b1 [39.5 kB] Fetched 39.5 kB in 0s (2745 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiyb6xzwx/libdrm2_2.4.131-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libdeflate0 loong64 1.23-2+b2 [36.3 kB] Fetched 36.3 kB in 0s (2696 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_903ajz8/libdeflate0_1.23-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libkdb5-10t64 loong64 1.22.1-2+b1 [44.8 kB] Fetched 44.8 kB in 0s (4272 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8w91ejzq/libkdb5-10t64_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libaec0 loong64 1.1.6-1 [22.6 kB] Fetched 22.6 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5xf7zgjk/libaec0_1.1.6-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 debconf all 1.5.92 [123 kB] Fetched 123 kB in 0s (8232 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw0c3zwaw/debconf_1.5.92_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxrender1 loong64 1:0.9.12-1+b2 [28.4 kB] Fetched 28.4 kB in 0s (2081 kB/s) dpkg-name: info: moved 'libxrender1_1%3a0.9.12-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpvqxaewmd/libxrender1_0.9.12-1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 krb5-multidev loong64 1.22.1-2+b1 [127 kB] Fetched 127 kB in 0s (11.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr3isr9_u/krb5-multidev_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libidn2-0 loong64 2.3.8-4+b2 [108 kB] Fetched 108 kB in 0s (7365 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5nif_6mf/libidn2-0_2.3.8-4+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 cpp loong64 4:15.2.0-5+b1 [1580 B] Fetched 1580 B in 0s (0 B/s) dpkg-name: info: moved 'cpp_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpgy31u9jo/cpp_15.2.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libjbig0 loong64 2.1-6.1+b3 [31.9 kB] Fetched 31.9 kB in 0s (361 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphbx33ktz/libjbig0_2.1-6.1+b3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libccp4-dev loong64 8.0.0-5+b1 [42.7 kB] Fetched 42.7 kB in 0s (153 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvnll2jnb/libccp4-dev_8.0.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb1-dev loong64 1.17.0-2+b2 [250 kB] Fetched 250 kB in 0s (4944 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprirgqa0b/libxcb1-dev_1.17.0-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libexpat1-dev loong64 2.8.0-1 [342 kB] Fetched 342 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpztzy77tp/libexpat1-dev_2.8.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Fetched 577 kB in 0s (20.7 MB/s) dpkg-name: info: moved 'xfonts-encodings_1%3a1.0.4-2.2_all.deb' to '/srv/rebuilderd/tmp/tmpmqtk6akm/xfonts-encodings_1.0.4-2.2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libasyncns0 loong64 0.8-7+b2 [12.4 kB] Fetched 12.4 kB in 0s (1178 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2qf0266i/libasyncns0_0.8-7+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 architecture-properties loong64 0.2.6+b2 [2640 B] Fetched 2640 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5ct__wx7/architecture-properties_0.2.6+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libglew2.3 loong64 2.3.1-6 [164 kB] Fetched 164 kB in 0s (6673 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpg0t0wmxz/libglew2.3_2.3.1-6_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3.14 loong64 3.14.5~rc1-1 [841 kB] Fetched 841 kB in 0s (49.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwkaohlg7/python3.14_3.14.5~rc1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 media-types all 14.0.0 [30.8 kB] Fetched 30.8 kB in 0s (2973 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpngohxtej/media-types_14.0.0_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3 loong64 3.13.9-3+b1 [25.4 kB] Fetched 25.4 kB in 0s (1834 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprxzxnoqo/python3_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Fetched 319 kB in 0s (24.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf193xp3_/libjs-jquery_3.7.1+dfsg+~3.5.33-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgraphite2-3 loong64 1.3.14-13 [73.8 kB] Fetched 73.8 kB in 0s (6440 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpik3iflvl/libgraphite2-3_1.3.14-13_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 dbus-bin loong64 1.16.2-4 [79.9 kB] Fetched 79.9 kB in 0s (4644 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1ctwq1f5/dbus-bin_1.16.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-freetype all 2.5.1-2 [89.4 kB] Fetched 89.4 kB in 0s (8128 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89v_pbvz/python3-freetype_2.5.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fontconfig loong64 2.17.1-5 [191 kB] Fetched 191 kB in 0s (5260 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe4kwhmxw/fontconfig_2.17.1-5_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 zlib1g loong64 1:1.3.dfsg+really1.3.2-3 [87.8 kB] Fetched 87.8 kB in 1s (73.1 kB/s) dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpcdp30mk_/zlib1g_1.3.dfsg+really1.3.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libisl23 loong64 0.27-2 [667 kB] Fetched 667 kB in 0s (4759 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpboxkkhrn/libisl23_0.27-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libuchardet0 loong64 0.0.8-2+b2 [69.9 kB] Fetched 69.9 kB in 0s (6405 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp51lzbuqt/libuchardet0_0.0.8-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-xinput0 loong64 1.17.0-2+b2 [129 kB] Fetched 129 kB in 0s (7682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_jr8azgv/libxcb-xinput0_1.17.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpipeline1 loong64 1.5.8-3 [48.6 kB] Fetched 48.6 kB in 0s (4433 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1arhcwvi/libpipeline1_1.5.8-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-h5py all 3.16.0-2 [14.6 kB] Fetched 14.6 kB in 0s (548 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpodf5v3bs/python3-h5py_3.16.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libx11-6 loong64 2:1.8.13-1 [822 kB] Fetched 822 kB in 0s (2432 kB/s) dpkg-name: info: moved 'libx11-6_2%3a1.8.13-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpksqdh03x/libx11-6_1.8.13-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libbrotli-dev loong64 1.2.0-3 [815 kB] Fetched 815 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmgul7rzu/libbrotli-dev_1.2.0-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libpython3.13-dev loong64 3.13.12-1 [16.5 MB] Fetched 16.5 MB in 1s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiobeya7_/libpython3.13-dev_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dconf-service loong64 0.49.0-4+b1 [32.4 kB] Fetched 32.4 kB in 1s (52.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdhwiomcj/dconf-service_0.49.0-4+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-container1.90.0 loong64 1.90.0-6 [251 kB] Fetched 251 kB in 1s (302 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9f5pvjkx/libboost-container1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtiffxx6 loong64 4.7.1-2 [171 kB] Fetched 171 kB in 0s (2308 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3988yghc/libtiffxx6_4.7.1-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 base-files loong64 14+b1 [73.2 kB] Fetched 73.2 kB in 1s (64.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvl4wyykd/base-files_14+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libsystemd0 loong64 260.1-1 [443 kB] Fetched 443 kB in 0s (8281 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyqhkn0qo/libsystemd0_260.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb1 loong64 1.17.0-2+b2 [144 kB] Fetched 144 kB in 1s (236 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3cokyvns/libxcb1_1.17.0-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libpython3.14 loong64 3.14.5~rc1-1 [2319 kB] Fetched 2319 kB in 0s (28.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc4pwoj9o/libpython3.14_3.14.5~rc1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libucx0 loong64 1.20.1~rc2-1 [860 kB] Fetched 860 kB in 0s (4461 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmputcdp0qc/libucx0_1.20.1~rc2-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-packaging all 26.0-1 [64.3 kB] Fetched 64.3 kB in 0s (278 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeuehb92g/python3-packaging_26.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-date-time1.90.0 loong64 1.90.0-6 [222 kB] Fetched 222 kB in 0s (14.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3fvqilke/libboost-date-time1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpciaccess0 loong64 0.17-3+b4 [51.4 kB] Fetched 51.4 kB in 0s (505 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpod4urawd/libpciaccess0_0.17-3+b4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-typeguard all 4.4.4-2 [37.2 kB] Fetched 37.2 kB in 0s (525 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpegy7z67x/python3-typeguard_4.4.4-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libselinux1 loong64 3.10-1 [85.3 kB] Fetched 85.3 kB in 0s (395 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaaqlbixf/libselinux1_3.10-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxext6 loong64 2:1.3.4-1+b4 [51.4 kB] Fetched 51.4 kB in 0s (254 kB/s) dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b4_loong64.deb' to '/srv/rebuilderd/tmp/tmp1jdewagg/libxext6_1.3.4-1+b4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 m4 loong64 1.4.21-1 [332 kB] Fetched 332 kB in 0s (8441 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfhrrfz1t/m4_1.4.21-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dpkg loong64 1.23.7 [1527 kB] Fetched 1527 kB in 0s (4909 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk1r7ztnm/dpkg_1.23.7_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libseccomp2 loong64 2.6.0-2+b1 [52.0 kB] Fetched 52.0 kB in 0s (192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_eizi_ey/libseccomp2_2.6.0-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libcurl3t64-gnutls loong64 8.20.0-1 [405 kB] Fetched 405 kB in 0s (2682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_4wwefl2/libcurl3t64-gnutls_8.20.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-icccm4 loong64 0.4.2-1+b2 [27.5 kB] Fetched 27.5 kB in 0s (242 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp3ewf9w6/libxcb-icccm4_0.4.2-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 xkb-data all 2.47-1 [835 kB] Fetched 835 kB in 0s (3494 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu42pfgxb/xkb-data_2.47-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdav1d7 loong64 1.5.3-1+b2 [269 kB] Fetched 269 kB in 1s (438 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpird0l571/libdav1d7_1.5.3-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsm6 loong64 2:1.2.6-1+b2 [37.8 kB] Fetched 37.8 kB in 0s (193 kB/s) dpkg-name: info: moved 'libsm6_2%3a1.2.6-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmp2w3gyunw/libsm6_1.2.6-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 comerr-dev loong64 2.1-1.47.4-1 [54.5 kB] Fetched 54.5 kB in 0s (218 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplz3ot4_c/comerr-dev_2.1-1.47.4-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 shared-mime-info loong64 2.4-5+b2 [755 kB] Fetched 755 kB in 1s (1046 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8qb11rob/shared-mime-info_2.4-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-regex1.90.0 loong64 1.90.0-6 [320 kB] Fetched 320 kB in 0s (16.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9gffs9tb/libboost-regex1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxshmfence1 loong64 1.3.3-1+b2 [11.3 kB] Fetched 11.3 kB in 1s (12.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi8ybjusk/libxshmfence1_1.3.3-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pyqt5 loong64 5.15.11+dfsg-4 [2492 kB] Fetched 2492 kB in 1s (3048 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbqsf778p/python3-pyqt5_5.15.11+dfsg-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libbz2-1.0 loong64 1.0.8-6+b2 [39.8 kB] Fetched 39.8 kB in 0s (195 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe8eqvyfb/libbz2-1.0_1.0.8-6+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcomposite1 loong64 1:0.4.6-1+b2 [16.9 kB] Fetched 16.9 kB in 0s (75.4 kB/s) dpkg-name: info: moved 'libxcomposite1_1%3a0.4.6-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpqj8w88m1/libxcomposite1_0.4.6-1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libkrb5-dev loong64 1.22.1-2+b1 [16.4 kB] Fetched 16.4 kB in 0s (42.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5f2wtqjo/libkrb5-dev_1.22.1-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-render-util0 loong64 0.3.10-1+b2 [18.7 kB] Fetched 18.7 kB in 1s (19.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpose7gzrl/libxcb-render-util0_0.3.10-1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-mrcfile all 1.5.4-3 [118 kB] Fetched 118 kB in 2s (57.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplp27kjb4/python3-mrcfile_1.5.4-3_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libc6 loong64 2.42-15 [1286 kB] Fetched 1286 kB in 0s (3682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ennjoem/libc6_2.42-15_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libglx0 loong64 1.7.0-3+b1 [29.8 kB] Fetched 29.8 kB in 0s (2782 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxh9bfavi/libglx0_1.7.0-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 librsvg2-2 loong64 2.62.1+dfsg-1 [1612 kB] Fetched 1612 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzgflef_p/librsvg2-2_2.62.1+dfsg-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgssapi-krb5-2 loong64 1.22.1-2+b1 [141 kB] Fetched 141 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_b6h29ui/libgssapi-krb5-2_1.22.1-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libjansson4 loong64 2.14-2+b4 [41.1 kB] Fetched 41.1 kB in 0s (2680 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe6fjpm14/libjansson4_2.14-2+b4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 gettext-base loong64 0.23.2-2 [242 kB] Fetched 242 kB in 0s (4851 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnspx1o4n/gettext-base_0.23.2-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libglvnd0 loong64 1.7.0-3+b1 [54.9 kB] Fetched 54.9 kB in 0s (1155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt4iaskv1/libglvnd0_1.7.0-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-randr0 loong64 1.17.0-2+b2 [116 kB] Fetched 116 kB in 0s (6591 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb0elk2hs/libxcb-randr0_1.17.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 hicolor-icon-theme all 0.18-2 [11.8 kB] Fetched 11.8 kB in 0s (861 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpetr86xp1/hicolor-icon-theme_0.18-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 ncurses-bin loong64 6.6+20251231-1+b1 [439 kB] Fetched 439 kB in 0s (31.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt6sb1una/ncurses-bin_6.6+20251231-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260604T082513Z unstable/main loong64 bsdextrautils loong64 2.42-6 [103 kB] Fetched 103 kB in 0s (592 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwukklqww/bsdextrautils_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pytest all 9.0.3-1 [273 kB] Fetched 273 kB in 1s (326 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxc_o5108/python3-pytest_9.0.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 zlib1g-dev loong64 1:1.3.dfsg+really1.3.2-3 [986 kB] Fetched 986 kB in 1s (700 kB/s) dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpnt55j42j/zlib1g-dev_1.3.dfsg+really1.3.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhdf5-hl-310 loong64 1.14.6+repack-2+b1 [64.8 kB] Fetched 64.8 kB in 0s (196 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4p07akpa/libhdf5-hl-310_1.14.6+repack-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libacl1 loong64 2.3.2-3 [33.6 kB] Fetched 33.6 kB in 0s (70.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsaskvstx/libacl1_2.3.2-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-ordered-set all 4.1.0-1 [9628 B] Fetched 9628 B in 1s (11.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv6qyy7oz/python3-ordered-set_4.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpam-runtime all 1.7.0-5 [249 kB] Fetched 249 kB in 1s (263 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxjg7v9z5/libpam-runtime_1.7.0-5_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libngtcp2-crypto-ossl0 loong64 1.22.1-1 [22.8 kB] Fetched 22.8 kB in 1s (24.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgbge8uxn/libngtcp2-crypto-ossl0_1.22.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libldap-dev loong64 2.6.10+dfsg-1+b2 [611 kB] Fetched 611 kB in 1s (708 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnitmgvib/libldap-dev_2.6.10+dfsg-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-chrono1.90-dev loong64 1.90.0-6 [286 kB] Fetched 286 kB in 0s (21.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb8rp_z7j/libboost-chrono1.90-dev_1.90.0-6_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libbsd0 loong64 0.12.2-2+b2 [132 kB] Fetched 132 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptkpg8lwh/libbsd0_0.12.2-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libcurl4t64 loong64 8.20.0-1 [410 kB] Fetched 410 kB in 0s (30.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj1ezj5tk/libcurl4t64_8.20.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpulse0 loong64 17.0+dfsg1-2.1+b1 [261 kB] Fetched 261 kB in 0s (21.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmixoape4/libpulse0_17.0+dfsg1-2.1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 autopoint all 0.23.2-2 [770 kB] Fetched 770 kB in 0s (26.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw5wgwa43/autopoint_0.23.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3-stdlib loong64 3.13.9-3+b1 [8348 B] Fetched 8348 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaav1mxk9/libpython3-stdlib_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 diffutils loong64 1:3.12-1+b1 [405 kB] Fetched 405 kB in 0s (29.7 MB/s) dpkg-name: info: moved 'diffutils_1%3a3.12-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpcten_flf/diffutils_3.12-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libwayland-cursor0 loong64 1.24.0-2+b2 [11.8 kB] Fetched 11.8 kB in 0s (1116 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpciutsup4/libwayland-cursor0_1.24.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Fetched 11.4 kB in 0s (724 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphnxy4ya5/python3-jaraco.text_4.0.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libpython3.13 loong64 3.13.12-1 [2210 kB] Fetched 2210 kB in 1s (3163 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyrjuz45c/libpython3.13_3.13.12-1_loong64.deb' Downloading dependency 1 of 671: libkadm5clnt-mit12:loong64=1.22.1-2+b1 Downloading dependency 2 of 671: libboost-regex1.90-dev:loong64=1.90.0-6 Downloading dependency 3 of 671: libpangocairo-1.0-0:loong64=1.57.1-2 Downloading dependency 4 of 671: libzstd1:loong64=1.5.7+dfsg-3+b2 Downloading dependency 5 of 671: libgtk-3-0t64:loong64=3.24.52-1 Downloading dependency 6 of 671: gcc-15-loongarch64-linux-gnu:loong64=15.2.0-17 Downloading dependency 7 of 671: procps:loong64=2:4.0.4-9+b2 Downloading dependency 8 of 671: liblz4-dev:loong64=1.10.0-10 Downloading dependency 9 of 671: libudev1:loong64=260.1-1 Downloading dependency 10 of 671: perl:loong64=5.40.1-7+b1 Downloading dependency 11 of 671: libpopt0:loong64=1.19+dfsg-2+b2 Downloading dependency 12 of 671: python3-legacy-cgi:loong64=2.6.4-2 Downloading dependency 13 of 671: libgl1:loong64=1.7.0-3+b1 Downloading dependency 14 of 671: libpangoft2-1.0-0:loong64=1.57.1-2 Downloading dependency 15 of 671: libtsan2:loong64=16-20260425-1 Downloading dependency 16 of 671: w3c-sgml-lib:loong64=1.3-3 Downloading dependency 17 of 671: liblcms2-2:loong64=2.19.1-1 Downloading dependency 18 of 671: libgdbm-compat4t64:loong64=1.26-1+b2 Downloading dependency 19 of 671: libssl-dev:loong64=3.6.2-1 Downloading dependency 20 of 671: libpsl5t64:loong64=0.21.5-1 Downloading dependency 21 of 671: python3-brotli:loong64=1.2.0-3 Downloading dependency 22 of 671: python3-installer:loong64=1.0.0+dfsg1-1 Downloading dependency 23 of 671: python3-dateutil:loong64=2.9.0-4 Downloading dependency 24 of 671: python3-charset-normalizer:loong64=3.4.7-1 Downloading dependency 25 of 671: python3.14-dev:loong64=3.14.5~rc1-1 Downloading dependency 26 of 671: libpcre2-16-0:loong64=10.46-1+b2 Downloading dependency 27 of 671: libcom-err2:loong64=1.47.4-1 Downloading dependency 28 of 671: libxss1:loong64=1:1.2.3-1+b4 Downloading dependency 29 of 671: python3-pyproject-hooks:loong64=1.2.0-1 Downloading dependency 30 of 671: libboost-numpy-dev:loong64=1.90.0.2 Downloading dependency 31 of 671: libccp4-data:loong64=8.0.0-5 Downloading dependency 32 of 671: dbus-system-bus-common:loong64=1.16.2-4 Downloading dependency 33 of 671: python3-pymol:loong64=3.1.0+dfsg-1+b1 Downloading dependency 34 of 671: libfftw3-bin:loong64=3.3.10-2+b2 Downloading dependency 35 of 671: jq:loong64=1.8.1-5 Downloading dependency 36 of 671: libgcrypt20:loong64=1.12.2-1 Downloading dependency 37 of 671: libproc2-0:loong64=2:4.0.4-9+b2 Downloading dependency 38 of 671: python3-pkg-resources:loong64=78.1.1-0.1 Downloading dependency 39 of 671: libexpat1:loong64=2.8.0-1 Downloading dependency 40 of 671: libqt5sql5t64:loong64=5.15.17+dfsg-8 Downloading dependency 41 of 671: python3-hatchling:loong64=1.29.0-1 Downloading dependency 42 of 671: libmunge2:loong64=0.5.18-1 Downloading dependency 43 of 671: libcairo2:loong64=1.18.4-3+b1 Downloading dependency 44 of 671: liblapack3:loong64=3.12.1-7+b2 Downloading dependency 45 of 671: libcap-ng0:loong64=0.9.3-1 Downloading dependency 46 of 671: librtmp-dev:loong64=2.6-1 Downloading dependency 47 of 671: g++:loong64=4:15.2.0-5+b1 Downloading dependency 48 of 671: libavahi-common3:loong64=0.8-18 Downloading dependency 49 of 671: libzopfli1:loong64=1.0.3-3+b1 Downloading dependency 50 of 671: libboost-dev:loong64=1.90.0.2 Downloading dependency 51 of 671: libsharpyuv0:loong64=1.5.0-0.1+b2 Downloading dependency 52 of 671: libidn2-dev:loong64=2.3.8-4+b2 Downloading dependency 53 of 671: readline-common:loong64=8.3-4 Downloading dependency 54 of 671: libhdf5-310:loong64=1.14.6+repack-2+b1 Downloading dependency 55 of 671: libsqlite3-0:loong64=3.46.1-9+b1 Downloading dependency 56 of 671: libdrm-common:loong64=2.4.131-1 Downloading dependency 57 of 671: libthai0:loong64=0.1.30-1+b1 Downloading dependency 58 of 671: libnetcdf22:loong64=1:4.10.0-1 Downloading dependency 59 of 671: libtasn1-6:loong64=4.21.0-2+b1 Downloading dependency 60 of 671: ocl-icd-libopencl1:loong64=2.3.4-1+b1 Downloading dependency 61 of 671: python3-natsort:loong64=8.4.0-2 Downloading dependency 62 of 671: python3-msgpack:loong64=1.1.2-2 Downloading dependency 63 of 671: libeigen3-dev:loong64=3.4.0-5 Downloading dependency 64 of 671: libsdl3-0:loong64=3.4.8+ds-1 Downloading dependency 65 of 671: libldap2:loong64=2.6.10+dfsg-1+b2 Downloading dependency 66 of 671: libx11-xcb1:loong64=2:1.8.13-1 Downloading dependency 67 of 671: libinput-bin:loong64=1.31.1-1 Downloading dependency 68 of 671: gzip:loong64=1.13-1+b1 Downloading dependency 69 of 671: libgdk-pixbuf-2.0-0:loong64=2.44.6+dfsg-2 Downloading dependency 70 of 671: libpam-modules:loong64=1.7.0-5+b2 Downloading dependency 71 of 671: mesa-libgallium:loong64=26.0.6-1 Downloading dependency 72 of 671: libngtcp2-crypto-gnutls8:loong64=1.22.1-1 Downloading dependency 73 of 671: xml-core:loong64=0.20 Downloading dependency 74 of 671: python3-wxgtk4.0:loong64=4.2.4+dfsg-1+b1 Downloading dependency 75 of 671: libsasl2-2:loong64=2.1.28+dfsg1-11 Downloading dependency 76 of 671: fonts-lato:loong64=2.015-1 Downloading dependency 77 of 671: sfftw-dev:loong64=2.1.5-8 Downloading dependency 78 of 671: libopengl-dev:loong64=1.7.0-3+b1 Downloading dependency 79 of 671: python3-autocommand:loong64=2.2.2-4 Downloading dependency 80 of 671: sfftw2:loong64=2.1.5-8 Downloading dependency 81 of 671: libmagic1t64:loong64=1:5.46-5+b2 Downloading dependency 82 of 671: libann-cctbx-dev:loong64=1.1.2+doc-9+b1 Downloading dependency 83 of 671: libabsl20260107:loong64=20260107.0-5 Downloading dependency 84 of 671: libitm1:loong64=16-20260425-1 Downloading dependency 85 of 671: python3-pycbf:loong64=0.9.7+dfsg1-5.1+b1 Downloading dependency 86 of 671: python3.13-tk:loong64=3.13.12-1 Downloading dependency 87 of 671: python3-hdf5plugin:loong64=5.1.0-1 Downloading dependency 88 of 671: fonts-dejavu-extra:loong64=2.37-9 Downloading dependency 89 of 671: sed:loong64=4.9-3 Downloading dependency 90 of 671: libdatrie1:loong64=0.2.14-1+b1 Downloading dependency 91 of 671: dconf-gsettings-backend:loong64=0.49.0-4+b1 Downloading dependency 92 of 671: libcairo-gobject2:loong64=1.18.4-3+b1 Downloading dependency 93 of 671: libkadm5srv-mit12:loong64=1.22.1-2+b1 Downloading dependency 94 of 671: libsystemd-shared:loong64=260.1-1 Downloading dependency 95 of 671: python3.14-tk:loong64=3.14.5~rc1-1 Downloading dependency 96 of 671: file:loong64=1:5.46-5+b2 Downloading dependency 97 of 671: libgtk-3-common:loong64=3.24.52-1 Downloading dependency 98 of 671: libpython3-dev:loong64=3.13.9-3+b1 Downloading dependency 99 of 671: libsvtav1enc4:loong64=4.1.0+dfsg-1 Downloading dependency 100 of 671: bubblewrap:loong64=0.11.2-1 Downloading dependency 101 of 671: libde265-0:loong64=1.0.18-1 Downloading dependency 102 of 671: libasound2t64:loong64=1.2.15.3-1+b1 Downloading dependency 103 of 671: libwebp-dev:loong64=1.5.0-0.1+b2 Downloading dependency 104 of 671: python3-all-dev:loong64=3.13.9-3+b1 Downloading dependency 105 of 671: libmpfr6:loong64=4.2.2-3 Downloading dependency 106 of 671: libpam-modules-bin:loong64=1.7.0-5+b2 Downloading dependency 107 of 671: libboost-test1.90-dev:loong64=1.90.0-6 Downloading dependency 108 of 671: ibverbs-providers:loong64=63.0-1 Downloading dependency 109 of 671: rpcsvc-proto:loong64=1.4.3-1+b1 Downloading dependency 110 of 671: dh-strip-nondeterminism:loong64=1.15.0-1 Downloading dependency 111 of 671: python3-setuptools:loong64=78.1.1-0.1 Downloading dependency 112 of 671: libkrb5support0:loong64=1.22.1-2+b1 Downloading dependency 113 of 671: libngtcp2-dev:loong64=1.22.1-1 Downloading dependency 114 of 671: libgnutls-dane0t64:loong64=3.8.13-1 Downloading dependency 115 of 671: libperl5.40:loong64=5.40.1-7+b1 Downloading dependency 116 of 671: pybuild-plugin-pyproject:loong64=7.20260309 Downloading dependency 117 of 671: python3-procrunner:loong64=2.3.3-2 Downloading dependency 118 of 671: libevdev2:loong64=1.13.6+dfsg-2 Downloading dependency 119 of 671: libxcb-keysyms1:loong64=0.4.1-1+b2 Downloading dependency 120 of 671: coreutils:loong64=9.10-1 Downloading dependency 121 of 671: libgmp-dev:loong64=2:6.3.0+dfsg-5+b2 Downloading dependency 122 of 671: libvorbisenc2:loong64=1.3.7-3+b2 Downloading dependency 123 of 671: libjs-sphinxdoc:loong64=9.1.0-2Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Fetched 19.9 kB in 0s (63.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoi_01di1/libfile-stripnondeterminism-perl_1.15.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libssh2-1t64 loong64 1.11.1-2 [247 kB] Fetched 247 kB in 0s (754 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0369als_/libssh2-1t64_1.11.1-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-wheel all 0.47.0-1 [26.9 kB] Fetched 26.9 kB in 0s (57.7 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpna049vso/python3-wheel_0.47.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fftw-dev loong64 2.1.5-8 [293 kB] Fetched 293 kB in 0s (609 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprew00gkd/fftw-dev_2.1.5-8_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 dbus-user-session loong64 1.16.2-4 [53.0 kB] Fetched 53.0 kB in 0s (922 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3kk3wvva/dbus-user-session_1.16.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpng16-16t64 loong64 1.6.58-1 [286 kB] Fetched 286 kB in 0s (3934 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_69iezo2/libpng16-16t64_1.6.58-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxxhash-dev loong64 0.8.3-2+b2 [131 kB] Fetched 131 kB in 0s (10.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzkq88411/libxxhash-dev_0.8.3-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxfixes3 loong64 1:6.0.0-2+b5 [20.6 kB] Fetched 20.6 kB in 0s (2024 kB/s) dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2+b5_loong64.deb' to '/srv/rebuilderd/tmp/tmp5c7_r6i8/libxfixes3_6.0.0-2+b5_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgles2 loong64 1.7.0-3+b1 [19.9 kB] Fetched 19.9 kB in 0s (348 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpygs_1ceh/libgles2_1.7.0-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 binutils loong64 2.46-3 [70.0 kB] Fetched 70.0 kB in 0s (6682 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfn89hc6n/binutils_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libavif16 loong64 1.4.1-1+b1 [144 kB] Fetched 144 kB in 0s (754 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw8vivd9e/libavif16_1.4.1-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost1.90-dev loong64 1.90.0-6 [11.3 MB] Fetched 11.3 MB in 1s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcm2wn_wt/libboost1.90-dev_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-image0 loong64 0.4.0-2+b3 [22.3 kB] Fetched 22.3 kB in 1s (40.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdcybz0_z/libxcb-image0_0.4.0-2+b3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libepoxy0 loong64 1.5.10-2+b2 [202 kB] Fetched 202 kB in 0s (630 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_wsukwhb/libepoxy0_1.5.10-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-scipy loong64 1.16.3-4+b1 [17.6 MB] Fetched 17.6 MB in 0s (98.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf7tpj361/python3-scipy_1.16.3-4+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260604T082513Z unstable/main loong64 libblkid1 loong64 2.42-6 [180 kB] Fetched 180 kB in 0s (11.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_by8luln/libblkid1_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 pkg-config loong64 2.5.1-4 [18.1 kB] Fetched 18.1 kB in 0s (240 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcj07dhks/pkg-config_2.5.1-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 po-debconf all 1.0.22 [216 kB] Fetched 216 kB in 0s (18.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpocuo97fy/po-debconf_1.0.22_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgssrpc4t64 loong64 1.22.1-2+b1 [60.9 kB] Fetched 60.9 kB in 0s (5860 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoz588rgy/libgssrpc4t64_1.22.1-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-idna all 3.11-1 [41.7 kB] Fetched 41.7 kB in 0s (1199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpabiddykm/python3-idna_3.11-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fftw2 loong64 2.1.5-8 [208 kB] Fetched 208 kB in 0s (17.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpykkw8c89/fftw2_2.1.5-8_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 unicode-data all 17.0.0-2 [9354 kB] Fetched 9354 kB in 0s (107 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc5p0w6or/unicode-data_17.0.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libmagic-mgc loong64 1:5.46-5+b2 [337 kB] Fetched 337 kB in 0s (27.0 MB/s) dpkg-name: info: moved 'libmagic-mgc_1%3a5.46-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpl3nysoae/libmagic-mgc_5.46-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-minimal loong64 3.13.9-3+b1 [25.4 kB] Fetched 25.4 kB in 0s (472 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6kptq0_0/python3-minimal_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libunistring5 loong64 1.4.2-1 [483 kB] Fetched 483 kB in 0s (34.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnl2q_i2s/libunistring5_1.4.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-inflect all 7.5.0-1 [33.0 kB] Fetched 33.0 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_l1rvdzw/python3-inflect_7.5.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5designer5 loong64 5.15.17-4+b1 [2771 kB] Fetched 2771 kB in 0s (74.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgnhkx24o/libqt5designer5_5.15.17-4+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtinfo6 loong64 6.6+20251231-1+b1 [350 kB] Fetched 350 kB in 0s (27.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf4sb3su3/libtinfo6_6.6+20251231-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libann-cctbx0 loong64 1.1.2+doc-9+b1 [32.1 kB] Fetched 32.1 kB in 1s (58.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpid4ib_sx/libann-cctbx0_1.1.2+doc-9+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpcre2-32-0 loong64 10.46-1+b2 [263 kB] Fetched 263 kB in 0s (9030 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6jmy7cav/libpcre2-32-0_10.46-1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 gettext loong64 0.23.2-2 [1676 kB] Fetched 1676 kB in 0s (72.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp11ew5az0/gettext_0.23.2-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 scons all 4.10.1+dfsg-2 [564 kB] Fetched 564 kB in 0s (38.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_krtf_ys/scons_4.10.1+dfsg-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtasn1-6-dev loong64 4.21.0-2+b1 [155 kB] Fetched 155 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbv3mo_cx/libtasn1-6-dev_4.21.0-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fonts-lyx all 2.5.1-1 [190 kB] Fetched 190 kB in 0s (12.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptxsfyge1/fonts-lyx_2.5.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpkgconf7 loong64 2.5.1-4 [48.2 kB] Fetched 48.2 kB in 0s (3405 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdfeywyxb/libpkgconf7_2.5.1-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 automake all 1:1.18.1-4 [877 kB] Fetched 877 kB in 0s (48.3 MB/s) dpkg-name: info: moved 'automake_1%3a1.18.1-4_all.deb' to '/srv/rebuilderd/tmp/tmprih3zozr/automake_1.18.1-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxxf86vm1 loong64 1:1.1.4-2+b1 [20.7 kB] Fetched 20.7 kB in 0s (0 B/s) dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-2+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpzg26um7_/libxxf86vm1_1.1.4-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 make loong64 4.4.1-3+b1 [462 kB] Fetched 462 kB in 0s (36.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmty3o2z5/make_4.4.1-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 cpp-15-loongarch64-linux-gnu loong64 15.2.0-17 [10.2 MB] Fetched 10.2 MB in 0s (89.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp400chunc/cpp-15-loongarch64-linux-gnu_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libantlr3c-3.4-0 loong64 3.4+dfsg-4+b3 [51.2 kB] Fetched 51.2 kB in 0s (1943 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp16yxh3wj/libantlr3c-3.4-0_3.4+dfsg-4+b3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgcc-15-dev loong64 15.2.0-17 [5378 kB] Fetched 5378 kB in 0s (49.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy3qj3sl5/libgcc-15-dev_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-urllib3 all 2.6.3-2 [118 kB] Fetched 118 kB in 0s (2044 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpanhn_f2o/python3-urllib3_2.6.3-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libkeyutils1 loong64 1.6.3-6+b2 [9524 B] Fetched 9524 B in 0s (814 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcvr1urvk/libkeyutils1_1.6.3-6+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 pkgconf loong64 2.5.1-4 [33.6 kB] Fetched 33.6 kB in 0s (204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpio7ktrys/pkgconf_2.5.1-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 librtmp1 loong64 2.6-1 [60.2 kB] Fetched 60.2 kB in 0s (5787 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbhmexpl8/librtmp1_2.6-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 gtk-update-icon-cache loong64 4.22.3+ds-1 [40.6 kB] Fetched 40.6 kB in 0s (3800 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp689yv7ok/gtk-update-icon-cache_4.22.3+ds-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5gui5t64 loong64 5.15.17+dfsg-8 [3485 kB] Fetched 3485 kB in 0s (90.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3vfk8bw2/libqt5gui5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgmpxx4ldbl loong64 2:6.3.0+dfsg-5+b2 [328 kB] Fetched 328 kB in 0s (25.8 MB/s) dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpqe58uucu/libgmpxx4ldbl_6.3.0+dfsg-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Fetched 22.9 kB in 0s (789 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpiwjf571d/intltool-debian_0.35.0+20060710.6_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpmix2t64 loong64 6.0.0+really5.0.9-3+b1 [642 kB] Fetched 642 kB in 0s (30.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmposdh72x1/libpmix2t64_6.0.0+really5.0.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-jaraco.context all 6.0.1-2 [8184 B] Fetched 8184 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsin51th0/python3-jaraco.context_6.0.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 systemd loong64 260.1-1 [3183 kB] Fetched 3183 kB in 0s (50.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp_vj3xk4/systemd_260.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libkrb5-3 loong64 1.22.1-2+b1 [347 kB] Fetched 347 kB in 1s (422 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpccg208xr/libkrb5-3_1.22.1-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblerc-dev loong64 4.1.0+ds-1 [915 kB] Fetched 915 kB in 0s (8896 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdoeoxl4d/liblerc-dev_4.1.0+ds-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libwayland-client0 loong64 1.24.0-2+b2 [28.9 kB] Fetched 28.9 kB in 0s (375 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp31nms7r7/libwayland-client0_1.24.0-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libfftw3-long3 loong64 3.3.10-2+b2 [676 kB] Fetched 676 kB in 0s (44.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkcv_jjnp/libfftw3-long3_3.3.10-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-dri3-0 loong64 1.17.0-2+b2 [107 kB] Fetched 107 kB in 0s (7052 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsuk16gbj/libxcb-dri3-0_1.17.0-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libc-bin loong64 2.42-15 [575 kB] Fetched 575 kB in 0s (38.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphkno6wd2/libc-bin_2.42-15_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libfuse3-4 loong64 3.18.2-2 [100 kB] Fetched 100 kB in 0s (6738 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3yl4pyx8/libfuse3-4_3.18.2-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dh-autoreconf all 22 [12.2 kB] Fetched 12.2 kB in 0s (877 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpffakn038/dh-autoreconf_22_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 dbus loong64 1.16.2-4 [72.4 kB] Fetched 72.4 kB in 0s (6440 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi2lj2veb/dbus_1.16.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libimagequant0 loong64 4.4.1-1+b2 [225 kB] Fetched 225 kB in 0s (14.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1x134zv1/libimagequant0_4.4.1-1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260604T082513Z unstable/main loong64 libmount1 loong64 2.42-6 [221 kB] Fetched 221 kB in 0s (1870 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps5rrgc9s/libmount1_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libclipper2 loong64 2.1.20201109-2+b4 [1120 kB] Fetched 1120 kB in 2s (558 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5a2q81va/libclipper2_2.1.20201109-2+b4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gcc-loongarch64-linux-gnu loong64 4:15.2.0-5+b1 [1452 B] Fetched 1452 B in 0s (4128 B/s) dpkg-name: info: moved 'gcc-loongarch64-linux-gnu_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpb0varwb4/gcc-loongarch64-linux-gnu_15.2.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-dev loong64 3.13.9-3+b1 [29.8 kB] Fetched 29.8 kB in 0s (103 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc0f615ku/python3-dev_3.13.9-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libedit2 loong64 3.1-20251016-1+b1 [93.2 kB] Fetched 93.2 kB in 0s (3202 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpx27f_ivw/libedit2_3.1-20251016-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-atomic1.90-dev loong64 1.90.0-6 [239 kB] Fetched 239 kB in 0s (2148 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5dhcuvqm/libboost-atomic1.90-dev_1.90.0-6_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3.13-minimal loong64 3.13.12-1 [2222 kB] Fetched 2222 kB in 0s (5206 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8zz8f3jz/python3.13-minimal_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgmp10 loong64 2:6.3.0+dfsg-5+b2 [567 kB] Fetched 567 kB in 0s (14.9 MB/s) dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmptq7kgz3p/libgmp10_6.3.0+dfsg-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-contourpy loong64 1.3.3-1+b1 [276 kB] Fetched 276 kB in 0s (6177 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa0e2fags/python3-contourpy_1.3.3-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Fetched 10.1 kB in 0s (23.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5f01dyyp/python3-rlpycairo_0.3.0-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 xz-utils loong64 5.8.3-1 [740 kB] Fetched 740 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkf8fahmz/xz-utils_5.8.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-numpy1.90.0 loong64 1.90.0-6 [236 kB] Fetched 236 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppppu_8sj/libboost-numpy1.90.0_1.90.0-6_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3.13-dev loong64 3.13.12-1 [505 kB] Fetched 505 kB in 0s (27.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzescmvwq/python3.13-dev_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 x11-common all 1:7.7+26 [217 kB] Fetched 217 kB in 0s (13.2 MB/s) dpkg-name: info: moved 'x11-common_1%3a7.7+26_all.deb' to '/srv/rebuilderd/tmp/tmpcstj06gq/x11-common_7.7+26_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-build all 1.4.0-1 [38.8 kB] Fetched 38.8 kB in 0s (2644 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmfuu4_wu/python3-build_1.4.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libheif1 loong64 1.21.2-4 [597 kB] Fetched 597 kB in 0s (39.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmye9m7_d/libheif1_1.21.2-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libctf-nobfd0 loong64 2.46-3 [166 kB] Fetched 166 kB in 0s (10.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyd5s40ok/libctf-nobfd0_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnotify4 loong64 0.8.8-1+b1 [27.1 kB] Fetched 27.1 kB in 0s (1890 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppd_ymzz9/libnotify4_0.8.8-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 tzdata all 2026b-1 [260 kB] Fetched 260 kB in 0s (20.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpetm4408s/tzdata_2026b-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpython3-all-dev loong64 3.13.9-3+b1 [1080 B] Fetched 1080 B in 0s (100 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpukxzglsa/libpython3-all-dev_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 g++-loongarch64-linux-gnu loong64 4:15.2.0-5+b1 [1208 B] Fetched 1208 B in 0s (113 kB/s) dpkg-name: info: moved 'g++-loongarch64-linux-gnu_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpjyk1hw6a/g++-loongarch64-linux-gnu_15.2.0-5+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libjq1 loong64 1.8.1-5 [165 kB] Fetched 165 kB in 0s (9801 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3vc0kb51/libjq1_1.8.1-5_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libatomic1 loong64 16-20260425-1 [9364 B] Fetched 9364 B in 0s (642 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpaqpdeb03/libatomic1_16-20260425-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fonts-dejavu-mono all 2.37-9 [488 kB] Fetched 488 kB in 0s (26.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2twt01_k/fonts-dejavu-mono_2.37-9_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libfontenc1 loong64 1:1.1.8-1+b3 [23.4 kB] Fetched 23.4 kB in 0s (1761 kB/s) dpkg-name: info: moved 'libfontenc1_1%3a1.1.8-1+b3_loong64.deb' to '/srv/rebuilderd/tmp/tmpwq134see/libfontenc1_1.1.8-1+b3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libraqm0 loong64 0.10.5-1 [13.4 kB] Fetched 13.4 kB in 2s (6853 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkf3splhn/libraqm0_0.10.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-all loong64 3.13.9-3+b1 [1060 B] Fetched 1060 B in 1s (1490 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsexemoen/python3-all_3.13.9-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 xtrans-dev all 1.6.0-1 [93.5 kB] Fetched 93.5 kB in 0s (812 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpa1bqnw6h/xtrans-dev_1.6.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 man-db loong64 2.13.1-1+b1 [1460 kB] Fetched 1460 kB in 0s (63.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpadqdx94i/man-db_2.13.1-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-present0 loong64 1.17.0-2+b2 [105 kB] Fetched 105 kB in 0s (6829 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnnt91ssw/libxcb-present0_1.17.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxft2 loong64 2.3.6-1+b5 [53.6 kB] Fetched 53.6 kB in 0s (338 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpi3y4bp6h/libxft2_2.3.6-1+b5_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Fetched 108 kB in 0s (476 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpat3snkxl/python3-chardet_5.2.0+dfsg-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-xinerama0 loong64 1.17.0-2+b2 [105 kB] Fetched 105 kB in 0s (500 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgglygv50/libxcb-xinerama0_1.17.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 pybind11-dev all 3.0.1-3 [240 kB] Fetched 240 kB in 0s (1083 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3e0e0cq2/pybind11-dev_3.0.1-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libavahi-common-data loong64 0.8-18 [113 kB] Fetched 113 kB in 1s (199 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp08vd_hhv/libavahi-common-data_0.8-18_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libbrotli1 loong64 1.2.0-3 [312 kB] Fetched 312 kB in 0s (2026 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbsp3yvi1/libbrotli1_1.2.0-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libp11-kit-dev loong64 0.26.2-2 [223 kB] Fetched 223 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8jxxtts8/libp11-kit-dev_0.26.2-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libdbus-1-3 loong64 1.16.2-4 [179 kB] Fetched 179 kB in 1s (232 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcfqqisxw/libdbus-1-3_1.16.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libjbig-dev loong64 2.1-6.1+b3 [54.2 kB] Fetched 54.2 kB in 0s (148 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv_q6xovp/libjbig-dev_2.1-6.1+b3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5widgets5t64 loong64 5.15.17+dfsg-8 [2451 kB] Fetched 2451 kB in 0s (5491 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb173oelu/libqt5widgets5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libz3-4 loong64 4.13.3-1+b2 [8184 kB] Fetched 8184 kB in 0s (52.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpr5fqo190/libz3-4_4.13.3-1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 dh-python all 7.20260309 [114 kB] Fetched 114 kB in 0s (8966 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppr92oesh/dh-python_7.20260309_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libhwloc-plugins loong64 2.13.0-2 [18.5 kB] Fetched 18.5 kB in 0s (1223 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzjqxde5l/libhwloc-plugins_2.13.0-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxau-dev loong64 1:1.0.11-1+b2 [28.2 kB] Fetched 28.2 kB in 0s (1907 kB/s) dpkg-name: info: moved 'libxau-dev_1%3a1.0.11-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpqt4z5276/libxau-dev_1.0.11-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-exception1.90-dev loong64 1.90.0-6 [221 kB] Fetched 221 kB in 0s (18.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxt6kqjfi/libboost-exception1.90-dev_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libegl1 loong64 1.7.0-3+b1 [35.4 kB] Fetched 35.4 kB in 0s (337 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe8o0c5up/libegl1_1.7.0-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-cairo loong64 1.27.0-2+b1 [131 kB] Fetched 131 kB in 0s (11.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyep1h0nh/python3-cairo_1.27.0-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxkbcommon0 loong64 1.13.1-1 [142 kB] Fetched 142 kB in 0s (12.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbn8crb_a/libxkbcommon0_1.13.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-typing-extensions all 4.15.0-2 [92.5 kB] Fetched 92.5 kB in 0s (483 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2eeywtu2/python3-typing-extensions_4.15.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5opengl5t64 loong64 5.15.17+dfsg-8 [146 kB] Fetched 146 kB in 0s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3lupuo_b/libqt5opengl5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 perl-modules-5.40 all 5.40.1-7 [3012 kB] Fetched 3012 kB in 0s (12.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm0ygr_dk/perl-modules-5.40_5.40.1-7_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-thread1.90-dev loong64 1.90.0-6 [419 kB] Fetched 419 kB in 0s (29.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfyj9x0s4/libboost-thread1.90-dev_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libfribidi0 loong64 1.0.16-5+b1 [26.6 kB] Fetched 26.6 kB in 0s (71.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0i9tfm5n/libfribidi0_1.0.16-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmtdev1t64 loong64 1.1.7-1+b2 [23.1 kB] Fetched 23.1 kB in 0s (92.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9_dm_a9j/libmtdev1t64_1.1.7-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libjpeg-dev loong64 1:3.1.3-4 [78.9 kB] Fetched 78.9 kB in 0s (747 kB/s) dpkg-name: info: moved 'libjpeg-dev_1%3a3.1.3-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpcqz1po8w/libjpeg-dev_3.1.3-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libssm-dev loong64 1.4.0-2+b4 [15.2 kB] Fetched 15.2 kB in 1s (21.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkb3o7qh8/libssm-dev_1.4.0-2+b4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgbm1 loong64 26.0.6-1 [45.4 kB] Fetched 45.4 kB in 1s (30.3 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7382ifn0/libgbm1_26.0.6-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsharpyuv-dev loong64 1.5.0-0.1+b2 [129 kB] Fetched 129 kB in 1s (204 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbk5bsxc/libsharpyuv-dev_1.5.0-0.1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libfftw3-double3 loong64 3.3.10-2+b2 [358 kB] Fetched 358 kB in 1s (327 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6mu3r80e/libfftw3-double3_3.3.10-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 netbase all 6.5 [12.4 kB] Fetched 12.4 kB in 0s (42.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkqfmxi5e/netbase_6.5_all.deb' Downloading dependency 124 of 671: libopenjp2-7:loong64=2.5.4-1.1 Downloading dependency 125 of 671: libgdk-pixbuf2.0-common:loong64=2.44.6+dfsg-2 Downloading dependency 126 of 671: libwacom9:loong64=2.18.0-1 Downloading dependency 127 of 671: libssm2:loong64=1.4.0-2+b4 Downloading dependency 128 of 671: g++-15:loong64=15.2.0-17 Downloading dependency 129 of 671: autoconf:loong64=2.72-6 Downloading dependency 130 of 671: sensible-utils:loong64=0.0.26 Downloading dependency 131 of 671: libdeflate-dev:loong64=1.23-2+b2 Downloading dependency 132 of 671: libmpc3:loong64=1.3.1-3 Downloading dependency 133 of 671: libqt5core5t64:loong64=5.15.17+dfsg-8 Downloading dependency 134 of 671: autotools-dev:loong64=20240727.1+nmu1 Downloading dependency 135 of 671: libffi8:loong64=3.5.2-4 Downloading dependency 136 of 671: libopenmpi40:loong64=5.0.10-1 Downloading dependency 137 of 671: libwebpmux3:loong64=1.5.0-0.1+b2 Downloading dependency 138 of 671: fonts-dejavu-core:loong64=2.37-9 Downloading dependency 139 of 671: python3-numpy:loong64=1:2.4.4+ds-2 Downloading dependency 140 of 671: libqt5xml5t64:loong64=5.15.17+dfsg-8 Downloading dependency 141 of 671: libxcb-xkb1:loong64=1.17.0-2+b2 Downloading dependency 142 of 671: nettle-dev:loong64=3.10.2-1+b1 Downloading dependency 143 of 671: libglib2.0-0t64:loong64=2.88.1-2 Downloading dependency 144 of 671: libc-gconv-modules-extra:loong64=2.42-15 Downloading dependency 145 of 671: python3-platformdirs:loong64=4.9.6-1 Downloading dependency 146 of 671: python3-pyqt5.qtopengl:loong64=5.15.11+dfsg-4 Downloading dependency 147 of 671: libpixman-1-0:loong64=0.46.4-1+b2 Downloading dependency 148 of 671: libicu78:loong64=78.3-1 Downloading dependency 149 of 671: libdebconfclient0:loong64=0.282+b3 Downloading dependency 150 of 671: libdrm2:loong64=2.4.131-1+b1 Downloading dependency 151 of 671: libdeflate0:loong64=1.23-2+b2 Downloading dependency 152 of 671: libkdb5-10t64:loong64=1.22.1-2+b1 Downloading dependency 153 of 671: libaec0:loong64=1.1.6-1 Downloading dependency 154 of 671: debconf:loong64=1.5.92 Downloading dependency 155 of 671: libxrender1:loong64=1:0.9.12-1+b2 Downloading dependency 156 of 671: krb5-multidev:loong64=1.22.1-2+b1 Downloading dependency 157 of 671: libidn2-0:loong64=2.3.8-4+b2 Downloading dependency 158 of 671: cpp:loong64=4:15.2.0-5+b1 Downloading dependency 159 of 671: libjbig0:loong64=2.1-6.1+b3 Downloading dependency 160 of 671: libccp4-dev:loong64=8.0.0-5+b1 Downloading dependency 161 of 671: libxcb1-dev:loong64=1.17.0-2+b2 Downloading dependency 162 of 671: libexpat1-dev:loong64=2.8.0-1 Downloading dependency 163 of 671: xfonts-encodings:loong64=1:1.0.4-2.2 Downloading dependency 164 of 671: libasyncns0:loong64=0.8-7+b2 Downloading dependency 165 of 671: architecture-properties:loong64=0.2.6+b2 Downloading dependency 166 of 671: libglew2.3:loong64=2.3.1-6 Downloading dependency 167 of 671: python3.14:loong64=3.14.5~rc1-1 Downloading dependency 168 of 671: media-types:loong64=14.0.0 Downloading dependency 169 of 671: python3:loong64=3.13.9-3+b1 Downloading dependency 170 of 671: libjs-jquery:loong64=3.7.1+dfsg+~3.5.33-1 Downloading dependency 171 of 671: libgraphite2-3:loong64=1.3.14-13 Downloading dependency 172 of 671: dbus-bin:loong64=1.16.2-4 Downloading dependency 173 of 671: python3-freetype:loong64=2.5.1-2 Downloading dependency 174 of 671: fontconfig:loong64=2.17.1-5 Downloading dependency 175 of 671: zlib1g:loong64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 176 of 671: libisl23:loong64=0.27-2 Downloading dependency 177 of 671: libuchardet0:loong64=0.0.8-2+b2 Downloading dependency 178 of 671: libxcb-xinput0:loong64=1.17.0-2+b2 Downloading dependency 179 of 671: libpipeline1:loong64=1.5.8-3 Downloading dependency 180 of 671: python3-h5py:loong64=3.16.0-2 Downloading dependency 181 of 671: libx11-6:loong64=2:1.8.13-1 Downloading dependency 182 of 671: libbrotli-dev:loong64=1.2.0-3 Downloading dependency 183 of 671: libpython3.13-dev:loong64=3.13.12-1 Downloading dependency 184 of 671: dconf-service:loong64=0.49.0-4+b1 Downloading dependency 185 of 671: libboost-container1.90.0:loong64=1.90.0-6 Downloading dependency 186 of 671: libtiffxx6:loong64=4.7.1-2 Downloading dependency 187 of 671: base-files:loong64=14+b1 Downloading dependency 188 of 671: libsystemd0:loong64=260.1-1 Downloading dependency 189 of 671: libxcb1:loong64=1.17.0-2+b2 Downloading dependency 190 of 671: libpython3.14:loong64=3.14.5~rc1-1 Downloading dependency 191 of 671: libucx0:loong64=1.20.1~rc2-1 Downloading dependency 192 of 671: python3-packaging:loong64=26.0-1 Downloading dependency 193 of 671: libboost-date-time1.90.0:loong64=1.90.0-6 Downloading dependency 194 of 671: libpciaccess0:loong64=0.17-3+b4 Downloading dependency 195 of 671: python3-typeguard:loong64=4.4.4-2 Downloading dependency 196 of 671: libselinux1:loong64=3.10-1 Downloading dependency 197 of 671: libxext6:loong64=2:1.3.4-1+b4 Downloading dependency 198 of 671: m4:loong64=1.4.21-1 Downloading dependency 199 of 671: dpkg:loong64=1.23.7 Downloading dependency 200 of 671: libseccomp2:loong64=2.6.0-2+b1 Downloading dependency 201 of 671: libcurl3t64-gnutls:loong64=8.20.0-1 Downloading dependency 202 of 671: libxcb-icccm4:loong64=0.4.2-1+b2 Downloading dependency 203 of 671: xkb-data:loong64=2.47-1 Downloading dependency 204 of 671: libdav1d7:loong64=1.5.3-1+b2 Downloading dependency 205 of 671: libsm6:loong64=2:1.2.6-1+b2 Downloading dependency 206 of 671: comerr-dev:loong64=2.1-1.47.4-1 Downloading dependency 207 of 671: shared-mime-info:loong64=2.4-5+b2 Downloading dependency 208 of 671: libboost-regex1.90.0:loong64=1.90.0-6 Downloading dependency 209 of 671: libxshmfence1:loong64=1.3.3-1+b2 Downloading dependency 210 of 671: python3-pyqt5:loong64=5.15.11+dfsg-4 Downloading dependency 211 of 671: libbz2-1.0:loong64=1.0.8-6+b2 Downloading dependency 212 of 671: libxcomposite1:loong64=1:0.4.6-1+b2 Downloading dependency 213 of 671: libkrb5-dev:loong64=1.22.1-2+b1 Downloading dependency 214 of 671: libxcb-render-util0:loong64=0.3.10-1+b2 Downloading dependency 215 of 671: python3-mrcfile:loong64=1.5.4-3 Downloading dependency 216 of 671: libc6:loong64=2.42-15 Downloading dependency 217 of 671: libglx0:loong64=1.7.0-3+b1 Downloading dependency 218 of 671: librsvg2-2:loong64=2.62.1+dfsg-1 Downloading dependency 219 of 671: libgssapi-krb5-2:loong64=1.22.1-2+b1 Downloading dependency 220 of 671: libjansson4:loong64=2.14-2+b4 Downloading dependency 221 of 671: gettext-base:loong64=0.23.2-2 Downloading dependency 222 of 671: libglvnd0:loong64=1.7.0-3+b1 Downloading dependency 223 of 671: libxcb-randr0:loong64=1.17.0-2+b2 Downloading dependency 224 of 671: hicolor-icon-theme:loong64=0.18-2 Downloading dependency 225 of 671: ncurses-bin:loong64=6.6+20251231-1+b1 Downloading dependency 226 of 671: bsdextrautils:loong64=2.42-6 Downloading dependency 227 of 671: python3-pytest:loong64=9.0.3-1 Downloading dependency 228 of 671: zlib1g-dev:loong64=1:1.3.dfsg+really1.3.2-3 Downloading dependency 229 of 671: libhdf5-hl-310:loong64=1.14.6+repack-2+b1 Downloading dependency 230 of 671: libacl1:loong64=2.3.2-3 Downloading dependency 231 of 671: python3-ordered-set:loong64=4.1.0-1 Downloading dependency 232 of 671: libpam-runtime:loong64=1.7.0-5 Downloading dependency 233 of 671: libngtcp2-crypto-ossl0:loong64=1.22.1-1 Downloading dependency 234 of 671: libldap-dev:loong64=2.6.10+dfsg-1+b2 Downloading dependency 235 of 671: libboost-chrono1.90-dev:loong64=1.90.0-6 Downloading dependency 236 of 671: libbsd0:loong64=0.12.2-2+b2 Downloading dependency 237 of 671: libcurl4t64:loong64=8.20.0-1 Downloading dependency 238 of 671: libpulse0:loong64=17.0+dfsg1-2.1+b1 Downloading dependency 239 of 671: autopoint:loong64=0.23.2-2 Downloading dependency 240 of 671: libpython3-stdlib:loong64=3.13.9-3+b1 Downloading dependency 241 of 671: diffutils:loong64=1:3.12-1+b1 Downloading dependency 242 of 671: libwayland-cursor0:loong64=1.24.0-2+b2 Downloading dependency 243 of 671: python3-jaraco.text:loong64=4.0.0-1 Downloading dependency 244 of 671: libpython3.13:loong64=3.13.12-1 Downloading dependency 245 of 671: libfile-stripnondeterminism-perl:loong64=1.15.0-1Get:1 http://deb.debian.org/debian unstable/main loong64 sphinx-rtd-theme-common all 3.1.0+dfsg-1 [1024 kB] Fetched 1024 kB in 0s (3531 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt1w88j7c/sphinx-rtd-theme-common_3.1.0+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-iniconfig all 2.1.0-2 [7540 B] Fetched 7540 B in 1s (13.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpay_s650e/python3-iniconfig_2.1.0-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libjxl0.11 loong64 0.11.2-1 [886 kB] Fetched 886 kB in 1s (1623 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv6vfv_im/libjxl0.11_0.11.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdpkg-perl all 1.23.7 [669 kB] Fetched 669 kB in 0s (2025 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp37vcb09j/libdpkg-perl_1.23.7_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libvorbis0a loong64 1.3.7-3+b2 [87.5 kB] Fetched 87.5 kB in 0s (7375 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpret98zvc/libvorbis0a_1.3.7-3+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmp3lame0 loong64 3.101~svn6531+dfsg-1 [284 kB] Fetched 284 kB in 0s (9896 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuwmqt02v/libmp3lame0_3.101~svn6531+dfsg-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libevent-pthreads-2.1-7t64 loong64 2.1.12-stable-10+b2 [53.3 kB] Fetched 53.3 kB in 0s (4069 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvzxn2e4l/libevent-pthreads-2.1-7t64_2.1.12-stable-10+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libfftw3-single3 loong64 3.3.10-2+b2 [375 kB] Fetched 375 kB in 0s (21.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphs_6n4as/libfftw3-single3_3.3.10-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5printsupport5t64 loong64 5.15.17+dfsg-8 [199 kB] Fetched 199 kB in 0s (9845 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8omhmtm2/libqt5printsupport5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5help5 loong64 5.15.17-4+b1 [154 kB] Fetched 154 kB in 0s (12.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvreujuec/libqt5help5_5.15.17-4+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 hdf5-helpers loong64 1.14.6+repack-2+b1 [20.6 kB] Fetched 20.6 kB in 0s (1431 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpko3xrz1v/hdf5-helpers_1.14.6+repack-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libegl-mesa0 loong64 26.0.6-1 [123 kB] Fetched 123 kB in 0s (7921 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv966_e1y/libegl-mesa0_26.0.6-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 pkgconf-bin loong64 2.5.1-4 [35.2 kB] Fetched 35.2 kB in 0s (2439 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpurvmfd8j/pkgconf-bin_2.5.1-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-glx0 loong64 1.17.0-2+b2 [122 kB] Fetched 122 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmvjtqtg8/libxcb-glx0_1.17.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libblas3 loong64 3.12.1-7+b2 [115 kB] Fetched 115 kB in 0s (8773 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp45b1h57v/libblas3_3.12.1-7+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pathspec all 1.0.4-1 [36.7 kB] Fetched 36.7 kB in 0s (218 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq9kdkdv6/python3-pathspec_1.0.4-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libzstd-dev loong64 1.5.7+dfsg-3+b2 [1326 kB] Fetched 1326 kB in 0s (58.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6o3h374y/libzstd-dev_1.5.7+dfsg-3+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnghttp2-dev loong64 1.69.0-1 [240 kB] Fetched 240 kB in 0s (18.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpar9jtuz_/libnghttp2-dev_1.69.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libopengl0 loong64 1.7.0-3+b1 [38.4 kB] Fetched 38.4 kB in 0s (1638 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu15_kc3o/libopengl0_1.7.0-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnghttp3-9 loong64 1.15.0-1 [67.6 kB] Fetched 67.6 kB in 0s (6060 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpamhc_k7t/libnghttp3-9_1.15.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhogweed6t64 loong64 3.10.2-1+b1 [336 kB] Fetched 336 kB in 0s (2539 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgvemzo3i/libhogweed6t64_3.10.2-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-tqdm all 4.67.3-1 [91.8 kB] Fetched 91.8 kB in 0s (6155 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1bwbicr6/python3-tqdm_4.67.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 gcc loong64 4:15.2.0-5+b1 [5160 B] Fetched 5160 B in 0s (139 kB/s) dpkg-name: info: moved 'gcc_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpdy_v8ina/gcc_15.2.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsensors-config all 1:3.6.2-2 [16.2 kB] Fetched 16.2 kB in 0s (1590 kB/s) dpkg-name: info: moved 'libsensors-config_1%3a3.6.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpvnaelbs4/libsensors-config_3.6.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblz4-1 loong64 1.10.0-10 [61.7 kB] Fetched 61.7 kB in 0s (4193 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1lq95in_/liblz4-1_1.10.0-10_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcap2 loong64 1:2.78-1 [28.2 kB] Fetched 28.2 kB in 0s (1921 kB/s) dpkg-name: info: moved 'libcap2_1%3a2.78-1_loong64.deb' to '/srv/rebuilderd/tmp/tmp5pcmhcrq/libcap2_2.78-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libllvm21 loong64 1:21.1.8-7+b1 [26.0 MB] Fetched 26.0 MB in 1s (38.3 MB/s) dpkg-name: info: moved 'libllvm21_1%3a21.1.8-7+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmp3z1dhl83/libllvm21_21.1.8-7+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libevent-2.1-7t64 loong64 2.1.12-stable-10+b2 [180 kB] Fetched 180 kB in 0s (10.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6l1tahzr/libevent-2.1-7t64_2.1.12-stable-10+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-trove-classifiers all 2026.1.14.14-1 [10.9 kB] Fetched 10.9 kB in 0s (759 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8ubl3jze/python3-trove-classifiers_2026.1.14.14-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libcc1-0 loong64 16-20260425-1 [41.9 kB] Fetched 41.9 kB in 0s (3455 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc6nad19_/libcc1-0_16-20260425-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdecor-0-0 loong64 0.2.5-1+b1 [15.7 kB] Fetched 15.7 kB in 0s (1550 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpynqoqg_3/libdecor-0-0_0.2.5-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5network5t64 loong64 5.15.17+dfsg-8 [691 kB] Fetched 691 kB in 0s (1809 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcdk9mrj5/libqt5network5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260604T082513Z unstable/main loong64 mount loong64 2.42-6 [169 kB] Fetched 169 kB in 0s (9724 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphtkvinpt/mount_2.42-6_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libatspi2.0-0t64 loong64 2.60.3-1 [80.8 kB] Fetched 80.8 kB in 0s (5095 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfi0jhoip/libatspi2.0-0t64_2.60.3-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libatk1.0-0t64 loong64 2.60.3-1 [50.2 kB] Fetched 50.2 kB in 1s (59.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp78k88q9a/libatk1.0-0t64_2.60.3-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libtcl8.6 loong64 8.6.17+dfsg-1+b2 [1075 kB] Fetched 1075 kB in 0s (46.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7uune_dw/libtcl8.6_8.6.17+dfsg-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pluggy all 1.6.0-2 [27.2 kB] Fetched 27.2 kB in 0s (1894 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9ip5qmdg/python3-pluggy_1.6.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxdmcp6 loong64 1:1.1.5-2+b1 [28.4 kB] Fetched 28.4 kB in 0s (2817 kB/s) dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-2+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmp75u569gz/libxdmcp6_1.1.5-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxdmcp-dev loong64 1:1.1.5-2+b1 [53.5 kB] Fetched 53.5 kB in 0s (3571 kB/s) dpkg-name: info: moved 'libxdmcp-dev_1%3a1.1.5-2+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmp59y94ivz/libxdmcp-dev_1.1.5-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 ca-certificates all 20260223 [158 kB] Fetched 158 kB in 0s (9808 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_acmdkwu/ca-certificates_20260223_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgpg-error0 loong64 1.59-4 [90.1 kB] Fetched 90.1 kB in 0s (6313 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppetzow1g/libgpg-error0_1.59-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 bash loong64 5.3-3 [1558 kB] Fetched 1558 kB in 0s (60.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdg6x3xs3/bash_5.3-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libglycin-2-0 loong64 2.0.8-1 [1255 kB] Fetched 1255 kB in 0s (61.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf47fb4j5/libglycin-2-0_2.0.8-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-opengl all 3.1.10+dfsg-1 [624 kB] Fetched 624 kB in 0s (28.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkkb633ar/python3-opengl_3.1.10+dfsg-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libubsan1 loong64 16-20260425-1 [1118 kB] Fetched 1118 kB in 0s (46.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpteqyxplt/libubsan1_16-20260425-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-graph1.90.0 loong64 1.90.0-6 [349 kB] Fetched 349 kB in 0s (19.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfk9vp13l/libboost-graph1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxinerama1 loong64 2:1.1.4-3+b5 [16.2 kB] Fetched 16.2 kB in 0s (1164 kB/s) dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3+b5_loong64.deb' to '/srv/rebuilderd/tmp/tmph07yzwjm/libxinerama1_1.1.4-3+b5_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libsz2 loong64 1.1.6-1 [19.1 kB] Fetched 19.1 kB in 0s (1329 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph7t2jtzh/libsz2_1.1.6-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 gcc-15 loong64 15.2.0-17 [531 kB] Fetched 531 kB in 1s (632 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt1ylra0l/gcc-15_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-graph1.90-dev loong64 1.90.0-6 [1026 kB] Fetched 1026 kB in 0s (3333 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4l9vt85q/libboost-graph1.90-dev_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-xfixes0 loong64 1.17.0-2+b2 [109 kB] Fetched 109 kB in 0s (7502 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqxtattmi/libxcb-xfixes0_1.17.0-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgcc-s1 loong64 16-20260425-1 [107 kB] Fetched 107 kB in 0s (7052 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpysvgksaj/libgcc-s1_16-20260425-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-mpmath all 1.4.1-2 [448 kB] Fetched 448 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdcwndl84/python3-mpmath_1.4.1-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 rsync loong64 3.4.2+ds1-2 [422 kB] Fetched 422 kB in 1s (568 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxygk6tl8/rsync_3.4.2+ds1-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libharfbuzz0b loong64 12.3.2-2+b2 [505 kB] Fetched 505 kB in 1s (912 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp799ptw6/libharfbuzz0b_12.3.2-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dh-exec loong64 0.31+b2 [25.7 kB] Fetched 25.7 kB in 0s (721 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpm9nb_338/dh-exec_0.31+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libevent-core-2.1-7t64 loong64 2.1.12-stable-10+b2 [131 kB] Fetched 131 kB in 0s (10.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwhg3456r/libevent-core-2.1-7t64_2.1.12-stable-10+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libunbound8 loong64 1.25.0-1 [609 kB] Fetched 609 kB in 0s (38.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv91o_2gk/libunbound8_1.25.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 bzip2 loong64 1.0.8-6+b2 [40.3 kB] Fetched 40.3 kB in 0s (3399 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpj0jjh7lj/bzip2_1.0.8-6+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtool all 2.5.4-11 [539 kB] Fetched 539 kB in 1s (650 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgtylc9h7/libtool_2.5.4-11_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libatk-bridge2.0-0t64 loong64 2.60.3-1 [66.0 kB] Fetched 66.0 kB in 0s (4417 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmps9tcdc4h/libatk-bridge2.0-0t64_2.60.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxnvctrl0 loong64 535.171.04-1+b3 [11.1 kB] Fetched 11.1 kB in 0s (1099 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7bn8_nn6/libxnvctrl0_535.171.04-1+b3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fontconfig-config loong64 2.17.1-5 [56.1 kB] Fetched 56.1 kB in 1s (52.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpt0ttwvl7/fontconfig-config_2.17.1-5_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 tar loong64 1.35+dfsg-4 [820 kB] Fetched 820 kB in 0s (47.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2l0zv4rg/tar_1.35+dfsg-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxres1 loong64 2:1.2.1-2 [18.0 kB] Fetched 18.0 kB in 0s (1395 kB/s) dpkg-name: info: moved 'libxres1_2%3a1.2.1-2_loong64.deb' to '/srv/rebuilderd/tmp/tmplz_4spi7/libxres1_1.2.1-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdouble-conversion3 loong64 3.4.0-1+b1 [41.3 kB] Fetched 41.3 kB in 0s (3674 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxhsm7j9h/libdouble-conversion3_3.4.0-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 openssl-provider-legacy loong64 3.6.2-1 [314 kB] Fetched 314 kB in 0s (24.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphobiz779/openssl-provider-legacy_3.6.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcursor1 loong64 1:1.2.3-1+b2 [40.7 kB] Fetched 40.7 kB in 0s (3691 kB/s) dpkg-name: info: moved 'libxcursor1_1%3a1.2.3-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmp2rswp4gq/libxcursor1_1.2.3-1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libpam-systemd loong64 260.1-1 [294 kB] Fetched 294 kB in 0s (5878 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpirjaml9_/libpam-systemd_260.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhdf5-dev loong64 1.14.6+repack-2+b1 [6605 kB] Fetched 6605 kB in 0s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn31g5371/libhdf5-dev_1.14.6+repack-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 liblsan0 loong64 16-20260425-1 [1255 kB] Fetched 1255 kB in 0s (62.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7qt5fk50/liblsan0_16-20260425-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgomp1 loong64 16-20260425-1 [139 kB] Fetched 139 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq2j6tdz6/libgomp1_16-20260425-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 mawk loong64 1.3.4.20260302-1 [141 kB] Fetched 141 kB in 0s (12.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3e3y5lnp/mawk_1.3.4.20260302-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libtk8.6 loong64 8.6.17-1+b2 [800 kB] Fetched 800 kB in 0s (27.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcnz3_zmk/libtk8.6_8.6.17-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpcre2-8-0 loong64 10.46-1+b2 [290 kB] Fetched 290 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5t7pl5t6/libpcre2-8-0_10.46-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5dbus5t64 loong64 5.15.17+dfsg-8 [212 kB] Fetched 212 kB in 0s (17.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgbj6dz40/libqt5dbus5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgav1-2 loong64 0.20.0-2+b1 [342 kB] Fetched 342 kB in 0s (18.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn9n16ki4/libgav1-2_0.20.0-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libccp4c0t64 loong64 8.0.0-5+b1 [89.8 kB] Fetched 89.8 kB in 0s (5651 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdrg3kvgr/libccp4c0t64_8.0.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dash loong64 0.5.12-12+b1 [101 kB] Fetched 101 kB in 0s (835 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb24vnzk3/dash_0.5.12-12+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libheif-plugin-dav1d loong64 1.21.2-4 [18.9 kB] Fetched 18.9 kB in 0s (1324 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpahfctuc0/libheif-plugin-dav1d_1.21.2-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libbinutils loong64 2.46-3 [497 kB] Fetched 497 kB in 0s (26.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz6_i0she/libbinutils_2.46-3_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 gcc-15-base loong64 15.2.0-17 [36.8 kB] Fetched 36.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp86h8j51b/gcc-15-base_15.2.0-17_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libpython3.14-minimal loong64 3.14.5~rc1-1 [893 kB] Fetched 893 kB in 0s (40.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8vabetu7/libpython3.14-minimal_3.14.5~rc1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libantlr3c-dev loong64 3.4+dfsg-4+b3 [215 kB] Fetched 215 kB in 0s (2079 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkz4yi54f/libantlr3c-dev_3.4+dfsg-4+b3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxi6 loong64 2:1.8.2-2+b1 [79.5 kB] Fetched 79.5 kB in 0s (7172 kB/s) dpkg-name: info: moved 'libxi6_2%3a1.8.2-2+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpjwiz_6j0/libxi6_1.8.2-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libglx-mesa0 loong64 26.0.6-1 [113 kB] Fetched 113 kB in 0s (9595 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd4at5u4s/libglx-mesa0_26.0.6-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-six all 1.17.0-2 [16.6 kB] Fetched 16.6 kB in 1s (14.5 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0f67wzr6/python3-six_1.17.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 cpp-loongarch64-linux-gnu loong64 4:15.2.0-5+b1 [4652 B] Fetched 4652 B in 0s (107 kB/s) dpkg-name: info: moved 'cpp-loongarch64-linux-gnu_4%3a15.2.0-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpy2gxvdlk/cpp-loongarch64-linux-gnu_15.2.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 base-passwd loong64 3.6.8+b1 [54.7 kB] Fetched 54.7 kB in 0s (764 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppema132u/base-passwd_3.6.8+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxkbcommon-x11-0 loong64 1.13.1-1 [20.5 kB] Fetched 20.5 kB in 0s (92.4 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp95qz_2si/libxkbcommon-x11-0_1.13.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libthai-data all 0.1.30-1 [172 kB] Fetched 172 kB in 0s (902 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu90q5fl8/libthai-data_0.1.30-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libglu1-mesa loong64 9.0.2-1.1+b4 [175 kB] Fetched 175 kB in 0s (11.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn2vj54z9/libglu1-mesa_9.0.2-1.1+b4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 g++-15-loongarch64-linux-gnu loong64 15.2.0-17 [11.3 MB] Fetched 11.3 MB in 0s (94.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4fd6yagk/g++-15-loongarch64-linux-gnu_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwxgtk3.2-1t64 loong64 3.2.9+dfsg-1+b1 [4586 kB] Fetched 4586 kB in 0s (95.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjzeuqpi3/libwxgtk3.2-1t64_3.2.9+dfsg-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Fetched 72.4 kB in 0s (6965 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcegfo_0a/python3-requests_2.32.5+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblerc4 loong64 4.1.0+ds-1 [184 kB] Fetched 184 kB in 1s (201 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphf4s19xl/liblerc4_4.1.0+ds-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcloudproviders0 loong64 0.4.0-2+b1 [28.3 kB] Fetched 28.3 kB in 0s (1975 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsac8hbhs/libcloudproviders0_0.4.0-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-python1.90-dev loong64 1.90.0-6 [1151 kB] Fetched 1151 kB in 0s (48.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7a4qhf3y/libboost-python1.90-dev_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-thread1.90.0 loong64 1.90.0-6 [255 kB] Fetched 255 kB in 0s (16.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc_q1w9qu/libboost-thread1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libfreetype6 loong64 2.14.3+dfsg-1 [493 kB] Fetched 493 kB in 0s (27.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv9v2_989/libfreetype6_2.14.3+dfsg-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libstdc++-15-dev loong64 15.2.0-17 [6750 kB] Fetched 6750 kB in 0s (97.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphhzeggti/libstdc++-15-dev_15.2.0-17_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sysvinit-utils loong64 3.18-1 [29.9 kB] Fetched 29.9 kB in 0s (2334 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcuki5hit/sysvinit-utils_3.18-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtiff6 loong64 4.7.1-2 [348 kB] Fetched 348 kB in 0s (26.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw4xtx_hn/libtiff6_4.7.1-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 sgml-base all 1.31+nmu1 [10.9 kB] Fetched 10.9 kB in 0s (30.8 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp875yh6ln/sgml-base_1.31+nmu1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqhull-r8.0 loong64 2020.2-9 [241 kB] Fetched 241 kB in 0s (3646 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2nfq0gws/libqhull-r8.0_2020.2-9_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libglx-dev loong64 1.7.0-3+b1 [15.0 kB] Fetched 15.0 kB in 0s (1288 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5b9oy7o7/libglx-dev_1.7.0-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpam0g loong64 1.7.0-5+b2 [67.4 kB] Fetched 67.4 kB in 0s (5880 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz6is4hws/libpam0g_1.7.0-5+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libclipper-dev loong64 2.1.20201109-2+b4 [82.4 kB] Fetched 82.4 kB in 1s (55.6 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgkdycbjt/libclipper-dev_2.1.20201109-2+b4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgfortran5 loong64 16-20260425-1 [424 kB] Fetched 424 kB in 1s (441 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplpkp3n45/libgfortran5_16-20260425-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Fetched 517 kB in 1s (932 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz7p1b4g3/fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libaudit-common all 1:4.1.2-1 [14.3 kB] Fetched 14.3 kB in 0s (29.2 kB/s) dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpo0sigiwt/libaudit-common_4.1.2-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-fonttools loong64 4.62.1-7 [1648 kB] Fetched 1648 kB in 0s (70.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4mgac__s/python3-fonttools_4.62.1-7_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libsdl2-2.0-0 loong64 2.32.68+ds-1 [120 kB] Fetched 120 kB in 0s (7349 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp2sab5wa/libsdl2-2.0-0_2.32.68+ds-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libibverbs1 loong64 63.0-1 [61.8 kB] Fetched 61.8 kB in 0s (4207 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmw8zd76q/libibverbs1_63.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcbf1t64 loong64 0.9.7+dfsg1-5.1+b1 [357 kB] Fetched 357 kB in 0s (8975 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8g53zy5q/libcbf1t64_0.9.7+dfsg1-5.1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 grep loong64 3.12-1+b1 [445 kB] Fetched 445 kB in 0s (23.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy2lb7uvu/grep_3.12-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libfftw3-dev loong64 3.3.10-2+b2 [1362 kB] Fetched 1362 kB in 0s (64.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptngsgqbl/libfftw3-dev_3.3.10-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libk5crypto3 loong64 1.22.1-2+b1 [84.9 kB] Fetched 84.9 kB in 0s (5680 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo7sszgeq/libk5crypto3_1.22.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libc-dev-bin loong64 2.42-15 [36.9 kB] Fetched 36.9 kB in 0s (134 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprzeurvr5/libc-dev-bin_2.42-15_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-timer1.90-dev loong64 1.90.0-6 [239 kB] Fetched 239 kB in 0s (14.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc21xt7d0/libboost-timer1.90-dev_1.90.0-6_loong64.deb' Downloading dependency 246 of 671: libssh2-1t64:loong64=1.11.1-2 Downloading dependency 247 of 671: python3-wheel:loong64=0.47.0-1 Downloading dependency 248 of 671: fftw-dev:loong64=2.1.5-8 Downloading dependency 249 of 671: dbus-user-session:loong64=1.16.2-4 Downloading dependency 250 of 671: libpng16-16t64:loong64=1.6.58-1 Downloading dependency 251 of 671: libxxhash-dev:loong64=0.8.3-2+b2 Downloading dependency 252 of 671: libxfixes3:loong64=1:6.0.0-2+b5 Downloading dependency 253 of 671: libgles2:loong64=1.7.0-3+b1 Downloading dependency 254 of 671: binutils:loong64=2.46-3 Downloading dependency 255 of 671: libavif16:loong64=1.4.1-1+b1 Downloading dependency 256 of 671: libboost1.90-dev:loong64=1.90.0-6 Downloading dependency 257 of 671: libxcb-image0:loong64=0.4.0-2+b3 Downloading dependency 258 of 671: libepoxy0:loong64=1.5.10-2+b2 Downloading dependency 259 of 671: python3-scipy:loong64=1.16.3-4+b1 Downloading dependency 260 of 671: libblkid1:loong64=2.42-6 Downloading dependency 261 of 671: pkg-config:loong64=2.5.1-4 Downloading dependency 262 of 671: po-debconf:loong64=1.0.22 Downloading dependency 263 of 671: libgssrpc4t64:loong64=1.22.1-2+b1 Downloading dependency 264 of 671: python3-idna:loong64=3.11-1 Downloading dependency 265 of 671: fftw2:loong64=2.1.5-8 Downloading dependency 266 of 671: unicode-data:loong64=17.0.0-2 Downloading dependency 267 of 671: libmagic-mgc:loong64=1:5.46-5+b2 Downloading dependency 268 of 671: python3-minimal:loong64=3.13.9-3+b1 Downloading dependency 269 of 671: libunistring5:loong64=1.4.2-1 Downloading dependency 270 of 671: python3-inflect:loong64=7.5.0-1 Downloading dependency 271 of 671: libqt5designer5:loong64=5.15.17-4+b1 Downloading dependency 272 of 671: libtinfo6:loong64=6.6+20251231-1+b1 Downloading dependency 273 of 671: libann-cctbx0:loong64=1.1.2+doc-9+b1 Downloading dependency 274 of 671: libpcre2-32-0:loong64=10.46-1+b2 Downloading dependency 275 of 671: gettext:loong64=0.23.2-2 Downloading dependency 276 of 671: scons:loong64=4.10.1+dfsg-2 Downloading dependency 277 of 671: libtasn1-6-dev:loong64=4.21.0-2+b1 Downloading dependency 278 of 671: fonts-lyx:loong64=2.5.1-1 Downloading dependency 279 of 671: libpkgconf7:loong64=2.5.1-4 Downloading dependency 280 of 671: automake:loong64=1:1.18.1-4 Downloading dependency 281 of 671: libxxf86vm1:loong64=1:1.1.4-2+b1 Downloading dependency 282 of 671: make:loong64=4.4.1-3+b1 Downloading dependency 283 of 671: cpp-15-loongarch64-linux-gnu:loong64=15.2.0-17 Downloading dependency 284 of 671: libantlr3c-3.4-0:loong64=3.4+dfsg-4+b3 Downloading dependency 285 of 671: libgcc-15-dev:loong64=15.2.0-17 Downloading dependency 286 of 671: python3-urllib3:loong64=2.6.3-2 Downloading dependency 287 of 671: libkeyutils1:loong64=1.6.3-6+b2 Downloading dependency 288 of 671: pkgconf:loong64=2.5.1-4 Downloading dependency 289 of 671: librtmp1:loong64=2.6-1 Downloading dependency 290 of 671: gtk-update-icon-cache:loong64=4.22.3+ds-1 Downloading dependency 291 of 671: libqt5gui5t64:loong64=5.15.17+dfsg-8 Downloading dependency 292 of 671: libgmpxx4ldbl:loong64=2:6.3.0+dfsg-5+b2 Downloading dependency 293 of 671: intltool-debian:loong64=0.35.0+20060710.6 Downloading dependency 294 of 671: libpmix2t64:loong64=6.0.0+really5.0.9-3+b1 Downloading dependency 295 of 671: python3-jaraco.context:loong64=6.0.1-2 Downloading dependency 296 of 671: systemd:loong64=260.1-1 Downloading dependency 297 of 671: libkrb5-3:loong64=1.22.1-2+b1 Downloading dependency 298 of 671: liblerc-dev:loong64=4.1.0+ds-1 Downloading dependency 299 of 671: libwayland-client0:loong64=1.24.0-2+b2 Downloading dependency 300 of 671: libfftw3-long3:loong64=3.3.10-2+b2 Downloading dependency 301 of 671: libxcb-dri3-0:loong64=1.17.0-2+b2 Downloading dependency 302 of 671: libc-bin:loong64=2.42-15 Downloading dependency 303 of 671: libfuse3-4:loong64=3.18.2-2 Downloading dependency 304 of 671: dh-autoreconf:loong64=22 Downloading dependency 305 of 671: dbus:loong64=1.16.2-4 Downloading dependency 306 of 671: libimagequant0:loong64=4.4.1-1+b2 Downloading dependency 307 of 671: libmount1:loong64=2.42-6 Downloading dependency 308 of 671: libclipper2:loong64=2.1.20201109-2+b4 Downloading dependency 309 of 671: gcc-loongarch64-linux-gnu:loong64=4:15.2.0-5+b1 Downloading dependency 310 of 671: python3-dev:loong64=3.13.9-3+b1 Downloading dependency 311 of 671: libedit2:loong64=3.1-20251016-1+b1 Downloading dependency 312 of 671: libboost-atomic1.90-dev:loong64=1.90.0-6 Downloading dependency 313 of 671: python3.13-minimal:loong64=3.13.12-1 Downloading dependency 314 of 671: libgmp10:loong64=2:6.3.0+dfsg-5+b2 Downloading dependency 315 of 671: python3-contourpy:loong64=1.3.3-1+b1 Downloading dependency 316 of 671: python3-rlpycairo:loong64=0.3.0-4 Downloading dependency 317 of 671: xz-utils:loong64=5.8.3-1 Downloading dependency 318 of 671: libboost-numpy1.90.0:loong64=1.90.0-6 Downloading dependency 319 of 671: python3.13-dev:loong64=3.13.12-1 Downloading dependency 320 of 671: x11-common:loong64=1:7.7+26 Downloading dependency 321 of 671: python3-build:loong64=1.4.0-1 Downloading dependency 322 of 671: libheif1:loong64=1.21.2-4 Downloading dependency 323 of 671: libctf-nobfd0:loong64=2.46-3 Downloading dependency 324 of 671: libnotify4:loong64=0.8.8-1+b1 Downloading dependency 325 of 671: tzdata:loong64=2026b-1 Downloading dependency 326 of 671: libpython3-all-dev:loong64=3.13.9-3+b1 Downloading dependency 327 of 671: g++-loongarch64-linux-gnu:loong64=4:15.2.0-5+b1 Downloading dependency 328 of 671: libjq1:loong64=1.8.1-5 Downloading dependency 329 of 671: libatomic1:loong64=16-20260425-1 Downloading dependency 330 of 671: fonts-dejavu-mono:loong64=2.37-9 Downloading dependency 331 of 671: libfontenc1:loong64=1:1.1.8-1+b3 Downloading dependency 332 of 671: libraqm0:loong64=0.10.5-1 Downloading dependency 333 of 671: python3-all:loong64=3.13.9-3+b1 Downloading dependency 334 of 671: xtrans-dev:loong64=1.6.0-1 Downloading dependency 335 of 671: man-db:loong64=2.13.1-1+b1 Downloading dependency 336 of 671: libxcb-present0:loong64=1.17.0-2+b2 Downloading dependency 337 of 671: libxft2:loong64=2.3.6-1+b5 Downloading dependency 338 of 671: python3-chardet:loong64=5.2.0+dfsg-2 Downloading dependency 339 of 671: libxcb-xinerama0:loong64=1.17.0-2+b2 Downloading dependency 340 of 671: pybind11-dev:loong64=3.0.1-3 Downloading dependency 341 of 671: libavahi-common-data:loong64=0.8-18 Downloading dependency 342 of 671: libbrotli1:loong64=1.2.0-3 Downloading dependency 343 of 671: libp11-kit-dev:loong64=0.26.2-2 Downloading dependency 344 of 671: libdbus-1-3:loong64=1.16.2-4 Downloading dependency 345 of 671: libjbig-dev:loong64=2.1-6.1+b3 Downloading dependency 346 of 671: libqt5widgets5t64:loong64=5.15.17+dfsg-8 Downloading dependency 347 of 671: libz3-4:loong64=4.13.3-1+b2 Downloading dependency 348 of 671: dh-python:loong64=7.20260309 Downloading dependency 349 of 671: libhwloc-plugins:loong64=2.13.0-2 Downloading dependency 350 of 671: libxau-dev:loong64=1:1.0.11-1+b2 Downloading dependency 351 of 671: libboost-exception1.90-dev:loong64=1.90.0-6 Downloading dependency 352 of 671: libegl1:loong64=1.7.0-3+b1 Downloading dependency 353 of 671: python3-cairo:loong64=1.27.0-2+b1 Downloading dependency 354 of 671: libxkbcommon0:loong64=1.13.1-1 Downloading dependency 355 of 671: python3-typing-extensions:loong64=4.15.0-2 Downloading dependency 356 of 671: libqt5opengl5t64:loong64=5.15.17+dfsg-8 Downloading dependency 357 of 671: perl-modules-5.40:loong64=5.40.1-7 Downloading dependency 358 of 671: libboost-thread1.90-dev:loong64=1.90.0-6 Downloading dependency 359 of 671: libfribidi0:loong64=1.0.16-5+b1 Downloading dependency 360 of 671: libmtdev1t64:loong64=1.1.7-1+b2 Downloading dependency 361 of 671: libjpeg-dev:loong64=1:3.1.3-4 Downloading dependency 362 of 671: libssm-dev:loong64=1.4.0-2+b4 Downloading dependency 363 of 671: libgbm1:loong64=26.0.6-1 Downloading dependency 364 of 671: libsharpyuv-dev:loong64=1.5.0-0.1+b2 Downloading dependency 365 of 671: libfftw3-double3:loong64=3.3.10-2+b2 Downloading dependency 366 of 671: netbase:loong64=6.5 Downloading dependency 367 of 671: sphinx-rtd-theme-common:loong64=3.1.0+dfsg-1Get:1 http://deb.debian.org/debian unstable/main loong64 libxdamage1 loong64 1:1.1.7-1+b1 [16.4 kB] Fetched 16.4 kB in 0s (1495 kB/s) dpkg-name: info: moved 'libxdamage1_1%3a1.1.7-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpy_1vhsya/libxdamage1_1.1.7-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libpython3.13-minimal loong64 3.13.12-1 [868 kB] Fetched 868 kB in 0s (50.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmvq5mfqt/libpython3.13-minimal_3.13.12-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-numpy-dev loong64 1:2.4.4+ds-2 [179 kB] Fetched 179 kB in 0s (15.6 MB/s) dpkg-name: info: moved 'python3-numpy-dev_1%3a2.4.4+ds-2_loong64.deb' to '/srv/rebuilderd/tmp/tmpktrpamu9/python3-numpy-dev_2.4.4+ds-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dpkg-dev all 1.23.7 [1318 kB] Fetched 1318 kB in 0s (54.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ollxzw6/dpkg-dev_1.23.7_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libdrm-amdgpu1 loong64 2.4.131-1+b1 [23.0 kB] Fetched 23.0 kB in 0s (1427 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp62_mp584/libdrm-amdgpu1_2.4.131-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-nxmx all 0.0.7-1 [16.7 kB] Fetched 16.7 kB in 0s (42.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2e5l91_e/python3-nxmx_0.0.7-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 cpp-15 loong64 15.2.0-17 [1284 B] Fetched 1284 B in 0s (88.0 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplt6x6c0t/cpp-15_15.2.0-17_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libapparmor1 loong64 4.1.7-2 [37.1 kB] Fetched 37.1 kB in 0s (2515 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp85wz_hnd/libapparmor1_4.1.7-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Fetched 12.0 kB in 0s (1086 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyh9p7buq/python3-jaraco.functools_4.1.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python-matplotlib-data all 3.10.7+dfsg1-3 [2733 kB] Fetched 2733 kB in 0s (73.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpprx13aoe/python-matplotlib-data_3.10.7+dfsg1-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libncursesw6 loong64 6.6+20251231-1+b1 [137 kB] Fetched 137 kB in 0s (11.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpd_f63q9t/libncursesw6_6.6+20251231-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 adwaita-icon-theme all 50.0-1 [506 kB] Fetched 506 kB in 0s (33.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpkgz6j4nu/adwaita-icon-theme_50.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 glycin-loaders loong64 2.0.8-1 [2641 kB] Fetched 2641 kB in 0s (22.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7i_n9gpi/glycin-loaders_2.0.8-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 xorg-sgml-doctools all 1:1.12.1-1 [23.9 kB] Fetched 23.9 kB in 0s (2334 kB/s) dpkg-name: info: moved 'xorg-sgml-doctools_1%3a1.12.1-1_all.deb' to '/srv/rebuilderd/tmp/tmpah3llj5r/xorg-sgml-doctools_1.12.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libglut3.12 loong64 3.4.0-6+b2 [138 kB] Fetched 138 kB in 0s (12.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2zijtuq3/libglut3.12_3.4.0-6+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 debianutils loong64 5.23.2+b1 [92.8 kB] Fetched 92.8 kB in 1s (110 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf8t3xwk8/debianutils_5.23.2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcbf-dev loong64 0.9.7+dfsg1-5.1+b1 [1246 kB] Fetched 1246 kB in 1s (1575 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp7w6hj4i/libcbf-dev_0.9.7+dfsg1-5.1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwacom-common all 2.18.0-1 [117 kB] Fetched 117 kB in 0s (7990 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe7pax9pg/libwacom-common_2.18.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libasound2-data all 1.2.15.3-1 [21.2 kB] Fetched 21.2 kB in 0s (1498 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpag9321ju/libasound2-data_1.2.15.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 ncurses-base all 6.6+20251231-1 [277 kB] Fetched 277 kB in 0s (21.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp51nyh909/ncurses-base_6.6+20251231-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-biopython loong64 1.86+dfsg-1+b1 [1620 kB] Fetched 1620 kB in 1s (1337 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0bwwnb50/python3-biopython_1.86+dfsg-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-reportlab all 4.4.10-1 [1173 kB] Fetched 1173 kB in 0s (25.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2f6svx73/python3-reportlab_4.4.10-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-attr all 26.1.0-1 [72.2 kB] Fetched 72.2 kB in 0s (6606 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp344p8m0x/python3-attr_26.1.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 init-system-helpers all 1.69 [39.3 kB] Fetched 39.3 kB in 0s (3926 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp64r_f_82/init-system-helpers_1.69_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-date-time1.90-dev loong64 1.90.0-6 [231 kB] Fetched 231 kB in 0s (2721 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplisa9_0b/libboost-date-time1.90-dev_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 groff-base loong64 1.24.1-1 [1314 kB] Fetched 1314 kB in 0s (28.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphkulnjho/groff-base_1.24.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxslt1.1 loong64 1.1.45-0.1 [157 kB] Fetched 157 kB in 0s (13.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92t_rgam/libxslt1.1_1.1.45-0.1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-decorator all 5.2.1-2 [33.0 kB] Fetched 33.0 kB in 0s (3207 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyy920xm3/python3-decorator_5.2.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblzma-dev loong64 5.8.3-1 [503 kB] Fetched 503 kB in 0s (35.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmjksuwyf/liblzma-dev_5.8.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pygments all 2.19.2+dfsg-1 [847 kB] Fetched 847 kB in 0s (50.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb14dxlz_/python3-pygments_2.19.2+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmmdb2-dev loong64 2.0.22-1+b3 [93.0 kB] Fetched 93.0 kB in 0s (7279 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdqa4r2x0/libmmdb2-dev_2.0.22-1+b3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libjpeg62-turbo loong64 1:3.1.3-4 [208 kB] Fetched 208 kB in 0s (6320 kB/s) dpkg-name: info: moved 'libjpeg62-turbo_1%3a3.1.3-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpqtvd_eha/libjpeg62-turbo_3.1.3-4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libc6-dev loong64 2.42-15 [3278 kB] Fetched 3278 kB in 0s (51.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphfa4uctc/libc6-dev_2.42-15_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-zopfli loong64 0.4.1-1 [10.8 kB] Fetched 10.8 kB in 0s (192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprs9v8ur3/python3-zopfli_0.4.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pil loong64 12.2.0-1 [556 kB] Fetched 556 kB in 0s (13.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqqy7xdo2/python3-pil_12.2.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libglu1-mesa-dev loong64 9.0.2-1.1+b4 [588 kB] Fetched 588 kB in 0s (40.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv7ztc5sm/libglu1-mesa-dev_9.0.2-1.1+b4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 debhelper all 13.31 [932 kB] Fetched 932 kB in 0s (22.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_q50on4b/debhelper_13.31_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libcurl4-openssl-dev loong64 8.20.0-1 [1287 kB] Fetched 1287 kB in 0s (61.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnrl03g4a/libcurl4-openssl-dev_8.20.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libopus0 loong64 1.6.1-1+b1 [3444 kB] Fetched 3444 kB in 0s (8715 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4un9486y/libopus0_1.6.1-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pint all 0.25.3-1 [231 kB] Fetched 231 kB in 1s (384 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn46zs37v/python3-pint_0.25.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libtiff-dev loong64 4.7.1-2 [815 kB] Fetched 815 kB in 0s (46.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0ltrd1qv/libtiff-dev_4.7.1-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libaom3 loong64 3.13.1-2+b1 [1282 kB] Fetched 1282 kB in 0s (64.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_ujh9ggx/libaom3_3.13.1-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libp11-kit0 loong64 0.26.2-2 [431 kB] Fetched 431 kB in 0s (6057 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6tbkv52p/libp11-kit0_0.26.2-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libpython3.13-stdlib loong64 3.13.12-1 [1946 kB] Fetched 1946 kB in 0s (75.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0rgumzrc/libpython3.13-stdlib_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwxgtk-gl3.2-1t64 loong64 3.2.9+dfsg-1+b1 [87.3 kB] Fetched 87.3 kB in 0s (348 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3fq22up8/libwxgtk-gl3.2-1t64_3.2.9+dfsg-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 linux-libc-dev all 6.19.14-1 [1985 kB] Fetched 1985 kB in 0s (7442 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplok53zb2/linux-libc-dev_6.19.14-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-kiwisolver loong64 1.5.0-1 [75.6 kB] Fetched 75.6 kB in 0s (7264 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfd9wcc17/python3-kiwisolver_1.5.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pyqt5.sip loong64 12.18.0-1 [74.7 kB] Fetched 74.7 kB in 0s (4807 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnco24v9t/python3-pyqt5.sip_12.18.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libfontconfig1 loong64 2.17.1-5 [137 kB] Fetched 137 kB in 0s (3098 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphmubcobq/libfontconfig1_2.17.1-5_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgdbm6t64 loong64 1.26-1+b2 [78.7 kB] Fetched 78.7 kB in 0s (7615 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpnpk11t9o/libgdbm6t64_1.26-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-chrono1.90.0 loong64 1.90.0-6 [231 kB] Fetched 231 kB in 0s (10.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp_aooh0o5/libboost-chrono1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcrypt1 loong64 1:4.5.1-1+b1 [97.5 kB] Fetched 97.5 kB in 0s (8921 kB/s) dpkg-name: info: moved 'libcrypt1_1%3a4.5.1-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpqoif9fhx/libcrypt1_4.5.1-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 at-spi2-common all 2.60.3-1 [173 kB] Fetched 173 kB in 0s (14.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpymxoxzsu/at-spi2-common_2.60.3-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pyparsing all 3.3.2-2 [165 kB] Fetched 165 kB in 0s (14.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo76830st/python3-pyparsing_3.3.2-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-zipp all 3.23.0-1 [11.0 kB] Fetched 11.0 kB in 0s (1088 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmltdm479/python3-zipp_3.23.0-1_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 perl-base loong64 5.40.1-7+b1 [1665 kB] Fetched 1665 kB in 0s (70.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0c7pj1uv/perl-base_5.40.1-7+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libavahi-client3 loong64 0.8-18 [48.5 kB] Fetched 48.5 kB in 0s (4687 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsd5a2xm2/libavahi-client3_0.8-18_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3.14-minimal loong64 3.14.5~rc1-1 [2324 kB] Fetched 2324 kB in 0s (76.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe3s__0w8/python3.14-minimal_3.14.5~rc1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libreadline8t64 loong64 8.3-4 [181 kB] Fetched 181 kB in 0s (6633 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeewzaw3o/libreadline8t64_8.3-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxtst6 loong64 2:1.2.5-1+b2 [26.9 kB] Fetched 26.9 kB in 0s (2599 kB/s) dpkg-name: info: moved 'libxtst6_2%3a1.2.5-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpesbbvplx/libxtst6_1.2.5-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-ufolib2 all 0.18.1+dfsg1-1 [33.2 kB] Fetched 33.2 kB in 0s (3222 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplr78nxfh/python3-ufolib2_0.18.1+dfsg1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-python1.90.0 loong64 1.90.0-6 [335 kB] Fetched 335 kB in 0s (19.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk3m1lq7e/libboost-python1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libharfbuzz-subset0 loong64 12.3.2-2+b2 [559 kB] Fetched 559 kB in 0s (37.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph2wps3_x/libharfbuzz-subset0_12.3.2-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libarchive-zip-perl all 1.68-1 [104 kB] Fetched 104 kB in 0s (7328 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3x4mkzpj/libarchive-zip-perl_1.68-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 pymol-data all 3.1.0+dfsg-1 [1430 kB] Fetched 1430 kB in 1s (2064 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphyfctlgk/pymol-data_3.1.0+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhdf5-hl-cpp-310 loong64 1.14.6+repack-2+b1 [18.4 kB] Fetched 18.4 kB in 0s (1267 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz8o_g9d8/libhdf5-hl-cpp-310_1.14.6+repack-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpango-1.0-0 loong64 1.57.1-2 [230 kB] Fetched 230 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpoi7heif7/libpango-1.0-0_1.57.1-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-test1.90.0 loong64 1.90.0-6 [460 kB] Fetched 460 kB in 0s (3192 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl5b3ks14/libboost-test1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxxhash0 loong64 0.8.3-2+b2 [20.5 kB] Fetched 20.5 kB in 0s (2017 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjavqy3x2/libxxhash0_0.8.3-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libstdc++6 loong64 16-20260425-1 [763 kB] Fetched 763 kB in 0s (18.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6txi5ygd/libstdc++6_16-20260425-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260604T082513Z unstable/main loong64 libuuid1 loong64 2.42-6 [32.6 kB] Fetched 32.6 kB in 0s (608 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpvrnezkn0/libuuid1_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libx11-dev loong64 2:1.8.13-1 [1470 kB] Fetched 1470 kB in 0s (66.5 MB/s) dpkg-name: info: moved 'libx11-dev_2%3a1.8.13-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpdz8sdnuc/libx11-dev_1.8.13-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libngtcp2-crypto-ossl-dev loong64 1.22.1-1 [42.6 kB] Fetched 42.6 kB in 0s (2910 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7s0_8ey8/libngtcp2-crypto-ossl-dev_1.22.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 binutils-common loong64 2.46-3 [2632 kB] Fetched 2632 kB in 0s (41.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpjt3l_av1/binutils-common_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libheif-plugin-libde265 loong64 1.21.2-4 [16.5 kB] Fetched 16.5 kB in 0s (1571 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpy4qd16h_/libheif-plugin-libde265_1.21.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-shm0 loong64 1.17.0-2+b2 [105 kB] Fetched 105 kB in 0s (9276 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp0jr7lob2/libxcb-shm0_1.17.0-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260604T082513Z unstable/main loong64 util-linux loong64 2.42-6 [1200 kB] Fetched 1200 kB in 0s (14.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppx94b7jt/util-linux_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-uharfbuzz loong64 0.53.3-1 [203 kB] Fetched 203 kB in 0s (17.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsutbqvw5/python3-uharfbuzz_0.53.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcolord2 loong64 1.4.8-3 [138 kB] Fetched 138 kB in 0s (13.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbjqr2trk/libcolord2_1.4.8-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libccp4f0t64 loong64 8.0.0-5+b1 [188 kB] Fetched 188 kB in 0s (7482 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9oadza7x/libccp4f0t64_8.0.0-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhdf5-cpp-310 loong64 1.14.6+repack-2+b1 [122 kB] Fetched 122 kB in 0s (11.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl4zm7g_s/libhdf5-cpp-310_1.14.6+repack-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libssl3t64 loong64 3.6.2-1 [2155 kB] Fetched 2155 kB in 0s (78.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpmafiv7gi/libssl3t64_3.6.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-python-dev loong64 1.90.0.2 [3160 B] Fetched 3160 B in 0s (59.9 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp89zzqqcb/libboost-python-dev_1.90.0.2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 hostname loong64 3.25+b1 [11.2 kB] Fetched 11.2 kB in 0s (786 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpya1a_7lc/hostname_3.25+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-atomic1.90.0 loong64 1.90.0-6 [226 kB] Fetched 226 kB in 0s (19.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp96pdj331/libboost-atomic1.90.0_1.90.0-6_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260604T082513Z unstable/main loong64 libsmartcols1 loong64 2.42-6 [150 kB] Fetched 150 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc0jpyq9q/libsmartcols1_2.42-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-util1 loong64 0.4.1-1+b2 [23.7 kB] Fetched 23.7 kB in 0s (2338 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxyf3cdhx/libxcb-util1_0.4.1-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-sympy all 1.14.0-3 [4226 kB] Fetched 4226 kB in 0s (84.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp2lautlni/python3-sympy_1.14.0-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-serialization1.90.0 loong64 1.90.0-6 [326 kB] Fetched 326 kB in 0s (10.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9gihj65j/libboost-serialization1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 fonts-urw-base35 all 20200910-9 [10.8 MB] Fetched 10.8 MB in 1s (13.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp50q10sic/fonts-urw-base35_20200910-9_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-thread-dev loong64 1.90.0.2 [2884 B] Fetched 2884 B in 0s (218 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdndjj111/libboost-thread-dev_1.90.0.2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 systemd-sysv loong64 260.1-1 [37.4 kB] Fetched 37.4 kB in 0s (3690 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbxvctyu1/systemd-sysv_260.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libice6 loong64 2:1.1.1-1+b2 [65.2 kB] Fetched 65.2 kB in 0s (5955 kB/s) dpkg-name: info: moved 'libice6_2%3a1.1.1-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmp14qx8zn3/libice6_1.1.1-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libvulkan1 loong64 1.4.341.0-1 [135 kB] Fetched 135 kB in 0s (12.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzdah0s9l/libvulkan1_1.4.341.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libyuv0 loong64 0.0.1922.20260106-1+b1 [144 kB] Fetched 144 kB in 0s (9172 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpl4b44t78/libyuv0_0.0.1922.20260106-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 glycin-thumbnailers loong64 2.0.8-1 [980 kB] Fetched 980 kB in 0s (54.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptzdz75pk/glycin-thumbnailers_2.0.8-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libflac14 loong64 1.5.0+ds-5+b1 [163 kB] Fetched 163 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdw_poj83/libflac14_1.5.0+ds-5+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-timer-dev loong64 1.90.0.2 [2984 B] Fetched 2984 B in 0s (123 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3ntt8py9/libboost-timer-dev_1.90.0.2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libpython3.14-dev loong64 3.14.5~rc1-1 [17.1 MB] Fetched 17.1 MB in 0s (91.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqhsuwi6e/libpython3.14-dev_3.14.5~rc1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libx11-data all 2:1.8.13-1 [346 kB] Fetched 346 kB in 0s (2127 kB/s) dpkg-name: info: moved 'libx11-data_2%3a1.8.13-1_all.deb' to '/srv/rebuilderd/tmp/tmp93lk43ax/libx11-data_1.8.13-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libfabric1 loong64 2.1.0-1.1+b2 [589 kB] Fetched 589 kB in 0s (31.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpfa3f1ct1/libfabric1_2.1.0-1.1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnettle8t64 loong64 3.10.2-1+b1 [313 kB] Fetched 313 kB in 0s (1019 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpq373mf19/libnettle8t64_3.10.2-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-render0 loong64 1.17.0-2+b2 [115 kB] Fetched 115 kB in 0s (234 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp8vqhp61b/libxcb-render0_1.17.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libngtcp2-16 loong64 1.22.1-1 [134 kB] Fetched 134 kB in 0s (969 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp49u1li_d/libngtcp2-16_1.22.1-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwebpdemux2 loong64 1.5.0-0.1+b2 [113 kB] Fetched 113 kB in 0s (9872 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpv_2l1j2d/libwebpdemux2_1.5.0-0.1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdb5.3t64 loong64 5.3.28+dfsg2-11+b1 [711 kB] Fetched 711 kB in 0s (45.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbf20fz5/libdb5.3t64_5.3.28+dfsg2-11+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-cycler all 0.12.1-2 [9616 B] Fetched 9616 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphn7gv8e7/python3-cycler_0.12.1-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxrandr2 loong64 2:1.5.4-1+b4 [36.9 kB] Fetched 36.9 kB in 0s (2634 kB/s) dpkg-name: info: moved 'libxrandr2_2%3a1.5.4-1+b4_loong64.deb' to '/srv/rebuilderd/tmp/tmp2fduo5_e/libxrandr2_1.5.4-1+b4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 findutils loong64 4.10.0-4 [704 kB] Fetched 704 kB in 0s (44.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpndz1xala/findutils_4.10.0-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libjpeg62-turbo-dev loong64 1:3.1.3-4 [604 kB] Fetched 604 kB in 0s (2365 kB/s) dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a3.1.3-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpmp78d339/libjpeg62-turbo-dev_3.1.3-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-tk loong64 3.13.9-3+b1 [8636 B] Fetched 8636 B in 0s (808 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpzf8z2gh7/python3-tk_3.13.9-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libssh2-1-dev loong64 1.11.1-2 [576 kB] Fetched 576 kB in 0s (37.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn5k0rs9d/libssh2-1-dev_1.11.1-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-matplotlib loong64 3.10.7+dfsg1-3 [22.7 MB] Fetched 22.7 MB in 1s (42.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw4k3el7f/python3-matplotlib_3.10.7+dfsg1-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libaudit1 loong64 1:4.1.2-1+b1 [61.2 kB] Fetched 61.2 kB in 0s (3935 kB/s) dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpvvv1o96e/libaudit1_4.1.2-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmmdb2-0 loong64 2.0.22-1+b3 [339 kB] Fetched 339 kB in 0s (19.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpn3su8dty/libmmdb2-0_2.0.22-1+b3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-shape0 loong64 1.17.0-2+b2 [105 kB] Fetched 105 kB in 0s (500 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp_tm8sd2/libxcb-shape0_1.17.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnghttp3-dev loong64 1.15.0-1 [194 kB] Fetched 194 kB in 0s (15.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5nvsg07y/libnghttp3-dev_1.15.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblzma5 loong64 5.8.3-1 [323 kB] Fetched 323 kB in 0s (19.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6o0jkwe0/liblzma5_5.8.3-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-flexcache all 0.3-3 [13.7 kB] Fetched 13.7 kB in 0s (1357 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbc28s1un/python3-flexcache_0.3-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 xfonts-utils loong64 1:7.7+7+b1 [92.5 kB] Fetched 92.5 kB in 0s (5738 kB/s) dpkg-name: info: moved 'xfonts-utils_1%3a7.7+7+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmp5h9br43u/xfonts-utils_7.7+7+b1_loong64.deb' Downloading dependency 368 of 671: python3-iniconfig:loong64=2.1.0-2 Downloading dependency 369 of 671: libjxl0.11:loong64=0.11.2-1 Downloading dependency 370 of 671: libdpkg-perl:loong64=1.23.7 Downloading dependency 371 of 671: libvorbis0a:loong64=1.3.7-3+b2 Downloading dependency 372 of 671: libmp3lame0:loong64=3.101~svn6531+dfsg-1 Downloading dependency 373 of 671: libevent-pthreads-2.1-7t64:loong64=2.1.12-stable-10+b2 Downloading dependency 374 of 671: libfftw3-single3:loong64=3.3.10-2+b2 Downloading dependency 375 of 671: libqt5printsupport5t64:loong64=5.15.17+dfsg-8 Downloading dependency 376 of 671: libqt5help5:loong64=5.15.17-4+b1 Downloading dependency 377 of 671: hdf5-helpers:loong64=1.14.6+repack-2+b1 Downloading dependency 378 of 671: libegl-mesa0:loong64=26.0.6-1 Downloading dependency 379 of 671: pkgconf-bin:loong64=2.5.1-4 Downloading dependency 380 of 671: libxcb-glx0:loong64=1.17.0-2+b2 Downloading dependency 381 of 671: libblas3:loong64=3.12.1-7+b2 Downloading dependency 382 of 671: python3-pathspec:loong64=1.0.4-1 Downloading dependency 383 of 671: libzstd-dev:loong64=1.5.7+dfsg-3+b2 Downloading dependency 384 of 671: libnghttp2-dev:loong64=1.69.0-1 Downloading dependency 385 of 671: libopengl0:loong64=1.7.0-3+b1 Downloading dependency 386 of 671: libnghttp3-9:loong64=1.15.0-1 Downloading dependency 387 of 671: libhogweed6t64:loong64=3.10.2-1+b1 Downloading dependency 388 of 671: python3-tqdm:loong64=4.67.3-1 Downloading dependency 389 of 671: gcc:loong64=4:15.2.0-5+b1 Downloading dependency 390 of 671: libsensors-config:loong64=1:3.6.2-2 Downloading dependency 391 of 671: liblz4-1:loong64=1.10.0-10 Downloading dependency 392 of 671: libcap2:loong64=1:2.78-1 Downloading dependency 393 of 671: libllvm21:loong64=1:21.1.8-7+b1 Downloading dependency 394 of 671: libevent-2.1-7t64:loong64=2.1.12-stable-10+b2 Downloading dependency 395 of 671: python3-trove-classifiers:loong64=2026.1.14.14-1 Downloading dependency 396 of 671: libcc1-0:loong64=16-20260425-1 Downloading dependency 397 of 671: libdecor-0-0:loong64=0.2.5-1+b1 Downloading dependency 398 of 671: libqt5network5t64:loong64=5.15.17+dfsg-8 Downloading dependency 399 of 671: mount:loong64=2.42-6 Downloading dependency 400 of 671: libatspi2.0-0t64:loong64=2.60.3-1 Downloading dependency 401 of 671: libatk1.0-0t64:loong64=2.60.3-1 Downloading dependency 402 of 671: libtcl8.6:loong64=8.6.17+dfsg-1+b2 Downloading dependency 403 of 671: python3-pluggy:loong64=1.6.0-2 Downloading dependency 404 of 671: libxdmcp6:loong64=1:1.1.5-2+b1 Downloading dependency 405 of 671: libxdmcp-dev:loong64=1:1.1.5-2+b1 Downloading dependency 406 of 671: ca-certificates:loong64=20260223 Downloading dependency 407 of 671: libgpg-error0:loong64=1.59-4 Downloading dependency 408 of 671: bash:loong64=5.3-3 Downloading dependency 409 of 671: libglycin-2-0:loong64=2.0.8-1 Downloading dependency 410 of 671: python3-opengl:loong64=3.1.10+dfsg-1 Downloading dependency 411 of 671: libubsan1:loong64=16-20260425-1 Downloading dependency 412 of 671: libboost-graph1.90.0:loong64=1.90.0-6 Downloading dependency 413 of 671: libxinerama1:loong64=2:1.1.4-3+b5 Downloading dependency 414 of 671: libsz2:loong64=1.1.6-1 Downloading dependency 415 of 671: gcc-15:loong64=15.2.0-17 Downloading dependency 416 of 671: libboost-graph1.90-dev:loong64=1.90.0-6 Downloading dependency 417 of 671: libxcb-xfixes0:loong64=1.17.0-2+b2 Downloading dependency 418 of 671: libgcc-s1:loong64=16-20260425-1 Downloading dependency 419 of 671: python3-mpmath:loong64=1.4.1-2 Downloading dependency 420 of 671: rsync:loong64=3.4.2+ds1-2 Downloading dependency 421 of 671: libharfbuzz0b:loong64=12.3.2-2+b2 Downloading dependency 422 of 671: dh-exec:loong64=0.31+b2 Downloading dependency 423 of 671: libevent-core-2.1-7t64:loong64=2.1.12-stable-10+b2 Downloading dependency 424 of 671: libunbound8:loong64=1.25.0-1 Downloading dependency 425 of 671: bzip2:loong64=1.0.8-6+b2 Downloading dependency 426 of 671: libtool:loong64=2.5.4-11 Downloading dependency 427 of 671: libatk-bridge2.0-0t64:loong64=2.60.3-1 Downloading dependency 428 of 671: libxnvctrl0:loong64=535.171.04-1+b3 Downloading dependency 429 of 671: fontconfig-config:loong64=2.17.1-5 Downloading dependency 430 of 671: tar:loong64=1.35+dfsg-4 Downloading dependency 431 of 671: libxres1:loong64=2:1.2.1-2 Downloading dependency 432 of 671: libdouble-conversion3:loong64=3.4.0-1+b1 Downloading dependency 433 of 671: openssl-provider-legacy:loong64=3.6.2-1 Downloading dependency 434 of 671: libxcursor1:loong64=1:1.2.3-1+b2 Downloading dependency 435 of 671: libpam-systemd:loong64=260.1-1 Downloading dependency 436 of 671: libhdf5-dev:loong64=1.14.6+repack-2+b1 Downloading dependency 437 of 671: liblsan0:loong64=16-20260425-1 Downloading dependency 438 of 671: libgomp1:loong64=16-20260425-1 Downloading dependency 439 of 671: mawk:loong64=1.3.4.20260302-1 Downloading dependency 440 of 671: libtk8.6:loong64=8.6.17-1+b2 Downloading dependency 441 of 671: libpcre2-8-0:loong64=10.46-1+b2 Downloading dependency 442 of 671: libqt5dbus5t64:loong64=5.15.17+dfsg-8 Downloading dependency 443 of 671: libgav1-2:loong64=0.20.0-2+b1 Downloading dependency 444 of 671: libccp4c0t64:loong64=8.0.0-5+b1 Downloading dependency 445 of 671: dash:loong64=0.5.12-12+b1 Downloading dependency 446 of 671: libheif-plugin-dav1d:loong64=1.21.2-4 Downloading dependency 447 of 671: libbinutils:loong64=2.46-3 Downloading dependency 448 of 671: gcc-15-base:loong64=15.2.0-17 Downloading dependency 449 of 671: libpython3.14-minimal:loong64=3.14.5~rc1-1 Downloading dependency 450 of 671: libantlr3c-dev:loong64=3.4+dfsg-4+b3 Downloading dependency 451 of 671: libxi6:loong64=2:1.8.2-2+b1 Downloading dependency 452 of 671: libglx-mesa0:loong64=26.0.6-1 Downloading dependency 453 of 671: python3-six:loong64=1.17.0-2 Downloading dependency 454 of 671: cpp-loongarch64-linux-gnu:loong64=4:15.2.0-5+b1 Downloading dependency 455 of 671: base-passwd:loong64=3.6.8+b1 Downloading dependency 456 of 671: libxkbcommon-x11-0:loong64=1.13.1-1 Downloading dependency 457 of 671: libthai-data:loong64=0.1.30-1 Downloading dependency 458 of 671: libglu1-mesa:loong64=9.0.2-1.1+b4 Downloading dependency 459 of 671: g++-15-loongarch64-linux-gnu:loong64=15.2.0-17 Downloading dependency 460 of 671: libwxgtk3.2-1t64:loong64=3.2.9+dfsg-1+b1 Downloading dependency 461 of 671: python3-requests:loong64=2.32.5+dfsg-1 Downloading dependency 462 of 671: liblerc4:loong64=4.1.0+ds-1 Downloading dependency 463 of 671: libcloudproviders0:loong64=0.4.0-2+b1 Downloading dependency 464 of 671: libboost-python1.90-dev:loong64=1.90.0-6 Downloading dependency 465 of 671: libboost-thread1.90.0:loong64=1.90.0-6 Downloading dependency 466 of 671: libfreetype6:loong64=2.14.3+dfsg-1 Downloading dependency 467 of 671: libstdc++-15-dev:loong64=15.2.0-17 Downloading dependency 468 of 671: sysvinit-utils:loong64=3.18-1 Downloading dependency 469 of 671: libtiff6:loong64=4.7.1-2 Downloading dependency 470 of 671: sgml-base:loong64=1.31+nmu1 Downloading dependency 471 of 671: libqhull-r8.0:loong64=2020.2-9 Downloading dependency 472 of 671: libglx-dev:loong64=1.7.0-3+b1 Downloading dependency 473 of 671: libpam0g:loong64=1.7.0-5+b2 Downloading dependency 474 of 671: libclipper-dev:loong64=2.1.20201109-2+b4 Downloading dependency 475 of 671: libgfortran5:loong64=16-20260425-1 Downloading dependency 476 of 671: fonts-font-awesome:loong64=5.0.10+really4.7.0~dfsg-4.1 Downloading dependency 477 of 671: libaudit-common:loong64=1:4.1.2-1 Downloading dependency 478 of 671: python3-fonttools:loong64=4.62.1-7 Downloading dependency 479 of 671: libsdl2-2.0-0:loong64=2.32.68+ds-1 Downloading dependency 480 of 671: libibverbs1:loong64=63.0-1 Downloading dependency 481 of 671: libcbf1t64:loong64=0.9.7+dfsg1-5.1+b1 Downloading dependency 482 of 671: grep:loong64=3.12-1+b1 Downloading dependency 483 of 671: libfftw3-dev:loong64=3.3.10-2+b2 Downloading dependency 484 of 671: libk5crypto3:loong64=1.22.1-2+b1 Downloading dependency 485 of 671: libc-dev-bin:loong64=2.42-15 Downloading dependency 486 of 671: libboost-timer1.90-dev:loong64=1.90.0-6 Downloading dependency 487 of 671: libxdamage1:loong64=1:1.1.7-1+b1Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libinput10 loong64 1.31.1-1 [154 kB] Fetched 154 kB in 0s (13.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdlyaeykc/libinput10_1.31.1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libwayland-egl1 loong64 1.24.0-2+b2 [5704 B] Fetched 5704 B in 0s (399 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpld25mdg9/libwayland-egl1_1.24.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwxbase3.2-1t64 loong64 3.2.9+dfsg-1+b1 [1012 kB] Fetched 1012 kB in 0s (53.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu6ewr15q/libwxbase3.2-1t64_3.2.9+dfsg-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libgl1-mesa-dri loong64 26.0.6-1 [43.0 kB] Fetched 43.0 kB in 0s (2875 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk2nll3km/libgl1-mesa-dri_26.0.6-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libmd0 loong64 1.1.0-2+b2 [32.9 kB] Fetched 32.9 kB in 0s (3064 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1t9c6f7f/libmd0_1.1.0-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 x11proto-dev all 2025.1-1 [605 kB] Fetched 605 kB in 0s (39.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdnxfv6tm/x11proto-dev_2025.1-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnl-route-3-200 loong64 3.12.0-2+b1 [194 kB] Fetched 194 kB in 0s (16.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpk7aqacyx/libnl-route-3-200_3.12.0-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgl-dev loong64 1.7.0-3+b1 [99.9 kB] Fetched 99.9 kB in 0s (8858 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpji6a8iez/libgl-dev_1.7.0-3+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libsframe3 loong64 2.46-3 [85.8 kB] Fetched 85.8 kB in 0s (7698 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbugkvzs/libsframe3_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libdconf1 loong64 0.49.0-4+b1 [42.4 kB] Fetched 42.4 kB in 0s (397 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpe8ze7brt/libdconf1_0.49.0-4+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-psutil loong64 7.1.0-1+b1 [224 kB] Fetched 224 kB in 0s (18.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9028rg0n/python3-psutil_7.1.0-1+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libmpg123-0t64 loong64 1.33.5-1 [143 kB] Fetched 143 kB in 0s (12.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmph5su_rxx/libmpg123-0t64_1.33.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnl-3-200 loong64 3.12.0-2+b1 [61.4 kB] Fetched 61.4 kB in 0s (6040 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5hwekvwh/libnl-3-200_3.12.0-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsndfile1 loong64 1.2.2-4+b1 [204 kB] Fetched 204 kB in 0s (17.2 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp1mfq8vo9/libsndfile1_1.2.2-4+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 openssl loong64 3.6.2-1 [1496 kB] Fetched 1496 kB in 0s (37.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpycs_aoul/openssl_3.6.2-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-container1.90-dev loong64 1.90.0-6 [322 kB] Fetched 322 kB in 0s (25.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4jkutcxd/libboost-container1.90-dev_1.90.0-6_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-certifi all 2026.4.22+ds-1 [9684 B] Fetched 9684 B in 0s (960 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7p4ozll5/python3-certifi_2026.4.22+ds-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgnutls28-dev loong64 3.8.13-1 [2870 kB] Fetched 2870 kB in 0s (14.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxdl1z775/libgnutls28-dev_3.8.13-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libpython3.14-stdlib loong64 3.14.5~rc1-1 [2249 kB] Fetched 2249 kB in 0s (66.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp4uyo6wi/libpython3.14-stdlib_3.14.5~rc1-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-h5py-serial loong64 3.16.0-2 [1421 kB] Fetched 1421 kB in 0s (39.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwrtb8tpf/python3-h5py-serial_3.16.0-2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libogg0 loong64 1.3.6-2+b1 [24.1 kB] Fetched 24.1 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6rr_y7tq/libogg0_1.3.6-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgnutls30t64 loong64 3.8.13-1 [1488 kB] Fetched 1488 kB in 0s (64.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmplcjymuge/libgnutls30t64_3.8.13-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libgudev-1.0-0 loong64 238-7+b2 [14.4 kB] Fetched 14.4 kB in 0s (1412 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmprcgrmeke/libgudev-1.0-0_238-7+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 gcc-16-base loong64 16-20260425-1 [35.8 kB] Fetched 35.8 kB in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcnq19ekb/gcc-16-base_16-20260425-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libasan8 loong64 16-20260425-1 [2838 kB] Fetched 2838 kB in 0s (74.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbtif232y/libasan8_16-20260425-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 dwz loong64 0.16-4 [108 kB] Fetched 108 kB in 0s (6444 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp9l00zbr5/dwz_0.16-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-flexparser all 0.4-2 [43.1 kB] Fetched 43.1 kB in 0s (3145 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptvj7fcyl/python3-flexparser_0.4-2_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libctf0 loong64 2.46-3 [98.3 kB] Fetched 98.3 kB in 0s (8611 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf_6zqsxi/libctf0_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-lz4 loong64 4.4.5+dfsg-1+b1 [26.5 kB] Fetched 26.5 kB in 0s (534 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpwrax1wqr/python3-lz4_4.4.5+dfsg-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 liblzf1 loong64 3.6-4+b4 [9908 B] Fetched 9908 B in 0s (943 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp11yzrhkx/liblzf1_3.6-4+b4_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 dbus-daemon loong64 1.16.2-4 [159 kB] Fetched 159 kB in 0s (14.1 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpsfkr4f2s/dbus-daemon_1.16.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-editables all 0.5-3 [14.9 kB] Fetched 14.9 kB in 0s (68.2 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpftnj7pew/python3-editables_0.5-3_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsasl2-modules-db loong64 2.1.28+dfsg1-11 [17.8 kB] Fetched 17.8 kB in 0s (306 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu9qf_ju9/libsasl2-modules-db_2.1.28+dfsg1-11_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 dbus-session-bus-common all 1.16.2-4 [53.1 kB] Fetched 53.1 kB in 0s (1144 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp5geoy9vl/dbus-session-bus-common_1.16.2-4_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libonig5 loong64 6.9.10-1+b1 [194 kB] Fetched 194 kB in 0s (15.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp42ndgdo1/libonig5_6.9.10-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxcb-sync1 loong64 1.17.0-2+b2 [108 kB] Fetched 108 kB in 0s (9578 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmphuo2he_q/libxcb-sync1_1.17.0-2+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3-pip all 26.0.1+dfsg-1 [1390 kB] Fetched 1390 kB in 0s (64.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpc49xyu6a/python3-pip_26.0.1+dfsg-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libpsl-dev loong64 0.21.5-1 [91.7 kB] Fetched 91.7 kB in 0s (6123 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpyc5qcgry/libpsl-dev_0.21.5-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libxau6 loong64 1:1.0.11-1+b2 [21.0 kB] Fetched 21.0 kB in 0s (2090 kB/s) dpkg-name: info: moved 'libxau6_1%3a1.0.11-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpcbxm9svg/libxau6_1.0.11-1+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libnghttp2-14 loong64 1.69.0-1 [90.2 kB] Fetched 90.2 kB in 0s (8144 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdaxc36nd/libnghttp2-14_1.69.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 build-essential loong64 12.12+b1 [4900 B] Fetched 4900 B in 0s (0 B/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpli3fpmjn/build-essential_12.12+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libelf1t64 loong64 0.195-1 [61.8 kB] Fetched 61.8 kB in 0s (5602 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpu95iswyz/libelf1t64_0.195-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libdebhelper-perl all 13.31 [75.7 kB] Fetched 75.7 kB in 0s (4793 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptxs6mqbx/libdebhelper-perl_13.31_all.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libmd4c0 loong64 0.5.2-2+b2 [49.1 kB] Fetched 49.1 kB in 0s (3253 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpinlj1fkp/libmd4c0_0.5.2-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-numpy1.90-dev loong64 1.90.0-6 [351 kB] Fetched 351 kB in 0s (21.0 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpb5gmaii_/libboost-numpy1.90-dev_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libqt5test5t64 loong64 5.15.17+dfsg-8 [139 kB] Fetched 139 kB in 0s (12.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp6ymosri9/libqt5test5t64_5.15.17+dfsg-8_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwebpdecoder3 loong64 1.5.0-0.1+b2 [183 kB] Fetched 183 kB in 0s (10.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgvf4kmut/libwebpdecoder3_1.5.0-0.1+b2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 binutils-loongarch64-linux-gnu loong64 2.46-3 [817 kB] Fetched 817 kB in 0s (48.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuueq7mxl/binutils-loongarch64-linux-gnu_2.46-3_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libattr1 loong64 1:2.5.2-4 [23.1 kB] Fetched 23.1 kB in 0s (0 B/s) dpkg-name: info: moved 'libattr1_1%3a2.5.2-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpxbsy6ztv/libattr1_2.5.2-4_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-serialization1.90-dev loong64 1.90.0-6 [986 kB] Fetched 986 kB in 0s (53.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpqq3uoy4x/libboost-serialization1.90-dev_1.90.0-6_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libxml2-16 loong64 2.15.2+dfsg-0.1 [647 kB] Fetched 647 kB in 0s (42.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxms5q2sz/libxml2-16_2.15.2+dfsg-0.1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 librdmacm1t64 loong64 63.0-1 [73.8 kB] Fetched 73.8 kB in 0s (1028 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp70plx2pk/librdmacm1t64_63.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-more-itertools all 10.8.0-1 [71.7 kB] Fetched 71.7 kB in 0s (432 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp4uk0fupc/python3-more-itertools_10.8.0-1_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libcups2t64 loong64 2.4.18-1 [250 kB] Fetched 250 kB in 0s (14.7 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpuyljadkw/libcups2t64_2.4.18-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pil.imagetk loong64 12.2.0-1 [83.8 kB] Fetched 83.8 kB in 0s (5417 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp7uv2nvrk/python3-pil.imagetk_12.2.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libboost-timer1.90.0 loong64 1.90.0-6 [226 kB] Fetched 226 kB in 0s (18.9 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmptave6cpf/libboost-timer1.90.0_1.90.0-6_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhdf5-hl-fortran-310 loong64 1.14.6+repack-2+b1 [36.8 kB] Fetched 36.8 kB in 0s (2478 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp3tjcc_1k/libhdf5-hl-fortran-310_1.14.6+repack-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsensors5 loong64 1:3.6.2-2+b2 [37.1 kB] Fetched 37.1 kB in 0s (3626 kB/s) dpkg-name: info: moved 'libsensors5_1%3a3.6.2-2+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmprw7xvye8/libsensors5_3.6.2-2+b2_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 patch loong64 2.8-2+b1 [133 kB] Fetched 133 kB in 0s (9012 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpeiciz_uh/patch_2.8-2+b1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libaec-dev loong64 1.1.6-1 [50.4 kB] Fetched 50.4 kB in 0s (4639 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpdu1i8d9u/libaec-dev_1.1.6-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libhdf5-fortran-310 loong64 1.14.6+repack-2+b1 [105 kB] Fetched 105 kB in 0s (6912 kB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpw5r8c9hy/libhdf5-fortran-310_1.14.6+repack-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-lxml loong64 6.1.0-1 [2085 kB] Fetched 2085 kB in 0s (77.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf05yyhb2/python3-lxml_6.1.0-1_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 libhwloc15 loong64 2.13.0-2 [156 kB] Fetched 156 kB in 0s (13.4 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpf4cch259/libhwloc15_2.13.0-2_loong64.deb' Get:1 http://snapshot.debian.org/archive/debian/20260506T205057Z unstable/main loong64 python3.13 loong64 3.13.12-1 [776 kB] Fetched 776 kB in 0s (47.6 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpp9s5jvsv/python3.13_3.13.12-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libwebp7 loong64 1.5.0-0.1+b2 [279 kB] Fetched 279 kB in 0s (22.5 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcqbfwpto/libwebp7_1.5.0-0.1+b2_loong64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-buildpackage: info: host architecture loong64 dpkg-source --before-build . dpkg-source: warning: email address 'Equivs Dummy Package Generator ' with single label domain debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: email address 'Equivs Dummy Package Generator ' with single label domain dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_loong64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_loong64.changes dpkg-genchanges: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-genchanges: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: warning: email address 'Equivs Dummy Package Generator ' with single label domain dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpxrm9wf7d/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture loong64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP 127.0.0.1 - - [15/Jun/2026 21:06:08] code 404, message File not found 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:35627 ./ InRelease 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:35627 ./ Release [462 B] 127.0.0.1 - - [15/Jun/2026 21:06:08] code 404, message File not found 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:35627 ./ Release.gpg 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:35627 ./ Packages [843 kB] Fetched 843 kB in 0s (21.8 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./gcc-16-base_16-20260425-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./libc-gconv-modules-extra_2.42-15_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./libc6_2.42-15_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./libgcc-s1_16-20260425-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./mawk_1.3.4.20260302-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./base-files_14%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./libtinfo6_6.6%2b20251231-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./debianutils_5.23.2%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./bash_5.3-3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./libacl1_2.3.2-3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:08] "GET /./libattr1_2.5.2-4_loong64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libbz2-1.0_1.0.8-6%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./liblzma5_5.8.3-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libmd0_1.1.0-2%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./tar_1.35%2bdfsg-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./dpkg_1.23.7_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./findutils_4.10.0-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./grep_3.12-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./gzip_1.13-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./hostname_3.25%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./ncurses-bin_6.6%2b20251231-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libcrypt1_4.5.1-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./perl-base_5.40.1-7%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./sed_4.9-3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libaudit-common_4.1.2-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libcap-ng0_0.9.3-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libaudit1_4.1.2-1%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libdb5.3t64_5.3.28%2bdfsg2-11%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./debconf_1.5.92_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libpam0g_1.7.0-5%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libpam-modules-bin_1.7.0-5%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libpam-modules_1.7.0-5%2bb2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libpam-runtime_1.7.0-5_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libblkid1_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libmount1_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libsmartcols1_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libudev1_260.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libuuid1_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./util-linux_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libdebconfclient0_0.282%2bb3_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./base-passwd_3.6.8%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./init-system-helpers_1.69_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./libc-bin_2.42-15_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./ncurses-base_6.6%2b20251231-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:06:09] "GET /./sysvinit-utils_3.18-1_loong64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP 127.0.0.1 - - [15/Jun/2026 21:06:13] code 404, message File not found 127.0.0.1 - - [15/Jun/2026 21:06:13] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:35627 ./ InRelease 127.0.0.1 - - [15/Jun/2026 21:06:13] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:35627 ./ Release 127.0.0.1 - - [15/Jun/2026 21:06:13] code 404, message File not found 127.0.0.1 - - [15/Jun/2026 21:06:13] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:35627 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [15/Jun/2026 21:07:04] "GET /./mount_2.42-6_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:07:04] "GET /./libsystemd-shared_260.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:07:04] "GET /./systemd_260.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:07:04] "GET /./systemd-sysv_260.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:07:04] "GET /./libdbus-1-3_1.16.2-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:07:04] "GET /./dbus-bin_1.16.2-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:07:04] "GET /./dbus-session-bus-common_1.16.2-4_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [15/Jun/2026 21:07:04] "GET /./libapparmor1_4.1.7-2_loong64.deb HTTP/1.1" 200 - 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Building dependency tree... Reading state information... libkadm5clnt-mit12 is already the newest version (1.22.1-2+b1). libkadm5clnt-mit12 set to manually installed. libboost-regex1.90-dev is already the newest version (1.90.0-6). libboost-regex1.90-dev set to manually installed. libpangocairo-1.0-0 is already the newest version (1.57.1-2). libpangocairo-1.0-0 set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-3+b2). libgtk-3-0t64 is already the newest version (3.24.52-1). libgtk-3-0t64 set to manually installed. gcc-15-loongarch64-linux-gnu is already the newest version (15.2.0-17). gcc-15-loongarch64-linux-gnu set to manually installed. procps is already the newest version (2:4.0.4-9+b2). procps set to manually installed. liblz4-dev is already the newest version (1.10.0-10). liblz4-dev set to manually installed. libudev1 is already the newest version (260.1-1). perl is already the newest version (5.40.1-7+b1). perl set to manually installed. libpopt0 is already the newest version (1.19+dfsg-2+b2). libpopt0 set to manually installed. python3-legacy-cgi is already the newest version (2.6.4-2). python3-legacy-cgi set to manually installed. libgl1 is already the newest version (1.7.0-3+b1). libgl1 set to manually installed. libpangoft2-1.0-0 is already the newest version (1.57.1-2). libpangoft2-1.0-0 set to manually installed. libtsan2 is already the newest version (16-20260425-1). libtsan2 set to manually installed. w3c-sgml-lib is already the newest version (1.3-3). w3c-sgml-lib set to manually installed. liblcms2-2 is already the newest version (2.19.1-1). liblcms2-2 set to manually installed. libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. libssl-dev is already the newest version (3.6.2-1). libssl-dev set to manually installed. libpsl5t64 is already the newest version (0.21.5-1). libpsl5t64 set to manually installed. python3-brotli is already the newest version (1.2.0-3). python3-brotli set to manually installed. python3-installer is already the newest version (1.0.0+dfsg1-1). python3-installer set to manually installed. python3-dateutil is already the newest version (2.9.0-4). python3-dateutil set to manually installed. python3-charset-normalizer is already the newest version (3.4.7-1). python3-charset-normalizer set to manually installed. python3.14-dev is already the newest version (3.14.5~rc1-1). python3.14-dev set to manually installed. libpcre2-16-0 is already the newest version (10.46-1+b2). libpcre2-16-0 set to manually installed. libcom-err2 is already the newest version (1.47.4-1). libcom-err2 set to manually installed. libxss1 is already the newest version (1:1.2.3-1+b4). libxss1 set to manually installed. python3-pyproject-hooks is already the newest version (1.2.0-1). python3-pyproject-hooks set to manually installed. libboost-numpy-dev is already the newest version (1.90.0.2). libboost-numpy-dev set to manually installed. libccp4-data is already the newest version (8.0.0-5). libccp4-data set to manually installed. dbus-system-bus-common is already the newest version (1.16.2-4). dbus-system-bus-common set to manually installed. python3-pymol is already the newest version (3.1.0+dfsg-1+b1). python3-pymol set to manually installed. libfftw3-bin is already the newest version (3.3.10-2+b2). libfftw3-bin set to manually installed. jq is already the newest version (1.8.1-5). jq set to manually installed. libgcrypt20 is already the newest version (1.12.2-1). libgcrypt20 set to manually installed. libproc2-0 is already the newest version (2:4.0.4-9+b2). libproc2-0 set to manually installed. python3-pkg-resources is already the newest version (78.1.1-0.1). python3-pkg-resources set to manually installed. libexpat1 is already the newest version (2.8.0-1). libexpat1 set to manually installed. libqt5sql5t64 is already the newest version (5.15.17+dfsg-8). libqt5sql5t64 set to manually installed. python3-hatchling is already the newest version (1.29.0-1). python3-hatchling set to manually installed. libmunge2 is already the newest version (0.5.18-1). libmunge2 set to manually installed. libcairo2 is already the newest version (1.18.4-3+b1). libcairo2 set to manually installed. liblapack3 is already the newest version (3.12.1-7+b2). liblapack3 set to manually installed. libcap-ng0 is already the newest version (0.9.3-1). librtmp-dev is already the newest version (2.6-1). librtmp-dev set to manually installed. g++ is already the newest version (4:15.2.0-5+b1). g++ set to manually installed. libavahi-common3 is already the newest version (0.8-18). libavahi-common3 set to manually installed. libzopfli1 is already the newest version (1.0.3-3+b1). libzopfli1 set to manually installed. libboost-dev is already the newest version (1.90.0.2). libboost-dev set to manually installed. libsharpyuv0 is already the newest version (1.5.0-0.1+b2). libsharpyuv0 set to manually installed. libidn2-dev is already the newest version (2.3.8-4+b2). libidn2-dev set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. libhdf5-310 is already the newest version (1.14.6+repack-2+b1). libhdf5-310 set to manually installed. libsqlite3-0 is already the newest version (3.46.1-9+b1). libsqlite3-0 set to manually installed. libdrm-common is already the newest version (2.4.131-1). libdrm-common set to manually installed. libthai0 is already the newest version (0.1.30-1+b1). libthai0 set to manually installed. libnetcdf22 is already the newest version (1:4.10.0-1). libnetcdf22 set to manually installed. libtasn1-6 is already the newest version (4.21.0-2+b1). libtasn1-6 set to manually installed. ocl-icd-libopencl1 is already the newest version (2.3.4-1+b1). ocl-icd-libopencl1 set to manually installed. python3-natsort is already the newest version (8.4.0-2). python3-natsort set to manually installed. python3-msgpack is already the newest version (1.1.2-2). python3-msgpack set to manually installed. libeigen3-dev is already the newest version (3.4.0-5). libeigen3-dev set to manually installed. libsdl3-0 is already the newest version (3.4.8+ds-1). libsdl3-0 set to manually installed. libldap2 is already the newest version (2.6.10+dfsg-1+b2). libldap2 set to manually installed. libx11-xcb1 is already the newest version (2:1.8.13-1). libx11-xcb1 set to manually installed. libinput-bin is already the newest version (1.31.1-1). libinput-bin set to manually installed. gzip is already the newest version (1.13-1+b1). libgdk-pixbuf-2.0-0 is already the newest version (2.44.6+dfsg-2). libgdk-pixbuf-2.0-0 set to manually installed. libpam-modules is already the newest version (1.7.0-5+b2). mesa-libgallium is already the newest version (26.0.6-1). mesa-libgallium set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.22.1-1). libngtcp2-crypto-gnutls8 set to manually installed. xml-core is already the newest version (0.20). xml-core set to manually installed. python3-wxgtk4.0 is already the newest version (4.2.4+dfsg-1+b1). python3-wxgtk4.0 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-11). libsasl2-2 set to manually installed. fonts-lato is already the newest version (2.015-1). fonts-lato set to manually installed. sfftw-dev is already the newest version (2.1.5-8). sfftw-dev set to manually installed. libopengl-dev is already the newest version (1.7.0-3+b1). libopengl-dev set to manually installed. python3-autocommand is already the newest version (2.2.2-4). python3-autocommand set to manually installed. sfftw2 is already the newest version (2.1.5-8). sfftw2 set to manually installed. libmagic1t64 is already the newest version (1:5.46-5+b2). libmagic1t64 set to manually installed. libann-cctbx-dev is already the newest version (1.1.2+doc-9+b1). libann-cctbx-dev set to manually installed. libabsl20260107 is already the newest version (20260107.0-5). libabsl20260107 set to manually installed. libitm1 is already the newest version (16-20260425-1). libitm1 set to manually installed. python3-pycbf is already the newest version (0.9.7+dfsg1-5.1+b1). python3-pycbf set to manually installed. python3.13-tk is already the newest version (3.13.12-1). python3.13-tk set to manually installed. python3-hdf5plugin is already the newest version (5.1.0-1). python3-hdf5plugin set to manually installed. fonts-dejavu-extra is already the newest version (2.37-9). fonts-dejavu-extra set to manually installed. sed is already the newest version (4.9-3). libdatrie1 is already the newest version (0.2.14-1+b1). libdatrie1 set to manually installed. dconf-gsettings-backend is already the newest version (0.49.0-4+b1). dconf-gsettings-backend set to manually installed. libcairo-gobject2 is already the newest version (1.18.4-3+b1). libcairo-gobject2 set to manually installed. libkadm5srv-mit12 is already the newest version (1.22.1-2+b1). libkadm5srv-mit12 set to manually installed. libsystemd-shared is already the newest version (260.1-1). libsystemd-shared set to manually installed. python3.14-tk is already the newest version (3.14.5~rc1-1). python3.14-tk set to manually installed. file is already the newest version (1:5.46-5+b2). file set to manually installed. libgtk-3-common is already the newest version (3.24.52-1). libgtk-3-common set to manually installed. libpython3-dev is already the newest version (3.13.9-3+b1). libpython3-dev set to manually installed. libsvtav1enc4 is already the newest version (4.1.0+dfsg-1). libsvtav1enc4 set to manually installed. bubblewrap is already the newest version (0.11.2-1). bubblewrap set to manually installed. libde265-0 is already the newest version (1.0.18-1). libde265-0 set to manually installed. libasound2t64 is already the newest version (1.2.15.3-1+b1). libasound2t64 set to manually installed. libwebp-dev is already the newest version (1.5.0-0.1+b2). libwebp-dev set to manually installed. python3-all-dev is already the newest version (3.13.9-3+b1). python3-all-dev set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-5+b2). libboost-test1.90-dev is already the newest version (1.90.0-6). libboost-test1.90-dev set to manually installed. ibverbs-providers is already the newest version (63.0-1). ibverbs-providers set to manually installed. rpcsvc-proto is already the newest version (1.4.3-1+b1). rpcsvc-proto set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.0-1). dh-strip-nondeterminism set to manually installed. python3-setuptools is already the newest version (78.1.1-0.1). python3-setuptools set to manually installed. libkrb5support0 is already the newest version (1.22.1-2+b1). libkrb5support0 set to manually installed. libngtcp2-dev is already the newest version (1.22.1-1). libngtcp2-dev set to manually installed. libgnutls-dane0t64 is already the newest version (3.8.13-1). libgnutls-dane0t64 set to manually installed. libperl5.40 is already the newest version (5.40.1-7+b1). libperl5.40 set to manually installed. pybuild-plugin-pyproject is already the newest version (7.20260309). pybuild-plugin-pyproject set to manually installed. python3-procrunner is already the newest version (2.3.3-2). python3-procrunner set to manually installed. libevdev2 is already the newest version (1.13.6+dfsg-2). libevdev2 set to manually installed. libxcb-keysyms1 is already the newest version (0.4.1-1+b2). libxcb-keysyms1 set to manually installed. coreutils is already the newest version (9.10-1). libgmp-dev is already the newest version (2:6.3.0+dfsg-5+b2). libgmp-dev set to manually installed. libvorbisenc2 is already the newest version (1.3.7-3+b2). libvorbisenc2 set to manually installed. libjs-sphinxdoc is already the newest version (9.1.0-2). libjs-sphinxdoc set to manually installed. libopenjp2-7 is already the newest version (2.5.4-1.1). libopenjp2-7 set to manually installed. libgdk-pixbuf2.0-common is already the newest version (2.44.6+dfsg-2). libgdk-pixbuf2.0-common set to manually installed. libwacom9 is already the newest version (2.18.0-1). libwacom9 set to manually installed. libssm2 is already the newest version (1.4.0-2+b4). libssm2 set to manually installed. g++-15 is already the newest version (15.2.0-17). g++-15 set to manually installed. autoconf is already the newest version (2.72-6). autoconf set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. libdeflate-dev is already the newest version (1.23-2+b2). libdeflate-dev set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. libqt5core5t64 is already the newest version (5.15.17+dfsg-8). libqt5core5t64 set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. libffi8 is already the newest version (3.5.2-4). libffi8 set to manually installed. libopenmpi40 is already the newest version (5.0.10-1). libopenmpi40 set to manually installed. libwebpmux3 is already the newest version (1.5.0-0.1+b2). libwebpmux3 set to manually installed. fonts-dejavu-core is already the newest version (2.37-9). fonts-dejavu-core set to manually installed. python3-numpy is already the newest version (1:2.4.4+ds-2). python3-numpy set to manually installed. libqt5xml5t64 is already the newest version (5.15.17+dfsg-8). libqt5xml5t64 set to manually installed. libxcb-xkb1 is already the newest version (1.17.0-2+b2). libxcb-xkb1 set to manually installed. nettle-dev is already the newest version (3.10.2-1+b1). nettle-dev set to manually installed. libglib2.0-0t64 is already the newest version (2.88.1-2). libglib2.0-0t64 set to manually installed. libc-gconv-modules-extra is already the newest version (2.42-15). python3-platformdirs is already the newest version (4.9.6-1). python3-platformdirs set to manually installed. python3-pyqt5.qtopengl is already the newest version (5.15.11+dfsg-4). python3-pyqt5.qtopengl set to manually installed. libpixman-1-0 is already the newest version (0.46.4-1+b2). libpixman-1-0 set to manually installed. libicu78 is already the newest version (78.3-1). libicu78 set to manually installed. libdebconfclient0 is already the newest version (0.282+b3). libdrm2 is already the newest version (2.4.131-1+b1). libdrm2 set to manually installed. libdeflate0 is already the newest version (1.23-2+b2). libdeflate0 set to manually installed. libkdb5-10t64 is already the newest version (1.22.1-2+b1). libkdb5-10t64 set to manually installed. libaec0 is already the newest version (1.1.6-1). libaec0 set to manually installed. debconf is already the newest version (1.5.92). libxrender1 is already the newest version (1:0.9.12-1+b2). libxrender1 set to manually installed. krb5-multidev is already the newest version (1.22.1-2+b1). krb5-multidev set to manually installed. libidn2-0 is already the newest version (2.3.8-4+b2). libidn2-0 set to manually installed. cpp is already the newest version (4:15.2.0-5+b1). cpp set to manually installed. libjbig0 is already the newest version (2.1-6.1+b3). libjbig0 set to manually installed. libccp4-dev is already the newest version (8.0.0-5+b1). libccp4-dev set to manually installed. libxcb1-dev is already the newest version (1.17.0-2+b2). libxcb1-dev set to manually installed. libexpat1-dev is already the newest version (2.8.0-1). libexpat1-dev set to manually installed. xfonts-encodings is already the newest version (1:1.0.4-2.2). xfonts-encodings set to manually installed. libasyncns0 is already the newest version (0.8-7+b2). libasyncns0 set to manually installed. architecture-properties is already the newest version (0.2.6+b2). architecture-properties set to manually installed. libglew2.3 is already the newest version (2.3.1-6). libglew2.3 set to manually installed. python3.14 is already the newest version (3.14.5~rc1-1). python3.14 set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. python3 is already the newest version (3.13.9-3+b1). python3 set to manually installed. libjs-jquery is already the newest version (3.7.1+dfsg+~3.5.33-1). libjs-jquery set to manually installed. libgraphite2-3 is already the newest version (1.3.14-13). libgraphite2-3 set to manually installed. dbus-bin is already the newest version (1.16.2-4). dbus-bin set to manually installed. python3-freetype is already the newest version (2.5.1-2). python3-freetype set to manually installed. fontconfig is already the newest version (2.17.1-5). fontconfig set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-3). libisl23 is already the newest version (0.27-2). libisl23 set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. libxcb-xinput0 is already the newest version (1.17.0-2+b2). libxcb-xinput0 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. python3-h5py is already the newest version (3.16.0-2). python3-h5py set to manually installed. libx11-6 is already the newest version (2:1.8.13-1). libx11-6 set to manually installed. libbrotli-dev is already the newest version (1.2.0-3). libbrotli-dev set to manually installed. libpython3.13-dev is already the newest version (3.13.12-1). libpython3.13-dev set to manually installed. dconf-service is already the newest version (0.49.0-4+b1). dconf-service set to manually installed. libboost-container1.90.0 is already the newest version (1.90.0-6). libboost-container1.90.0 set to manually installed. libtiffxx6 is already the newest version (4.7.1-2). libtiffxx6 set to manually installed. base-files is already the newest version (14+b1). libsystemd0 is already the newest version (260.1-1). libxcb1 is already the newest version (1.17.0-2+b2). libxcb1 set to manually installed. libpython3.14 is already the newest version (3.14.5~rc1-1). libpython3.14 set to manually installed. libucx0 is already the newest version (1.20.1~rc2-1). libucx0 set to manually installed. python3-packaging is already the newest version (26.0-1). python3-packaging set to manually installed. libboost-date-time1.90.0 is already the newest version (1.90.0-6). libboost-date-time1.90.0 set to manually installed. libpciaccess0 is already the newest version (0.17-3+b4). libpciaccess0 set to manually installed. python3-typeguard is already the newest version (4.4.4-2). python3-typeguard set to manually installed. libselinux1 is already the newest version (3.10-1). libxext6 is already the newest version (2:1.3.4-1+b4). libxext6 set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. dpkg is already the newest version (1.23.7). libseccomp2 is already the newest version (2.6.0-2+b1). libseccomp2 set to manually installed. libcurl3t64-gnutls is already the newest version (8.20.0-1). libcurl3t64-gnutls set to manually installed. libxcb-icccm4 is already the newest version (0.4.2-1+b2). libxcb-icccm4 set to manually installed. xkb-data is already the newest version (2.47-1). xkb-data set to manually installed. libdav1d7 is already the newest version (1.5.3-1+b2). libdav1d7 set to manually installed. libsm6 is already the newest version (2:1.2.6-1+b2). libsm6 set to manually installed. comerr-dev is already the newest version (2.1-1.47.4-1). comerr-dev set to manually installed. shared-mime-info is already the newest version (2.4-5+b2). shared-mime-info set to manually installed. libboost-regex1.90.0 is already the newest version (1.90.0-6). libboost-regex1.90.0 set to manually installed. libxshmfence1 is already the newest version (1.3.3-1+b2). libxshmfence1 set to manually installed. python3-pyqt5 is already the newest version (5.15.11+dfsg-4). python3-pyqt5 set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b2). libxcomposite1 is already the newest version (1:0.4.6-1+b2). libxcomposite1 set to manually installed. libkrb5-dev is already the newest version (1.22.1-2+b1). libkrb5-dev set to manually installed. libxcb-render-util0 is already the newest version (0.3.10-1+b2). libxcb-render-util0 set to manually installed. python3-mrcfile is already the newest version (1.5.4-3). python3-mrcfile set to manually installed. libc6 is already the newest version (2.42-15). libglx0 is already the newest version (1.7.0-3+b1). libglx0 set to manually installed. librsvg2-2 is already the newest version (2.62.1+dfsg-1). librsvg2-2 set to manually installed. libgssapi-krb5-2 is already the newest version (1.22.1-2+b1). libgssapi-krb5-2 set to manually installed. libjansson4 is already the newest version (2.14-2+b4). libjansson4 set to manually installed. gettext-base is already the newest version (0.23.2-2). gettext-base set to manually installed. libglvnd0 is already the newest version (1.7.0-3+b1). libglvnd0 set to manually installed. libxcb-randr0 is already the newest version (1.17.0-2+b2). libxcb-randr0 set to manually installed. hicolor-icon-theme is already the newest version (0.18-2). hicolor-icon-theme set to manually installed. ncurses-bin is already the newest version (6.6+20251231-1+b1). bsdextrautils is already the newest version (2.42-6). bsdextrautils set to manually installed. python3-pytest is already the newest version (9.0.3-1). python3-pytest set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-3). zlib1g-dev set to manually installed. libhdf5-hl-310 is already the newest version (1.14.6+repack-2+b1). libhdf5-hl-310 set to manually installed. libacl1 is already the newest version (2.3.2-3). python3-ordered-set is already the newest version (4.1.0-1). python3-ordered-set set to manually installed. libpam-runtime is already the newest version (1.7.0-5). libngtcp2-crypto-ossl0 is already the newest version (1.22.1-1). libngtcp2-crypto-ossl0 set to manually installed. libldap-dev is already the newest version (2.6.10+dfsg-1+b2). libldap-dev set to manually installed. libboost-chrono1.90-dev is already the newest version (1.90.0-6). libboost-chrono1.90-dev set to manually installed. libbsd0 is already the newest version (0.12.2-2+b2). libbsd0 set to manually installed. libcurl4t64 is already the newest version (8.20.0-1). libcurl4t64 set to manually installed. libpulse0 is already the newest version (17.0+dfsg1-2.1+b1). libpulse0 set to manually installed. autopoint is already the newest version (0.23.2-2). autopoint set to manually installed. libpython3-stdlib is already the newest version (3.13.9-3+b1). libpython3-stdlib set to manually installed. diffutils is already the newest version (1:3.12-1+b1). libwayland-cursor0 is already the newest version (1.24.0-2+b2). libwayland-cursor0 set to manually installed. python3-jaraco.text is already the newest version (4.0.0-1). python3-jaraco.text set to manually installed. libpython3.13 is already the newest version (3.13.12-1). libpython3.13 set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.0-1). libfile-stripnondeterminism-perl set to manually installed. libssh2-1t64 is already the newest version (1.11.1-2). libssh2-1t64 set to manually installed. python3-wheel is already the newest version (0.47.0-1). python3-wheel set to manually installed. fftw-dev is already the newest version (2.1.5-8). fftw-dev set to manually installed. dbus-user-session is already the newest version (1.16.2-4). dbus-user-session set to manually installed. libpng16-16t64 is already the newest version (1.6.58-1). libpng16-16t64 set to manually installed. libxxhash-dev is already the newest version (0.8.3-2+b2). libxxhash-dev set to manually installed. libxfixes3 is already the newest version (1:6.0.0-2+b5). libxfixes3 set to manually installed. libgles2 is already the newest version (1.7.0-3+b1). libgles2 set to manually installed. binutils is already the newest version (2.46-3). binutils set to manually installed. libavif16 is already the newest version (1.4.1-1+b1). libavif16 set to manually installed. libboost1.90-dev is already the newest version (1.90.0-6). libboost1.90-dev set to manually installed. libxcb-image0 is already the newest version (0.4.0-2+b3). libxcb-image0 set to manually installed. libepoxy0 is already the newest version (1.5.10-2+b2). libepoxy0 set to manually installed. python3-scipy is already the newest version (1.16.3-4+b1). python3-scipy set to manually installed. libblkid1 is already the newest version (2.42-6). po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libgssrpc4t64 is already the newest version (1.22.1-2+b1). libgssrpc4t64 set to manually installed. python3-idna is already the newest version (3.11-1). python3-idna set to manually installed. fftw2 is already the newest version (2.1.5-8). fftw2 set to manually installed. unicode-data is already the newest version (17.0.0-2). unicode-data set to manually installed. libmagic-mgc is already the newest version (1:5.46-5+b2). libmagic-mgc set to manually installed. python3-minimal is already the newest version (3.13.9-3+b1). python3-minimal set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. python3-inflect is already the newest version (7.5.0-1). python3-inflect set to manually installed. libqt5designer5 is already the newest version (5.15.17-4+b1). libqt5designer5 set to manually installed. libtinfo6 is already the newest version (6.6+20251231-1+b1). libann-cctbx0 is already the newest version (1.1.2+doc-9+b1). libann-cctbx0 set to manually installed. libpcre2-32-0 is already the newest version (10.46-1+b2). libpcre2-32-0 set to manually installed. gettext is already the newest version (0.23.2-2). gettext set to manually installed. scons is already the newest version (4.10.1+dfsg-2). scons set to manually installed. libtasn1-6-dev is already the newest version (4.21.0-2+b1). libtasn1-6-dev set to manually installed. fonts-lyx is already the newest version (2.5.1-1). fonts-lyx set to manually installed. libpkgconf7 is already the newest version (2.5.1-4). libpkgconf7 set to manually installed. automake is already the newest version (1:1.18.1-4). automake set to manually installed. libxxf86vm1 is already the newest version (1:1.1.4-2+b1). libxxf86vm1 set to manually installed. make is already the newest version (4.4.1-3+b1). make set to manually installed. cpp-15-loongarch64-linux-gnu is already the newest version (15.2.0-17). cpp-15-loongarch64-linux-gnu set to manually installed. libantlr3c-3.4-0 is already the newest version (3.4+dfsg-4+b3). libantlr3c-3.4-0 set to manually installed. libgcc-15-dev is already the newest version (15.2.0-17). libgcc-15-dev set to manually installed. python3-urllib3 is already the newest version (2.6.3-2). python3-urllib3 set to manually installed. libkeyutils1 is already the newest version (1.6.3-6+b2). libkeyutils1 set to manually installed. pkgconf is already the newest version (2.5.1-4). pkgconf set to manually installed. librtmp1 is already the newest version (2.6-1). librtmp1 set to manually installed. gtk-update-icon-cache is already the newest version (4.22.3+ds-1). gtk-update-icon-cache set to manually installed. libqt5gui5t64 is already the newest version (5.15.17+dfsg-8). libqt5gui5t64 set to manually installed. libgmpxx4ldbl is already the newest version (2:6.3.0+dfsg-5+b2). libgmpxx4ldbl set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. libpmix2t64 is already the newest version (6.0.0+really5.0.9-3+b1). libpmix2t64 set to manually installed. python3-jaraco.context is already the newest version (6.0.1-2). python3-jaraco.context set to manually installed. systemd is already the newest version (260.1-1). systemd set to manually installed. libkrb5-3 is already the newest version (1.22.1-2+b1). libkrb5-3 set to manually installed. liblerc-dev is already the newest version (4.1.0+ds-1). liblerc-dev set to manually installed. libwayland-client0 is already the newest version (1.24.0-2+b2). libwayland-client0 set to manually installed. libfftw3-long3 is already the newest version (3.3.10-2+b2). libfftw3-long3 set to manually installed. libxcb-dri3-0 is already the newest version (1.17.0-2+b2). libxcb-dri3-0 set to manually installed. libc-bin is already the newest version (2.42-15). libfuse3-4 is already the newest version (3.18.2-2). libfuse3-4 set to manually installed. dh-autoreconf is already the newest version (22). dh-autoreconf set to manually installed. dbus is already the newest version (1.16.2-4). dbus set to manually installed. libimagequant0 is already the newest version (4.4.1-1+b2). libimagequant0 set to manually installed. libmount1 is already the newest version (2.42-6). libclipper2 is already the newest version (2.1.20201109-2+b4). libclipper2 set to manually installed. gcc-loongarch64-linux-gnu is already the newest version (4:15.2.0-5+b1). gcc-loongarch64-linux-gnu set to manually installed. python3-dev is already the newest version (3.13.9-3+b1). python3-dev set to manually installed. libedit2 is already the newest version (3.1-20251016-1+b1). libedit2 set to manually installed. libboost-atomic1.90-dev is already the newest version (1.90.0-6). libboost-atomic1.90-dev set to manually installed. python3.13-minimal is already the newest version (3.13.12-1). python3.13-minimal set to manually installed. libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). python3-contourpy is already the newest version (1.3.3-1+b1). python3-contourpy set to manually installed. python3-rlpycairo is already the newest version (0.3.0-4). python3-rlpycairo set to manually installed. xz-utils is already the newest version (5.8.3-1). xz-utils set to manually installed. libboost-numpy1.90.0 is already the newest version (1.90.0-6). libboost-numpy1.90.0 set to manually installed. python3.13-dev is already the newest version (3.13.12-1). python3.13-dev set to manually installed. x11-common is already the newest version (1:7.7+26). x11-common set to manually installed. python3-build is already the newest version (1.4.0-1). python3-build set to manually installed. libheif1 is already the newest version (1.21.2-4). libheif1 set to manually installed. libctf-nobfd0 is already the newest version (2.46-3). libctf-nobfd0 set to manually installed. libnotify4 is already the newest version (0.8.8-1+b1). libnotify4 set to manually installed. tzdata is already the newest version (2026b-1). tzdata set to manually installed. libpython3-all-dev is already the newest version (3.13.9-3+b1). libpython3-all-dev set to manually installed. g++-loongarch64-linux-gnu is already the newest version (4:15.2.0-5+b1). g++-loongarch64-linux-gnu set to manually installed. libjq1 is already the newest version (1.8.1-5). libjq1 set to manually installed. libatomic1 is already the newest version (16-20260425-1). libatomic1 set to manually installed. fonts-dejavu-mono is already the newest version (2.37-9). fonts-dejavu-mono set to manually installed. libfontenc1 is already the newest version (1:1.1.8-1+b3). libfontenc1 set to manually installed. libraqm0 is already the newest version (0.10.5-1). libraqm0 set to manually installed. python3-all is already the newest version (3.13.9-3+b1). python3-all set to manually installed. xtrans-dev is already the newest version (1.6.0-1). xtrans-dev set to manually installed. man-db is already the newest version (2.13.1-1+b1). man-db set to manually installed. libxcb-present0 is already the newest version (1.17.0-2+b2). libxcb-present0 set to manually installed. libxft2 is already the newest version (2.3.6-1+b5). libxft2 set to manually installed. python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. libxcb-xinerama0 is already the newest version (1.17.0-2+b2). libxcb-xinerama0 set to manually installed. pybind11-dev is already the newest version (3.0.1-3). pybind11-dev set to manually installed. libavahi-common-data is already the newest version (0.8-18). libavahi-common-data set to manually installed. libbrotli1 is already the newest version (1.2.0-3). libbrotli1 set to manually installed. libp11-kit-dev is already the newest version (0.26.2-2). libp11-kit-dev set to manually installed. libdbus-1-3 is already the newest version (1.16.2-4). libdbus-1-3 set to manually installed. libjbig-dev is already the newest version (2.1-6.1+b3). libjbig-dev set to manually installed. libqt5widgets5t64 is already the newest version (5.15.17+dfsg-8). libqt5widgets5t64 set to manually installed. libz3-4 is already the newest version (4.13.3-1+b2). libz3-4 set to manually installed. dh-python is already the newest version (7.20260309). dh-python set to manually installed. libhwloc-plugins is already the newest version (2.13.0-2). libhwloc-plugins set to manually installed. libxau-dev is already the newest version (1:1.0.11-1+b2). libxau-dev set to manually installed. libboost-exception1.90-dev is already the newest version (1.90.0-6). libboost-exception1.90-dev set to manually installed. libegl1 is already the newest version (1.7.0-3+b1). libegl1 set to manually installed. python3-cairo is already the newest version (1.27.0-2+b1). python3-cairo set to manually installed. libxkbcommon0 is already the newest version (1.13.1-1). libxkbcommon0 set to manually installed. python3-typing-extensions is already the newest version (4.15.0-2). python3-typing-extensions set to manually installed. libqt5opengl5t64 is already the newest version (5.15.17+dfsg-8). libqt5opengl5t64 set to manually installed. perl-modules-5.40 is already the newest version (5.40.1-7). perl-modules-5.40 set to manually installed. libboost-thread1.90-dev is already the newest version (1.90.0-6). libboost-thread1.90-dev set to manually installed. libfribidi0 is already the newest version (1.0.16-5+b1). libfribidi0 set to manually installed. libmtdev1t64 is already the newest version (1.1.7-1+b2). libmtdev1t64 set to manually installed. libjpeg-dev is already the newest version (1:3.1.3-4). libjpeg-dev set to manually installed. libssm-dev is already the newest version (1.4.0-2+b4). libssm-dev set to manually installed. libgbm1 is already the newest version (26.0.6-1). libgbm1 set to manually installed. libsharpyuv-dev is already the newest version (1.5.0-0.1+b2). libsharpyuv-dev set to manually installed. libfftw3-double3 is already the newest version (3.3.10-2+b2). libfftw3-double3 set to manually installed. netbase is already the newest version (6.5). netbase set to manually installed. sphinx-rtd-theme-common is already the newest version (3.1.0+dfsg-1). sphinx-rtd-theme-common set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. libjxl0.11 is already the newest version (0.11.2-1). libjxl0.11 set to manually installed. libdpkg-perl is already the newest version (1.23.7). libdpkg-perl set to manually installed. libvorbis0a is already the newest version (1.3.7-3+b2). libvorbis0a set to manually installed. libmp3lame0 is already the newest version (3.101~svn6531+dfsg-1). libmp3lame0 set to manually installed. libevent-pthreads-2.1-7t64 is already the newest version (2.1.12-stable-10+b2). libevent-pthreads-2.1-7t64 set to manually installed. libfftw3-single3 is already the newest version (3.3.10-2+b2). libfftw3-single3 set to manually installed. libqt5printsupport5t64 is already the newest version (5.15.17+dfsg-8). libqt5printsupport5t64 set to manually installed. libqt5help5 is already the newest version (5.15.17-4+b1). libqt5help5 set to manually installed. hdf5-helpers is already the newest version (1.14.6+repack-2+b1). hdf5-helpers set to manually installed. libegl-mesa0 is already the newest version (26.0.6-1). libegl-mesa0 set to manually installed. pkgconf-bin is already the newest version (2.5.1-4). pkgconf-bin set to manually installed. libxcb-glx0 is already the newest version (1.17.0-2+b2). libxcb-glx0 set to manually installed. libblas3 is already the newest version (3.12.1-7+b2). libblas3 set to manually installed. python3-pathspec is already the newest version (1.0.4-1). python3-pathspec set to manually installed. libzstd-dev is already the newest version (1.5.7+dfsg-3+b2). libzstd-dev set to manually installed. libnghttp2-dev is already the newest version (1.69.0-1). libnghttp2-dev set to manually installed. libopengl0 is already the newest version (1.7.0-3+b1). libopengl0 set to manually installed. libnghttp3-9 is already the newest version (1.15.0-1). libnghttp3-9 set to manually installed. libhogweed6t64 is already the newest version (3.10.2-1+b1). libhogweed6t64 set to manually installed. python3-tqdm is already the newest version (4.67.3-1). python3-tqdm set to manually installed. gcc is already the newest version (4:15.2.0-5+b1). gcc set to manually installed. libsensors-config is already the newest version (1:3.6.2-2). libsensors-config set to manually installed. liblz4-1 is already the newest version (1.10.0-10). liblz4-1 set to manually installed. libcap2 is already the newest version (1:2.78-1). libcap2 set to manually installed. libllvm21 is already the newest version (1:21.1.8-7+b1). libllvm21 set to manually installed. libevent-2.1-7t64 is already the newest version (2.1.12-stable-10+b2). libevent-2.1-7t64 set to manually installed. python3-trove-classifiers is already the newest version (2026.1.14.14-1). python3-trove-classifiers set to manually installed. libcc1-0 is already the newest version (16-20260425-1). libcc1-0 set to manually installed. libdecor-0-0 is already the newest version (0.2.5-1+b1). libdecor-0-0 set to manually installed. libqt5network5t64 is already the newest version (5.15.17+dfsg-8). libqt5network5t64 set to manually installed. mount is already the newest version (2.42-6). mount set to manually installed. libatspi2.0-0t64 is already the newest version (2.60.3-1). libatspi2.0-0t64 set to manually installed. libatk1.0-0t64 is already the newest version (2.60.3-1). libatk1.0-0t64 set to manually installed. libtcl8.6 is already the newest version (8.6.17+dfsg-1+b2). libtcl8.6 set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-2+b1). libxdmcp6 set to manually installed. libxdmcp-dev is already the newest version (1:1.1.5-2+b1). libxdmcp-dev set to manually installed. ca-certificates is already the newest version (20260223). ca-certificates set to manually installed. libgpg-error0 is already the newest version (1.59-4). libgpg-error0 set to manually installed. bash is already the newest version (5.3-3). libglycin-2-0 is already the newest version (2.0.8-1). libglycin-2-0 set to manually installed. python3-opengl is already the newest version (3.1.10+dfsg-1). python3-opengl set to manually installed. libubsan1 is already the newest version (16-20260425-1). libubsan1 set to manually installed. libboost-graph1.90.0 is already the newest version (1.90.0-6). libboost-graph1.90.0 set to manually installed. libxinerama1 is already the newest version (2:1.1.4-3+b5). libxinerama1 set to manually installed. libsz2 is already the newest version (1.1.6-1). libsz2 set to manually installed. gcc-15 is already the newest version (15.2.0-17). gcc-15 set to manually installed. libboost-graph1.90-dev is already the newest version (1.90.0-6). libboost-graph1.90-dev set to manually installed. libxcb-xfixes0 is already the newest version (1.17.0-2+b2). libxcb-xfixes0 set to manually installed. libgcc-s1 is already the newest version (16-20260425-1). python3-mpmath is already the newest version (1.4.1-2). python3-mpmath set to manually installed. rsync is already the newest version (3.4.2+ds1-2). rsync set to manually installed. libharfbuzz0b is already the newest version (12.3.2-2+b2). libharfbuzz0b set to manually installed. dh-exec is already the newest version (0.31+b2). dh-exec set to manually installed. libevent-core-2.1-7t64 is already the newest version (2.1.12-stable-10+b2). libevent-core-2.1-7t64 set to manually installed. libunbound8 is already the newest version (1.25.0-1). libunbound8 set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. libtool is already the newest version (2.5.4-11). libtool set to manually installed. libatk-bridge2.0-0t64 is already the newest version (2.60.3-1). libatk-bridge2.0-0t64 set to manually installed. libxnvctrl0 is already the newest version (535.171.04-1+b3). libxnvctrl0 set to manually installed. fontconfig-config is already the newest version (2.17.1-5). fontconfig-config set to manually installed. tar is already the newest version (1.35+dfsg-4). libxres1 is already the newest version (2:1.2.1-2). libxres1 set to manually installed. libdouble-conversion3 is already the newest version (3.4.0-1+b1). libdouble-conversion3 set to manually installed. openssl-provider-legacy is already the newest version (3.6.2-1). libxcursor1 is already the newest version (1:1.2.3-1+b2). libxcursor1 set to manually installed. libpam-systemd is already the newest version (260.1-1). libpam-systemd set to manually installed. libhdf5-dev is already the newest version (1.14.6+repack-2+b1). libhdf5-dev set to manually installed. liblsan0 is already the newest version (16-20260425-1). liblsan0 set to manually installed. libgomp1 is already the newest version (16-20260425-1). libgomp1 set to manually installed. mawk is already the newest version (1.3.4.20260302-1). libtk8.6 is already the newest version (8.6.17-1+b2). libtk8.6 set to manually installed. libpcre2-8-0 is already the newest version (10.46-1+b2). libqt5dbus5t64 is already the newest version (5.15.17+dfsg-8). libqt5dbus5t64 set to manually installed. libgav1-2 is already the newest version (0.20.0-2+b1). libgav1-2 set to manually installed. libccp4c0t64 is already the newest version (8.0.0-5+b1). libccp4c0t64 set to manually installed. dash is already the newest version (0.5.12-12+b1). libheif-plugin-dav1d is already the newest version (1.21.2-4). libheif-plugin-dav1d set to manually installed. libbinutils is already the newest version (2.46-3). libbinutils set to manually installed. gcc-15-base is already the newest version (15.2.0-17). gcc-15-base set to manually installed. libpython3.14-minimal is already the newest version (3.14.5~rc1-1). libpython3.14-minimal set to manually installed. libantlr3c-dev is already the newest version (3.4+dfsg-4+b3). libantlr3c-dev set to manually installed. libxi6 is already the newest version (2:1.8.2-2+b1). libxi6 set to manually installed. libglx-mesa0 is already the newest version (26.0.6-1). libglx-mesa0 set to manually installed. python3-six is already the newest version (1.17.0-2). python3-six set to manually installed. cpp-loongarch64-linux-gnu is already the newest version (4:15.2.0-5+b1). cpp-loongarch64-linux-gnu set to manually installed. base-passwd is already the newest version (3.6.8+b1). libxkbcommon-x11-0 is already the newest version (1.13.1-1). libxkbcommon-x11-0 set to manually installed. libthai-data is already the newest version (0.1.30-1). libthai-data set to manually installed. libglu1-mesa is already the newest version (9.0.2-1.1+b4). libglu1-mesa set to manually installed. g++-15-loongarch64-linux-gnu is already the newest version (15.2.0-17). g++-15-loongarch64-linux-gnu set to manually installed. libwxgtk3.2-1t64 is already the newest version (3.2.9+dfsg-1+b1). libwxgtk3.2-1t64 set to manually installed. python3-requests is already the newest version (2.32.5+dfsg-1). python3-requests set to manually installed. liblerc4 is already the newest version (4.1.0+ds-1). liblerc4 set to manually installed. libcloudproviders0 is already the newest version (0.4.0-2+b1). libcloudproviders0 set to manually installed. libboost-python1.90-dev is already the newest version (1.90.0-6). libboost-python1.90-dev set to manually installed. libboost-thread1.90.0 is already the newest version (1.90.0-6). libboost-thread1.90.0 set to manually installed. libfreetype6 is already the newest version (2.14.3+dfsg-1). libfreetype6 set to manually installed. libstdc++-15-dev is already the newest version (15.2.0-17). libstdc++-15-dev set to manually installed. sysvinit-utils is already the newest version (3.18-1). libtiff6 is already the newest version (4.7.1-2). libtiff6 set to manually installed. sgml-base is already the newest version (1.31+nmu1). sgml-base set to manually installed. libqhull-r8.0 is already the newest version (2020.2-9). libqhull-r8.0 set to manually installed. libglx-dev is already the newest version (1.7.0-3+b1). libglx-dev set to manually installed. libpam0g is already the newest version (1.7.0-5+b2). libclipper-dev is already the newest version (2.1.20201109-2+b4). libclipper-dev set to manually installed. libgfortran5 is already the newest version (16-20260425-1). libgfortran5 set to manually installed. fonts-font-awesome is already the newest version (5.0.10+really4.7.0~dfsg-4.1). fonts-font-awesome set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). python3-fonttools is already the newest version (4.62.1-7). python3-fonttools set to manually installed. libsdl2-2.0-0 is already the newest version (2.32.68+ds-1). libsdl2-2.0-0 set to manually installed. libibverbs1 is already the newest version (63.0-1). libibverbs1 set to manually installed. libcbf1t64 is already the newest version (0.9.7+dfsg1-5.1+b1). libcbf1t64 set to manually installed. grep is already the newest version (3.12-1+b1). libfftw3-dev is already the newest version (3.3.10-2+b2). libfftw3-dev set to manually installed. libk5crypto3 is already the newest version (1.22.1-2+b1). libk5crypto3 set to manually installed. libc-dev-bin is already the newest version (2.42-15). libc-dev-bin set to manually installed. libboost-timer1.90-dev is already the newest version (1.90.0-6). libboost-timer1.90-dev set to manually installed. libxdamage1 is already the newest version (1:1.1.7-1+b1). libxdamage1 set to manually installed. libpython3.13-minimal is already the newest version (3.13.12-1). libpython3.13-minimal set to manually installed. python3-numpy-dev is already the newest version (1:2.4.4+ds-2). python3-numpy-dev set to manually installed. dpkg-dev is already the newest version (1.23.7). dpkg-dev set to manually installed. libdrm-amdgpu1 is already the newest version (2.4.131-1+b1). libdrm-amdgpu1 set to manually installed. python3-nxmx is already the newest version (0.0.7-1). python3-nxmx set to manually installed. cpp-15 is already the newest version (15.2.0-17). cpp-15 set to manually installed. libapparmor1 is already the newest version (4.1.7-2). libapparmor1 set to manually installed. python3-jaraco.functools is already the newest version (4.1.0-1). python3-jaraco.functools set to manually installed. python-matplotlib-data is already the newest version (3.10.7+dfsg1-3). python-matplotlib-data set to manually installed. libncursesw6 is already the newest version (6.6+20251231-1+b1). libncursesw6 set to manually installed. adwaita-icon-theme is already the newest version (50.0-1). adwaita-icon-theme set to manually installed. glycin-loaders is already the newest version (2.0.8-1). glycin-loaders set to manually installed. xorg-sgml-doctools is already the newest version (1:1.12.1-1). xorg-sgml-doctools set to manually installed. libglut3.12 is already the newest version (3.4.0-6+b2). libglut3.12 set to manually installed. debianutils is already the newest version (5.23.2+b1). libcbf-dev is already the newest version (0.9.7+dfsg1-5.1+b1). libcbf-dev set to manually installed. libwacom-common is already the newest version (2.18.0-1). libwacom-common set to manually installed. libasound2-data is already the newest version (1.2.15.3-1). libasound2-data set to manually installed. ncurses-base is already the newest version (6.6+20251231-1). python3-biopython is already the newest version (1.86+dfsg-1+b1). python3-biopython set to manually installed. python3-reportlab is already the newest version (4.4.10-1). python3-reportlab set to manually installed. python3-attr is already the newest version (26.1.0-1). python3-attr set to manually installed. init-system-helpers is already the newest version (1.69). libboost-date-time1.90-dev is already the newest version (1.90.0-6). libboost-date-time1.90-dev set to manually installed. groff-base is already the newest version (1.24.1-1). groff-base set to manually installed. libxslt1.1 is already the newest version (1.1.45-0.1). libxslt1.1 set to manually installed. python3-decorator is already the newest version (5.2.1-2). python3-decorator set to manually installed. liblzma-dev is already the newest version (5.8.3-1). liblzma-dev set to manually installed. python3-pygments is already the newest version (2.19.2+dfsg-1). python3-pygments set to manually installed. libmmdb2-dev is already the newest version (2.0.22-1+b3). libmmdb2-dev set to manually installed. libjpeg62-turbo is already the newest version (1:3.1.3-4). libjpeg62-turbo set to manually installed. libc6-dev is already the newest version (2.42-15). libc6-dev set to manually installed. python3-zopfli is already the newest version (0.4.1-1). python3-zopfli set to manually installed. python3-pil is already the newest version (12.2.0-1). python3-pil set to manually installed. libglu1-mesa-dev is already the newest version (9.0.2-1.1+b4). libglu1-mesa-dev set to manually installed. debhelper is already the newest version (13.31). debhelper set to manually installed. libcurl4-openssl-dev is already the newest version (8.20.0-1). libcurl4-openssl-dev set to manually installed. libopus0 is already the newest version (1.6.1-1+b1). libopus0 set to manually installed. python3-pint is already the newest version (0.25.3-1). python3-pint set to manually installed. libtiff-dev is already the newest version (4.7.1-2). libtiff-dev set to manually installed. libaom3 is already the newest version (3.13.1-2+b1). libaom3 set to manually installed. libp11-kit0 is already the newest version (0.26.2-2). libp11-kit0 set to manually installed. libpython3.13-stdlib is already the newest version (3.13.12-1). libpython3.13-stdlib set to manually installed. libwxgtk-gl3.2-1t64 is already the newest version (3.2.9+dfsg-1+b1). libwxgtk-gl3.2-1t64 set to manually installed. linux-libc-dev is already the newest version (6.19.14-1). linux-libc-dev set to manually installed. python3-kiwisolver is already the newest version (1.5.0-1). python3-kiwisolver set to manually installed. python3-pyqt5.sip is already the newest version (12.18.0-1). python3-pyqt5.sip set to manually installed. libfontconfig1 is already the newest version (2.17.1-5). libfontconfig1 set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. libboost-chrono1.90.0 is already the newest version (1.90.0-6). libboost-chrono1.90.0 set to manually installed. libcrypt1 is already the newest version (1:4.5.1-1+b1). at-spi2-common is already the newest version (2.60.3-1). at-spi2-common set to manually installed. python3-pyparsing is already the newest version (3.3.2-2). python3-pyparsing set to manually installed. python3-zipp is already the newest version (3.23.0-1). python3-zipp set to manually installed. perl-base is already the newest version (5.40.1-7+b1). libavahi-client3 is already the newest version (0.8-18). libavahi-client3 set to manually installed. python3.14-minimal is already the newest version (3.14.5~rc1-1). python3.14-minimal set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libxtst6 is already the newest version (2:1.2.5-1+b2). libxtst6 set to manually installed. python3-ufolib2 is already the newest version (0.18.1+dfsg1-1). python3-ufolib2 set to manually installed. libboost-python1.90.0 is already the newest version (1.90.0-6). libboost-python1.90.0 set to manually installed. libharfbuzz-subset0 is already the newest version (12.3.2-2+b2). libharfbuzz-subset0 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. pymol-data is already the newest version (3.1.0+dfsg-1). pymol-data set to manually installed. libhdf5-hl-cpp-310 is already the newest version (1.14.6+repack-2+b1). libhdf5-hl-cpp-310 set to manually installed. libpango-1.0-0 is already the newest version (1.57.1-2). libpango-1.0-0 set to manually installed. libboost-test1.90.0 is already the newest version (1.90.0-6). libboost-test1.90.0 set to manually installed. libxxhash0 is already the newest version (0.8.3-2+b2). libxxhash0 set to manually installed. libstdc++6 is already the newest version (16-20260425-1). libstdc++6 set to manually installed. libuuid1 is already the newest version (2.42-6). libx11-dev is already the newest version (2:1.8.13-1). libx11-dev set to manually installed. libngtcp2-crypto-ossl-dev is already the newest version (1.22.1-1). libngtcp2-crypto-ossl-dev set to manually installed. binutils-common is already the newest version (2.46-3). binutils-common set to manually installed. libheif-plugin-libde265 is already the newest version (1.21.2-4). libheif-plugin-libde265 set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b2). libxcb-shm0 set to manually installed. util-linux is already the newest version (2.42-6). python3-uharfbuzz is already the newest version (0.53.3-1). python3-uharfbuzz set to manually installed. libcolord2 is already the newest version (1.4.8-3). libcolord2 set to manually installed. libccp4f0t64 is already the newest version (8.0.0-5+b1). libccp4f0t64 set to manually installed. libhdf5-cpp-310 is already the newest version (1.14.6+repack-2+b1). libhdf5-cpp-310 set to manually installed. libssl3t64 is already the newest version (3.6.2-1). libboost-python-dev is already the newest version (1.90.0.2). libboost-python-dev set to manually installed. hostname is already the newest version (3.25+b1). libboost-atomic1.90.0 is already the newest version (1.90.0-6). libboost-atomic1.90.0 set to manually installed. libsmartcols1 is already the newest version (2.42-6). libxcb-util1 is already the newest version (0.4.1-1+b2). libxcb-util1 set to manually installed. python3-sympy is already the newest version (1.14.0-3). python3-sympy set to manually installed. libboost-serialization1.90.0 is already the newest version (1.90.0-6). libboost-serialization1.90.0 set to manually installed. fonts-urw-base35 is already the newest version (20200910-9). fonts-urw-base35 set to manually installed. libboost-thread-dev is already the newest version (1.90.0.2). libboost-thread-dev set to manually installed. systemd-sysv is already the newest version (260.1-1). systemd-sysv set to manually installed. libice6 is already the newest version (2:1.1.1-1+b2). libice6 set to manually installed. libvulkan1 is already the newest version (1.4.341.0-1). libvulkan1 set to manually installed. libyuv0 is already the newest version (0.0.1922.20260106-1+b1). libyuv0 set to manually installed. glycin-thumbnailers is already the newest version (2.0.8-1). glycin-thumbnailers set to manually installed. libflac14 is already the newest version (1.5.0+ds-5+b1). libflac14 set to manually installed. libboost-timer-dev is already the newest version (1.90.0.2). libboost-timer-dev set to manually installed. libpython3.14-dev is already the newest version (3.14.5~rc1-1). libpython3.14-dev set to manually installed. libx11-data is already the newest version (2:1.8.13-1). libx11-data set to manually installed. libfabric1 is already the newest version (2.1.0-1.1+b2). libfabric1 set to manually installed. libnettle8t64 is already the newest version (3.10.2-1+b1). libnettle8t64 set to manually installed. libxcb-render0 is already the newest version (1.17.0-2+b2). libxcb-render0 set to manually installed. libngtcp2-16 is already the newest version (1.22.1-1). libngtcp2-16 set to manually installed. libwebpdemux2 is already the newest version (1.5.0-0.1+b2). libwebpdemux2 set to manually installed. libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). python3-cycler is already the newest version (0.12.1-2). python3-cycler set to manually installed. libxrandr2 is already the newest version (2:1.5.4-1+b4). libxrandr2 set to manually installed. findutils is already the newest version (4.10.0-4). libjpeg62-turbo-dev is already the newest version (1:3.1.3-4). libjpeg62-turbo-dev set to manually installed. python3-tk is already the newest version (3.13.9-3+b1). python3-tk set to manually installed. libssh2-1-dev is already the newest version (1.11.1-2). libssh2-1-dev set to manually installed. python3-matplotlib is already the newest version (3.10.7+dfsg1-3). python3-matplotlib set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b1). libmmdb2-0 is already the newest version (2.0.22-1+b3). libmmdb2-0 set to manually installed. libxcb-shape0 is already the newest version (1.17.0-2+b2). libxcb-shape0 set to manually installed. libnghttp3-dev is already the newest version (1.15.0-1). libnghttp3-dev set to manually installed. liblzma5 is already the newest version (5.8.3-1). python3-flexcache is already the newest version (0.3-3). python3-flexcache set to manually installed. xfonts-utils is already the newest version (1:7.7+7+b1). xfonts-utils set to manually installed. libinput10 is already the newest version (1.31.1-1). libinput10 set to manually installed. libwayland-egl1 is already the newest version (1.24.0-2+b2). libwayland-egl1 set to manually installed. libwxbase3.2-1t64 is already the newest version (3.2.9+dfsg-1+b1). libwxbase3.2-1t64 set to manually installed. libgl1-mesa-dri is already the newest version (26.0.6-1). libgl1-mesa-dri set to manually installed. libmd0 is already the newest version (1.1.0-2+b2). x11proto-dev is already the newest version (2025.1-1). x11proto-dev set to manually installed. libnl-route-3-200 is already the newest version (3.12.0-2+b1). libnl-route-3-200 set to manually installed. libgl-dev is already the newest version (1.7.0-3+b1). libgl-dev set to manually installed. libsframe3 is already the newest version (2.46-3). libsframe3 set to manually installed. libdconf1 is already the newest version (0.49.0-4+b1). libdconf1 set to manually installed. python3-psutil is already the newest version (7.1.0-1+b1). python3-psutil set to manually installed. libmpg123-0t64 is already the newest version (1.33.5-1). libmpg123-0t64 set to manually installed. libnl-3-200 is already the newest version (3.12.0-2+b1). libnl-3-200 set to manually installed. libsndfile1 is already the newest version (1.2.2-4+b1). libsndfile1 set to manually installed. openssl is already the newest version (3.6.2-1). openssl set to manually installed. libboost-container1.90-dev is already the newest version (1.90.0-6). libboost-container1.90-dev set to manually installed. python3-certifi is already the newest version (2026.4.22+ds-1). python3-certifi set to manually installed. libgnutls28-dev is already the newest version (3.8.13-1). libgnutls28-dev set to manually installed. libpython3.14-stdlib is already the newest version (3.14.5~rc1-1). libpython3.14-stdlib set to manually installed. python3-h5py-serial is already the newest version (3.16.0-2). python3-h5py-serial set to manually installed. libogg0 is already the newest version (1.3.6-2+b1). libogg0 set to manually installed. libgnutls30t64 is already the newest version (3.8.13-1). libgnutls30t64 set to manually installed. libgudev-1.0-0 is already the newest version (238-7+b2). libgudev-1.0-0 set to manually installed. gcc-16-base is already the newest version (16-20260425-1). libasan8 is already the newest version (16-20260425-1). libasan8 set to manually installed. dwz is already the newest version (0.16-4). dwz set to manually installed. python3-flexparser is already the newest version (0.4-2). python3-flexparser set to manually installed. libctf0 is already the newest version (2.46-3). libctf0 set to manually installed. python3-lz4 is already the newest version (4.4.5+dfsg-1+b1). python3-lz4 set to manually installed. liblzf1 is already the newest version (3.6-4+b4). liblzf1 set to manually installed. dbus-daemon is already the newest version (1.16.2-4). dbus-daemon set to manually installed. python3-editables is already the newest version (0.5-3). python3-editables set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-11). libsasl2-modules-db set to manually installed. dbus-session-bus-common is already the newest version (1.16.2-4). dbus-session-bus-common set to manually installed. libonig5 is already the newest version (6.9.10-1+b1). libonig5 set to manually installed. libxcb-sync1 is already the newest version (1.17.0-2+b2). libxcb-sync1 set to manually installed. python3-pip is already the newest version (26.0.1+dfsg-1). python3-pip set to manually installed. libpsl-dev is already the newest version (0.21.5-1). libpsl-dev set to manually installed. libxau6 is already the newest version (1:1.0.11-1+b2). libxau6 set to manually installed. libnghttp2-14 is already the newest version (1.69.0-1). libnghttp2-14 set to manually installed. build-essential is already the newest version (12.12+b1). build-essential set to manually installed. libelf1t64 is already the newest version (0.195-1). libelf1t64 set to manually installed. libdebhelper-perl is already the newest version (13.31). libdebhelper-perl set to manually installed. libmd4c0 is already the newest version (0.5.2-2+b2). libmd4c0 set to manually installed. libboost-numpy1.90-dev is already the newest version (1.90.0-6). libboost-numpy1.90-dev set to manually installed. libqt5test5t64 is already the newest version (5.15.17+dfsg-8). libqt5test5t64 set to manually installed. libwebpdecoder3 is already the newest version (1.5.0-0.1+b2). libwebpdecoder3 set to manually installed. binutils-loongarch64-linux-gnu is already the newest version (2.46-3). binutils-loongarch64-linux-gnu set to manually installed. libattr1 is already the newest version (1:2.5.2-4). libboost-serialization1.90-dev is already the newest version (1.90.0-6). libboost-serialization1.90-dev set to manually installed. libxml2-16 is already the newest version (2.15.2+dfsg-0.1). libxml2-16 set to manually installed. librdmacm1t64 is already the newest version (63.0-1). librdmacm1t64 set to manually installed. python3-more-itertools is already the newest version (10.8.0-1). python3-more-itertools set to manually installed. libcups2t64 is already the newest version (2.4.18-1). libcups2t64 set to manually installed. python3-pil.imagetk is already the newest version (12.2.0-1). python3-pil.imagetk set to manually installed. libboost-timer1.90.0 is already the newest version (1.90.0-6). libboost-timer1.90.0 set to manually installed. libhdf5-hl-fortran-310 is already the newest version (1.14.6+repack-2+b1). libhdf5-hl-fortran-310 set to manually installed. libsensors5 is already the newest version (1:3.6.2-2+b2). libsensors5 set to manually installed. patch is already the newest version (2.8-2+b1). patch set to manually installed. libaec-dev is already the newest version (1.1.6-1). libaec-dev set to manually installed. libhdf5-fortran-310 is already the newest version (1.14.6+repack-2+b1). libhdf5-fortran-310 set to manually installed. python3-lxml is already the newest version (6.1.0-1). python3-lxml set to manually installed. libhwloc15 is already the newest version (2.13.0-2). libhwloc15 set to manually installed. python3.13 is already the newest version (3.13.12-1). python3.13 set to manually installed. libwebp7 is already the newest version (1.5.0-0.1+b2). libwebp7 set to manually installed. Solving dependencies... The following NEW packages will be installed: pkg-config 127.0.0.1 - - [15/Jun/2026 21:16:54] "GET /./pkg-config_2.5.1-4_loong64.deb HTTP/1.1" 200 - 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 18.1 kB of archives. After this operation, 34.8 kB of additional disk space will be used. Get:1 http://localhost:35627 ./ pkg-config 2.5.1-4 [18.1 kB] Fetched 18.1 kB in 0s (936 kB/s) Chrooting into /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP/ Selecting previously unselected package pkg-config:loong64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64641 files and directories currently installed.) Preparing to unpack .../pkg-config_2.5.1-4_loong64.deb ... Unpacking pkg-config:loong64 (2.5.1-4) ... Chrooting into /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP/ Setting up pkg-config:loong64 (2.5.1-4) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP (Reading database ... 64646 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.SAqqgeKRFP... I: success in 720.9240 seconds Downloading dependency 488 of 671: libpython3.13-minimal:loong64=3.13.12-1 Downloading dependency 489 of 671: python3-numpy-dev:loong64=1:2.4.4+ds-2 Downloading dependency 490 of 671: dpkg-dev:loong64=1.23.7 Downloading dependency 491 of 671: libdrm-amdgpu1:loong64=2.4.131-1+b1 Downloading dependency 492 of 671: python3-nxmx:loong64=0.0.7-1 Downloading dependency 493 of 671: cpp-15:loong64=15.2.0-17 Downloading dependency 494 of 671: libapparmor1:loong64=4.1.7-2 Downloading dependency 495 of 671: python3-jaraco.functools:loong64=4.1.0-1 Downloading dependency 496 of 671: python-matplotlib-data:loong64=3.10.7+dfsg1-3 Downloading dependency 497 of 671: libncursesw6:loong64=6.6+20251231-1+b1 Downloading dependency 498 of 671: adwaita-icon-theme:loong64=50.0-1 Downloading dependency 499 of 671: glycin-loaders:loong64=2.0.8-1 Downloading dependency 500 of 671: xorg-sgml-doctools:loong64=1:1.12.1-1 Downloading dependency 501 of 671: 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Downloading dependency 603 of 671: libnghttp3-dev:loong64=1.15.0-1 Downloading dependency 604 of 671: liblzma5:loong64=5.8.3-1 Downloading dependency 605 of 671: python3-flexcache:loong64=0.3-3 Downloading dependency 606 of 671: xfonts-utils:loong64=1:7.7+7+b1 Downloading dependency 607 of 671: libinput10:loong64=1.31.1-1 Downloading dependency 608 of 671: libwayland-egl1:loong64=1.24.0-2+b2 Downloading dependency 609 of 671: libwxbase3.2-1t64:loong64=3.2.9+dfsg-1+b1 Downloading dependency 610 of 671: libgl1-mesa-dri:loong64=26.0.6-1 Downloading dependency 611 of 671: libmd0:loong64=1.1.0-2+b2 Downloading dependency 612 of 671: x11proto-dev:loong64=2025.1-1 Downloading dependency 613 of 671: libnl-route-3-200:loong64=3.12.0-2+b1 Downloading dependency 614 of 671: libgl-dev:loong64=1.7.0-3+b1 Downloading dependency 615 of 671: libsframe3:loong64=2.46-3 Downloading dependency 616 of 671: libdconf1:loong64=0.49.0-4+b1 Downloading dependency 617 of 671: python3-psutil:loong64=7.1.0-1+b1 Downloading dependency 618 of 671: libmpg123-0t64:loong64=1.33.5-1 Downloading dependency 619 of 671: libnl-3-200:loong64=3.12.0-2+b1 Downloading dependency 620 of 671: libsndfile1:loong64=1.2.2-4+b1 Downloading dependency 621 of 671: openssl:loong64=3.6.2-1 Downloading dependency 622 of 671: libboost-container1.90-dev:loong64=1.90.0-6 Downloading dependency 623 of 671: python3-certifi:loong64=2026.4.22+ds-1 Downloading dependency 624 of 671: libgnutls28-dev:loong64=3.8.13-1 Downloading dependency 625 of 671: libpython3.14-stdlib:loong64=3.14.5~rc1-1 Downloading dependency 626 of 671: python3-h5py-serial:loong64=3.16.0-2 Downloading dependency 627 of 671: libogg0:loong64=1.3.6-2+b1 Downloading dependency 628 of 671: libgnutls30t64:loong64=3.8.13-1 Downloading dependency 629 of 671: libgudev-1.0-0:loong64=238-7+b2 Downloading dependency 630 of 671: gcc-16-base:loong64=16-20260425-1 Downloading dependency 631 of 671: libasan8:loong64=16-20260425-1 Downloading dependency 632 of 671: dwz:loong64=0.16-4 Downloading dependency 633 of 671: python3-flexparser:loong64=0.4-2 Downloading dependency 634 of 671: libctf0:loong64=2.46-3 Downloading dependency 635 of 671: python3-lz4:loong64=4.4.5+dfsg-1+b1 Downloading dependency 636 of 671: liblzf1:loong64=3.6-4+b4 Downloading dependency 637 of 671: dbus-daemon:loong64=1.16.2-4 Downloading dependency 638 of 671: python3-editables:loong64=0.5-3 Downloading dependency 639 of 671: libsasl2-modules-db:loong64=2.1.28+dfsg1-11 Downloading dependency 640 of 671: dbus-session-bus-common:loong64=1.16.2-4 Downloading dependency 641 of 671: libonig5:loong64=6.9.10-1+b1 Downloading dependency 642 of 671: libxcb-sync1:loong64=1.17.0-2+b2 Downloading dependency 643 of 671: python3-pip:loong64=26.0.1+dfsg-1 Downloading dependency 644 of 671: libpsl-dev:loong64=0.21.5-1 Downloading dependency 645 of 671: libxau6:loong64=1:1.0.11-1+b2 Downloading dependency 646 of 671: libnghttp2-14:loong64=1.69.0-1 Downloading dependency 647 of 671: build-essential:loong64=12.12+b1 Downloading dependency 648 of 671: libelf1t64:loong64=0.195-1 Downloading dependency 649 of 671: libdebhelper-perl:loong64=13.31 Downloading dependency 650 of 671: libmd4c0:loong64=0.5.2-2+b2 Downloading dependency 651 of 671: libboost-numpy1.90-dev:loong64=1.90.0-6 Downloading dependency 652 of 671: libqt5test5t64:loong64=5.15.17+dfsg-8 Downloading dependency 653 of 671: libwebpdecoder3:loong64=1.5.0-0.1+b2 Downloading dependency 654 of 671: binutils-loongarch64-linux-gnu:loong64=2.46-3 Downloading dependency 655 of 671: libattr1:loong64=1:2.5.2-4 Downloading dependency 656 of 671: libboost-serialization1.90-dev:loong64=1.90.0-6 Downloading dependency 657 of 671: libxml2-16:loong64=2.15.2+dfsg-0.1 Downloading dependency 658 of 671: librdmacm1t64:loong64=63.0-1 Downloading dependency 659 of 671: python3-more-itertools:loong64=10.8.0-1 Downloading dependency 660 of 671: libcups2t64:loong64=2.4.18-1 Downloading dependency 661 of 671: python3-pil.imagetk:loong64=12.2.0-1 Downloading dependency 662 of 671: libboost-timer1.90.0:loong64=1.90.0-6 Downloading dependency 663 of 671: libhdf5-hl-fortran-310:loong64=1.14.6+repack-2+b1 Downloading dependency 664 of 671: libsensors5:loong64=1:3.6.2-2+b2 Downloading dependency 665 of 671: patch:loong64=2.8-2+b1 Downloading dependency 666 of 671: libaec-dev:loong64=1.1.6-1 Downloading dependency 667 of 671: libhdf5-fortran-310:loong64=1.14.6+repack-2+b1 Downloading dependency 668 of 671: python3-lxml:loong64=6.1.0-1 Downloading dependency 669 of 671: libhwloc15:loong64=2.13.0-2 Downloading dependency 670 of 671: python3.13:loong64=3.13.12-1 Downloading dependency 671 of 671: libwebp7:loong64=1.5.0-0.1+b2 env --chdir=/srv/rebuilderd/tmp/rebuilderdYD1Gc7/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1778336580 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildi2UngC/debrebuild.sbuildrc.kdM3mWjEAk7Z sbuild --build=loong64 --host=loong64 --arch-any --no-arch-all --chroot=/srv/rebuilderd/tmp/debrebuildi2UngC/debrebuild.tar.0GboMWg8HIL0 --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=cctbx-2026.4+ds2+~3.28.0+ds1 /srv/rebuilderd/tmp/rebuilderdYD1Gc7/inputs/cctbx_2026.4+ds2+~3.28.0+ds1-2.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl sbuild (Debian sbuild) 0.91.9 (05 May 2026) on loong64-01 +==============================================================================+ | cctbx 2026.4+ds2+~3.28.0+ds1-2 (loong64) Tue, 16 Jun 2026 01:18:10 +0000 | +==============================================================================+ Package: cctbx Version: 2026.4+ds2+~3.28.0+ds1-2 Source Version: 2026.4+ds2+~3.28.0+ds1-2 Distribution: unstable Machine Architecture: loong64 Host Architecture: loong64 Build Architecture: loong64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildi2UngC/debrebuild.tar.0GboMWg8HIL0 to /srv/rebuilderd/tmp/tmp.sbuild.MjJ3Cl1lrj... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Tue, 16 Jun 2026 01:18:44 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdYD1Gc7/inputs/cctbx_2026.4+ds2+~3.28.0+ds1-2.dsc exists in /srv/rebuilderd/tmp/rebuilderdYD1Gc7/inputs; copying to chroot +------------------------------------------------------------------------------+ | Install package build dependencies Tue, 16 Jun 2026 01:18:49 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython, python3-editables, python3-h5py (>= 3), python3-hatchling, python3-hdf5plugin, python3-legacy-cgi, python3-matplotlib, python3-mrcfile, python3-msgpack, python3-natsort, python3-numpy, python3-nxmx, python3-ordered-set, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, rsync, scons, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython, python3-editables, python3-h5py (>= 3), python3-hatchling, python3-hdf5plugin, python3-legacy-cgi, python3-matplotlib, python3-mrcfile, python3-msgpack, python3-natsort, python3-numpy, python3-nxmx, python3-ordered-set, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, rsync, scons, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-q80u2Y/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Tue, 16 Jun 2026 01:19:04 +0000 | +------------------------------------------------------------------------------+ Arch check ok (loong64 included in amd64 arm64 armel armhf i386 loong64 ppc64 ppc64el riscv64 s390x) +------------------------------------------------------------------------------+ | Build environment Tue, 16 Jun 2026 01:19:07 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.0.10+deb14-loong64 #1 SMP PREEMPT Debian 7.0.10-1 (2026-05-27) loong64 (loongarch64) Toolchain package versions: binutils_2.46-3 dpkg-dev_1.23.7 g++-15_15.2.0-17 gcc-15_15.2.0-17 libc6-dev_2.42-15 libstdc++-15-dev_15.2.0-17 libstdc++6_16-20260425-1 linux-libc-dev_6.19.14-1 Package versions: adwaita-icon-theme_50.0-1 architecture-properties_0.2.6+b2 at-spi2-common_2.60.3-1 autoconf_2.72-6 automake_1:1.18.1-4 autopoint_0.23.2-2 autotools-dev_20240727.1+nmu1 base-files_14+b1 base-passwd_3.6.8+b1 bash_5.3-3 binutils_2.46-3 binutils-common_2.46-3 binutils-loongarch64-linux-gnu_2.46-3 bsdextrautils_2.42-6 bubblewrap_0.11.2-1 build-essential_12.12+b1 bzip2_1.0.8-6+b2 ca-certificates_20260223 comerr-dev_2.1-1.47.4-1 coreutils_9.10-1 cpp_4:15.2.0-5+b1 cpp-15_15.2.0-17 cpp-15-loongarch64-linux-gnu_15.2.0-17 cpp-loongarch64-linux-gnu_4:15.2.0-5+b1 dash_0.5.12-12+b1 dbus_1.16.2-4 dbus-bin_1.16.2-4 dbus-daemon_1.16.2-4 dbus-session-bus-common_1.16.2-4 dbus-system-bus-common_1.16.2-4 dbus-user-session_1.16.2-4 dconf-gsettings-backend_0.49.0-4+b1 dconf-service_0.49.0-4+b1 debconf_1.5.92 debhelper_13.31 debianutils_5.23.2+b1 dh-autoreconf_22 dh-exec_0.31+b2 dh-python_7.20260309 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1+b1 dpkg_1.23.7 dpkg-dev_1.23.7 dwz_0.16-4 fftw-dev_2.1.5-8 fftw2_2.1.5-8 file_1:5.46-5+b2 findutils_4.10.0-4 fontconfig_2.17.1-5 fontconfig-config_2.17.1-5 fonts-dejavu-core_2.37-9 fonts-dejavu-extra_2.37-9 fonts-dejavu-mono_2.37-9 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 fonts-lato_2.015-1 fonts-lyx_2.5.1-1 fonts-urw-base35_20200910-9 g++_4:15.2.0-5+b1 g++-15_15.2.0-17 g++-15-loongarch64-linux-gnu_15.2.0-17 g++-loongarch64-linux-gnu_4:15.2.0-5+b1 gcc_4:15.2.0-5+b1 gcc-15_15.2.0-17 gcc-15-base_15.2.0-17 gcc-15-loongarch64-linux-gnu_15.2.0-17 gcc-16-base_16-20260425-1 gcc-loongarch64-linux-gnu_4:15.2.0-5+b1 gettext_0.23.2-2 gettext-base_0.23.2-2 glycin-loaders_2.0.8-1 glycin-thumbnailers_2.0.8-1 grep_3.12-1+b1 groff-base_1.24.1-1 gtk-update-icon-cache_4.22.3+ds-1 gzip_1.13-1+b1 hdf5-helpers_1.14.6+repack-2+b1 hicolor-icon-theme_0.18-2 hostname_3.25+b1 ibverbs-providers_63.0-1 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 jq_1.8.1-5 krb5-multidev_1.22.1-2+b1 libabsl20260107_20260107.0-5 libacl1_2.3.2-3 libaec-dev_1.1.6-1 libaec0_1.1.6-1 libann-cctbx-dev_1.1.2+doc-9+b1 libann-cctbx0_1.1.2+doc-9+b1 libantlr3c-3.4-0_3.4+dfsg-4+b3 libantlr3c-dev_3.4+dfsg-4+b3 libaom3_3.13.1-2+b1 libapparmor1_4.1.7-2 libarchive-zip-perl_1.68-1 libasan8_16-20260425-1 libasound2-data_1.2.15.3-1 libasound2t64_1.2.15.3-1+b1 libasyncns0_0.8-7+b2 libatk-bridge2.0-0t64_2.60.3-1 libatk1.0-0t64_2.60.3-1 libatomic1_16-20260425-1 libatspi2.0-0t64_2.60.3-1 libattr1_1:2.5.2-4 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b1 libavahi-client3_0.8-18 libavahi-common-data_0.8-18 libavahi-common3_0.8-18 libavif16_1.4.1-1+b1 libbinutils_2.46-3 libblas3_3.12.1-7+b2 libblkid1_2.42-6 libboost-atomic1.90-dev_1.90.0-6 libboost-atomic1.90.0_1.90.0-6 libboost-chrono1.90-dev_1.90.0-6 libboost-chrono1.90.0_1.90.0-6 libboost-container1.90-dev_1.90.0-6 libboost-container1.90.0_1.90.0-6 libboost-date-time1.90-dev_1.90.0-6 libboost-date-time1.90.0_1.90.0-6 libboost-dev_1.90.0.2 libboost-exception1.90-dev_1.90.0-6 libboost-graph1.90-dev_1.90.0-6 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python3.13-tk_3.13.12-1 python3.14_3.14.5~rc1-1 python3.14-dev_3.14.5~rc1-1 python3.14-minimal_3.14.5~rc1-1 python3.14-tk_3.14.5~rc1-1 readline-common_8.3-4 rpcsvc-proto_1.4.3-1+b1 rsync_3.4.2+ds1-2 scons_4.10.1+dfsg-2 sed_4.9-3 sensible-utils_0.0.26 sfftw-dev_2.1.5-8 sfftw2_2.1.5-8 sgml-base_1.31+nmu1 shared-mime-info_2.4-5+b2 sphinx-rtd-theme-common_3.1.0+dfsg-1 systemd_260.1-1 systemd-sysv_260.1-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-4 tzdata_2026b-1 unicode-data_17.0.0-2 util-linux_2.42-6 w3c-sgml-lib_1.3-3 x11-common_1:7.7+26 x11proto-dev_2025.1-1 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+7+b1 xkb-data_2.47-1 xml-core_0.20 xorg-sgml-doctools_1:1.12.1-1 xtrans-dev_1.6.0-1 xz-utils_5.8.3-1 zlib1g_1:1.3.dfsg+really1.3.2-3 zlib1g-dev_1:1.3.dfsg+really1.3.2-3 +------------------------------------------------------------------------------+ | Build Tue, 16 Jun 2026 01:19:07 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cctbx Binary: libcctbx0, libcctbx-dev, python3-cctbx Architecture: amd64 arm64 armel armhf i386 loong64 ppc64 ppc64el riscv64 s390x Version: 2026.4+ds2+~3.28.0+ds1-2 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Radostan Riedel , Roland Mas , Homepage: https://github.com/cctbx/cctbx_project Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/science-team/cctbx Vcs-Git: https://salsa.debian.org/science-team/cctbx.git Testsuite: autopkgtest Testsuite-Triggers: bitshuffle, g++, python3-all, python3-dials-data, python3-h5py, python3-pytest, python3-pytest-mock, python3-pytest-regressions Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython , python3-editables, python3-h5py (>= 3) , python3-hatchling, python3-hdf5plugin , python3-legacy-cgi , python3-matplotlib , python3-mrcfile , python3-msgpack , python3-natsort , python3-numpy , python3-nxmx , python3-ordered-set , python3-pint , python3-pip, python3-procrunner , python3-psutil , python3-pycbf (>= 0.9.7+dfsg1-2~) , python3-pymol , python3-pytest , python3-requests , python3-scipy , python3-setuptools, python3-six, python3-tqdm , python3-wxgtk4.0 , rsync, scons Package-List: libcctbx-dev deb libdevel optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x libcctbx0 deb libs optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x python3-cctbx deb python optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x Checksums-Sha1: 5e60d06b89f1699b656b862bdd573e0aa6e9f7e9 389428 cctbx_2026.4+ds2+~3.28.0+ds1.orig-dxtbx.tar.xz 38bd6a6cd30ab14b3625f047c7a2d81bf123d050 104764504 cctbx_2026.4+ds2+~3.28.0+ds1.orig.tar.xz 735ed13f3ed4f0702718293ff838fa9e2fb5bd9b 420028 cctbx_2026.4+ds2+~3.28.0+ds1-2.debian.tar.xz Checksums-Sha256: 4625660418c42cc98744fd97074c7c1f26439a999662b7fddf382e0cc4304940 389428 cctbx_2026.4+ds2+~3.28.0+ds1.orig-dxtbx.tar.xz cd34f3a526d15c3dff4cc4d71eb422e4d1a7db6b6d7dd5a58bf77ac335accb63 104764504 cctbx_2026.4+ds2+~3.28.0+ds1.orig.tar.xz b206ac624b799af58a32d092535caf017f89b784f29c2329af02ecd127d24a18 420028 cctbx_2026.4+ds2+~3.28.0+ds1-2.debian.tar.xz Files: cce155aeff8245950f9b530da21c0a69 389428 cctbx_2026.4+ds2+~3.28.0+ds1.orig-dxtbx.tar.xz 77bf15749d9ae55e8d2a9d2e79184a8d 104764504 cctbx_2026.4+ds2+~3.28.0+ds1.orig.tar.xz 93f6a27f8a00d1a597a7aeff2c22489c 420028 cctbx_2026.4+ds2+~3.28.0+ds1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEtBU2D1kett1zr/uD0w3s0lmTIvwFAmn/VlcACgkQ0w3s0lmT IvyyQRAAuXO095dsS9xnqZPsZCZibx4asxp21g3x2z55HOgUCUpwAu28c6NQbxbu ymLkKGn8nZMhBLdZQs2a1AYvahDLH9gWEuwj7jDzh63Q9qwVx04pmII1Rs4EB7FF kQ/OG6Ney5CZ+VvCKealwVWMJdpOq9CU94Rap599uAI2ZvGZ1kfCVa2VdoegeB88 amv7m9NZUFH7i8hOmAGPJb7O7PKBqWP80WgMnQ7H5pJ3UMYjWk59tAngKiOykqXx Ov2kpT5351C5Wx/U2+r33p56tflE2k6vcKO7gls1iZQ4qxC7886/egjAfLeJrdnD kbq9nUJiNHP/ud4A4iRTJzVYQbcWTeCIqu8VKYI4HyW9MtO/Txf0hWcNJMQzLITQ SAMMXunZ6Zl4uB7VFvOnLFuVPTdXqc5WWRpm9rSp5F53CC4B7NYpMqfZzoHJ0wEZ ieJWWayV82QIcJSfKoNBFZrCjzdc3+z843p6otirhWsouvd5H/WIxpoDg897DZpQ p2mBvgtzV+D2V6RJE+8MPh/7z3EA7RNMXPOSd7V7C9Ljx3gLF5OuEyE0hsGBTM2/ vu4IXiF/x0xyHvmAFzXEAv2jVdjU0jASbO2ChMwCCIOi8ZQHlXn/oq44wn8kY71v tMd3eM6QWc1xpU0vwvqxFBrsSGcNG06vGUhPX3VSNtxlywbl1I8= =dYRv -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./cctbx_2026.4+ds2+~3.28.0+ds1-2.dsc: missing OpenPGP keyrings dpkg-source: info: verifying ./cctbx_2026.4+ds2+~3.28.0+ds1-2.dsc dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting cctbx in /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 dpkg-source: info: unpacking cctbx_2026.4+ds2+~3.28.0+ds1.orig.tar.xz dpkg-source: info: unpacking cctbx_2026.4+ds2+~3.28.0+ds1.orig-dxtbx.tar.xz dpkg-source: info: unpacking cctbx_2026.4+ds2+~3.28.0+ds1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying workaround_env_config.patch dpkg-source: info: applying boost_adaptbx.patch dpkg-source: info: applying reproducible-timestamp.patch dpkg-source: info: applying libtbx_env-per-python-version.patch dpkg-source: info: applying iotbx_with_system_libraries.patch dpkg-source: info: applying 0007-iotbx-mtz-load-ccp4-data-from-the-right-directory.patch dpkg-source: info: applying 0009-scons-soname.patch dpkg-source: info: applying 0010-fix-cbflib_adaptbx-compilation-with-the-system-cbfli.patch dpkg-source: info: applying 0011-dxtbx-use-the-system-libraries.patch dpkg-source: info: applying 0013-dxtbx-do-not-modify-the-HDF5_PLUGIN_PATH.patch dpkg-source: info: applying 0015-dxtbx-adapte-the-boost_python-link-name.patch dpkg-source: info: applying 0016-cctbx-avoid-FTBFS-when-cctbx-is-already-installed.patch dpkg-source: info: applying 0017-cctbx-do-not-hide-sign-comparison.patch dpkg-source: info: applying 0017-dxtbx-fix-for-unsigned-char-arch.patch dpkg-source: info: applying 0016-unactivated-ucif-compilation.patch dpkg-source: info: applying 0017-smtbx-save-the-generated-test-file-under-tmp.patch dpkg-source: info: applying 0018-iotbx-link-with-ccp4c-instead-of-ccp4io.patch dpkg-source: info: applying 0019-cbflib_adapter-link-cbf-private-with-cbf.patch dpkg-source: info: applying 0020-spotfinder-link-with-dxtbxspotfinder.patch dpkg-source: info: applying 0021-rstbx-link-with-ann_adaptor.patch dpkg-source: info: applying 0022-rstbx-link-rstbx_integration_ext-with-ann_adaptor.patch dpkg-source: info: applying 0023-rstbx-use-the-annself_excluded-namespace-from-ann-cc.patch dpkg-source: info: applying 0024-more-ann-ann-cctbx.patch dpkg-source: info: applying 0031-Add-missing-ctdint-header.patch dpkg-source: info: applying 0032-no-future.patch dpkg-source: info: applying 0027-Replace-unmaintained-orderedset-with-ordered_set.patch dpkg-source: info: applying 0028-Fix-pip-invocation.patch dpkg-source: info: applying 0028-dxtbx-force-pathlib-in-data-fetcher.patch dpkg-source: info: applying 0030_broken_six.patch dpkg-source: info: applying 0030-Stop-linking-against-boost_system.patch clean up apt cache ------------------ Can't exec "apt-get": No such file or directory at /usr/libexec/sbuild-usernsexec line 613. Failed to exec: apt-get: No such file or directory at /usr/libexec/sbuild-usernsexec line 614. E: cleaning the apt cache failed with 512 Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1778336580 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package cctbx dpkg-buildpackage: info: source version 2026.4+ds2+~3.28.0+ds1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Roland Mas dpkg-source --before-build . dpkg-buildpackage: info: host architecture loong64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' cp -f debian/pyproject.toml pyproject.toml cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_clean -- --name cctbx pybuild --clean -i python{version} -p "3.14 3.13" --name cctbx --parallel=8 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_auto_clean --sourcedirectory=dxtbx -- --name dxtbx pybuild --clean -i python{version} -p "3.14 3.13" --name dxtbx --dir dxtbx --parallel=8 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; find . -name __pycache__ -type d -exec rm -rf {} \; rm -f pyproject.toml rm -rf annlib annlib_adaptbx rm -rf ccp4io ccp4io_adaptbx rm -rf gui_resources make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars debian/files rm -fr -- debian/libcctbx0/ debian/tmp/ debian/libcctbx-dev/ debian/python3-cctbx/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' cp -f debian/pyproject.toml pyproject.toml cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_configure -- --name cctbx pybuild --configure -i python{version} -p "3.14 3.13" --name cctbx --parallel=8 dh_auto_configure --sourcedirectory=dxtbx -- --name dxtbx pybuild --configure -i python{version} -p "3.14 3.13" --name dxtbx --dir dxtbx --parallel=8 dh_auto_configure -- --name cctbx -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ \ && {interpreter} /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io" pybuild --configure -i python{version} -p "3.14 3.13" --name cctbx -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ && {interpreter} /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io" --parallel=8 I: pybuild base:385: mkdir -p '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && cd '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io Python: 3.14.5rc1 "/usr/bin/python3.14" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Enable KOKKOS: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 command_version_suffix: None Relocatable paths anchored at: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_ Top-down list of all modules involved: wxtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/wxtbx" serialtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/serialtbx" rstbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx" spotfinder "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder" mmtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx" gltbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx" dxtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx" iotbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx" smtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx" ucif "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ucif" crys3d "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/crys3d" cctbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx" chiltbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/chiltbx" ccp4io+adaptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io" "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io_adaptbx" cbflib_adaptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx" annlib+adaptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib" "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx" scitbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx" fable "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable" cma_es "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cma_es" omptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/omptbx" boost+adaptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost" "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx" tbxx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/tbxx" libtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx" Creating files in build directory: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/crys3d/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/wxtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/libtbx_refresh.py" Generating C++ header files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder Obtaining file:///build/reproducible-path/cctbx-2026.4%2Bds2%2B~3.28.0%2Bds1/dxtbx Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Preparing editable metadata (pyproject.toml): started Preparing editable metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: dxtbx Building editable for dxtbx (pyproject.toml): started Building editable for dxtbx (pyproject.toml): finished with status 'done' Created wheel for dxtbx: filename=dxtbx-3.28.0-py3-none-any.whl size=6893 sha256=abe7ddbeee1170daa14156d83c6a258be214f4605d78bb4536ded8e79a7f59cf Stored in directory: /tmp/pip-ephem-wheel-cache-w1mod5w5/wheels/fd/e6/f1/5fd32bb1c4c87f39fed3c3c12ab08e4a66ca14b9cf03d04a01 Successfully built dxtbx Installing collected packages: dxtbx Successfully installed dxtbx-3.28.0 Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/cctbx/eltbx" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/cctbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/crys3d/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/smtbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/gltbx" fonts: 8x13 9x15 10x20 Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/libtbx_refresh.py" Done. I: pybuild base:385: mkdir -p '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build'_ && cd '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build'_ && python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx annlib ccp4io Python: 3.13.12 "/usr/bin/python3.13" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Enable KOKKOS: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 command_version_suffix: None Relocatable paths anchored at: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_ Top-down list of all modules involved: wxtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/wxtbx" serialtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/serialtbx" rstbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx" spotfinder "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder" mmtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx" gltbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx" dxtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx" iotbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx" smtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx" ucif "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ucif" crys3d "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/crys3d" cctbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx" chiltbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/chiltbx" ccp4io+adaptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io" "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io_adaptbx" cbflib_adaptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx" annlib+adaptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib" "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx" scitbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx" fable "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable" cma_es "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cma_es" omptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/omptbx" boost+adaptbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost" "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx" tbxx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/tbxx" libtbx "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx" Creating files in build directory: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/crys3d/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/wxtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/libtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/libtbx_refresh.py" Generating C++ header files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include/scitbx/array_family" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder Obtaining file:///build/reproducible-path/cctbx-2026.4%2Bds2%2B~3.28.0%2Bds1/dxtbx Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Preparing editable metadata (pyproject.toml): started Preparing editable metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: dxtbx Building editable for dxtbx (pyproject.toml): started Building editable for dxtbx (pyproject.toml): finished with status 'done' Created wheel for dxtbx: filename=dxtbx-3.28.0-py3-none-any.whl size=6893 sha256=abe7ddbeee1170daa14156d83c6a258be214f4605d78bb4536ded8e79a7f59cf Stored in directory: /tmp/pip-ephem-wheel-cache-89cyf8n1/wheels/b7/15/e8/75deb7a384be422f368e9107298b6c97c0ca80bb1e8b595baf Successfully built dxtbx Installing collected packages: dxtbx Successfully installed dxtbx-3.28.0 Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/cctbx/eltbx" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include/cctbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/crys3d/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include/smtbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/gltbx" fonts: 8x13 9x15 10x20 Processing: "/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/libtbx_refresh.py" Done. make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' # Python modules dh_auto_build -- --name cctbx pybuild --build -i python{version} -p "3.14 3.13" --name cctbx --parallel=8 I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx * Building wheel... running bdist_wheel running build running build_py creating build/lib/boost copying boost/rational.py -> build/lib/boost copying boost/python.py -> build/lib/boost copying boost/optional.py -> build/lib/boost copying boost/tuple.py -> build/lib/boost copying boost/__init__.py -> build/lib/boost copying boost/std_pair.py -> build/lib/boost creating build/lib/cctbx_website copying cctbx_website/libtbx_refresh.py -> build/lib/cctbx_website copying cctbx_website/__init__.py -> build/lib/cctbx_website copying cctbx_website/run_tests.py -> build/lib/cctbx_website creating build/lib/boost_adaptbx copying boost_adaptbx/libtbx_refresh.py -> build/lib/boost_adaptbx copying boost_adaptbx/hybrid_times.py -> build/lib/boost_adaptbx copying boost_adaptbx/__init__.py -> build/lib/boost_adaptbx copying boost_adaptbx/run_tests.py -> build/lib/boost_adaptbx creating build/lib/mmtbx copying mmtbx/lattice.py -> build/lib/mmtbx copying mmtbx/proq2.py -> build/lib/mmtbx copying mmtbx/superpose.py -> build/lib/mmtbx copying mmtbx/map_tools.py -> build/lib/mmtbx copying mmtbx/process_predicted_model.py -> build/lib/mmtbx copying mmtbx/restraints.py -> build/lib/mmtbx copying mmtbx/arrays.py -> build/lib/mmtbx copying mmtbx/f_model_info.py -> build/lib/mmtbx copying mmtbx/xmanip.py -> build/lib/mmtbx copying mmtbx/real_space_correlation.py -> build/lib/mmtbx copying mmtbx/pdb_distances.py -> build/lib/mmtbx copying mmtbx/pdbtools.py -> build/lib/mmtbx copying mmtbx/find_peaks.py -> build/lib/mmtbx copying mmtbx/model_vs_data.py -> build/lib/mmtbx copying mmtbx/xmanip_tasks.py -> build/lib/mmtbx copying mmtbx/msa.py -> build/lib/mmtbx copying mmtbx/resolve_resources.py -> build/lib/mmtbx copying mmtbx/invariant_domain.py -> build/lib/mmtbx copying mmtbx/libtbx_refresh.py -> build/lib/mmtbx copying mmtbx/grow_density.py -> build/lib/mmtbx copying mmtbx/pdb_symmetry.py -> build/lib/mmtbx copying mmtbx/domains_from_pae.py -> build/lib/mmtbx copying mmtbx/__init__.py -> build/lib/mmtbx copying mmtbx/clashes.py -> build/lib/mmtbx copying mmtbx/run_tests.py -> build/lib/mmtbx creating build/lib/xcif copying xcif/__init__.py -> build/lib/xcif copying xcif/run_tests.py -> build/lib/xcif creating build/lib/cootbx copying cootbx/ligand_checklist.py -> build/lib/cootbx copying cootbx/xmlrpc_server.py -> build/lib/cootbx copying cootbx/hydrogens_button.py -> build/lib/cootbx copying cootbx/view_refinement.py -> build/lib/cootbx copying cootbx/simple_zoom_list.py -> build/lib/cootbx copying cootbx/validation_lists.py -> build/lib/cootbx copying cootbx/interactive_edit.py -> build/lib/cootbx copying cootbx/watch_file.py -> build/lib/cootbx copying cootbx/__init__.py -> build/lib/cootbx creating build/lib/fable copying fable/intrinsics.py -> build/lib/fable copying fable/simple_compilation.py -> build/lib/fable copying fable/tst_ext.py -> build/lib/fable copying fable/tokenization.py -> build/lib/fable copying fable/tst_read.py -> build/lib/fable copying fable/__init__.py -> build/lib/fable copying fable/equivalence.py -> build/lib/fable copying fable/read.py -> build/lib/fable copying fable/utils.py -> build/lib/fable copying fable/tst_cout_compile.py -> build/lib/fable copying fable/tst_equivalence.py -> build/lib/fable copying fable/run_tests.py -> build/lib/fable copying fable/tst_cout.py -> build/lib/fable copying fable/cout.py -> build/lib/fable creating build/lib/smtbx copying smtbx/development.py -> build/lib/smtbx copying smtbx/libtbx_refresh.py -> build/lib/smtbx copying smtbx/__init__.py -> build/lib/smtbx copying smtbx/utils.py -> build/lib/smtbx copying smtbx/run_tests.py -> build/lib/smtbx creating build/lib/fast_linalg copying fast_linalg/__init__.py -> build/lib/fast_linalg creating build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/tst.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/copy_files.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/__init__.py -> build/lib/ccp4io_adaptbx creating build/lib/wxtbx copying wxtbx/segmentedctrl.py -> build/lib/wxtbx copying wxtbx/mtz_dump.py -> build/lib/wxtbx copying wxtbx/bitmaps.py -> build/lib/wxtbx copying wxtbx/layout.py -> build/lib/wxtbx copying wxtbx/info_panels.py -> build/lib/wxtbx copying wxtbx/listeditor.py -> build/lib/wxtbx copying wxtbx/checklistctrl.py -> build/lib/wxtbx copying wxtbx/windows.py -> build/lib/wxtbx copying wxtbx/icons.py -> build/lib/wxtbx copying wxtbx/pdb_editor.py -> build/lib/wxtbx copying wxtbx/anomalous_scattering.py -> build/lib/wxtbx copying wxtbx/misc_dialogs.py -> build/lib/wxtbx copying wxtbx/metallicbutton.py -> build/lib/wxtbx copying wxtbx/xtriage.py -> build/lib/wxtbx copying wxtbx/browser.py -> build/lib/wxtbx copying wxtbx/polygon.py -> build/lib/wxtbx copying wxtbx/b_plot.py -> build/lib/wxtbx copying wxtbx/sequence_view.py -> build/lib/wxtbx copying wxtbx/tables.py -> build/lib/wxtbx copying wxtbx/wx4_compatibility.py -> build/lib/wxtbx copying wxtbx/monitor.py -> build/lib/wxtbx copying wxtbx/path_dialogs.py -> build/lib/wxtbx copying wxtbx/app.py -> build/lib/wxtbx copying wxtbx/symmetry_dialog.py -> build/lib/wxtbx copying wxtbx/adp_statistics.py -> build/lib/wxtbx copying wxtbx/process_control.py -> build/lib/wxtbx copying wxtbx/__init__.py -> build/lib/wxtbx copying wxtbx/errors.py -> build/lib/wxtbx copying wxtbx/heavy_atoms.py -> build/lib/wxtbx copying wxtbx/custom_restraints.py -> build/lib/wxtbx copying wxtbx/qstat_view.py -> build/lib/wxtbx copying wxtbx/ensemble_validation.py -> build/lib/wxtbx copying wxtbx/polygon_db_viewer.py -> build/lib/wxtbx copying wxtbx/utils.py -> build/lib/wxtbx creating build/lib/cctbx copying cctbx/r_free_utils.py -> build/lib/cctbx copying cctbx/translation_search.py -> build/lib/cctbx copying cctbx/euclidean_model_matching.py -> build/lib/cctbx copying cctbx/adptbx.py -> build/lib/cctbx copying cctbx/dmtbx.py -> build/lib/cctbx copying cctbx/run_examples.py -> build/lib/cctbx copying cctbx/math_module.py -> build/lib/cctbx copying cctbx/libtbx_refresh.py -> build/lib/cctbx copying cctbx/french_wilson.py -> build/lib/cctbx copying cctbx/__init__.py -> build/lib/cctbx copying cctbx/anharmonic.py -> build/lib/cctbx copying cctbx/statistics.py -> build/lib/cctbx copying cctbx/symmetry_search.py -> build/lib/cctbx copying cctbx/multipolar.py -> build/lib/cctbx copying cctbx/run_tests.py -> build/lib/cctbx copying cctbx/crystal_orientation.py -> build/lib/cctbx creating build/lib/iotbx copying iotbx/map_model_manager.py -> build/lib/iotbx copying iotbx/crystal_symmetry_from_any.py -> build/lib/iotbx copying iotbx/ranges.py -> build/lib/iotbx copying iotbx/merging_statistics.py -> build/lib/iotbx copying iotbx/phases.py -> build/lib/iotbx copying iotbx/csv_utils.py -> build/lib/iotbx copying iotbx/option_parser.py -> build/lib/iotbx copying iotbx/table_one.py -> build/lib/iotbx copying iotbx/symmetry.py -> build/lib/iotbx copying iotbx/map_manager.py -> build/lib/iotbx copying iotbx/map_tools.py -> build/lib/iotbx copying iotbx/simple_parser.py -> build/lib/iotbx copying iotbx/reflection_file_reader.py -> build/lib/iotbx copying iotbx/mtrix_biomt.py -> build/lib/iotbx copying iotbx/reflection_file_utils.py -> build/lib/iotbx copying iotbx/extract_xtal_data.py -> build/lib/iotbx copying iotbx/wildcard.py -> build/lib/iotbx copying iotbx/pymol.py -> build/lib/iotbx copying iotbx/builders.py -> build/lib/iotbx copying iotbx/logfiles.py -> build/lib/iotbx copying iotbx/format.py -> build/lib/iotbx copying iotbx/cif_mtz_data_labels.py -> build/lib/iotbx copying iotbx/cli_parser.py -> build/lib/iotbx copying iotbx/reflection_file_editor.py -> build/lib/iotbx copying iotbx/libtbx_refresh.py -> build/lib/iotbx copying iotbx/file_reader.py -> build/lib/iotbx copying iotbx/builders_depending_on_smtbx.py -> build/lib/iotbx copying iotbx/phil.py -> build/lib/iotbx copying iotbx/__init__.py -> build/lib/iotbx copying iotbx/data_plots.py -> build/lib/iotbx copying iotbx/poscar.py -> build/lib/iotbx copying iotbx/reflection_file_converter.py -> build/lib/iotbx copying iotbx/run_tests.py -> build/lib/iotbx creating build/lib/annlib_adaptbx copying annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx copying annlib_adaptbx/run_tests.py -> build/lib/annlib_adaptbx creating build/lib/spotfinder copying spotfinder/exception.py -> build/lib/spotfinder copying spotfinder/__init__.py -> build/lib/spotfinder copying spotfinder/run_tests.py -> build/lib/spotfinder creating build/lib/rstbx copying rstbx/__init__.py -> build/lib/rstbx copying rstbx/utils.py -> build/lib/rstbx copying rstbx/run_tests.py -> build/lib/rstbx creating build/lib/cma_es copying cma_es/cma_es_interface.py -> build/lib/cma_es copying cma_es/tst_cma_es.py -> build/lib/cma_es copying cma_es/__init__.py -> build/lib/cma_es copying cma_es/run_tests.py -> build/lib/cma_es creating build/lib/cbflib_adaptbx copying cbflib_adaptbx/copy_files.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/exercise_compression.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/__init__.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/run_tests.py -> build/lib/cbflib_adaptbx creating build/lib/libtbx copying libtbx/containers.py -> build/lib/libtbx copying libtbx/pyplot.py -> build/lib/libtbx copying libtbx/tst_run_tests_parallel_unique_dirs.py -> build/lib/libtbx copying libtbx/tst_word_index_generator.py -> build/lib/libtbx copying libtbx/assert_utils.py -> build/lib/libtbx copying libtbx/tst_fully_buffered_timeout.py -> build/lib/libtbx copying libtbx/cpp_function_name.py -> build/lib/libtbx copying libtbx/program_template.py -> build/lib/libtbx copying libtbx/tst_python_code_parsing.py -> build/lib/libtbx copying libtbx/tst_easy_mp_multicore.py -> build/lib/libtbx copying libtbx/clear_paths.py -> build/lib/libtbx copying libtbx/console_utils.py -> build/lib/libtbx copying libtbx/start_print_trace.py -> build/lib/libtbx copying libtbx/tst_representation.py -> build/lib/libtbx copying libtbx/tst_citations.py -> build/lib/libtbx copying libtbx/complex_math.py -> build/lib/libtbx copying libtbx/runtime_utils.py -> build/lib/libtbx copying libtbx/tst_topological_sort.py -> build/lib/libtbx copying libtbx/word_index_generator.py -> build/lib/libtbx copying libtbx/dlite.py -> build/lib/libtbx copying libtbx/option_parser.py -> build/lib/libtbx copying libtbx/thread_utils.py -> build/lib/libtbx copying libtbx/cli.py -> build/lib/libtbx copying libtbx/easy_run.py -> build/lib/libtbx copying libtbx/tst_runtime_utils.py -> build/lib/libtbx copying libtbx/subprocess_with_fixes.py -> build/lib/libtbx copying libtbx/object_oriented_patterns.py -> build/lib/libtbx copying libtbx/easy_mp.py -> build/lib/libtbx copying libtbx/tst_containers.py -> build/lib/libtbx copying libtbx/introspection.py -> build/lib/libtbx copying libtbx/xmlrpc_server_example.py -> build/lib/libtbx copying libtbx/topological_sort.py -> build/lib/libtbx copying libtbx/tst_math_utils.py -> build/lib/libtbx copying libtbx/env_config.py -> build/lib/libtbx copying libtbx/math_utils.py -> build/lib/libtbx copying libtbx/pkg_utils.py -> build/lib/libtbx copying libtbx/forward_compatibility.py -> build/lib/libtbx copying libtbx/crossmingw.py -> build/lib/libtbx copying libtbx/find_reference_cycles.py -> build/lib/libtbx copying libtbx/tst_xmlrpc_utils.py -> build/lib/libtbx copying libtbx/configure.py -> build/lib/libtbx copying libtbx/file_clutter.py -> build/lib/libtbx copying libtbx/clusterTests.py -> build/lib/libtbx copying libtbx/tst_thread_utils.py -> build/lib/libtbx copying libtbx/python_code_parsing.py -> build/lib/libtbx copying libtbx/smart_open.py -> build/lib/libtbx copying libtbx/easy_pickle.py -> build/lib/libtbx copying libtbx/tst_version.py -> build/lib/libtbx copying libtbx/callbacks.py -> build/lib/libtbx copying libtbx/version.py -> build/lib/libtbx copying libtbx/citations.py -> build/lib/libtbx copying libtbx/tst_mahalanobis.py -> build/lib/libtbx copying libtbx/libtbx_refresh.py -> build/lib/libtbx copying libtbx/easy_profile.py -> build/lib/libtbx copying libtbx/pyframe.py -> build/lib/libtbx copying libtbx/tst_easy_mp_state.py -> build/lib/libtbx copying libtbx/tst_object_oriented_patterns.py -> build/lib/libtbx copying libtbx/load_env.py -> build/lib/libtbx copying libtbx/log.py -> build/lib/libtbx copying libtbx/tst_scheduling.py -> build/lib/libtbx copying libtbx/tst_easy_pickle.py -> build/lib/libtbx copying libtbx/__init__.py -> build/lib/libtbx copying libtbx/tst_easy_mp.py -> build/lib/libtbx copying libtbx/str_utils.py -> build/lib/libtbx copying libtbx/code_analysis.py -> build/lib/libtbx copying libtbx/tst_binary_search.py -> build/lib/libtbx copying libtbx/metric_prefixes.py -> build/lib/libtbx copying libtbx/wingide.py -> build/lib/libtbx copying libtbx/tst_program_template.py -> build/lib/libtbx copying libtbx/tst_utils.py -> build/lib/libtbx copying libtbx/tst_path.py -> build/lib/libtbx copying libtbx/binary_search.py -> build/lib/libtbx copying libtbx/tst_find_unused_imports.py -> build/lib/libtbx copying libtbx/xmlrpc_utils.py -> build/lib/libtbx copying libtbx/path.py -> build/lib/libtbx copying libtbx/mpi4py.py -> build/lib/libtbx copying libtbx/simplexml.py -> build/lib/libtbx copying libtbx/utils.py -> build/lib/libtbx copying libtbx/tst_run_tests_parallel_retry.py -> build/lib/libtbx copying libtbx/progress.py -> build/lib/libtbx copying libtbx/objgraph.py -> build/lib/libtbx copying libtbx/table_utils.py -> build/lib/libtbx copying libtbx/resource_monitor.py -> build/lib/libtbx copying libtbx/tst_str_utils.py -> build/lib/libtbx copying libtbx/tst_dlite.py -> build/lib/libtbx copying libtbx/run_tests.py -> build/lib/libtbx copying libtbx/cluster.py -> build/lib/libtbx copying libtbx/tst_add_docstrings_with_ai.py -> build/lib/libtbx copying libtbx/try_hello_world_c.py -> build/lib/libtbx creating build/lib/simtbx copying simtbx/__init__.py -> build/lib/simtbx copying simtbx/run_tests.py -> build/lib/simtbx creating build/lib/omptbx copying omptbx/tst.py -> build/lib/omptbx copying omptbx/__init__.py -> build/lib/omptbx creating build/lib/gltbx copying gltbx/gl_managed.py -> build/lib/gltbx copying gltbx/generate_functions_bpl.py -> build/lib/gltbx copying gltbx/images.py -> build/lib/gltbx copying gltbx/wx_cube.py -> build/lib/gltbx copying gltbx/wx_motion_on_tab.py -> build/lib/gltbx copying gltbx/wx_viewers_images.py -> build/lib/gltbx copying gltbx/wx_scene.py -> build/lib/gltbx copying gltbx/viewer_utils.py -> build/lib/gltbx copying gltbx/tst.py -> build/lib/gltbx copying gltbx/util.py -> build/lib/gltbx copying gltbx/wx_viewer_leapmotion.py -> build/lib/gltbx copying gltbx/quadrics.py -> build/lib/gltbx copying gltbx/wx_viewer_example.py -> build/lib/gltbx copying gltbx/tst_ellipsoids.py -> build/lib/gltbx copying gltbx/generate_fonts_ucs_cpp.py -> build/lib/gltbx copying gltbx/extract_opengl_specs.py -> build/lib/gltbx copying gltbx/gl.py -> build/lib/gltbx copying gltbx/libtbx_refresh.py -> build/lib/gltbx copying gltbx/wx_viewer.py -> build/lib/gltbx copying gltbx/tst_fonts.py -> build/lib/gltbx copying gltbx/fonts.py -> build/lib/gltbx copying gltbx/__init__.py -> build/lib/gltbx copying gltbx/glu.py -> build/lib/gltbx copying gltbx/generate_defines_bpl.py -> build/lib/gltbx copying gltbx/tst_viewer_utils.py -> build/lib/gltbx copying gltbx/wx_ellipsoids_test.py -> build/lib/gltbx copying gltbx/run_tests.py -> build/lib/gltbx creating build/lib/serialtbx copying serialtbx/__init__.py -> build/lib/serialtbx creating build/lib/scitbx copying scitbx/cubicle_neighbors.py -> build/lib/scitbx copying scitbx/r3_utils.py -> build/lib/scitbx copying scitbx/smoothing.py -> build/lib/scitbx copying scitbx/regular_grid_on_unit_sphere.py -> build/lib/scitbx copying scitbx/differential_evolution.py -> build/lib/scitbx copying scitbx/restraints.py -> build/lib/scitbx copying scitbx/minimizers.py -> build/lib/scitbx copying scitbx/cross_entropy.py -> build/lib/scitbx copying scitbx/simplex.py -> build/lib/scitbx copying scitbx/direct_search_simulated_annealing.py -> build/lib/scitbx copying scitbx/lbfgsb.py -> build/lib/scitbx copying scitbx/libtbx_refresh.py -> build/lib/scitbx copying scitbx/genetic_algorithm_with_mp.py -> build/lib/scitbx copying scitbx/fftpack.py -> build/lib/scitbx copying scitbx/minpack.py -> build/lib/scitbx copying scitbx/__init__.py -> build/lib/scitbx copying scitbx/golden_section_search.py -> build/lib/scitbx copying scitbx/run_tests.py -> build/lib/scitbx creating build/lib/qttbx copying qttbx/phil.py -> build/lib/qttbx copying qttbx/__init__.py -> build/lib/qttbx creating build/lib/fftw3tbx copying fftw3tbx/tst_ext.py -> build/lib/fftw3tbx copying fftw3tbx/libtbx_refresh.py -> build/lib/fftw3tbx copying fftw3tbx/__init__.py -> build/lib/fftw3tbx creating build/lib/cctbx_website/command_line copying cctbx_website/command_line/tst_comment_to_docstring.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/comment_to_docstring.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/edit_html.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/__init__.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/edit_for_boost.py -> build/lib/cctbx_website/command_line creating build/lib/cctbx_website/regression copying cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_12_script_compare_ss.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_11_script_1.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_8_doc_maps_intro.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_13_script_ideal_ss.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_1_template.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/__init__.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_py_from_html.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/exercise.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_17_script_rfactors.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/lib/cctbx_website/regression creating build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/rational.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/python.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/optional.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/tuple.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/__init__.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/std_pair.py -> build/lib/boost_adaptbx/boost creating build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/double_overflow.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_platform_info.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/segmentation_fault.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/gcd.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/divide_by_zero.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/inexact.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/__init__.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/int_overflow.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/lcm.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_environ_usage.py -> build/lib/boost_adaptbx/command_line creating build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/minimum_cut_enumerate.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/maximum_clique.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/clustering_algorithm.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/utility.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/breadth_first_search.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/__init__.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/graph_structure_comparison.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/min_cut_max_flow.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/connected_component_algorithm.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/metric.py -> build/lib/boost_adaptbx/graph creating build/lib/mmtbx/suitename copying mmtbx/suitename/suiteninit.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitename.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/transdent.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/diangle.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suiteninput.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitealyze.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitenout.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/dualparse.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/__init__.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/mainchain.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suites.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitenamedefs.py -> build/lib/mmtbx/suitename creating build/lib/mmtbx/kinemage copying mmtbx/kinemage/ribbons.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/__init__.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/nrubs.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/validation.py -> build/lib/mmtbx/kinemage creating build/lib/mmtbx/maps copying mmtbx/maps/tst_correlation.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_2.py -> build/lib/mmtbx/maps copying mmtbx/maps/fem.py -> build/lib/mmtbx/maps copying mmtbx/maps/composite_omit_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/superpose.py -> build/lib/mmtbx/maps copying mmtbx/maps/mtriage.py -> build/lib/mmtbx/maps copying mmtbx/maps/polder.py -> build/lib/mmtbx/maps copying mmtbx/maps/correlation.py -> build/lib/mmtbx/maps copying mmtbx/maps/kick.py -> build/lib/mmtbx/maps copying mmtbx/maps/__init__.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/xtrapol8.py -> build/lib/mmtbx/maps copying mmtbx/maps/utils.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/lib/mmtbx/maps copying mmtbx/maps/fobs_minus_fobs_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_3.py -> build/lib/mmtbx/maps copying mmtbx/maps/map_model_cc.py -> build/lib/mmtbx/maps creating build/lib/mmtbx/refinement copying mmtbx/refinement/targets.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tardy.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_select_best_starting_model.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/wx_tardy_pdb.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_fit_rotamers.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization_ncs_constraints.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_group.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/occupancies.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/print_statistics.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/select_best_starting_model.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/geometry_minimization.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/data.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/flip_peptide_side_chain.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/restraints.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/anomalous_scatterer_groups.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/group.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_refinement_flags.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/inspect_tardy_trajectory.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_occupancy_selections.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/calculators.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/refinement_flags.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/weights_params.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/rigid_body.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_misc.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/__init__.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/orca.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/wrappers.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization_monitor.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/adp_refinement.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/utils.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/weights.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/energy_monitor.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_real_space_simple.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_group_2.py -> build/lib/mmtbx/refinement creating build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_web_services.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/__init__.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_entry_request.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_web_services.py -> build/lib/mmtbx/wwpdb creating build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/riding.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_7.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_validate_H.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_minimize.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_6.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/neutron_utils.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/reduce_hydrogen.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_connectivity.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_manager.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/validate_H.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_8.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/parameterization.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_coefficients.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_0.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/__init__.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/find.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/connectivity.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/build_hydrogens.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_9.py -> build/lib/mmtbx/hydrogens creating build/lib/mmtbx/alignment copying mmtbx/alignment/__init__.py -> build/lib/mmtbx/alignment creating build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/tst.py -> build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/cif_parser.py -> build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/__init__.py -> build/lib/mmtbx/chemical_components creating build/lib/mmtbx/masks copying mmtbx/masks/tst_masks.py -> build/lib/mmtbx/masks copying mmtbx/masks/tst_asu_mask.py -> build/lib/mmtbx/masks copying mmtbx/masks/__init__.py -> build/lib/mmtbx/masks creating build/lib/mmtbx/den copying mmtbx/den/plot_weights.py -> build/lib/mmtbx/den copying mmtbx/den/__init__.py -> build/lib/mmtbx/den copying mmtbx/den/refinement.py -> build/lib/mmtbx/den creating build/lib/mmtbx/command_line copying mmtbx/command_line/sort_hetatms.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/undowser2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/suitename.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/show_r_factors_by_shell.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_sequence.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fetch_pdb.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ramalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rebuild_rotarama_cache.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/molprobity.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/barbed_wire_analysis.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/development_fem.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_suites.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/plan_sad_experiment.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/chiral_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_tls_groups.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mon_lib_cif_triage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdb_interpretation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rebuild_cablam_cache.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/models_as_chains.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls_as_xyz.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fmodel.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_puckers.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/altloc_remediate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cif_as_mtz.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mp_geo.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/atom_valence_simple.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cablam.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/table_one.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ligand_restraints_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/superpose.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/density_modification.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_to_structure_factors.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/holton_geometry_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/maps.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/select_best_starting_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/geometry_minimization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/debug_riding.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/nonbonded_overlaps.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/process_predicted_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ringer.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/emringer.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/probescore_ligand.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xtriage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/r_factor_statistics.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/comparama.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/water_b_factors.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ribbons.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rigid_bond_test.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reduce_cryoem_resolution.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/kinemage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/hbond.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_comparison.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validation_summary.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/clashscore2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_box.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xmanip.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/matthews.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/real_space_correlation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/remove_outliers.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/polder.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdbtools.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fab_elbow_angle.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/quantum_interface.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cbetadev.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/hydrogenate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/taam_minus_iam.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/next_gen_atom_typing.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/arginine_geometry.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/clashscore.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reciprocal_space_arrays.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/electrons.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/apply_ncs_to_ligand.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_bonds.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reduce2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rotalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/grow_density.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/f000.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/dynamics.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rank_scale_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ss_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cc_star.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/estimate_bijvoet_ratio.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/real_space_diff_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/distance_difference.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/prepare_pdb_deposition.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/angle.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validate_ligands.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/probe2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/sisa.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/where_is_that_cif_file.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/super.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mask.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/undowser.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mp_validate_bonds.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/omegalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/__init__.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/emringer_score.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cablam_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/search_pdb_symmetry.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_to_model_histogram.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/perigee.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_model_distances.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/maximum_entropy_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xtrapol8.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls_analysis.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_residue_in_pdb.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/refine_anomalous_substructure.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rama_z.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/verify_mon_lib_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_peaks_holes.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/secondary_structure_restraints.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/prune_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdb_atom_selection.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/secondary_structure_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mtz2map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/suitename_old.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fake_f_obs.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fobs_minus_fobs_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validate_H_cl_app.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/development_aev.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/massage_data.py -> build/lib/mmtbx/command_line creating build/lib/mmtbx/validation copying mmtbx/validation/undowser2.py -> build/lib/mmtbx/validation copying mmtbx/validation/fav_lists.py -> build/lib/mmtbx/validation copying mmtbx/validation/waters.py -> build/lib/mmtbx/validation copying mmtbx/validation/ramalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/barbed_wire_analysis.py -> build/lib/mmtbx/validation copying mmtbx/validation/sequence.py -> build/lib/mmtbx/validation copying mmtbx/validation/ligands.py -> build/lib/mmtbx/validation copying mmtbx/validation/cablam.py -> build/lib/mmtbx/validation copying mmtbx/validation/rna_validate.py -> build/lib/mmtbx/validation copying mmtbx/validation/holton_geometry_validation.py -> build/lib/mmtbx/validation copying mmtbx/validation/cbd_utils.py -> build/lib/mmtbx/validation copying mmtbx/validation/graphics.py -> build/lib/mmtbx/validation copying mmtbx/validation/comparama.py -> build/lib/mmtbx/validation copying mmtbx/validation/restraints.py -> build/lib/mmtbx/validation copying mmtbx/validation/experimental.py -> build/lib/mmtbx/validation copying mmtbx/validation/clashscore2.py -> build/lib/mmtbx/validation copying mmtbx/validation/convert_lists.py -> build/lib/mmtbx/validation copying mmtbx/validation/ensembles.py -> build/lib/mmtbx/validation copying mmtbx/validation/cbetadev.py -> build/lib/mmtbx/validation copying mmtbx/validation/clashscore.py -> build/lib/mmtbx/validation copying mmtbx/validation/rotalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/phi_psi_2_data.py -> build/lib/mmtbx/validation copying mmtbx/validation/validate_ligands.py -> build/lib/mmtbx/validation copying mmtbx/validation/undowser.py -> build/lib/mmtbx/validation copying mmtbx/validation/model_properties.py -> build/lib/mmtbx/validation copying mmtbx/validation/mp_validate_bonds.py -> build/lib/mmtbx/validation copying mmtbx/validation/omegalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/__init__.py -> build/lib/mmtbx/validation copying mmtbx/validation/comprehensive_residue.py -> build/lib/mmtbx/validation copying mmtbx/validation/rama_z.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/analyze_peptides.py -> build/lib/mmtbx/validation copying mmtbx/validation/utils.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_others_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/chain_comparison.py -> build/lib/mmtbx/validation copying mmtbx/validation/datasets.py -> build/lib/mmtbx/validation creating build/lib/mmtbx/geometry copying mmtbx/geometry/shared_types.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/topology.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/clash.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/altloc.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/sphere_surface_sampling.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/indexing.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/__init__.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/asa.py -> build/lib/mmtbx/geometry creating build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_metal_link_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_loop_closure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_apply_cif_restraints.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_maps_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_map_model_cc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_holton_geometry_validation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_map_type_parser.py -> build/lib/mmtbx/regression copying mmtbx/regression/make_fake_anomalous_data.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mtz2map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_geo_min_restraints_phil.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_command_line_input.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_timeout.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_statistics_output.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ncs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ligand_ncs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ringer.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sequence_validation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_vs_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_scattering_table.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_origin_ids.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_adp_restraints.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ml_estimate.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_minimize_chain.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_add_arrows_on_plot.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_multi_residue_class.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_flipping_his.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_scattering_type_registry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_superpose.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_real_space_correlation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_altloc_remediate.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_table_one.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sort_hetatms.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_chain_comparison.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_clashes.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_msa.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_anomalous_substructure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_dynamics_cli.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_no_cryst1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_prune_model.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validation_summary.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sampled_model_density.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_models_to_from_chains.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_box.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_psi_phi_extraction.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_and_dm.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_3.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_schrodinger_interface.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_geometry_minimization.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_pdbtools.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_altloc_chain_break.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rigid_bond_test.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_refine_anomalous_substructure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_vs_sequence.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_fd.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_alignment.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ribbons.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_chain_comparison_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_special_term_at_end.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_add_h_to_water.py -> build/lib/mmtbx/regression copying mmtbx/regression/__init__.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_isomorphous_difference_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_angle.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_lrv.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_4.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_utils.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_arginine_geometry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_examples.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_probe.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_ccs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cis_trans_peptide_link.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rank_scale_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cc_star.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_2.py -> build/lib/mmtbx/regression creating build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/kbu_refinery.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_mosaic.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/f_model_all_scales.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/__init__.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example2.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/mosaic.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/lib/mmtbx/bulk_solvent creating build/lib/mmtbx/real_space copying mmtbx/real_space/tst.py -> build/lib/mmtbx/real_space copying mmtbx/real_space/__init__.py -> build/lib/mmtbx/real_space creating build/lib/mmtbx/ligands copying mmtbx/ligands/tst_xtal_screens.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/hierarchy_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/tst_ready_set_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/elbow_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/electrons.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/ready_set_basics.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/tst_electron_scripting.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/rdkit_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/__init__.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/chemistry.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/xtal_screens.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/ready_set_utils.py -> build/lib/mmtbx/ligands creating build/lib/mmtbx/building copying mmtbx/building/tst_extend_sidechains_2.py -> build/lib/mmtbx/building copying mmtbx/building/minimize_chain.py -> build/lib/mmtbx/building copying mmtbx/building/extend_sidechains.py -> build/lib/mmtbx/building copying mmtbx/building/merge_models.py -> build/lib/mmtbx/building copying mmtbx/building/tst_extend_sidechains.py -> build/lib/mmtbx/building copying mmtbx/building/loop_idealization.py -> build/lib/mmtbx/building copying mmtbx/building/__init__.py -> build/lib/mmtbx/building copying mmtbx/building/cablam_idealization.py -> build/lib/mmtbx/building creating build/lib/mmtbx/max_lik copying mmtbx/max_lik/max_like_non_uniform.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/tst_maxlik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/tst_max_lik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/maxlik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/__init__.py -> build/lib/mmtbx/max_lik creating build/lib/mmtbx/utils copying mmtbx/utils/ntc.py -> build/lib/mmtbx/utils copying mmtbx/utils/rotatable_bonds.py -> build/lib/mmtbx/utils copying mmtbx/utils/fab_elbow_angle.py -> build/lib/mmtbx/utils copying mmtbx/utils/grid2d.py -> build/lib/mmtbx/utils copying mmtbx/utils/__init__.py -> build/lib/mmtbx/utils copying mmtbx/utils/tst_switch_rotamers.py -> build/lib/mmtbx/utils creating build/lib/mmtbx/nci copying mmtbx/nci/skew_kurt_plot.py -> build/lib/mmtbx/nci copying mmtbx/nci/hbond.py -> build/lib/mmtbx/nci copying mmtbx/nci/data_filtering.py -> build/lib/mmtbx/nci copying mmtbx/nci/tst_hbond.py -> build/lib/mmtbx/nci copying mmtbx/nci/__init__.py -> build/lib/mmtbx/nci creating build/lib/mmtbx/density_modification copying mmtbx/density_modification/__init__.py -> build/lib/mmtbx/density_modification copying mmtbx/density_modification/tst_density_modification.py -> build/lib/mmtbx/density_modification creating build/lib/mmtbx/ions copying mmtbx/ions/identify.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_approx_zn.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_symmetry_axis.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pickle.py -> build/lib/mmtbx/ions copying mmtbx/ions/halides.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_geometries.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_validate_mg.py -> build/lib/mmtbx/ions copying mmtbx/ions/build.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_k.py -> build/lib/mmtbx/ions copying mmtbx/ions/environment.py -> build/lib/mmtbx/ions copying mmtbx/ions/geometry.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_parameters.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_validate_ca.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_ca_svm.py -> build/lib/mmtbx/ions copying mmtbx/ions/__init__.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_environment.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_utils.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_ca.py -> build/lib/mmtbx/ions copying mmtbx/ions/utils.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_mg.py -> build/lib/mmtbx/ions creating build/lib/mmtbx/model copying mmtbx/model/model.py -> build/lib/mmtbx/model copying mmtbx/model/restraints.py -> build/lib/mmtbx/model copying mmtbx/model/__init__.py -> build/lib/mmtbx/model copying mmtbx/model/statistics.py -> build/lib/mmtbx/model copying mmtbx/model/utils.py -> build/lib/mmtbx/model creating build/lib/mmtbx/reduce copying mmtbx/reduce/Optimizers.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/InteractionGraph.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/Movers.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/__init__.py -> build/lib/mmtbx/reduce creating build/lib/mmtbx/f_model copying mmtbx/f_model/f_model.py -> build/lib/mmtbx/f_model copying mmtbx/f_model/f_model_info.py -> build/lib/mmtbx/f_model copying mmtbx/f_model/__init__.py -> build/lib/mmtbx/f_model creating build/lib/mmtbx/ncs copying mmtbx/ncs/cartesian_restraints.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ligands.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/tncs.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_search.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_restraints_group_list.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/__init__.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_params.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_utils.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs.py -> build/lib/mmtbx/ncs creating build/lib/mmtbx/dynamics copying mmtbx/dynamics/constants.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/ensemble_cd.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/simulated_annealing.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/tst_sa.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/cartesian_dynamics.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/tst_cartesian_dynamics.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/__init__.py -> build/lib/mmtbx/dynamics creating build/lib/mmtbx/tls copying mmtbx/tls/perm10.py -> build/lib/mmtbx/tls copying mmtbx/tls/analysis.py -> build/lib/mmtbx/tls copying mmtbx/tls/tls_as_xyz.py -> build/lib/mmtbx/tls copying mmtbx/tls/command_line.py -> build/lib/mmtbx/tls copying mmtbx/tls/ladp.py -> build/lib/mmtbx/tls copying mmtbx/tls/optimise_amplitudes.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm15.py -> build/lib/mmtbx/tls copying mmtbx/tls/tools.py -> build/lib/mmtbx/tls copying mmtbx/tls/decompose.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm12.py -> build/lib/mmtbx/tls copying mmtbx/tls/__init__.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm13.py -> build/lib/mmtbx/tls copying mmtbx/tls/utils.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm14.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm11.py -> build/lib/mmtbx/tls creating build/lib/mmtbx/solvent copying mmtbx/solvent/ensemble_ordered_solvent.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/map_to_water.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/__init__.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/ordered_solvent.py -> build/lib/mmtbx/solvent creating build/lib/mmtbx/programs copying mmtbx/programs/undowser2.py -> build/lib/mmtbx/programs copying mmtbx/programs/suitename.py -> build/lib/mmtbx/programs copying mmtbx/programs/model_vs_sequence.py -> build/lib/mmtbx/programs copying mmtbx/programs/ramalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/barbed_wire_analysis.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_suites.py -> build/lib/mmtbx/programs copying mmtbx/programs/chiral_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/fetch.py -> build/lib/mmtbx/programs copying mmtbx/programs/fmodel.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_puckers.py -> build/lib/mmtbx/programs copying mmtbx/programs/atom_valence_simple.py -> build/lib/mmtbx/programs copying mmtbx/programs/cablam.py -> build/lib/mmtbx/programs copying mmtbx/programs/ligand_restraints_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate.py -> build/lib/mmtbx/programs copying mmtbx/programs/holton_geometry_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/debug_riding.py -> build/lib/mmtbx/programs copying mmtbx/programs/nonbonded_overlaps.py -> build/lib/mmtbx/programs copying mmtbx/programs/process_predicted_model.py -> build/lib/mmtbx/programs copying mmtbx/programs/emringer.py -> build/lib/mmtbx/programs copying mmtbx/programs/probescore_ligand.py -> build/lib/mmtbx/programs copying mmtbx/programs/comparama.py -> build/lib/mmtbx/programs copying mmtbx/programs/water_b_factors.py -> build/lib/mmtbx/programs copying mmtbx/programs/ribbons.py -> build/lib/mmtbx/programs copying mmtbx/programs/reduce_cryoem_resolution.py -> build/lib/mmtbx/programs copying mmtbx/programs/hbond.py -> build/lib/mmtbx/programs copying mmtbx/programs/clashscore2.py -> build/lib/mmtbx/programs copying mmtbx/programs/matthews.py -> build/lib/mmtbx/programs copying mmtbx/programs/real_space_correlation.py -> build/lib/mmtbx/programs copying mmtbx/programs/polder.py -> build/lib/mmtbx/programs copying mmtbx/programs/pdbtools.py -> build/lib/mmtbx/programs copying mmtbx/programs/quantum_interface.py -> build/lib/mmtbx/programs copying mmtbx/programs/elbow_services.py -> build/lib/mmtbx/programs copying mmtbx/programs/cbetadev.py -> build/lib/mmtbx/programs copying mmtbx/programs/hydrogenate.py -> build/lib/mmtbx/programs copying mmtbx/programs/taam_minus_iam.py -> build/lib/mmtbx/programs copying mmtbx/programs/next_gen_atom_typing.py -> build/lib/mmtbx/programs copying mmtbx/programs/arginine_geometry.py -> build/lib/mmtbx/programs copying mmtbx/programs/clashscore.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_bonds.py -> build/lib/mmtbx/programs copying mmtbx/programs/reduce2.py -> build/lib/mmtbx/programs copying mmtbx/programs/rotalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/ss_idealization.py -> build/lib/mmtbx/programs copying mmtbx/programs/atom_selection.py -> build/lib/mmtbx/programs copying mmtbx/programs/prepare_pdb_deposition.py -> build/lib/mmtbx/programs copying mmtbx/programs/validate_ligands.py -> build/lib/mmtbx/programs copying mmtbx/programs/probe2.py -> build/lib/mmtbx/programs copying mmtbx/programs/mask.py -> build/lib/mmtbx/programs copying mmtbx/programs/undowser.py -> build/lib/mmtbx/programs copying mmtbx/programs/mp_validate_bonds.py -> build/lib/mmtbx/programs copying mmtbx/programs/omegalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/__init__.py -> build/lib/mmtbx/programs copying mmtbx/programs/cablam_idealization.py -> build/lib/mmtbx/programs copying mmtbx/programs/xtrapol8.py -> build/lib/mmtbx/programs copying mmtbx/programs/rama_z.py -> build/lib/mmtbx/programs copying mmtbx/programs/suitename_old.py -> build/lib/mmtbx/programs copying mmtbx/programs/pdb_as_cif.py -> build/lib/mmtbx/programs copying mmtbx/programs/ss_validation.py -> build/lib/mmtbx/programs creating build/lib/mmtbx/polygon copying mmtbx/polygon/tst.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/tst_polygon_data.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/__init__.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/output.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/tst_gui.py -> build/lib/mmtbx/polygon creating build/lib/mmtbx/sisa copying mmtbx/sisa/__init__.py -> build/lib/mmtbx/sisa creating build/lib/mmtbx/rotamer copying mmtbx/rotamer/nqh.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/sidechain_angles.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/graphics.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/tst_rotamer_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/rotamer_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/__init__.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/n_dim_table.py -> build/lib/mmtbx/rotamer creating build/lib/mmtbx/ringer copying mmtbx/ringer/tst_emringer.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_scoring.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/emringer.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/tst_em_rscc.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_rolling.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/__init__.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_rscc.py -> build/lib/mmtbx/ringer creating build/lib/mmtbx/rsr copying mmtbx/rsr/tst.py -> build/lib/mmtbx/rsr copying mmtbx/rsr/__init__.py -> build/lib/mmtbx/rsr creating build/lib/mmtbx/probe copying mmtbx/probe/tst_mmtbx_probe_ext.py -> build/lib/mmtbx/probe copying mmtbx/probe/AtomTypes.py -> build/lib/mmtbx/probe copying mmtbx/probe/Helpers.py -> build/lib/mmtbx/probe copying mmtbx/probe/__init__.py -> build/lib/mmtbx/probe copying mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/lib/mmtbx/probe creating build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_idealized_aa.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_metal_coordination.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/mmtbx_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/hydrogen_restrictions.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/cif_types.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_coordination.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/pdb_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_triage.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_carbo_linking.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_neutron_distance.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_selection.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_chiral_values.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rotamer_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/idealized_aa.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/conv_v2_v3.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_hand.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_types.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_chg.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_motif.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/server.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/bondlength_defaults.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_all_cif_files.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_user_supplied_library.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/conformation_dependent_restraints.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/rotamer_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_paral_geo.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_server.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/cif_triage.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_correct_hydrogens.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/__init__.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_superpose_ideal.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_deuterium_terminii.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_protein_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_linking.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_setup.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_mixins.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/geostd_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/lib/mmtbx/monomer_library creating build/lib/mmtbx/twinning copying mmtbx/twinning/probabalistic_detwinning.py -> build/lib/mmtbx/twinning copying mmtbx/twinning/__init__.py -> build/lib/mmtbx/twinning copying mmtbx/twinning/twin_f_model.py -> build/lib/mmtbx/twinning creating build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/regularize_from_pdb.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/find_ss_from_ca.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_segid.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_insertion_codes.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/secondary_structure_params.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/__init__.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/proteins.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/utils.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/ss_validation.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/nucleic_acids.py -> build/lib/mmtbx/secondary_structure creating build/lib/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/tst.py -> build/lib/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/__init__.py -> build/lib/mmtbx/atomic_environment_vectors creating build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/tst.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/sample_rotamers.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/rotamer_manager.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/all_his.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/__init__.py -> build/lib/mmtbx/idealized_aa_residues creating build/lib/mmtbx/scaling copying mmtbx/scaling/bayesian_estimator.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/make_param.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/outlier_plots.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/plan_sad_experiment.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/outlier_rejection.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/mean_f_rms_f.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/relative_wilson.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_absences.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/pre_scale.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/ta_alpha_beta_calc.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/basic_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/random_omit.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/xtriage.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/twmad_scale.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/sigmaa_estimation.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/matthews.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/remove_outliers.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_mean_f_rms_f.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_outlier.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/massage_twin_detwin_data.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_sigmaa.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/relative_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absence_likelihood.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absolute_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/thorough_outlier_test.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_massage_data.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/__init__.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absences.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/fa_estimation.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/pair_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_bayesian_estimator.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/data_statistics.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/twin_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_xtriage.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_plan_sad_experiment.py -> build/lib/mmtbx/scaling creating build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_03.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/pair_interaction.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_00.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_05.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_04.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_02.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_01.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/__init__.py -> build/lib/mmtbx/pair_interaction creating build/lib/mmtbx/ias copying mmtbx/ias/tst_ias.py -> build/lib/mmtbx/ias copying mmtbx/ias/__init__.py -> build/lib/mmtbx/ias creating build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/base_qm_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/reference.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/ramachandran.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/external.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/geo_file_parsing.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/mopac_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/c_beta.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_ramachandran.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_interface.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qm_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/__init__.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qi_utils.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/afitt.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/orca_manager.py -> build/lib/mmtbx/geometry_restraints creating build/lib/mmtbx/disorder copying mmtbx/disorder/backbone.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst_backbone.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/analyze_model.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/__init__.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst_analyze_model.py -> build/lib/mmtbx/disorder creating build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/check_cdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/sf4_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/altloc_weighting.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/LinkedResidues.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/testing_utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_setup.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_base_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hpdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/__init__.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_hpdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/nucleotides.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/histidines.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rotamers.py -> build/lib/mmtbx/conformation_dependent_library creating build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_monitor.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_weight.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_water.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_rigid_body.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_small_molecule.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residues.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_his.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/weight.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_water.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/rigid_body.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/individual_sites.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/__init__.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/explode_and_refine.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residue.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/utils.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/adp.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/occupancy.py -> build/lib/mmtbx/refinement/real_space creating build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/__init__.py -> build/lib/mmtbx/refinement/ensemble_refinement creating build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_3.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_suitename.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_02.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev_02.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_arguments.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_4.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_chiral_validation.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_experimental.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_omegalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_symmetry_SS.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_model_properties.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_01.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze_rare.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rna_validate.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_1.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_keep_hydrogens.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/__init__.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_5.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rotalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_find_region_max_value.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/run_restraints.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore_2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_restraints.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_waters.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam_2.py -> build/lib/mmtbx/validation/regression creating build/lib/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/convert_from_text.py -> build/lib/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/__init__.py -> build/lib/mmtbx/validation/ramachandran creating build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/mp_geo.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/percentile_clashscore.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/kinemage_templates.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/probescore_ligand.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/percentile_mpscore.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/table_from_json.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/__init__.py -> build/lib/mmtbx/validation/molprobity creating build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_symmetry.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ncs.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_merge.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_2.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_pairs_within.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_dedeuterate.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ramachandran.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_utils_merge_models.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_mtrix.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/__init__.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/lib/mmtbx/regression/model creating build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_utils.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/__init__.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_restraints.py -> build/lib/mmtbx/regression/ncs creating build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_utils.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_get_t_scheme.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_analysis.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_as_xyz.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/__init__.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/lib/mmtbx/regression/tls creating build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/tst_00.py -> build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/lifi.py -> build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/__init__.py -> build/lib/mmtbx/building/ligands creating build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/starting_conformations.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/ccd.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/__init__.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/utils.py -> build/lib/mmtbx/building/loop_closure creating build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/dump_sites.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier_01.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/__init__.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/utils.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier_02.py -> build/lib/mmtbx/ions/svm creating build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_ga.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_masks.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_util.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_input.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_mtz.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_optimize.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/__init__.py -> build/lib/mmtbx/sisa/optimize creating build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_1.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_2.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_3.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/ss_idealization.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_io.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/__init__.py -> build/lib/mmtbx/secondary_structure/build creating build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints creating build/lib/xcif/regression copying xcif/regression/tst_non_strict_mode.py -> build/lib/xcif/regression copying xcif/regression/tst_api_compat.py -> build/lib/xcif/regression copying xcif/regression/tst_iotbx_cif_reader_engine.py -> build/lib/xcif/regression copying xcif/regression/tst_parse_verify.py -> build/lib/xcif/regression copying xcif/regression/tst_quoted_string_delimiter.py -> build/lib/xcif/regression copying xcif/regression/tst_utf8.py -> build/lib/xcif/regression copying xcif/regression/tst_example_tokenize.py -> build/lib/xcif/regression copying xcif/regression/tst_roundtrip.py -> build/lib/xcif/regression copying xcif/regression/tst_iotbx_cif_reader_parity.py -> build/lib/xcif/regression copying xcif/regression/tst_semicolon_field_strict.py -> build/lib/xcif/regression copying xcif/regression/tst_gil_release.py -> build/lib/xcif/regression copying xcif/regression/tst_string_interning.py -> build/lib/xcif/regression copying xcif/regression/__init__.py -> build/lib/xcif/regression copying xcif/regression/tst_pdb_coordinates.py -> build/lib/xcif/regression copying xcif/regression/tst_bindings.py -> build/lib/xcif/regression copying xcif/regression/tst_pdb_sf.py -> build/lib/xcif/regression copying xcif/regression/tst_example_parse.py -> build/lib/xcif/regression copying xcif/regression/tst_memory.py -> build/lib/xcif/regression creating build/lib/xcif/benchmarks copying xcif/benchmarks/run_benchmarks.py -> build/lib/xcif/benchmarks copying xcif/benchmarks/__init__.py -> build/lib/xcif/benchmarks creating build/lib/fable/command_line copying fable/command_line/split.py -> build/lib/fable/command_line copying fable/command_line/show_calls.py -> build/lib/fable/command_line copying fable/command_line/insert_write_at_start_of_each_procedure.py -> build/lib/fable/command_line copying fable/command_line/__init__.py -> build/lib/fable/command_line copying fable/command_line/fem_include_search_paths.py -> build/lib/fable/command_line copying fable/command_line/read.py -> build/lib/fable/command_line copying fable/command_line/cout.py -> build/lib/fable/command_line creating build/lib/smtbx/refinement copying smtbx/refinement/weighting_schemes.py -> build/lib/smtbx/refinement copying smtbx/refinement/least_squares.py -> build/lib/smtbx/refinement copying smtbx/refinement/__init__.py -> build/lib/smtbx/refinement creating build/lib/smtbx/masks copying smtbx/masks/__init__.py -> build/lib/smtbx/masks creating build/lib/smtbx/absolute_structure copying smtbx/absolute_structure/__init__.py -> build/lib/smtbx/absolute_structure creating build/lib/smtbx/command_line copying smtbx/command_line/absolute_structure.py -> build/lib/smtbx/command_line copying smtbx/command_line/anom_refine.py -> build/lib/smtbx/command_line copying smtbx/command_line/refine.py -> build/lib/smtbx/command_line copying smtbx/command_line/masks.py -> build/lib/smtbx/command_line copying smtbx/command_line/__init__.py -> build/lib/smtbx/command_line copying smtbx/command_line/benchmark_refinement.py -> build/lib/smtbx/command_line creating build/lib/smtbx/regression copying smtbx/regression/tst_commandline_anomrefine.py -> build/lib/smtbx/regression copying smtbx/regression/tst_commandline_refine.py -> build/lib/smtbx/regression copying smtbx/regression/__init__.py -> build/lib/smtbx/regression creating build/lib/smtbx/stl copying smtbx/stl/map.py -> build/lib/smtbx/stl copying smtbx/stl/__init__.py -> build/lib/smtbx/stl creating build/lib/smtbx/ab_initio copying smtbx/ab_initio/charge_flipping.py -> build/lib/smtbx/ab_initio copying smtbx/ab_initio/__init__.py -> build/lib/smtbx/ab_initio creating build/lib/smtbx/array_family copying smtbx/array_family/__init__.py -> build/lib/smtbx/array_family creating build/lib/smtbx/structure_factors copying smtbx/structure_factors/__init__.py -> build/lib/smtbx/structure_factors creating build/lib/smtbx/source_generators copying smtbx/source_generators/flex_fwd_h.py -> build/lib/smtbx/source_generators copying smtbx/source_generators/__init__.py -> build/lib/smtbx/source_generators creating build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/site.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/rigid.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/fpfdp.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/all.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/__init__.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/adp.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/occupancy.py -> build/lib/smtbx/refinement/constraints creating build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/origin_fixing_restraints.py -> build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/__init__.py -> build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/adp_restraints.py -> build/lib/smtbx/refinement/restraints creating build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/hydrogens.py -> build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/all.py -> build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/__init__.py -> build/lib/smtbx/refinement/constraints/geometrical creating build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_occupancies.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_disorder.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_same_group.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_rigid.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/__init__.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_direction.py -> build/lib/smtbx/refinement/constraints/tests creating build/lib/smtbx/regression/test_data copying smtbx/regression/test_data/__init__.py -> build/lib/smtbx/regression/test_data creating build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_charge_flipping.py -> build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/__init__.py -> build/lib/smtbx/ab_initio/tests creating build/lib/smtbx/structure_factors/direct copying smtbx/structure_factors/direct/__init__.py -> build/lib/smtbx/structure_factors/direct creating build/lib/wxtbx/reports copying wxtbx/reports/pdb_symmetry.py -> build/lib/wxtbx/reports copying wxtbx/reports/blast.py -> build/lib/wxtbx/reports copying wxtbx/reports/__init__.py -> build/lib/wxtbx/reports creating build/lib/wxtbx/command_line copying wxtbx/command_line/plan_sad_experiment.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/loggraph.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/pdb_editor.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/inspect_r_free_flags.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/plot_anomalous_scattering.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/xtriage.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/anomalous_differences_histogram.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/b_plot.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/wxpython.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/show_file_info.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/__init__.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/pdb_statistics.py -> build/lib/wxtbx/command_line creating build/lib/wxtbx/plots copying wxtbx/plots/molprobity.py -> build/lib/wxtbx/plots copying wxtbx/plots/emringer.py -> build/lib/wxtbx/plots copying wxtbx/plots/__init__.py -> build/lib/wxtbx/plots creating build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/choice_multi.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/boolctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/tribool.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/tree.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/choice.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/strctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/floats.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/misc_ctrls.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/floatctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/symop.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/strings.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/numbers.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/space_group.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/__init__.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/ints.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/path.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/array_label.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/text_base.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/intctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/unit_cell.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/simple_dialogs.py -> build/lib/wxtbx/phil_controls creating build/lib/cctbx/xray copying cctbx/xray/scatterer.py -> build/lib/cctbx/xray copying cctbx/xray/target_functors.py -> build/lib/cctbx/xray copying cctbx/xray/minimization.py -> build/lib/cctbx/xray copying cctbx/xray/structure.py -> build/lib/cctbx/xray copying cctbx/xray/ext.py -> build/lib/cctbx/xray copying cctbx/xray/weighting_schemes.py -> build/lib/cctbx/xray copying cctbx/xray/observation_types.py -> build/lib/cctbx/xray copying cctbx/xray/__init__.py -> build/lib/cctbx/xray creating build/lib/cctbx/masks copying cctbx/masks/__init__.py -> build/lib/cctbx/masks creating build/lib/cctbx/command_line copying cctbx/command_line/structure_factor_timings.py -> build/lib/cctbx/command_line copying cctbx/command_line/subgroups.py -> build/lib/cctbx/command_line copying cctbx/command_line/samosa_scale.py -> build/lib/cctbx/command_line copying cctbx/command_line/space_group_info.py -> build/lib/cctbx/command_line copying cctbx/command_line/cod_select_and_pickle.py -> build/lib/cctbx/command_line copying cctbx/command_line/cctbx_test_nightly.py -> build/lib/cctbx/command_line copying cctbx/command_line/brehm_diederichs.py -> build/lib/cctbx/command_line copying cctbx/command_line/samosa_join.py -> build/lib/cctbx/command_line copying cctbx/command_line/euclidean_model_matching.py -> build/lib/cctbx/command_line copying cctbx/command_line/precession_view.py -> build/lib/cctbx/command_line copying cctbx/command_line/version.py -> build/lib/cctbx/command_line copying cctbx/command_line/qscore.py -> build/lib/cctbx/command_line copying cctbx/command_line/segment_and_split_map.py -> build/lib/cctbx/command_line copying cctbx/command_line/wavelength_units.py -> build/lib/cctbx/command_line copying cctbx/command_line/__init__.py -> build/lib/cctbx/command_line copying cctbx/command_line/auto_sharpen.py -> build/lib/cctbx/command_line copying cctbx/command_line/find_reticular_twin_laws.py -> build/lib/cctbx/command_line copying cctbx/command_line/diffuse.py -> build/lib/cctbx/command_line copying cctbx/command_line/eltbx.show_fp_fdp.py -> build/lib/cctbx/command_line copying cctbx/command_line/form_factor_query.py -> build/lib/cctbx/command_line creating build/lib/cctbx/sgtbx copying cctbx/sgtbx/sys_abs_equiv.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/sub_lattice_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/plane_groups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/reticular_pg_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/subgroups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/harker.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/cosets.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/rational_matrices_point_groups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/show_cosets.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/bravais_types.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/lattice_symmetry.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/literal_description.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/__init__.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/reticular_twin_laws.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/pointgroup_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/symbol_confidence.py -> build/lib/cctbx/sgtbx creating build/lib/cctbx/covariance copying cctbx/covariance/__init__.py -> build/lib/cctbx/covariance creating build/lib/cctbx/geometry copying cctbx/geometry/__init__.py -> build/lib/cctbx/geometry creating build/lib/cctbx/maptbx copying cctbx/maptbx/refine_scales_errors.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_qscore.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/real_space_refinement_simple.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/resolution_from_map_and_model.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/box.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_mask.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_asymmetric_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_interpolation_2.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_real_space_refinement_simple.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/minimization.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/fsc_curve.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_docking.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_target_and_gradients.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_refinement.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/qscore.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_atom_curves.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/segment_and_split_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_ccp.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/mask.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/__init__.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_bcr.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/auto_sharpen.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/refine_sharpening.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/mem.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/map_symmetry.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_interpolation.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_loft.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_peak_volume_estimate.py -> build/lib/cctbx/maptbx creating build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal_asu_clusters.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_derivatives.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_site_constraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_krivy_gruber.py -> build/lib/cctbx/regression copying cctbx/regression/tst_french_wilson.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_minimization.py -> build/lib/cctbx/regression copying cctbx/regression/tst_wavelength_units.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_merge_equivalents.py -> build/lib/cctbx/regression copying cctbx/regression/tst_prepare_map_for_docking.py -> build/lib/cctbx/regression copying cctbx/regression/tst_show_cosets.py -> build/lib/cctbx/regression copying cctbx/regression/tst_web_change_basis.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_minimization_failure.py -> build/lib/cctbx/regression copying cctbx/regression/tst_create_models_or_maps.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_double_step_filtration.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_constraints_cartesian.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_fast_gradients.py -> build/lib/cctbx/regression copying cctbx/regression/tst_f_model.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_constraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_pair_asu_table.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_target_functors.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_modifications_rm.py -> build/lib/cctbx/regression copying cctbx/regression/tst_coordination_sequences.py -> build/lib/cctbx/regression copying cctbx/regression/tst_expand_to_p1.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal.py -> build/lib/cctbx/regression copying cctbx/regression/tst_mem_2.py -> build/lib/cctbx/regression copying cctbx/regression/tst_twin_target.py -> build/lib/cctbx/regression copying cctbx/regression/tst_statistics_graphs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sf_low_res_accuracy.py -> build/lib/cctbx/regression copying cctbx/regression/tst_find_best_cell.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_structure_factors.py -> build/lib/cctbx/regression copying cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_data_manipulation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_subgroups.py -> build/lib/cctbx/regression copying cctbx/regression/tst_reflection_statistics.py -> build/lib/cctbx/regression copying cctbx/regression/tst_connectivity_allsym.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sphericity.py -> build/lib/cctbx/regression copying cctbx/regression/tst_connectivity.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sampled_model_density.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints_2.py -> build/lib/cctbx/regression copying cctbx/regression/tst_amplitude_normalisation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_mask.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_statistics.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/lib/cctbx/regression copying cctbx/regression/tst_map_is_periodic.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_harker.py -> build/lib/cctbx/regression copying cctbx/regression/tst_diffuse.py -> build/lib/cctbx/regression copying cctbx/regression/tst_wilson_plot.py -> build/lib/cctbx/regression copying cctbx/regression/tst_pointgroup_tools.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal_close_packing.py -> build/lib/cctbx/regression copying cctbx/regression/tst_weighting_schemes.py -> build/lib/cctbx/regression copying cctbx/regression/tst_loc_res.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_pickling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_r_free_utils.py -> build/lib/cctbx/regression copying cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_modifications.py -> build/lib/cctbx/regression copying cctbx/regression/tst_mem.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_denominators.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fast_nv1995.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_aniso_restraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_math_module.py -> build/lib/cctbx/regression copying cctbx/regression/tst_direct_space_asu.py -> build/lib/cctbx/regression copying cctbx/regression/__init__.py -> build/lib/cctbx/regression copying cctbx/regression/tst_triplet_generator.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_lookup_utils.py -> build/lib/cctbx/regression copying cctbx/regression/tst_reciprocal_space_asu.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fcalc_fft_stability.py -> build/lib/cctbx/regression copying cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_box.py -> build/lib/cctbx/regression copying cctbx/regression/tst_emma.py -> build/lib/cctbx/regression copying cctbx/regression/tst_niggli_reduction_cpp.py -> build/lib/cctbx/regression copying cctbx/regression/tst_direct_scaling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/lib/cctbx/regression copying cctbx/regression/tst_refine_xray_curvs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_change_basis.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_fft_map.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grouped_data.py -> build/lib/cctbx/regression creating build/lib/cctbx/web copying cctbx/web/dispatcher.py -> build/lib/cctbx/web copying cctbx/web/change_setting.py -> build/lib/cctbx/web copying cctbx/web/iotbx_cif_validate.py -> build/lib/cctbx/web copying cctbx/web/frac_cart.py -> build/lib/cctbx/web copying cctbx/web/explore_symmetry.py -> build/lib/cctbx/web copying cctbx/web/libtbx_help.py -> build/lib/cctbx/web copying cctbx/web/change_hand.py -> build/lib/cctbx/web copying cctbx/web/browse_settings.py -> build/lib/cctbx/web copying cctbx/web/shelx.py -> build/lib/cctbx/web copying cctbx/web/structure_factors_pdb.py -> build/lib/cctbx/web copying cctbx/web/phase_o_phrenia.py -> build/lib/cctbx/web copying cctbx/web/emma.py -> build/lib/cctbx/web copying cctbx/web/multiple_cell.py -> build/lib/cctbx/web copying cctbx/web/lattice_symmetry.py -> build/lib/cctbx/web copying cctbx/web/all_axes.py -> build/lib/cctbx/web copying cctbx/web/wyckoff.py -> build/lib/cctbx/web copying cctbx/web/cgi_utils.py -> build/lib/cctbx/web copying cctbx/web/replay.py -> build/lib/cctbx/web copying cctbx/web/structure_factors.py -> build/lib/cctbx/web copying cctbx/web/__init__.py -> build/lib/cctbx/web copying cctbx/web/io_utils.py -> build/lib/cctbx/web copying cctbx/web/change_basis.py -> build/lib/cctbx/web creating build/lib/cctbx/development copying cctbx/development/debug_utils.py -> build/lib/cctbx/development copying cctbx/development/run_shelx.py -> build/lib/cctbx/development copying cctbx/development/approx_amplitude_vs_resolution.py -> build/lib/cctbx/development copying cctbx/development/make_cns_input.py -> build/lib/cctbx/development copying cctbx/development/tst_cns_epsilon.py -> build/lib/cctbx/development copying cctbx/development/make_settings.py -> build/lib/cctbx/development copying cctbx/development/fmt_utils.py -> build/lib/cctbx/development copying cctbx/development/github.py -> build/lib/cctbx/development copying cctbx/development/electron_density_sampling.py -> build/lib/cctbx/development copying cctbx/development/create_models_or_maps.py -> build/lib/cctbx/development copying cctbx/development/cns_density_modification.py -> build/lib/cctbx/development copying cctbx/development/random_structure.py -> build/lib/cctbx/development copying cctbx/development/tst_cns_hl.py -> build/lib/cctbx/development copying cctbx/development/direct_or_fft.py -> build/lib/cctbx/development copying cctbx/development/run_shelx76.py -> build/lib/cctbx/development copying cctbx/development/__init__.py -> build/lib/cctbx/development copying cctbx/development/space_group_option_parser.py -> build/lib/cctbx/development copying cctbx/development/structure_factor_utils.py -> build/lib/cctbx/development creating build/lib/cctbx/macro_mol copying cctbx/macro_mol/__init__.py -> build/lib/cctbx/macro_mol copying cctbx/macro_mol/rotation_parameters.py -> build/lib/cctbx/macro_mol creating build/lib/cctbx/omz copying cctbx/omz/eval_iso_vs_refined.py -> build/lib/cctbx/omz copying cctbx/omz/tst_bfgs.py -> build/lib/cctbx/omz copying cctbx/omz/cod_refine.py -> build/lib/cctbx/omz copying cctbx/omz/cod_select_and_pickle.py -> build/lib/cctbx/omz copying cctbx/omz/dev.py -> build/lib/cctbx/omz copying cctbx/omz/bfgs.py -> build/lib/cctbx/omz copying cctbx/omz/pdb_dev.py -> build/lib/cctbx/omz copying cctbx/omz/tst_dev.py -> build/lib/cctbx/omz copying cctbx/omz/__init__.py -> build/lib/cctbx/omz copying cctbx/omz/tardy_adaptor.py -> build/lib/cctbx/omz copying cctbx/omz/cif_refine.py -> build/lib/cctbx/omz creating build/lib/cctbx/examples copying cctbx/examples/space_group_matrices.py -> build/lib/cctbx/examples copying cctbx/examples/g_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/site_symmetry_constraints.py -> build/lib/cctbx/examples copying cctbx/examples/list_non_principal_continuous_shifts.py -> build/lib/cctbx/examples copying cctbx/examples/tst_phase_o_phrenia.py -> build/lib/cctbx/examples copying cctbx/examples/adp_symmetry_constraints.py -> build/lib/cctbx/examples copying cctbx/examples/unit_cell_minimizers.py -> build/lib/cctbx/examples copying cctbx/examples/hirshfeld_test.py -> build/lib/cctbx/examples copying cctbx/examples/sub_group_graph.py -> build/lib/cctbx/examples copying cctbx/examples/random_puckers.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_4.py -> build/lib/cctbx/examples copying cctbx/examples/fft_map_electron_density_around_atom.py -> build/lib/cctbx/examples copying cctbx/examples/miller_transform.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_4.py -> build/lib/cctbx/examples copying cctbx/examples/view_fft_map.py -> build/lib/cctbx/examples copying cctbx/examples/cr2o3_consistency_checks.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_3.py -> build/lib/cctbx/examples copying cctbx/examples/neutron_structure_factors.py -> build/lib/cctbx/examples copying cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/f_model_example.py -> build/lib/cctbx/examples copying cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/lib/cctbx/examples copying cctbx/examples/miller_common_sets.py -> build/lib/cctbx/examples copying cctbx/examples/change_hand_p31.py -> build/lib/cctbx/examples copying cctbx/examples/cr2o3_primitive_cell.py -> build/lib/cctbx/examples copying cctbx/examples/ccp4_map.py -> build/lib/cctbx/examples copying cctbx/examples/site_symmetry_table.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_3.py -> build/lib/cctbx/examples copying cctbx/examples/g_exp_i_partial_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/lebedev_2005_perturbation.py -> build/lib/cctbx/examples copying cctbx/examples/unit_cell_refinement.py -> build/lib/cctbx/examples copying cctbx/examples/analyze_adp.py -> build/lib/cctbx/examples copying cctbx/examples/tst_space_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/random_f_calc.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_2.py -> build/lib/cctbx/examples copying cctbx/examples/phase_o_phrenia.py -> build/lib/cctbx/examples copying cctbx/examples/find_distances_using_cpp_objects.py -> build/lib/cctbx/examples copying cctbx/examples/exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/symops_530.py -> build/lib/cctbx/examples copying cctbx/examples/all_axes.py -> build/lib/cctbx/examples copying cctbx/examples/convert_ccp4_symop_lib.py -> build/lib/cctbx/examples copying cctbx/examples/map_skewness.py -> build/lib/cctbx/examples copying cctbx/examples/reduced_cell_two_folds.py -> build/lib/cctbx/examples copying cctbx/examples/location_part.py -> build/lib/cctbx/examples copying cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/lib/cctbx/examples copying cctbx/examples/quartz_structure.py -> build/lib/cctbx/examples copying cctbx/examples/space_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/__init__.py -> build/lib/cctbx/examples copying cctbx/examples/steve_collins.py -> build/lib/cctbx/examples copying cctbx/examples/maximum_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/lib/cctbx/examples copying cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_2.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/getting_started.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives.py -> build/lib/cctbx/examples creating build/lib/cctbx/eltbx copying cctbx/eltbx/attenuation_coefficient.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/e_scattering.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/henke.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/van_der_waals_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/distance_based_connectivity.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/read_custom_scattering_dict.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/chemical_elements.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/fp_fdp.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/sasaki.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/icsd_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/wavelengths.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/gaussian_fit.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/__init__.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/tiny_pse.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/covalent_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/neutron.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/formula.py -> build/lib/cctbx/eltbx creating build/lib/cctbx/neutron copying cctbx/neutron/__init__.py -> build/lib/cctbx/neutron creating build/lib/cctbx/miller copying cctbx/miller/tst_reindexing.py -> build/lib/cctbx/miller copying cctbx/miller/reindexing.py -> build/lib/cctbx/miller copying cctbx/miller/tst_map_to_asu_isym.py -> build/lib/cctbx/miller copying cctbx/miller/__init__.py -> build/lib/cctbx/miller copying cctbx/miller/display.py -> build/lib/cctbx/miller creating build/lib/cctbx/crystal copying cctbx/crystal/tst_ext.py -> build/lib/cctbx/crystal copying cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/lib/cctbx/crystal copying cctbx/crystal/direct_space_asu.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_distance_based_connectivity.py -> build/lib/cctbx/crystal copying cctbx/crystal/distance_based_connectivity.py -> build/lib/cctbx/crystal copying cctbx/crystal/super_cell.py -> build/lib/cctbx/crystal copying cctbx/crystal/coordination_sequences.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_super_cell.py -> build/lib/cctbx/crystal copying cctbx/crystal/close_packing.py -> build/lib/cctbx/crystal copying cctbx/crystal/__init__.py -> build/lib/cctbx/crystal copying cctbx/crystal/reindex.py -> build/lib/cctbx/crystal copying cctbx/crystal/find_best_cell.py -> build/lib/cctbx/crystal creating build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/tst_ext.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/energies.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/flags.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/__init__.py -> build/lib/cctbx/adp_restraints creating build/lib/cctbx/array_family copying cctbx/array_family/flex.py -> build/lib/cctbx/array_family copying cctbx/array_family/__init__.py -> build/lib/cctbx/array_family creating build/lib/cctbx/source_generators copying cctbx/source_generators/flex_fwd_h.py -> build/lib/cctbx/source_generators copying cctbx/source_generators/__init__.py -> build/lib/cctbx/source_generators creating build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/lbfgs.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_ext.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/manager.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/linking_class.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/standard_cif_links.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/auto_linking_types.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_motif.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/base_geometry.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/energies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/flags.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_proxy_registry.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_angle_derivs.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/__init__.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/distance_least_squares.py -> build/lib/cctbx/geometry_restraints creating build/lib/cctbx/uctbx copying cctbx/uctbx/reduction_base.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/krivy_gruber_1976.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/gruber_1973_table_1.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/gruber_1973.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/__init__.py -> build/lib/cctbx/uctbx creating build/lib/cctbx/merging copying cctbx/merging/brehm_diederichs.py -> build/lib/cctbx/merging copying cctbx/merging/__init__.py -> build/lib/cctbx/merging creating build/lib/cctbx/xray/targets copying cctbx/xray/targets/r1.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/tst_r1.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/__init__.py -> build/lib/cctbx/xray/targets creating build/lib/cctbx/xray/observations copying cctbx/xray/observations/tst_observations.py -> build/lib/cctbx/xray/observations copying cctbx/xray/observations/__init__.py -> build/lib/cctbx/xray/observations creating build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/manager.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradient_flags.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_fft.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_base.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/__init__.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/algorithm.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/global_counters.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_direct.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/misc.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_fft.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients.py -> build/lib/cctbx/xray/structure_factors creating build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/reference_table.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/__init__.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/lib/cctbx/sgtbx/direct_space_asu creating build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto creating build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_qmap_02.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_example.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_vrm.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/compute_tables.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/bcr.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/qmap.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_vrm2.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_two_atoms.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/__init__.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_adp_refine.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_table.py -> build/lib/cctbx/maptbx/bcr creating build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jvx.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_asu.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/guide_to_notation.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_index.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/__init__.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/web_links.py -> build/lib/cctbx/web/asu_gallery creating build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/__init__.py -> build/lib/cctbx/examples/structure_factor_calculus creating build/lib/cctbx/examples/merging copying cctbx/examples/merging/test1.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test_levenberg_sparse.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/data_utilities.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/sigma_correction.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/task4.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/show_results.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/tst_permutations.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test_cc_half.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/__init__.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/data_subset.py -> build/lib/cctbx/examples/merging creating build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/join.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/__init__.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/scale.py -> build/lib/cctbx/examples/merging/samosa creating build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/e_scattering_plots.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_approx.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_io.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_kissel.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/rez_rez_grant.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/combine_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_cross_validation.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_section61_io.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/__init__.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/format_gaussian_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/hydrogen_plots.py -> build/lib/cctbx/eltbx/development creating build/lib/cctbx/eltbx/xray_scattering copying cctbx/eltbx/xray_scattering/__init__.py -> build/lib/cctbx/eltbx/xray_scattering creating build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/__init__.py -> build/lib/cctbx/source_generators/eltbx creating build/lib/cctbx/uctbx/determine_unit_cell copying cctbx/uctbx/determine_unit_cell/__init__.py -> build/lib/cctbx/uctbx/determine_unit_cell creating build/lib/iotbx/fullprof copying iotbx/fullprof/write_pcr.py -> build/lib/iotbx/fullprof copying iotbx/fullprof/read_pcr.py -> build/lib/iotbx/fullprof copying iotbx/fullprof/__init__.py -> build/lib/iotbx/fullprof creating build/lib/iotbx/cif copying iotbx/cif/cod_tools.py -> build/lib/iotbx/cif copying iotbx/cif/model.py -> build/lib/iotbx/cif copying iotbx/cif/restraints.py -> build/lib/iotbx/cif copying iotbx/cif/builders.py -> build/lib/iotbx/cif copying iotbx/cif/geometry.py -> build/lib/iotbx/cif copying iotbx/cif/citations.py -> build/lib/iotbx/cif copying iotbx/cif/__init__.py -> build/lib/iotbx/cif copying iotbx/cif/errors.py -> build/lib/iotbx/cif copying iotbx/cif/restraint_file_merge.py -> build/lib/iotbx/cif copying iotbx/cif/validation.py -> build/lib/iotbx/cif copying iotbx/cif/crystal_symmetry_from_cif.py -> build/lib/iotbx/cif creating build/lib/iotbx/mtz copying iotbx/mtz/tst_unmerged.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_ext.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_miller_dict.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_dano.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/lib/iotbx/mtz copying iotbx/mtz/extract_from_symmetry_lib.py -> build/lib/iotbx/mtz copying iotbx/mtz/__init__.py -> build/lib/iotbx/mtz copying iotbx/mtz/crystal_symmetry_from_mtz.py -> build/lib/iotbx/mtz creating build/lib/iotbx/dsn6 copying iotbx/dsn6/tst.py -> build/lib/iotbx/dsn6 copying iotbx/dsn6/__init__.py -> build/lib/iotbx/dsn6 creating build/lib/iotbx/scalepack copying iotbx/scalepack/merge.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/no_merge_original_index.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/space_group_dictionary.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/tst_merge.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/__init__.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/tst_no_merge_original_index.py -> build/lib/iotbx/scalepack creating build/lib/iotbx/command_line copying iotbx/command_line/crystal_symmetry_from_any.py -> build/lib/iotbx/command_line copying iotbx/command_line/show_distances.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/merging_statistics.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.sdb_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_accumulation.py -> build/lib/iotbx/command_line copying iotbx/command_line/sort_atoms.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.hierarchy.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_labels_diff.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.as_miller_arrays.py -> build/lib/iotbx/command_line copying iotbx/command_line/blast_pdb.py -> build/lib/iotbx/command_line copying iotbx/command_line/flip_symmetric_amino_acids.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.box_around_molecule.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_labels_comparison.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtz_as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.join_fragment_files.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.insert_scale_records.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtrix_reconstruction.py -> build/lib/iotbx/command_line copying iotbx/command_line/build_phil_cache.py -> build/lib/iotbx/command_line copying iotbx/command_line/get_pubmed_citation.py -> build/lib/iotbx/command_line copying iotbx/command_line/cbf_read.py -> build/lib/iotbx/command_line copying iotbx/command_line/show_systematic_absences.py -> build/lib/iotbx/command_line copying iotbx/command_line/unique_with_biomt.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_split_models.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_as_fasta.py -> build/lib/iotbx/command_line copying iotbx/command_line/dano_as_amplitudes.py -> build/lib/iotbx/command_line copying iotbx/command_line/csv_as_mtz.py -> build/lib/iotbx/command_line copying iotbx/command_line/export_scalepack_unmerged.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_show_connectivity.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif_as_pdb.py -> build/lib/iotbx/command_line copying iotbx/command_line/biomt_reconstruction.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_editor.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_cif_conversion.py -> build/lib/iotbx/command_line copying iotbx/command_line/emma.py -> build/lib/iotbx/command_line copying iotbx/command_line/dtrek.to_cns.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_statistics.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_get_citation.py -> build/lib/iotbx/command_line copying iotbx/command_line/explore_metric_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/lattice_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_add_conformations.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_as_cns.py -> build/lib/iotbx/command_line copying iotbx/command_line/french_wilson.py -> build/lib/iotbx/command_line copying iotbx/command_line/file_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.dump_as_python.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.b_factor_stats.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_completion_simple.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtz.dump.py -> build/lib/iotbx/command_line copying iotbx/command_line/simple_map_coefficients.py -> build/lib/iotbx/command_line copying iotbx/command_line/phil.py -> build/lib/iotbx/command_line copying iotbx/command_line/patterson_map.py -> build/lib/iotbx/command_line copying iotbx/command_line/poscar_as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/__init__.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/lib/iotbx/command_line copying iotbx/command_line/split_data_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.validate.py -> build/lib/iotbx/command_line copying iotbx/command_line/symmetry_search.py -> build/lib/iotbx/command_line copying iotbx/command_line/reindex.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_converter.py -> build/lib/iotbx/command_line copying iotbx/command_line/xplor.map.show_summary.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.reflection_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/distance_least_squares.py -> build/lib/iotbx/command_line copying iotbx/command_line/effective_resolution.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns_as_mtz.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.print_sequence.py -> build/lib/iotbx/command_line copying iotbx/command_line/detector_image_as_png.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_remediator.py -> build/lib/iotbx/command_line creating build/lib/iotbx/data_manager copying iotbx/data_manager/sequence.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/model.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/real_map.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/ncs_spec.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/common.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/miller_array.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/map_coefficients.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/restraint.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/phil.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/__init__.py -> build/lib/iotbx/data_manager creating build/lib/iotbx/regression copying iotbx/regression/tst_all_chain_ids.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager_wrapping.py -> build/lib/iotbx/regression copying iotbx/regression/tst_fetch.py -> build/lib/iotbx/regression copying iotbx/regression/tst_simple_parser.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_file_reader.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cli_parser.py -> build/lib/iotbx/regression copying iotbx/regression/tst_show_systematic_absences.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_link_records.py -> build/lib/iotbx/regression copying iotbx/regression/tst_miller_sort_asu.py -> build/lib/iotbx/regression copying iotbx/regression/tst_bioinformatics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_extract_xtal_data.py -> build/lib/iotbx/regression copying iotbx/regression/tst_poscar.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reindex.py -> build/lib/iotbx/regression copying iotbx/regression/tst_lattice_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cif_as_pdb_1atom.py -> build/lib/iotbx/regression copying iotbx/regression/tst_csv_utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_crystal_symmetry_from_any.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_restraints_merge.py -> build/lib/iotbx/regression copying iotbx/regression/tst_split_models.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_tools.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_input.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cif_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/lib/iotbx/regression copying iotbx/regression/tst_generate_n_char_string.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/lib/iotbx/regression copying iotbx/regression/tst_merging_statistics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_4.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_cif_inputs.py -> build/lib/iotbx/regression copying iotbx/regression/tst_xray_scale.py -> build/lib/iotbx/regression copying iotbx/regression/tst_simple_map_coefficients.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_statistics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_as_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_cif_cells.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_segids.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_as_fasta.py -> build/lib/iotbx/regression copying iotbx/regression/tst_export_scalepack_unmerged.py -> build/lib/iotbx/regression copying iotbx/regression/tst_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_multimodel.py -> build/lib/iotbx/regression copying iotbx/regression/tst_atom_selections_10k.py -> build/lib/iotbx/regression copying iotbx/regression/tst_sort_atoms.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_pdb_v3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/lib/iotbx/regression copying iotbx/regression/tst_add_conformations.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_id_str.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/lib/iotbx/regression copying iotbx/regression/tst_box_around_molecule.py -> build/lib/iotbx/regression copying iotbx/regression/tst_split_data_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_editor.py -> build/lib/iotbx/regression copying iotbx/regression/tst_phil.py -> build/lib/iotbx/regression copying iotbx/regression/tst_wildcard.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mrc_io.py -> build/lib/iotbx/regression copying iotbx/regression/tst_patterson.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_call_consistency.py -> build/lib/iotbx/regression copying iotbx/regression/tst_data_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_3.py -> build/lib/iotbx/regression copying iotbx/regression/__init__.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_4.py -> build/lib/iotbx/regression copying iotbx/regression/tst_group_rounding.py -> build/lib/iotbx/regression copying iotbx/regression/tst_examples.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_utils.py -> build/lib/iotbx/regression copying iotbx/regression/utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_phases.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_reader.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mtz_as_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_altlocs.py -> build/lib/iotbx/regression copying iotbx/regression/tst_data_plots.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_copy_select.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/lib/iotbx/regression copying iotbx/regression/tst_selected_hierarchy_flip.py -> build/lib/iotbx/regression creating build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif.py -> build/lib/iotbx/pdb copying iotbx/pdb/nucleic_acid_codes.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_atom_sort.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_ext.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/lib/iotbx/pdb copying iotbx/pdb/crystal_symmetry_from_pdb.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_selection_string.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/lib/iotbx/pdb copying iotbx/pdb/fetch.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/rcsb.py -> build/lib/iotbx/pdb copying iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_secondary_structure_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/amino_acid_codes.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_rna_dna_atom_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/atom_name_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/experiment_type.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_name_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/mmcif.py -> build/lib/iotbx/pdb copying iotbx/pdb/hybrid_36.py -> build/lib/iotbx/pdb copying iotbx/pdb/modified_aa_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/records.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_290_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/secondary_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/aa_utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/cryst1_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/web_service_api.py -> build/lib/iotbx/pdb copying iotbx/pdb/download.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/xray_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/rna_dna_detection.py -> build/lib/iotbx/pdb copying iotbx/pdb/misc_records_output.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_2_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/lib/iotbx/pdb copying iotbx/pdb/modified_rna_dna_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_tls.py -> build/lib/iotbx/pdb copying iotbx/pdb/atom_selection.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_3_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/__init__.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_selection.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/pdbe.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_secondary_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/pdb_v3_cif_conversion.py -> build/lib/iotbx/pdb copying iotbx/pdb/utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_pdb.py -> build/lib/iotbx/pdb copying iotbx/pdb/hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/lib/iotbx/pdb creating build/lib/iotbx/xds copying iotbx/xds/xds_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/gain_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/xds_inp.py -> build/lib/iotbx/xds copying iotbx/xds/xparm.py -> build/lib/iotbx/xds copying iotbx/xds/integrate_hkl.py -> build/lib/iotbx/xds copying iotbx/xds/crystal_symmetry_from_hkl.py -> build/lib/iotbx/xds copying iotbx/xds/spot_xds.py -> build/lib/iotbx/xds copying iotbx/xds/read_ascii.py -> build/lib/iotbx/xds copying iotbx/xds/geometry.py -> build/lib/iotbx/xds copying iotbx/xds/blank_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/__init__.py -> build/lib/iotbx/xds copying iotbx/xds/correction.py -> build/lib/iotbx/xds creating build/lib/iotbx/detectors copying iotbx/detectors/raxis_nonsquare.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_py_cbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_detectors.py -> build/lib/iotbx/detectors copying iotbx/detectors/generic_detector.py -> build/lib/iotbx/detectors copying iotbx/detectors/pilatus_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/edf.py -> build/lib/iotbx/detectors copying iotbx/detectors/cspad_detector_formats.py -> build/lib/iotbx/detectors copying iotbx/detectors/image_from_http_request.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxis.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxisbase.py -> build/lib/iotbx/detectors copying iotbx/detectors/bruker.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc.py -> build/lib/iotbx/detectors copying iotbx/detectors/npy.py -> build/lib/iotbx/detectors copying iotbx/detectors/active_area_filter.py -> build/lib/iotbx/detectors copying iotbx/detectors/url_support.py -> build/lib/iotbx/detectors copying iotbx/detectors/macscience.py -> build/lib/iotbx/detectors copying iotbx/detectors/test_raxis2.py -> build/lib/iotbx/detectors copying iotbx/detectors/detectorbase.py -> build/lib/iotbx/detectors copying iotbx/detectors/beam_center_convention.py -> build/lib/iotbx/detectors copying iotbx/detectors/noir.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_adsc.py -> build/lib/iotbx/detectors copying iotbx/detectors/mar.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_debug_write.py -> build/lib/iotbx/detectors copying iotbx/detectors/saturn.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc_module.py -> build/lib/iotbx/detectors copying iotbx/detectors/__init__.py -> build/lib/iotbx/detectors copying iotbx/detectors/eiger_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/eiger.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_cbf_comp_read_meth.py -> build/lib/iotbx/detectors copying iotbx/detectors/dtrek.py -> build/lib/iotbx/detectors copying iotbx/detectors/cbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/hamamatsu.py -> build/lib/iotbx/detectors copying iotbx/detectors/pilatus_slice.py -> build/lib/iotbx/detectors copying iotbx/detectors/marIP.py -> build/lib/iotbx/detectors copying iotbx/detectors/test_mar.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc_minicbf.py -> build/lib/iotbx/detectors creating build/lib/iotbx/PrettyPrint copying iotbx/PrettyPrint/tables.py -> build/lib/iotbx/PrettyPrint copying iotbx/PrettyPrint/__init__.py -> build/lib/iotbx/PrettyPrint creating build/lib/iotbx/kriber copying iotbx/kriber/strudat.py -> build/lib/iotbx/kriber copying iotbx/kriber/tst_strudat.py -> build/lib/iotbx/kriber copying iotbx/kriber/__init__.py -> build/lib/iotbx/kriber creating build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/tst.py -> build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/__init__.py -> build/lib/iotbx/ccp4_map creating build/lib/iotbx/xplor copying iotbx/xplor/tst_xplormap.py -> build/lib/iotbx/xplor copying iotbx/xplor/ext.py -> build/lib/iotbx/xplor copying iotbx/xplor/map.py -> build/lib/iotbx/xplor copying iotbx/xplor/crystal_symmetry_from_map.py -> build/lib/iotbx/xplor copying iotbx/xplor/__init__.py -> build/lib/iotbx/xplor creating build/lib/iotbx/examples copying iotbx/examples/libtbx_phil_examples.py -> build/lib/iotbx/examples copying iotbx/examples/prepare_model_for_rsr.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_shake.py -> build/lib/iotbx/examples copying iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/lib/iotbx/examples copying iotbx/examples/direct_methods_light.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_split_chains.py -> build/lib/iotbx/examples copying iotbx/examples/pdbx_mmcif_tutorial.py -> build/lib/iotbx/examples copying iotbx/examples/tst_mtz_free_flipper.py -> build/lib/iotbx/examples copying iotbx/examples/mtz_convert_free_to_work.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/lib/iotbx/examples copying iotbx/examples/mtz_free_flipper.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_symmetry_copies.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_hierarchy.py -> build/lib/iotbx/examples copying iotbx/examples/__init__.py -> build/lib/iotbx/examples copying iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_to_map_simple.py -> build/lib/iotbx/examples creating build/lib/iotbx/dtrek copying iotbx/dtrek/reflnlist_reader.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/__init__.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/crystal_symmetry_from_ref.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/dtrek_symmetry_dict.py -> build/lib/iotbx/dtrek creating build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/pdb_info.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/homologues.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/xmlbuild.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/ncbi_blast_xml.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/structure.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/pubmed.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/alignment_as_hsearch.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/local_blast.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/__init__.py -> build/lib/iotbx/bioinformatics creating build/lib/iotbx/ncs copying iotbx/ncs/__init__.py -> build/lib/iotbx/ncs creating build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_from_inp.py -> build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_from_sdb.py -> build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_utils.py -> build/lib/iotbx/cns copying iotbx/cns/sdb_reader.py -> build/lib/iotbx/cns copying iotbx/cns/sdb_writer.py -> build/lib/iotbx/cns copying iotbx/cns/index_fobs_sigma_reader.py -> build/lib/iotbx/cns copying iotbx/cns/miller_array.py -> build/lib/iotbx/cns copying iotbx/cns/reflection_reader.py -> build/lib/iotbx/cns copying iotbx/cns/tst_cns.py -> build/lib/iotbx/cns copying iotbx/cns/space_group_symbols.py -> build/lib/iotbx/cns copying iotbx/cns/xray_structure.py -> build/lib/iotbx/cns copying iotbx/cns/__init__.py -> build/lib/iotbx/cns copying iotbx/cns/pdb_remarks.py -> build/lib/iotbx/cns creating build/lib/iotbx/programs copying iotbx/programs/unique_with_biomt.py -> build/lib/iotbx/programs copying iotbx/programs/box_around_molecule.py -> build/lib/iotbx/programs copying iotbx/programs/__init__.py -> build/lib/iotbx/programs copying iotbx/programs/split_data_cif.py -> build/lib/iotbx/programs creating build/lib/iotbx/solve copying iotbx/solve/crystal_symmetry_from_inp.py -> build/lib/iotbx/solve copying iotbx/solve/fpfm_reader.py -> build/lib/iotbx/solve copying iotbx/solve/__init__.py -> build/lib/iotbx/solve creating build/lib/iotbx/shelx copying iotbx/shelx/parsers.py -> build/lib/iotbx/shelx copying iotbx/shelx/hklf.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_lex_parse_build.py -> build/lib/iotbx/shelx copying iotbx/shelx/tokens.py -> build/lib/iotbx/shelx copying iotbx/shelx/fcf.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_hklf.py -> build/lib/iotbx/shelx copying iotbx/shelx/writer.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_fvar_encoding.py -> build/lib/iotbx/shelx copying iotbx/shelx/lexer.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_writer.py -> build/lib/iotbx/shelx copying iotbx/shelx/write_ins.py -> build/lib/iotbx/shelx copying iotbx/shelx/__init__.py -> build/lib/iotbx/shelx copying iotbx/shelx/errors.py -> build/lib/iotbx/shelx copying iotbx/shelx/crystal_symmetry_from_ins.py -> build/lib/iotbx/shelx copying iotbx/shelx/fvar_encoding.py -> build/lib/iotbx/shelx creating build/lib/iotbx/mrcfile copying iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/lib/iotbx/mrcfile copying iotbx/mrcfile/__init__.py -> build/lib/iotbx/mrcfile creating build/lib/iotbx/gui_tools copying iotbx/gui_tools/tst.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/cif_conversions.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/__init__.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/import_data_and_flags.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/models.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/reflections.py -> build/lib/iotbx/gui_tools creating build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_without_validation.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_input.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_user_selections.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/__init__.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/lib/iotbx/regression/ncs creating build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/remediator.py -> build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/__init__.py -> build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/tst_remediator.py -> build/lib/iotbx/pdb/remediation creating build/lib/iotbx/detectors/context copying iotbx/detectors/context/spot_xy_convention.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/config_detector.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/camera_convention.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/endstation.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/endstation_max_iv_trial.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/__init__.py -> build/lib/iotbx/detectors/context creating build/lib/iotbx/detectors/util copying iotbx/detectors/util/filters.py -> build/lib/iotbx/detectors/util copying iotbx/detectors/util/__init__.py -> build/lib/iotbx/detectors/util creating build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/tst.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/lib/iotbx/examples/pdb_truncate_to_ala creating build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/self_match.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/sample.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx/annlib_adaptbx creating build/lib/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/generate_all.py -> build/lib/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/__init__.py -> build/lib/annlib_adaptbx/source_generators creating build/lib/spotfinder/applications copying spotfinder/applications/practical_heuristics.py -> build/lib/spotfinder/applications copying spotfinder/applications/stats_distl.py -> build/lib/spotfinder/applications copying spotfinder/applications/image_viewer.py -> build/lib/spotfinder/applications copying spotfinder/applications/__init__.py -> build/lib/spotfinder/applications copying spotfinder/applications/wrappers.py -> build/lib/spotfinder/applications copying spotfinder/applications/signal_strength.py -> build/lib/spotfinder/applications creating build/lib/spotfinder/servers copying spotfinder/servers/specific_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/general_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/thin_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/spotfinder_server_read_file.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache.py -> build/lib/spotfinder/servers copying spotfinder/servers/bcsb_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/multipart_encoder.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_bcsb.py -> build/lib/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/lib/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_read_file.py -> build/lib/spotfinder/servers copying spotfinder/servers/pilatus_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/adsc_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/spotfinder_server_client_push.py -> build/lib/spotfinder/servers copying spotfinder/servers/__init__.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_utils.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_dials.py -> build/lib/spotfinder/servers creating build/lib/spotfinder/command_line copying spotfinder/command_line/thin_client.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/image_viewer.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/find_active_area.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/__init__.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/sweep_strength.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/signal_strength.py -> build/lib/spotfinder/command_line creating build/lib/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/lib/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/__init__.py -> build/lib/spotfinder/dxtbx_toolbox creating build/lib/spotfinder/core_toolbox copying spotfinder/core_toolbox/close_spots_detail.py -> build/lib/spotfinder/core_toolbox copying spotfinder/core_toolbox/__init__.py -> build/lib/spotfinder/core_toolbox creating build/lib/spotfinder/diffraction copying spotfinder/diffraction/imagefiles.py -> build/lib/spotfinder/diffraction copying spotfinder/diffraction/geometry.py -> build/lib/spotfinder/diffraction copying spotfinder/diffraction/__init__.py -> build/lib/spotfinder/diffraction creating build/lib/spotfinder/math_support copying spotfinder/math_support/sphere_formulae.py -> build/lib/spotfinder/math_support copying spotfinder/math_support/__init__.py -> build/lib/spotfinder/math_support creating build/lib/spotfinder/array_family copying spotfinder/array_family/flex.py -> build/lib/spotfinder/array_family copying spotfinder/array_family/__init__.py -> build/lib/spotfinder/array_family creating build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice2.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/spotreporter.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/__init__.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/lib/spotfinder/applications/heuristic_tbx creating build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_run3.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_phil.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/correction_vector_plot.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/__init__.py -> build/lib/spotfinder/applications/xfel creating build/lib/rstbx/apps copying rstbx/apps/spot_markup.py -> build/lib/rstbx/apps copying rstbx/apps/dual_resolution_helpers.py -> build/lib/rstbx/apps copying rstbx/apps/__init__.py -> build/lib/rstbx/apps copying rstbx/apps/slip_helpers.py -> build/lib/rstbx/apps creating build/lib/rstbx/simulation copying rstbx/simulation/constants.py -> build/lib/rstbx/simulation copying rstbx/simulation/sim_pdf.py -> build/lib/rstbx/simulation copying rstbx/simulation/__init__.py -> build/lib/rstbx/simulation copying rstbx/simulation/tst_xfel1_simple.py -> build/lib/rstbx/simulation copying rstbx/simulation/sim_utils.py -> build/lib/rstbx/simulation creating build/lib/rstbx/phil copying rstbx/phil/scope.py -> build/lib/rstbx/phil copying rstbx/phil/phil_preferences.py -> build/lib/rstbx/phil copying rstbx/phil/__init__.py -> build/lib/rstbx/phil copying rstbx/phil/preferences.py -> build/lib/rstbx/phil creating build/lib/rstbx/outlier_spots copying rstbx/outlier_spots/fit_distribution.py -> build/lib/rstbx/outlier_spots copying rstbx/outlier_spots/__init__.py -> build/lib/rstbx/outlier_spots creating build/lib/rstbx/command_line copying rstbx/command_line/example_viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/index.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.explore_completeness.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.create.py -> build/lib/rstbx/command_line copying rstbx/command_line/slip_viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/__init__.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.solver.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.wx_display.py -> build/lib/rstbx/command_line creating build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/ring_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/pyslip.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/tile_generation.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/score_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/slip_viewer_image_factory.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/uc_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/__init__.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/slip_display.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/calibration_frame.py -> build/lib/rstbx/slip_viewer creating build/lib/rstbx/detectors copying rstbx/detectors/silicon.py -> build/lib/rstbx/detectors copying rstbx/detectors/__init__.py -> build/lib/rstbx/detectors creating build/lib/rstbx/symmetry copying rstbx/symmetry/sgtbx_adaptor.py -> build/lib/rstbx/symmetry copying rstbx/symmetry/__init__.py -> build/lib/rstbx/symmetry copying rstbx/symmetry/subgroup.py -> build/lib/rstbx/symmetry creating build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_validate.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2a.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions_idx.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/compare_mosflm_xds.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/__init__.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/ersatz_misset.py -> build/lib/rstbx/bpcx creating build/lib/rstbx/dps_core copying rstbx/dps_core/cell_assessment.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/tst_iotbx_converter.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/basis_choice.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/lepage.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/zuoreduction.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/constrainment.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/__init__.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/sampling.py -> build/lib/rstbx/dps_core creating build/lib/rstbx/indexing_api copying rstbx/indexing_api/outlier_procedure.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/lattice.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/nearest_neighbor.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/force_cell.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/basis_choice.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/tools.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/test_dps.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/outlier_detection.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/__init__.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/sampling.py -> build/lib/rstbx/indexing_api creating build/lib/rstbx/indexing copying rstbx/indexing/tst_auto_monoscan.py -> build/lib/rstbx/indexing copying rstbx/indexing/do_index.py -> build/lib/rstbx/indexing copying rstbx/indexing/__init__.py -> build/lib/rstbx/indexing copying rstbx/indexing/tst_dataset1.py -> build/lib/rstbx/indexing creating build/lib/rstbx/new_horizons copying rstbx/new_horizons/index.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/speckfinder.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/stats_index.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/spot_shape.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/pixel_spread.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/__init__.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/oscillation_shots.py -> build/lib/rstbx/new_horizons creating build/lib/rstbx/diffraction copying rstbx/diffraction/tst_ewald_sphere.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/tst_partial_derivatives.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/tst_predict.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/__init__.py -> build/lib/rstbx/diffraction creating build/lib/rstbx/simage copying rstbx/simage/run_spotfinder.py -> build/lib/rstbx/simage copying rstbx/simage/refine_uc_cr.py -> build/lib/rstbx/simage copying rstbx/simage/integrate_crude.py -> build/lib/rstbx/simage copying rstbx/simage/tst.py -> build/lib/rstbx/simage copying rstbx/simage/run_labelit_index.py -> build/lib/rstbx/simage copying rstbx/simage/explore_completeness.py -> build/lib/rstbx/simage copying rstbx/simage/create.py -> build/lib/rstbx/simage copying rstbx/simage/solver.py -> build/lib/rstbx/simage copying rstbx/simage/__init__.py -> build/lib/rstbx/simage copying rstbx/simage/wx_display.py -> build/lib/rstbx/simage creating build/lib/rstbx/viewer copying rstbx/viewer/results_base.py -> build/lib/rstbx/viewer copying rstbx/viewer/dataset.py -> build/lib/rstbx/viewer copying rstbx/viewer/processing.py -> build/lib/rstbx/viewer copying rstbx/viewer/tst.py -> build/lib/rstbx/viewer copying rstbx/viewer/drivers.py -> build/lib/rstbx/viewer copying rstbx/viewer/frame.py -> build/lib/rstbx/viewer copying rstbx/viewer/pixels3d.py -> build/lib/rstbx/viewer copying rstbx/viewer/calibration.py -> build/lib/rstbx/viewer copying rstbx/viewer/controls.py -> build/lib/rstbx/viewer copying rstbx/viewer/spotfinder_wrap.py -> build/lib/rstbx/viewer copying rstbx/viewer/indexing.py -> build/lib/rstbx/viewer copying rstbx/viewer/__init__.py -> build/lib/rstbx/viewer copying rstbx/viewer/integration.py -> build/lib/rstbx/viewer copying rstbx/viewer/display.py -> build/lib/rstbx/viewer copying rstbx/viewer/calibration_frame.py -> build/lib/rstbx/viewer copying rstbx/viewer/spotfinder_frame.py -> build/lib/rstbx/viewer creating build/lib/rstbx/array_family copying rstbx/array_family/flex.py -> build/lib/rstbx/array_family copying rstbx/array_family/__init__.py -> build/lib/rstbx/array_family creating build/lib/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_converter.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_helpers.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/__init__.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/tst_coordinate_frame_converter.py -> build/lib/rstbx/cftbx creating build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/tst_sublattice.py -> build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/__init__.py -> build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/change_basis.py -> build/lib/rstbx/sublattice_support creating build/lib/rstbx/dials_core copying rstbx/dials_core/integration_core.py -> build/lib/rstbx/dials_core copying rstbx/dials_core/__init__.py -> build/lib/rstbx/dials_core creating build/lib/rstbx/bandpass copying rstbx/bandpass/simulated_annealing.py -> build/lib/rstbx/bandpass copying rstbx/bandpass/__init__.py -> build/lib/rstbx/bandpass creating build/lib/rstbx/apps/stills copying rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/util.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/simple_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/__init__.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/stills_integration.py -> build/lib/rstbx/apps/stills creating build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/parameter_reduction.py -> build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/g_gradients.py -> build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/__init__.py -> build/lib/rstbx/symmetry/constraints creating build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/detector.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/instrument_specifics.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/__init__.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/tst_detector_model.py -> build/lib/rstbx/bpcx/detector_model creating build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/__init__.py -> build/lib/rstbx/diffraction/fastbragg creating build/lib/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/dump.py -> build/lib/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/__init__.py -> build/lib/cbflib_adaptbx/command_line creating build/lib/libtbx/phil copying libtbx/phil/interface.py -> build/lib/libtbx/phil copying libtbx/phil/tokenizer.py -> build/lib/libtbx/phil copying libtbx/phil/command_line.py -> build/lib/libtbx/phil copying libtbx/phil/tst.py -> build/lib/libtbx/phil copying libtbx/phil/tst_experimental.py -> build/lib/libtbx/phil copying libtbx/phil/experimental.py -> build/lib/libtbx/phil copying libtbx/phil/gui_objects.py -> build/lib/libtbx/phil copying libtbx/phil/parser.py -> build/lib/libtbx/phil copying libtbx/phil/tst_tokenizer.py -> build/lib/libtbx/phil copying libtbx/phil/__init__.py -> build/lib/libtbx/phil copying libtbx/phil/tst_interface.py -> build/lib/libtbx/phil creating build/lib/libtbx/command_line copying libtbx/command_line/show_module_dependencies.py -> build/lib/libtbx/command_line copying libtbx/command_line/start_binary_bundle.py -> build/lib/libtbx/command_line copying libtbx/command_line/env_run.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_env.py -> build/lib/libtbx/command_line copying libtbx/command_line/prime_factors_of.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_python_sys_executable.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_host_and_user.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_tests.py -> build/lib/libtbx/command_line copying libtbx/command_line/clear_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/make_sphinx_html.py -> build/lib/libtbx/command_line copying libtbx/command_line/sge_available_slots.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_not_show_diff.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_include_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_build_options.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_installer.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_dist_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/add_docstrings_with_ai.py -> build/lib/libtbx/command_line copying libtbx/command_line/printenv.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_but_no_repr.py -> build/lib/libtbx/command_line copying libtbx/command_line/line_count.py -> build/lib/libtbx/command_line copying libtbx/command_line/start_process.py -> build/lib/libtbx/command_line copying libtbx/command_line/extract_code_from_txt.py -> build/lib/libtbx/command_line copying libtbx/command_line/nequal.py -> build/lib/libtbx/command_line copying libtbx/command_line/import_all_python.py -> build/lib/libtbx/command_line copying libtbx/command_line/wait_for_file.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_commands.py -> build/lib/libtbx/command_line copying libtbx/command_line/remove_tree.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_files.py -> build/lib/libtbx/command_line copying libtbx/command_line/path_utility.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_numpy_version.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_unused_imports.py -> build/lib/libtbx/command_line copying libtbx/command_line/check_libcpp.py -> build/lib/libtbx/command_line copying libtbx/command_line/parallel_simple.py -> build/lib/libtbx/command_line copying libtbx/command_line/cctbx_chunk.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin_contains_strings.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_repository_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/scons.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_mac_app.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_source_files_sorted_by_size.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_full_command_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_files.py -> build/lib/libtbx/command_line copying libtbx/command_line/run_tests_parallel.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_windows_exe.py -> build/lib/libtbx/command_line copying libtbx/command_line/epydoc_run.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_number_of_processors.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_unzipsfx.py -> build/lib/libtbx/command_line copying libtbx/command_line/remote_processing.py -> build/lib/libtbx/command_line copying libtbx/command_line/sphinx_build.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_pdb_mmcif_problems.py -> build/lib/libtbx/command_line copying libtbx/command_line/import_all_ext.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_reserved_names.py -> build/lib/libtbx/command_line copying libtbx/command_line/raise_exception_for_testing.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_bin_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_untested.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_python_dependencies.py -> build/lib/libtbx/command_line copying libtbx/command_line/bundle_as_exe.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_selfx.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_pythonpath.py -> build/lib/libtbx/command_line copying libtbx/command_line/resource_monitor_plot.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_date_and_time.py -> build/lib/libtbx/command_line copying libtbx/command_line/make_dist.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_in_repositories.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_line_count.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_all_on_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/py_compile_all.py -> build/lib/libtbx/command_line copying libtbx/command_line/analyse_code_comments.py -> build/lib/libtbx/command_line copying libtbx/command_line/install_conda.py -> build/lib/libtbx/command_line copying libtbx/command_line/clean_clutter.py -> build/lib/libtbx/command_line copying libtbx/command_line/phil.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_under_build.py -> build/lib/libtbx/command_line copying libtbx/command_line/easy_qsub.py -> build/lib/libtbx/command_line copying libtbx/command_line/__init__.py -> build/lib/libtbx/command_line copying libtbx/command_line/bootstrap.py -> build/lib/libtbx/command_line copying libtbx/command_line/help.py -> build/lib/libtbx/command_line copying libtbx/command_line/ipython_shell_start.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_install_script_bat.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin_ends_with.py -> build/lib/libtbx/command_line copying libtbx/command_line/git_avoid_merges.py -> build/lib/libtbx/command_line copying libtbx/command_line/remove_unused_imports.py -> build/lib/libtbx/command_line copying libtbx/command_line/install.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_lib_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_old_style_classes.py -> build/lib/libtbx/command_line copying libtbx/command_line/reindent.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_clutter.py -> build/lib/libtbx/command_line copying libtbx/command_line/run_pickled_function.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_modules.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_build_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_unused_imports_crude.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_environ_usage.py -> build/lib/libtbx/command_line copying libtbx/command_line/sge_qstat_counts.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_variable_names.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin.py -> build/lib/libtbx/command_line copying libtbx/command_line/dtrace.py -> build/lib/libtbx/command_line copying libtbx/command_line/any2unix.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_numeric_version.py -> build/lib/libtbx/command_line copying libtbx/command_line/seconds_since_the_epoch.py -> build/lib/libtbx/command_line creating build/lib/libtbx/sphinx copying libtbx/sphinx/pubmed.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/python_string.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/phil.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/__init__.py -> build/lib/libtbx/sphinx creating build/lib/libtbx/scheduling copying libtbx/scheduling/mp_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/job_scheduler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/shared_resource.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/result.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/thread_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/socket_queue.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/process_pool.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/file_queue.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/stacktrace.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/mainthread.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/__init__.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/parallel_for.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/philgen.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/cluster_handler.py -> build/lib/libtbx/scheduling creating build/lib/libtbx/bundle copying libtbx/bundle/copy_all.py -> build/lib/libtbx/bundle copying libtbx/bundle/copy_runtime_sources.py -> build/lib/libtbx/bundle copying libtbx/bundle/install_bat.py -> build/lib/libtbx/bundle copying libtbx/bundle/copy_build_libtbx.py -> build/lib/libtbx/bundle copying libtbx/bundle/__init__.py -> build/lib/libtbx/bundle copying libtbx/bundle/utils.py -> build/lib/libtbx/bundle copying libtbx/bundle/install_csh.py -> build/lib/libtbx/bundle creating build/lib/libtbx/program_utils copying libtbx/program_utils/result.py -> build/lib/libtbx/program_utils copying libtbx/program_utils/statistics_info.py -> build/lib/libtbx/program_utils copying libtbx/program_utils/__init__.py -> build/lib/libtbx/program_utils creating build/lib/libtbx/development copying libtbx/development/timers.py -> build/lib/libtbx/development copying libtbx/development/xcode_build_phase.py -> build/lib/libtbx/development copying libtbx/development/except_Exception.py -> build/lib/libtbx/development copying libtbx/development/__init__.py -> build/lib/libtbx/development creating build/lib/libtbx/server copying libtbx/server/StartServer.py -> build/lib/libtbx/server copying libtbx/server/FileServer.py -> build/lib/libtbx/server copying libtbx/server/SocketServer.py -> build/lib/libtbx/server copying libtbx/server/FileSocket.py -> build/lib/libtbx/server copying libtbx/server/__init__.py -> build/lib/libtbx/server copying libtbx/server/FileClient.py -> build/lib/libtbx/server creating build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling_helpers.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/sge_utils.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/tst.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/pbs_utils.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/remote.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/generic.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/lsf.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/looping.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/__init__.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/communication.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling.py -> build/lib/libtbx/queuing_system_utils creating build/lib/libtbx/test_utils copying libtbx/test_utils/__init__.py -> build/lib/libtbx/test_utils copying libtbx/test_utils/parallel.py -> build/lib/libtbx/test_utils creating build/lib/libtbx/auto_build copying libtbx/auto_build/write_gui_dispatcher_include.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/regenerate_module_files.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_base_packages.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/plus_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/installer_utils.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_mac_app.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_windows_exe.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/make_bundle.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_mac_pkg.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/package_defs.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_conda.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_windows_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/__init__.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/setup_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/bootstrap.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_distribution.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/rpath.py -> build/lib/libtbx/auto_build creating build/lib/libtbx/langchain copying libtbx/langchain/phenix_knowledge.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_build_db.py -> build/lib/libtbx/langchain copying libtbx/langchain/__init__.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_inspect_db.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_query_docs.py -> build/lib/libtbx/langchain creating build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/transfer.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/util.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/status.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/polling.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/submission.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/__init__.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/errors.py -> build/lib/libtbx/queuing_system_utils/processing creating build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/hypothesis_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/program_registry.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/file_utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/workflow_state.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/validation_inspector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/session_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/template_builder.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/rate_limit_handler.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/nl_to_phil.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/session.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/format_validation.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/dry_run_manager.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/docs_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/workflow_engine.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/validation_history.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/pattern_manager.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/program_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/event_log.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/advice_preprocessor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph_nodes.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/rules_selector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/phenix_utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/error_classifier.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/metric_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/thinking_agent.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/command_builder.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/generate_logic_doc.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/directive_extractor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/generate_safety_docs.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/intent_classifier.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/sanity_checker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/config_loader.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/contract.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/gate_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/memory.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/metrics_analyzer.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/transport.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/log_section_extractor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph_state.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/api_client.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/__init__.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/phil_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/error_analyzer.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/tst_agent_enhancements.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/planner.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/structure_model.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/failure_diagnoser.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/yaml_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/kb_tags.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/event_formatter.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/file_metadata.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/best_files_tracker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/display_data_model.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/strategy_memory.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/placement_checker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/plan_generator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/perceive_checks.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/command_postprocessor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/directive_validator.py -> build/lib/libtbx/langchain/agent creating build/lib/libtbx/langchain/validation copying libtbx/langchain/validation/core_validator.py -> build/lib/libtbx/langchain/validation copying libtbx/langchain/validation/mtz_utils.py -> build/lib/libtbx/langchain/validation copying libtbx/langchain/validation/phenix_refine.py -> build/lib/libtbx/langchain/validation copying libtbx/langchain/validation/base.py -> build/lib/libtbx/langchain/validation copying libtbx/langchain/validation/__init__.py -> build/lib/libtbx/langchain/validation copying libtbx/langchain/validation/registry.py -> build/lib/libtbx/langchain/validation creating build/lib/libtbx/langchain/commands copying libtbx/langchain/commands/base.py -> build/lib/libtbx/langchain/commands copying libtbx/langchain/commands/__init__.py -> build/lib/libtbx/langchain/commands creating build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/text_processing.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/query.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/run_utils.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/__init__.py -> build/lib/libtbx/langchain/utils creating build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/yaml_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/thinking_prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/prompts_hybrid.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/program_registration.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/explanation_prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/plan_schema.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/summary_display.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/phenix_programs.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/plan_template_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/api_schema.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/metric_patterns.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/kb_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/html_report_template.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/__init__.py -> build/lib/libtbx/langchain/knowledge creating build/lib/libtbx/langchain/examples copying libtbx/langchain/examples/__init__.py -> build/lib/libtbx/langchain/examples creating build/lib/libtbx/langchain/core copying libtbx/langchain/core/llm.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/types.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/__init__.py -> build/lib/libtbx/langchain/core creating build/lib/libtbx/langchain/strategies copying libtbx/langchain/strategies/base.py -> build/lib/libtbx/langchain/strategies copying libtbx/langchain/strategies/__init__.py -> build/lib/libtbx/langchain/strategies creating build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/agent_session_analyzer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/state_extractor.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/summarizer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/analyzer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/log_info.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/__init__.py -> build/lib/libtbx/langchain/analysis creating build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/document_loader.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/retriever.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/vector_store.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/__init__.py -> build/lib/libtbx/langchain/rag creating build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_contract_compliance.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase4_history_flags.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_v112_13_fixes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_directives.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase5_error_classification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_scenario_tracer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_action_item_1.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/test_api_keys.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_intent_classifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dry_run.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_new_programs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_backward_compat.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_integration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_structure_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase8_command_building.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_old_client_compat.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_state_serialization.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_program_registration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_n_bugs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/audit_phase_rename.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_condition_fix.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_command_builder.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phaser_multimodel.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_summary.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_api_schema.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_workflow_state.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_yaml_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_audit_fixes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_transport.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_decision_flow.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directives_integration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_template.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_metric_patterns.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_categorization.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_sanity_checker.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_copies_tracking.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validate_file_overrides.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_docs_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_strategy_memory.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_advice_preprocessing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autosol_bugs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_metrics_analyzer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_reason_codes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phil_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_error_classifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_langchain_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_best_files_tracker.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_display_data_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/__init__.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase0_static_audit.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/run_all_tests.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_error_analyzer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_yaml_config.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_thinking_defense.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_summary_display.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_gate_evaluator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_event_system.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validation_history.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_log_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_generator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_fix_verification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_history_analysis.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/analyze_tutorial_runs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_pattern_manager.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_thinking_agent.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3_bug5.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_schema.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_shared_code_imports.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_explanation_prompts.py -> build/lib/libtbx/langchain/tests creating build/lib/libtbx/langchain/tests/integration copying libtbx/langchain/tests/integration/__init__.py -> build/lib/libtbx/langchain/tests/integration creating build/lib/simtbx/diffBragg copying simtbx/diffBragg/mpi_logger.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/psf.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/prep_stage2_input.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/device.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/attr_list.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/ensemble_refine_launcher.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/parameter_errors.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_ensemble_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/phil.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/__init__.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_io.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/stage_two_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/utils.py -> build/lib/simtbx/diffBragg creating build/lib/simtbx/modeling copying simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/lib/simtbx/modeling copying simtbx/modeling/forward_models.py -> build/lib/simtbx/modeling copying simtbx/modeling/__init__.py -> build/lib/simtbx/modeling copying simtbx/modeling/predictions.py -> build/lib/simtbx/modeling creating build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_threads.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_init.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_beam.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gauss_argchk.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_multisource_background.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_input.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_crystal.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/anisotropic_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/sim_data.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/__init__.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/utils.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/lib/simtbx/nanoBragg creating build/lib/simtbx/gpu copying simtbx/gpu/tst_gpu_multisource_background.py -> build/lib/simtbx/gpu copying simtbx/gpu/tst_shoeboxes.py -> build/lib/simtbx/gpu copying simtbx/gpu/tst_exafel_api.py -> build/lib/simtbx/gpu copying simtbx/gpu/__init__.py -> build/lib/simtbx/gpu creating build/lib/simtbx/kokkos copying simtbx/kokkos/tst_kokkos_lib.py -> build/lib/simtbx/kokkos copying simtbx/kokkos/__init__.py -> build/lib/simtbx/kokkos creating build/lib/simtbx/pixel copying simtbx/pixel/__init__.py -> build/lib/simtbx/pixel creating build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/base_refiner.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/stage_two_refiner.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/parameters.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/geometry.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/__init__.py -> build/lib/simtbx/diffBragg/refiners creating build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems creating build/lib/gltbx/command_line copying gltbx/command_line/try_imports.py -> build/lib/gltbx/command_line copying gltbx/command_line/__init__.py -> build/lib/gltbx/command_line creating build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/util.py -> build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/__init__.py -> build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/max_like.py -> build/lib/serialtbx/mono_simulation creating build/lib/serialtbx/detector copying serialtbx/detector/jungfrau.py -> build/lib/serialtbx/detector copying serialtbx/detector/rayonix.py -> build/lib/serialtbx/detector copying serialtbx/detector/cspad.py -> build/lib/serialtbx/detector copying serialtbx/detector/xtc.py -> build/lib/serialtbx/detector copying serialtbx/detector/__init__.py -> build/lib/serialtbx/detector creating build/lib/serialtbx/util copying serialtbx/util/construct_frame.py -> build/lib/serialtbx/util copying serialtbx/util/energy_scan_notch_finder.py -> build/lib/serialtbx/util copying serialtbx/util/time.py -> build/lib/serialtbx/util copying serialtbx/util/__init__.py -> build/lib/serialtbx/util creating build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/generic_detector.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/cspad_detector.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/metrology.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/__init__.py -> build/lib/serialtbx/detector/legacy_metrology creating build/lib/scitbx/serialization copying scitbx/serialization/__init__.py -> build/lib/scitbx/serialization creating build/lib/scitbx/suffixtree copying scitbx/suffixtree/single.py -> build/lib/scitbx/suffixtree copying scitbx/suffixtree/__init__.py -> build/lib/scitbx/suffixtree creating build/lib/scitbx/command_line copying scitbx/command_line/show_sizes.py -> build/lib/scitbx/command_line copying scitbx/command_line/apply_tapenade_hints.py -> build/lib/scitbx/command_line copying scitbx/command_line/__init__.py -> build/lib/scitbx/command_line copying scitbx/command_line/generate_error_h.py -> build/lib/scitbx/command_line copying scitbx/command_line/histogram.py -> build/lib/scitbx/command_line copying scitbx/command_line/show_exp_times.py -> build/lib/scitbx/command_line copying scitbx/command_line/unicode_examples.py -> build/lib/scitbx/command_line creating build/lib/scitbx/linalg copying scitbx/linalg/svd.py -> build/lib/scitbx/linalg copying scitbx/linalg/eigensystem.py -> build/lib/scitbx/linalg copying scitbx/linalg/ext.py -> build/lib/scitbx/linalg copying scitbx/linalg/__init__.py -> build/lib/scitbx/linalg copying scitbx/linalg/householder.py -> build/lib/scitbx/linalg creating build/lib/scitbx/stdlib copying scitbx/stdlib/__init__.py -> build/lib/scitbx/stdlib creating build/lib/scitbx/misc copying scitbx/misc/__init__.py -> build/lib/scitbx/misc creating build/lib/scitbx/line_search copying scitbx/line_search/__init__.py -> build/lib/scitbx/line_search creating build/lib/scitbx/matrix copying scitbx/matrix/row_echelon.py -> build/lib/scitbx/matrix copying scitbx/matrix/__init__.py -> build/lib/scitbx/matrix creating build/lib/scitbx/examples copying scitbx/examples/minimizer_comparisons.py -> build/lib/scitbx/examples copying scitbx/examples/immoptibox_ports.py -> build/lib/scitbx/examples copying scitbx/examples/lbfgs_recipe.py -> build/lib/scitbx/examples copying scitbx/examples/flex_grid.py -> build/lib/scitbx/examples copying scitbx/examples/chebyshev_lsq_example.py -> build/lib/scitbx/examples copying scitbx/examples/flex_array_loops.py -> build/lib/scitbx/examples copying scitbx/examples/integrating_a_weighted_sinc_function.py -> build/lib/scitbx/examples copying scitbx/examples/principal_axes_of_inertia.py -> build/lib/scitbx/examples copying scitbx/examples/__init__.py -> build/lib/scitbx/examples copying scitbx/examples/bootstrap.py -> build/lib/scitbx/examples copying scitbx/examples/functions.py -> build/lib/scitbx/examples copying scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/lib/scitbx/examples copying scitbx/examples/rigid_body_refinement_core.py -> build/lib/scitbx/examples creating build/lib/scitbx/iso_surface copying scitbx/iso_surface/tst_iso_surface.py -> build/lib/scitbx/iso_surface copying scitbx/iso_surface/__init__.py -> build/lib/scitbx/iso_surface creating build/lib/scitbx/error copying scitbx/error/tst_error.py -> build/lib/scitbx/error copying scitbx/error/__init__.py -> build/lib/scitbx/error creating build/lib/scitbx/glmtbx copying scitbx/glmtbx/__init__.py -> build/lib/scitbx/glmtbx creating build/lib/scitbx/sparse copying scitbx/sparse/__init__.py -> build/lib/scitbx/sparse creating build/lib/scitbx/random copying scitbx/random/__init__.py -> build/lib/scitbx/random creating build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_func_free_line_search.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_ext.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_curvatures.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_lbfgs_fem.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/__init__.py -> build/lib/scitbx/lbfgs creating build/lib/scitbx/wigner copying scitbx/wigner/__init__.py -> build/lib/scitbx/wigner copying scitbx/wigner/tst_wigner3j.py -> build/lib/scitbx/wigner creating build/lib/scitbx/stl copying scitbx/stl/tst_set.py -> build/lib/scitbx/stl copying scitbx/stl/vector.py -> build/lib/scitbx/stl copying scitbx/stl/tst_map.py -> build/lib/scitbx/stl copying scitbx/stl/set.py -> build/lib/scitbx/stl copying scitbx/stl/map.py -> build/lib/scitbx/stl copying scitbx/stl/__init__.py -> build/lib/scitbx/stl copying scitbx/stl/tst_vector.py -> build/lib/scitbx/stl creating build/lib/scitbx/boost_python copying scitbx/boost_python/__init__.py -> build/lib/scitbx/boost_python creating build/lib/scitbx/rigid_body copying scitbx/rigid_body/tst.py -> build/lib/scitbx/rigid_body copying scitbx/rigid_body/__init__.py -> build/lib/scitbx/rigid_body creating build/lib/scitbx/dtmin copying scitbx/dtmin/realsymmetricpseudoinverse.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/twisted_gaussian.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/bounds.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/refinebase.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/min_logging.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/optional.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/compulsory.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/auxiliary.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/reparams.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/__init__.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/minimizer.py -> build/lib/scitbx/dtmin creating build/lib/scitbx/math copying scitbx/math/so3_lie_algebra.py -> build/lib/scitbx/math copying scitbx/math/curve_fitting.py -> build/lib/scitbx/math copying scitbx/math/incremental_SO3_sampling.py -> build/lib/scitbx/math copying scitbx/math/sphere_sphere_intersection.py -> build/lib/scitbx/math copying scitbx/math/tst_undirected_graph.py -> build/lib/scitbx/math copying scitbx/math/undirected_graph.py -> build/lib/scitbx/math copying scitbx/math/distributions.py -> build/lib/scitbx/math copying scitbx/math/gaussian.py -> build/lib/scitbx/math copying scitbx/math/tst_zernike_mom.py -> build/lib/scitbx/math copying scitbx/math/cubic_spline.py -> build/lib/scitbx/math copying scitbx/math/zernike_align_fft.py -> build/lib/scitbx/math copying scitbx/math/superpose.py -> build/lib/scitbx/math copying scitbx/math/tst_bessel_zeros.py -> build/lib/scitbx/math copying scitbx/math/tst_2d_zernike.py -> build/lib/scitbx/math copying scitbx/math/clustering.py -> build/lib/scitbx/math copying scitbx/math/scale_curves.py -> build/lib/scitbx/math copying scitbx/math/spe.py -> build/lib/scitbx/math copying scitbx/math/ext.py -> build/lib/scitbx/math copying scitbx/math/tst_zernike.py -> build/lib/scitbx/math copying scitbx/math/chebyshev_lsq_fit.py -> build/lib/scitbx/math copying scitbx/math/lefebvre.py -> build/lib/scitbx/math copying scitbx/math/des_3_240_21.py -> build/lib/scitbx/math copying scitbx/math/des_3_100_13.py -> build/lib/scitbx/math copying scitbx/math/fit_quadratic_function.py -> build/lib/scitbx/math copying scitbx/math/tst_multivariate_moments.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_900_ylm.py -> build/lib/scitbx/math copying scitbx/math/multiple_superposition.py -> build/lib/scitbx/math copying scitbx/math/gumbel.py -> build/lib/scitbx/math copying scitbx/math/besselk.py -> build/lib/scitbx/math copying scitbx/math/sieve_of_eratosthenes.py -> build/lib/scitbx/math copying scitbx/math/periodogram.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_900.py -> build/lib/scitbx/math copying scitbx/math/gaussian_fit.py -> build/lib/scitbx/math copying scitbx/math/__init__.py -> build/lib/scitbx/math copying scitbx/math/breakpoint.py -> build/lib/scitbx/math copying scitbx/math/euler_angles.py -> build/lib/scitbx/math copying scitbx/math/tst_so3_lie_algebra.py -> build/lib/scitbx/math copying scitbx/math/fit_peak.py -> build/lib/scitbx/math copying scitbx/math/farey.py -> build/lib/scitbx/math copying scitbx/math/minimum_covering_ellipsoid.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_400.py -> build/lib/scitbx/math creating build/lib/scitbx/slatec copying scitbx/slatec/__init__.py -> build/lib/scitbx/slatec creating build/lib/scitbx/lstbx copying scitbx/lstbx/normal_eqns.py -> build/lib/scitbx/lstbx copying scitbx/lstbx/normal_eqns_solving.py -> build/lib/scitbx/lstbx copying scitbx/lstbx/__init__.py -> build/lib/scitbx/lstbx creating build/lib/scitbx/array_family copying scitbx/array_family/flex.py -> build/lib/scitbx/array_family copying scitbx/array_family/__init__.py -> build/lib/scitbx/array_family copying scitbx/array_family/shared.py -> build/lib/scitbx/array_family creating build/lib/scitbx/source_generators copying scitbx/source_generators/lbfgs_fem.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/flex_fwd_h.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/__init__.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/utils.py -> build/lib/scitbx/source_generators creating build/lib/scitbx/graph copying scitbx/graph/tst_tardy_tree_find_paths.py -> build/lib/scitbx/graph copying scitbx/graph/rigidity_matrix_symbolic.py -> build/lib/scitbx/graph copying scitbx/graph/tardy_tree.py -> build/lib/scitbx/graph copying scitbx/graph/rigidity.py -> build/lib/scitbx/graph copying scitbx/graph/tst_rigidity.py -> build/lib/scitbx/graph copying scitbx/graph/tst_tardy_tree.py -> build/lib/scitbx/graph copying scitbx/graph/test_cases_tardy_pdb.py -> build/lib/scitbx/graph copying scitbx/graph/__init__.py -> build/lib/scitbx/graph copying scitbx/graph/tst_utils.py -> build/lib/scitbx/graph copying scitbx/graph/utils.py -> build/lib/scitbx/graph creating build/lib/scitbx/python_utils copying scitbx/python_utils/tst_random_transform.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/command_line.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/robust_statistics.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/signal_utils.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_robust.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/graph_tools.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/__init__.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/random_transform.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/misc.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_graph.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/dicts.py -> build/lib/scitbx/python_utils creating build/lib/scitbx/graphics_utils copying scitbx/graphics_utils/tst.py -> build/lib/scitbx/graphics_utils copying scitbx/graphics_utils/__init__.py -> build/lib/scitbx/graphics_utils creating build/lib/scitbx/tests copying scitbx/tests/tst_r3_utils.py -> build/lib/scitbx/tests copying scitbx/tests/tst_smoothing.py -> build/lib/scitbx/tests copying scitbx/tests/differential_evolution.py -> build/lib/scitbx/tests copying scitbx/tests/simplex.py -> build/lib/scitbx/tests copying scitbx/tests/direct_search_simulated_annealing.py -> build/lib/scitbx/tests copying scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/lib/scitbx/tests copying scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/lib/scitbx/tests copying scitbx/tests/tst_basic.py -> build/lib/scitbx/tests copying scitbx/tests/__init__.py -> build/lib/scitbx/tests copying scitbx/tests/tst_cubicle_neighbors.py -> build/lib/scitbx/tests copying scitbx/tests/golden_section_search.py -> build/lib/scitbx/tests copying scitbx/tests/tst_minimizer_lbfgs_general.py -> build/lib/scitbx/tests creating build/lib/scitbx/suffixtree/test copying scitbx/suffixtree/test/tst_single.py -> build/lib/scitbx/suffixtree/test copying scitbx/suffixtree/test/__init__.py -> build/lib/scitbx/suffixtree/test creating build/lib/scitbx/suffixtree/boost_python copying scitbx/suffixtree/boost_python/__init__.py -> build/lib/scitbx/suffixtree/boost_python creating build/lib/scitbx/linalg/boost_python copying scitbx/linalg/boost_python/__init__.py -> build/lib/scitbx/linalg/boost_python creating build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_lapack_dsyev.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_cholesky.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_matrix.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_eigensystem.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/__init__.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_lapack_svd.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_svd.py -> build/lib/scitbx/linalg/tests creating build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/tst_row_echelon.py -> build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/__init__.py -> build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/tst_householder.py -> build/lib/scitbx/matrix/tests creating build/lib/scitbx/examples/bevington copying scitbx/examples/bevington/silver.py -> build/lib/scitbx/examples/bevington copying scitbx/examples/bevington/__init__.py -> build/lib/scitbx/examples/bevington creating build/lib/scitbx/glmtbx/boost_python copying scitbx/glmtbx/boost_python/__init__.py -> build/lib/scitbx/glmtbx/boost_python creating build/lib/scitbx/glmtbx/tests copying scitbx/glmtbx/tests/tst.py -> build/lib/scitbx/glmtbx/tests copying scitbx/glmtbx/tests/__init__.py -> build/lib/scitbx/glmtbx/tests creating build/lib/scitbx/sparse/boost_python copying scitbx/sparse/boost_python/__init__.py -> build/lib/scitbx/sparse/boost_python creating build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/tst_sparse.py -> build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/tst_lu_factorization.py -> build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/__init__.py -> build/lib/scitbx/sparse/tests creating build/lib/scitbx/random/boost_python copying scitbx/random/boost_python/__init__.py -> build/lib/scitbx/random/boost_python creating build/lib/scitbx/random/tests copying scitbx/random/tests/__init__.py -> build/lib/scitbx/random/tests copying scitbx/random/tests/tst_random.py -> build/lib/scitbx/random/tests creating build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/twisted_gaussian.py -> build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/run.py -> build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/__init__.py -> build/lib/scitbx/lbfgs/dev creating build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_featherstone.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_utils.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_molecules.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_molecules.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/featherstone.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_singular.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/__init__.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/utils.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_simulation.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_free_motion.py -> build/lib/scitbx/rigid_body/proto creating build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/body_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/spatial_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/joint_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/featherstone.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/make_bundles.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/wx_tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_basic.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/__init__.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_energy_plots.py -> build/lib/scitbx/rigid_body/essence creating build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_booth.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_basic.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/__init__.py -> build/lib/scitbx/dtmin/regression creating build/lib/scitbx/math/dev copying scitbx/math/dev/__init__.py -> build/lib/scitbx/math/dev creating build/lib/scitbx/math/boost_python copying scitbx/math/boost_python/__init__.py -> build/lib/scitbx/math/boost_python creating build/lib/scitbx/math/erf copying scitbx/math/erf/__init__.py -> build/lib/scitbx/math/erf creating build/lib/scitbx/math/tests copying scitbx/math/tests/tst_periodogram.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_euler_angles.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_curve_fitting.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_similarity_indices.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_r3_rotation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_g_function.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_resample.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_line_search.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_math.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_angle_derivative.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_tetrahedron.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_exp_functions.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_weighted_correlation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_halton.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_bessel.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gaussian.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_superpose.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_fit_peak.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_orthonormal_basis.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_quadrature.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gcd.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_cubic_equation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_dmatrix.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/__init__.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_fit_quadratic_function.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_clustering.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/lib/scitbx/math/tests creating build/lib/scitbx/lstbx/benchmarks copying scitbx/lstbx/benchmarks/__init__.py -> build/lib/scitbx/lstbx/benchmarks creating build/lib/scitbx/lstbx/boost_python copying scitbx/lstbx/boost_python/__init__.py -> build/lib/scitbx/lstbx/boost_python creating build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/tst_normal_equations.py -> build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/test_problems.py -> build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/__init__.py -> build/lib/scitbx/lstbx/tests creating build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/regression_test.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_flex.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_smart_selection.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/__init__.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_shared.py -> build/lib/scitbx/array_family/boost_python creating build/lib/scitbx/array_family/accessors copying scitbx/array_family/accessors/__init__.py -> build/lib/scitbx/array_family/accessors creating build/lib/scitbx/array_family/detail copying scitbx/array_family/detail/__init__.py -> build/lib/scitbx/array_family/detail creating build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_apply.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_algebras.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_functors.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_reductions.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/operator_functor_info.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_all.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_std_imports.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/__init__.py -> build/lib/scitbx/source_generators/array_family creating build/lib/qttbx/viewers copying qttbx/viewers/chimerax.py -> build/lib/qttbx/viewers copying qttbx/viewers/__init__.py -> build/lib/qttbx/viewers running egg_info creating cctbx.egg-info writing cctbx.egg-info/PKG-INFO writing dependency_links to cctbx.egg-info/dependency_links.txt writing requirements to cctbx.egg-info/requires.txt writing top-level names to cctbx.egg-info/top_level.txt writing manifest file 'cctbx.egg-info/SOURCES.txt' reading manifest file 'cctbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'cctbx.egg-info/SOURCES.txt' installing to build/bdist.linux-loongarch64/wheel running install running install_lib creating build/bdist.linux-loongarch64/wheel creating build/bdist.linux-loongarch64/wheel/boost copying build/lib/boost/rational.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/python.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/optional.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/tuple.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/std_pair.py -> build/bdist.linux-loongarch64/wheel/./boost creating build/bdist.linux-loongarch64/wheel/cctbx_website creating build/bdist.linux-loongarch64/wheel/cctbx_website/command_line copying build/lib/cctbx_website/command_line/tst_comment_to_docstring.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/comment_to_docstring.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_html.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_for_boost.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line creating build/bdist.linux-loongarch64/wheel/cctbx_website/regression copying build/lib/cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_12_script_compare_ss.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_11_script_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_8_doc_maps_intro.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_13_script_ideal_ss.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_1_template.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_py_from_html.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/exercise.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_17_script_rfactors.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website copying build/lib/cctbx_website/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website copying build/lib/cctbx_website/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website creating build/bdist.linux-loongarch64/wheel/boost_adaptbx creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/rational.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/python.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/optional.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/tuple.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/std_pair.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/double_overflow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_platform_info.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/segmentation_fault.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/gcd.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/divide_by_zero.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/inexact.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/int_overflow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/lcm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_environ_usage.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/hybrid_times.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/minimum_cut_enumerate.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/maximum_clique.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/clustering_algorithm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/utility.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/breadth_first_search.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/graph_structure_comparison.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/min_cut_max_flow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/connected_component_algorithm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/metric.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx creating build/bdist.linux-loongarch64/wheel/mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninit.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/transdent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/diangle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninput.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitealyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenout.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/dualparse.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/mainchain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenamedefs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename creating build/bdist.linux-loongarch64/wheel/mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/nrubs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage creating build/bdist.linux-loongarch64/wheel/mmtbx/maps copying build/lib/mmtbx/maps/tst_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fem.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/composite_omit_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/mtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/kick.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fobs_minus_fobs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/map_model_cc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement copying build/lib/mmtbx/refinement/targets.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tardy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/wx_tardy_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_fit_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/occupancies.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/print_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_weight.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_small_molecule.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residues.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/weight.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/individual_sites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/explode_and_refine.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/adp.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/occupancy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/flip_peptide_side_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/anomalous_scatterer_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/group.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_refinement_flags.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/inspect_tardy_trajectory.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_occupancy_selections.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/calculators.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/refinement_flags.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/orca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/wrappers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/adp_refinement.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/energy_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_real_space_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_web_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_entry_request.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_web_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb creating build/bdist.linux-loongarch64/wheel/mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_validate_H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_minimize.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/neutron_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/reduce_hydrogen.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_connectivity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/validate_H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/parameterization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_coefficients.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_0.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/find.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/connectivity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/build_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_9.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens creating build/bdist.linux-loongarch64/wheel/mmtbx/alignment copying build/lib/mmtbx/alignment/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/alignment creating build/bdist.linux-loongarch64/wheel/mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/cif_parser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components creating build/bdist.linux-loongarch64/wheel/mmtbx/masks copying build/lib/mmtbx/masks/tst_masks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/tst_asu_mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/lattice.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/proq2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/den copying build/lib/mmtbx/den/plot_weights.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den copying build/lib/mmtbx/den/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den copying build/lib/mmtbx/den/refinement.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den creating build/bdist.linux-loongarch64/wheel/mmtbx/command_line copying build/lib/mmtbx/command_line/sort_hetatms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/show_r_factors_by_shell.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fetch_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_rotarama_cache.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/molprobity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_fem.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_tls_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mon_lib_cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_cablam_cache.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/models_as_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_puckers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/altloc_remediate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cif_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/atom_valence_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/table_one.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ligand_restraints_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/density_modification.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/debug_riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/nonbonded_overlaps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/r_factor_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/water_b_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rigid_bond_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/kinemage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validation_summary.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_box.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xmanip.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/remove_outliers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fab_elbow_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hydrogenate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/taam_minus_iam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_atom_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reciprocal_space_arrays.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/electrons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/apply_ncs_to_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/grow_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/f000.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rank_scale_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cc_star.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/estimate_bijvoet_ratio.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_diff_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/distance_difference.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prepare_pdb_deposition.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probe2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/sisa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/where_is_that_cif_file.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/super.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer_score.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/search_pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_model_histogram.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/perigee.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_model_distances.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maximum_entropy_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_residue_in_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/refine_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/verify_mon_lib_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_peaks_holes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prune_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_atom_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mtz2map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename_old.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fake_f_obs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fobs_minus_fobs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_H_cl_app.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_aev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/massage_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line creating build/bdist.linux-loongarch64/wheel/mmtbx/validation copying build/lib/mmtbx/validation/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/fav_lists.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/waters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_arguments.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_experimental.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_symmetry_SS.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_model_properties.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze_rare.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_keep_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_find_region_max_value.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/run_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_waters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbd_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/graphics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/experimental.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/convert_from_text.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/convert_lists.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ensembles.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/phi_psi_2_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/model_properties.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/kinemage_templates.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_mpscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/table_from_json.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comprehensive_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/analyze_peptides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_others_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/chain_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/datasets.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry copying build/lib/mmtbx/geometry/shared_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/topology.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/clash.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/altloc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/sphere_surface_sampling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/indexing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/asa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry creating build/bdist.linux-loongarch64/wheel/mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_metal_link_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_loop_closure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_apply_cif_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_maps_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_model_cc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_type_parser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/make_fake_anomalous_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mtz2map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geo_min_restraints_phil.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_command_line_input.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_timeout.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_statistics_output.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ligand_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sequence_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_table.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_origin_ids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_adp_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ml_estimate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_minimize_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_arrows_on_plot.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_multi_residue_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_flipping_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_type_registry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_merge.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_pairs_within.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_dedeuterate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_utils_merge_models.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_mtrix.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/tst_real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_remediate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_table_one.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sort_hetatms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/tst_clashes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_msa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_dynamics_cli.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_no_cryst1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_prune_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validation_summary.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sampled_model_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_models_to_from_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_get_t_scheme.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tst_polder_box.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_psi_phi_extraction.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_and_dm.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_schrodinger_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_chain_break.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rigid_bond_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_refine_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_fd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_alignment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_special_term_at_end.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_h_to_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_isomorphous_difference_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_lrv.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_examples.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_probe.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_ccs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cis_trans_peptide_link.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rank_scale_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cc_star.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/kbu_refinery.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_mosaic.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/f_model_all_scales.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/mosaic.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/real_space copying build/lib/mmtbx/real_space/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/real_space copying build/lib/mmtbx/real_space/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/real_space creating build/bdist.linux-loongarch64/wheel/mmtbx/ligands copying build/lib/mmtbx/ligands/tst_xtal_screens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/hierarchy_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_ready_set_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/elbow_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/electrons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_basics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_electron_scripting.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/rdkit_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/chemistry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/xtal_screens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/map_tools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building creating build/bdist.linux-loongarch64/wheel/mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/tst_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/lifi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/minimize_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/extend_sidechains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/merge_models.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building creating build/bdist.linux-loongarch64/wheel/mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/starting_conformations.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/ccd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/max_lik copying build/lib/mmtbx/max_lik/max_like_non_uniform.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_maxlik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_max_lik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/maxlik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik creating build/bdist.linux-loongarch64/wheel/mmtbx/utils copying build/lib/mmtbx/utils/ntc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/rotatable_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/fab_elbow_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/grid2d.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/tst_switch_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils creating build/bdist.linux-loongarch64/wheel/mmtbx/nci copying build/lib/mmtbx/nci/skew_kurt_plot.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/data_filtering.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/tst_hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci creating build/bdist.linux-loongarch64/wheel/mmtbx/density_modification copying build/lib/mmtbx/density_modification/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/density_modification copying build/lib/mmtbx/density_modification/tst_density_modification.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/density_modification creating build/bdist.linux-loongarch64/wheel/mmtbx/ions copying build/lib/mmtbx/ions/identify.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_approx_zn.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_symmetry_axis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pickle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/halides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_geometries.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions creating build/bdist.linux-loongarch64/wheel/mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/dump_sites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/tst_validate_mg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/build.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_k.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/environment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_parameters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_validate_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca_svm.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_environment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_mg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions creating build/bdist.linux-loongarch64/wheel/mmtbx/model copying build/lib/mmtbx/model/model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model creating build/bdist.linux-loongarch64/wheel/mmtbx/reduce copying build/lib/mmtbx/reduce/Optimizers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/InteractionGraph.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/Movers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/arrays.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/f_model_info.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/f_model copying build/lib/mmtbx/f_model/f_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/f_model_info.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model creating build/bdist.linux-loongarch64/wheel/mmtbx/ncs copying build/lib/mmtbx/ncs/cartesian_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/tncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_restraints_group_list.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/xmanip.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/dynamics copying build/lib/mmtbx/dynamics/constants.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/ensemble_cd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_sa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/cartesian_dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_cartesian_dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/pdb_distances.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/find_peaks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/model_vs_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/tls copying build/lib/mmtbx/tls/perm10.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/command_line.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/ladp.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/optimise_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm15.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/decompose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm12.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm13.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm14.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm11.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/xmanip_tasks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/msa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/resolve_resources.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/invariant_domain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/solvent copying build/lib/mmtbx/solvent/ensemble_ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/map_to_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent creating build/bdist.linux-loongarch64/wheel/mmtbx/programs copying build/lib/mmtbx/programs/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fetch.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_puckers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_valence_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ligand_restraints_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/debug_riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/nonbonded_overlaps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/water_b_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/elbow_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hydrogenate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/taam_minus_iam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_atom_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/prepare_pdb_deposition.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probe2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename_old.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs creating build/bdist.linux-loongarch64/wheel/mmtbx/polygon copying build/lib/mmtbx/polygon/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_polygon_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/output.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_gui.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon creating build/bdist.linux-loongarch64/wheel/mmtbx/sisa creating build/bdist.linux-loongarch64/wheel/mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_ga.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_masks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_util.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_input.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_mtz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_optimize.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa copying build/lib/mmtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/grow_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/rotamer copying build/lib/mmtbx/rotamer/nqh.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/sidechain_angles.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/graphics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_rotamer_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/rotamer_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/n_dim_table.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer creating build/bdist.linux-loongarch64/wheel/mmtbx/ringer copying build/lib/mmtbx/ringer/tst_emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_scoring.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/tst_em_rscc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rolling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rscc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/rsr copying build/lib/mmtbx/rsr/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rsr copying build/lib/mmtbx/rsr/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rsr copying build/lib/mmtbx/domains_from_pae.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/probe copying build/lib/mmtbx/probe/tst_mmtbx_probe_ext.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/AtomTypes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/Helpers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe creating build/bdist.linux-loongarch64/wheel/mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_idealized_aa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_metal_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/mmtbx_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/hydrogen_restrictions.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_carbo_linking.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_neutron_distance.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_chiral_values.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rotamer_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/idealized_aa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conv_v2_v3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_hand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_chg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_motif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/server.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/bondlength_defaults.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_all_cif_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_user_supplied_library.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conformation_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rotamer_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_paral_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_server.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_correct_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_superpose_ideal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_deuterium_terminii.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_protein_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_linking.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_setup.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_mixins.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/geostd_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library creating build/bdist.linux-loongarch64/wheel/mmtbx/twinning copying build/lib/mmtbx/twinning/probabalistic_detwinning.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/twin_f_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning creating build/bdist.linux-loongarch64/wheel/mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/regularize_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/find_ss_from_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst_segid.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure creating build/bdist.linux-loongarch64/wheel/mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_io.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/tst_insertion_codes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/secondary_structure_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/proteins.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/ss_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/nucleic_acids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure creating build/bdist.linux-loongarch64/wheel/mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/sample_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/rotamer_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/all_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues creating build/bdist.linux-loongarch64/wheel/mmtbx/scaling copying build/lib/mmtbx/scaling/bayesian_estimator.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/make_param.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_plots.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_rejection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/mean_f_rms_f.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_wilson.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_absences.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pre_scale.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/ta_alpha_beta_calc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/basic_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/random_omit.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twmad_scale.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/sigmaa_estimation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/remove_outliers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_mean_f_rms_f.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_outlier.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/massage_twin_detwin_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_sigmaa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absence_likelihood.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absolute_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/thorough_outlier_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_massage_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absences.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/fa_estimation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pair_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_bayesian_estimator.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/data_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twin_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling creating build/bdist.linux-loongarch64/wheel/mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/pair_interaction.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_05.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_04.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction creating build/bdist.linux-loongarch64/wheel/mmtbx/ias copying build/lib/mmtbx/ias/tst_ias.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ias copying build/lib/mmtbx/ias/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ias copying build/lib/mmtbx/clashes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry_restraints creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/base_qm_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/reference.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/external.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/geo_file_parsing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/mopac_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/c_beta.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qm_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qi_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/afitt.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/orca_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints creating build/bdist.linux-loongarch64/wheel/mmtbx/disorder copying build/lib/mmtbx/disorder/backbone.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_backbone.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/analyze_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_analyze_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/check_cdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/sf4_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/altloc_weighting.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/LinkedResidues.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/testing_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_setup.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_base_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hpdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_hpdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/nucleotides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/histidines.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library creating build/bdist.linux-loongarch64/wheel/xcif creating build/bdist.linux-loongarch64/wheel/xcif/regression copying build/lib/xcif/regression/tst_non_strict_mode.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_api_compat.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_engine.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_parse_verify.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_quoted_string_delimiter.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_utf8.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_tokenize.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_roundtrip.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_parity.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_semicolon_field_strict.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_gil_release.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_string_interning.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_coordinates.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_bindings.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_sf.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_parse.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_memory.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression creating build/bdist.linux-loongarch64/wheel/xcif/benchmarks copying build/lib/xcif/benchmarks/run_benchmarks.py -> build/bdist.linux-loongarch64/wheel/./xcif/benchmarks copying build/lib/xcif/benchmarks/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif/benchmarks copying build/lib/xcif/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif copying build/lib/xcif/run_tests.py -> build/bdist.linux-loongarch64/wheel/./xcif creating build/bdist.linux-loongarch64/wheel/cootbx copying build/lib/cootbx/ligand_checklist.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/xmlrpc_server.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/hydrogens_button.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/view_refinement.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/simple_zoom_list.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/validation_lists.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/interactive_edit.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/watch_file.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cootbx creating build/bdist.linux-loongarch64/wheel/fable copying build/lib/fable/intrinsics.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/simple_compilation.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./fable creating build/bdist.linux-loongarch64/wheel/fable/command_line copying build/lib/fable/command_line/split.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/show_calls.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/insert_write_at_start_of_each_procedure.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/fem_include_search_paths.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/read.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/cout.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/tokenization.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_read.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/__init__.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/equivalence.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/read.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/utils.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_cout_compile.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_equivalence.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/run_tests.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_cout.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/cout.py -> build/bdist.linux-loongarch64/wheel/./fable creating build/bdist.linux-loongarch64/wheel/smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/refinement creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/site.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/hydrogens.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/all.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/rigid.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/fpfdp.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/all.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/adp.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_occupancies.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_disorder.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_same_group.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_rigid.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_direction.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/occupancy.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/origin_fixing_restraints.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/adp_restraints.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/least_squares.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement creating build/bdist.linux-loongarch64/wheel/smtbx/masks copying build/lib/smtbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/masks creating build/bdist.linux-loongarch64/wheel/smtbx/absolute_structure copying build/lib/smtbx/absolute_structure/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/absolute_structure creating build/bdist.linux-loongarch64/wheel/smtbx/command_line copying build/lib/smtbx/command_line/absolute_structure.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/anom_refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/masks.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/benchmark_refinement.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/development.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/regression creating build/bdist.linux-loongarch64/wheel/smtbx/regression/test_data copying build/lib/smtbx/regression/test_data/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression/test_data copying build/lib/smtbx/regression/tst_commandline_anomrefine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression copying build/lib/smtbx/regression/tst_commandline_refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression copying build/lib/smtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression creating build/bdist.linux-loongarch64/wheel/smtbx/stl copying build/lib/smtbx/stl/map.py -> build/bdist.linux-loongarch64/wheel/./smtbx/stl copying build/lib/smtbx/stl/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/stl copying build/lib/smtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./smtbx copying build/lib/smtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/ab_initio copying build/lib/smtbx/ab_initio/charge_flipping.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio copying build/lib/smtbx/ab_initio/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio creating build/bdist.linux-loongarch64/wheel/smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_charge_flipping.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests creating build/bdist.linux-loongarch64/wheel/smtbx/array_family copying build/lib/smtbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/array_family creating build/bdist.linux-loongarch64/wheel/smtbx/structure_factors copying build/lib/smtbx/structure_factors/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/structure_factors creating build/bdist.linux-loongarch64/wheel/smtbx/structure_factors/direct copying build/lib/smtbx/structure_factors/direct/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/structure_factors/direct copying build/lib/smtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/source_generators copying build/lib/smtbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./smtbx/source_generators copying build/lib/smtbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/source_generators copying build/lib/smtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/fast_linalg copying build/lib/fast_linalg/__init__.py -> build/bdist.linux-loongarch64/wheel/./fast_linalg creating build/bdist.linux-loongarch64/wheel/ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/tst.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/copy_files.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx creating build/bdist.linux-loongarch64/wheel/wxtbx copying build/lib/wxtbx/segmentedctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/mtz_dump.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/bitmaps.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/layout.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/reports copying build/lib/wxtbx/reports/pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/blast.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/info_panels.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/listeditor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/checklistctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/command_line copying build/lib/wxtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/loggraph.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_editor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/inspect_r_free_flags.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/plot_anomalous_scattering.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/xtriage.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/anomalous_differences_histogram.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/wxpython.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/show_file_info.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_statistics.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/windows.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/icons.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/pdb_editor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/anomalous_scattering.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/misc_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/metallicbutton.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/xtriage.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/browser.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/polygon.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/sequence_view.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/tables.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/wx4_compatibility.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/plots copying build/lib/wxtbx/plots/molprobity.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/emringer.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/monitor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/path_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/app.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice_multi.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/boolctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tribool.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tree.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floats.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/misc_ctrls.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floatctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/symop.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strings.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/numbers.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/space_group.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/ints.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/path.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/array_label.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/text_base.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/intctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/unit_cell.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/simple_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/symmetry_dialog.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/adp_statistics.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/process_control.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/errors.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/heavy_atoms.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/custom_restraints.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/qstat_view.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/ensemble_validation.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/polygon_db_viewer.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/xray copying build/lib/cctbx/xray/scatterer.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/target_functors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/targets copying build/lib/cctbx/xray/targets/r1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_r1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/observation_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/observations copying build/lib/cctbx/xray/observations/tst_observations.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/observations/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradient_flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_base.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/algorithm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/global_counters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_direct.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/misc.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors creating build/bdist.linux-loongarch64/wheel/cctbx/masks copying build/lib/cctbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/masks copying build/lib/cctbx/r_free_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/command_line copying build/lib/cctbx/command_line/structure_factor_timings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_scale.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/space_group_info.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cod_select_and_pickle.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cctbx_test_nightly.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/brehm_diederichs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_join.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/euclidean_model_matching.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/precession_view.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/version.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/segment_and_split_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/wavelength_units.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/auto_sharpen.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/find_reticular_twin_laws.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/diffuse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/eltbx.show_fp_fdp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/form_factor_query.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx copying build/lib/cctbx/sgtbx/sys_abs_equiv.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/sub_lattice_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/plane_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_pg_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/harker.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx/direct_space_asu creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/reference_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/rational_matrices_point_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/show_cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/bravais_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/literal_description.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_twin_laws.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/pointgroup_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/symbol_confidence.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx creating build/bdist.linux-loongarch64/wheel/cctbx/covariance copying build/lib/cctbx/covariance/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/covariance creating build/bdist.linux-loongarch64/wheel/cctbx/geometry copying build/lib/cctbx/geometry/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry creating build/bdist.linux-loongarch64/wheel/cctbx/maptbx copying build/lib/cctbx/maptbx/refine_scales_errors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/real_space_refinement_simple.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/resolution_from_map_and_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/box.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx creating build/bdist.linux-loongarch64/wheel/cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_qmap_02.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_example.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/compute_tables.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/bcr.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/qmap.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_two_atoms.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_adp_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/tst_mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_asymmetric_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_real_space_refinement_simple.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/fsc_curve.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_docking.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_target_and_gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_refinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_curves.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/segment_and_split_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_ccp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_bcr.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/auto_sharpen.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/refine_sharpening.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mem.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/map_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_loft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_peak_volume_estimate.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx creating build/bdist.linux-loongarch64/wheel/cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_asu_clusters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_site_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_krivy_gruber.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_french_wilson.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wavelength_units.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_merge_equivalents.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_prepare_map_for_docking.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_show_cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_web_change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization_failure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_create_models_or_maps.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_double_step_filtration.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints_cartesian.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_fast_gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_f_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pair_asu_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_target_functors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications_rm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_coordination_sequences.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_expand_to_p1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_twin_target.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_statistics_graphs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sf_low_res_accuracy.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_find_best_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_data_manipulation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity_allsym.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sphericity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sampled_model_density.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_amplitude_normalisation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_is_periodic.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_harker.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_diffuse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wilson_plot.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pointgroup_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_close_packing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_loc_res.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_pickling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_r_free_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_denominators.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fast_nv1995.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_aniso_restraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_math_module.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_triplet_generator.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_lookup_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reciprocal_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fcalc_fft_stability.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_box.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_emma.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_niggli_reduction_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_scaling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_refine_xray_curvs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_fft_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grouped_data.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression creating build/bdist.linux-loongarch64/wheel/cctbx/web copying build/lib/cctbx/web/dispatcher.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web creating build/bdist.linux-loongarch64/wheel/cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jvx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/guide_to_notation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_index.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/web_links.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/change_setting.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/iotbx_cif_validate.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/frac_cart.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/explore_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/libtbx_help.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/change_hand.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/browse_settings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/shelx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors_pdb.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/emma.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/multiple_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/all_axes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/wyckoff.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/cgi_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/replay.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/io_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web creating build/bdist.linux-loongarch64/wheel/cctbx/development copying build/lib/cctbx/development/debug_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/approx_amplitude_vs_resolution.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/make_cns_input.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_epsilon.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/make_settings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/fmt_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/github.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/electron_density_sampling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/create_models_or_maps.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/cns_density_modification.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/random_structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_hl.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/direct_or_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx76.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/space_group_option_parser.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/structure_factor_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/translation_search.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/macro_mol copying build/lib/cctbx/macro_mol/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/macro_mol copying build/lib/cctbx/macro_mol/rotation_parameters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/macro_mol creating build/bdist.linux-loongarch64/wheel/cctbx/omz copying build/lib/cctbx/omz/eval_iso_vs_refined.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_bfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_select_and_pickle.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/bfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/pdb_dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tardy_adaptor.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cif_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz creating build/bdist.linux-loongarch64/wheel/cctbx/examples copying build/lib/cctbx/examples/space_group_matrices.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/list_non_principal_continuous_shifts.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/adp_symmetry_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_minimizers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/hirshfeld_test.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/sub_group_graph.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_puckers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples creating build/bdist.linux-loongarch64/wheel/cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_derivatives_4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/fft_map_electron_density_around_atom.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_transform.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/view_fft_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_consistency_checks.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/neutron_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/f_model_example.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_common_sets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/change_hand_p31.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_primitive_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_partial_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/lebedev_2005_perturbation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_refinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/analyze_adp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_space_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_f_calc.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_distances_using_cpp_objects.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/symops_530.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/all_axes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/convert_ccp4_symop_lib.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/map_skewness.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/reduced_cell_two_folds.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/location_part.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/quartz_structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/space_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/steve_collins.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/maximum_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/getting_started.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples creating build/bdist.linux-loongarch64/wheel/cctbx/examples/merging copying build/lib/cctbx/examples/merging/test1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_levenberg_sparse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_utilities.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/sigma_correction.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/task4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging creating build/bdist.linux-loongarch64/wheel/cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/join.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/scale.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/show_results.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/tst_permutations.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_cc_half.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_subset.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/tst_structure_factor_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/euclidean_model_matching.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/adptbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/dmtbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx copying build/lib/cctbx/eltbx/attenuation_coefficient.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/e_scattering.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/henke.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/van_der_waals_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/e_scattering_plots.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_approx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_io.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_kissel.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/rez_rez_grant.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/combine_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_cross_validation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_section61_io.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/format_gaussian_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/hydrogen_plots.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/xray_scattering/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/read_custom_scattering_dict.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/chemical_elements.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/fp_fdp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/sasaki.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/icsd_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/wavelengths.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/gaussian_fit.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/tiny_pse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/covalent_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/neutron.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/formula.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/run_examples.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/math_module.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/french_wilson.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/neutron copying build/lib/cctbx/neutron/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/neutron copying build/lib/cctbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/miller copying build/lib/cctbx/miller/tst_reindexing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/reindexing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/tst_map_to_asu_isym.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/display.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/anharmonic.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/symmetry_search.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/crystal copying build/lib/cctbx/crystal/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/direct_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/super_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/coordination_sequences.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_super_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/close_packing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/reindex.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/find_best_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal creating build/bdist.linux-loongarch64/wheel/cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/energies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints creating build/bdist.linux-loongarch64/wheel/cctbx/array_family copying build/lib/cctbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./cctbx/array_family copying build/lib/cctbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/array_family creating build/bdist.linux-loongarch64/wheel/cctbx/source_generators creating build/bdist.linux-loongarch64/wheel/cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators copying build/lib/cctbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators creating build/bdist.linux-loongarch64/wheel/cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/lbfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/linking_class.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/standard_cif_links.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/auto_linking_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_motif.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/base_geometry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/energies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_proxy_registry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_angle_derivs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/distance_least_squares.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/multipolar.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/uctbx copying build/lib/cctbx/uctbx/reduction_base.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx creating build/bdist.linux-loongarch64/wheel/cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/determine_unit_cell/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/krivy_gruber_1976.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973_table_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx creating build/bdist.linux-loongarch64/wheel/cctbx/merging copying build/lib/cctbx/merging/brehm_diederichs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/merging copying build/lib/cctbx/merging/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/merging copying build/lib/cctbx/crystal_orientation.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/iotbx copying build/lib/iotbx/map_model_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/fullprof copying build/lib/iotbx/fullprof/write_pcr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/read_pcr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/ranges.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/cif copying build/lib/iotbx/cif/cod_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/model.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraints.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/builders.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/geometry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/citations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/errors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraint_file_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/validation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/crystal_symmetry_from_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/mtz copying build/lib/iotbx/mtz/tst_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_miller_dict.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_dano.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/extract_from_symmetry_lib.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/crystal_symmetry_from_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/phases.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/dsn6 copying build/lib/iotbx/dsn6/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dsn6 copying build/lib/iotbx/dsn6/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dsn6 copying build/lib/iotbx/csv_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/scalepack copying build/lib/iotbx/scalepack/merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/no_merge_original_index.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/space_group_dictionary.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_no_merge_original_index.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/option_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/command_line copying build/lib/iotbx/command_line/crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_distances.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.sdb_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_accumulation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/sort_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_diff.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_miller_arrays.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/blast_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/flip_symmetric_amino_acids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_comparison.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.join_fragment_files.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.insert_scale_records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtrix_reconstruction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/build_phil_cache.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/get_pubmed_citation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cbf_read.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_systematic_absences.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/unique_with_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_split_models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_fasta.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dano_as_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/csv_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/export_scalepack_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_show_connectivity.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif_as_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/biomt_reconstruction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/emma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dtrek.to_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_get_citation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/explore_metric_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_add_conformations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_as_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/french_wilson.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.dump_as_python.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.b_factor_stats.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_completion_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz.dump.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/simple_map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/patterson_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/poscar_as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.validate.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/symmetry_search.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reindex.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_converter.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/xplor.map.show_summary.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.reflection_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/distance_least_squares.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/effective_resolution.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.print_sequence.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/detector_image_as_png.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line creating build/bdist.linux-loongarch64/wheel/iotbx/data_manager copying build/lib/iotbx/data_manager/sequence.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/model.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/real_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/ncs_spec.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/common.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/miller_array.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/restraint.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/table_one.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/regression copying build/lib/iotbx/regression/tst_all_chain_ids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_wrapping.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_fetch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_simple_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cli_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_show_systematic_absences.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_link_records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_miller_sort_asu.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_bioinformatics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_extract_xtal_data.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_poscar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reindex.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_as_pdb_1atom.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_csv_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_restraints_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_input.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_generate_n_char_string.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_4.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_inputs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_xray_scale.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression creating build/bdist.linux-loongarch64/wheel/iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_without_validation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_user_selections.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/tst_simple_map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_cells.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_segids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_fasta.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_export_scalepack_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_multimodel.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_atom_selections_10k.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_sort_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_pdb_v3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_add_conformations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_id_str.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_wildcard.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mrc_io.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_patterson.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_call_consistency.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_4.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_group_rounding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_examples.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phases.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mtz_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_altlocs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_plots.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_copy_select.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_selected_hierarchy_flip.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/nucleic_acid_codes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_atom_sort.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/crystal_symmetry_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection_string.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/fetch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rcsb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/amino_acid_codes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_rna_dna_atom_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_name_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/experiment_type.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_name_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/mmcif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hybrid_36.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_aa_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_290_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/secondary_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/aa_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/cryst1_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/web_service_api.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/download.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rna_dna_detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/misc_records_output.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_2_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_rna_dna_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_tls.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_3_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdbe.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdb_v3_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb creating build/bdist.linux-loongarch64/wheel/iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/tst_remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/tst_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb creating build/bdist.linux-loongarch64/wheel/iotbx/xds copying build/lib/iotbx/xds/xds_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/gain_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xds_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xparm.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/integrate_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/crystal_symmetry_from_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/spot_xds.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/read_ascii.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/geometry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/blank_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/correction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds creating build/bdist.linux-loongarch64/wheel/iotbx/detectors copying build/lib/iotbx/detectors/raxis_nonsquare.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_py_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_detectors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/generic_detector.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/edf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cspad_detector_formats.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/image_from_http_request.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxis.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxisbase.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/bruker.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/npy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/active_area_filter.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/url_support.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/macscience.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_raxis2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/detectorbase.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/beam_center_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/noir.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_adsc.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/mar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_debug_write.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/saturn.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors creating build/bdist.linux-loongarch64/wheel/iotbx/detectors/context copying build/lib/iotbx/detectors/context/spot_xy_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/config_detector.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/camera_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation_max_iv_trial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/adsc_module.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors creating build/bdist.linux-loongarch64/wheel/iotbx/detectors/util copying build/lib/iotbx/detectors/util/filters.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/util/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/tst_cbf_comp_read_meth.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/dtrek.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/hamamatsu.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_slice.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/marIP.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_mar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/map_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/map_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/tables.py -> build/bdist.linux-loongarch64/wheel/./iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/PrettyPrint creating build/bdist.linux-loongarch64/wheel/iotbx/kriber copying build/lib/iotbx/kriber/strudat.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/tst_strudat.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber creating build/bdist.linux-loongarch64/wheel/iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/simple_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/xplor copying build/lib/iotbx/xplor/tst_xplormap.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/crystal_symmetry_from_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/mtrix_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/examples copying build/lib/iotbx/examples/libtbx_phil_examples.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/prepare_model_for_rsr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_shake.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/direct_methods_light.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_split_chains.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdbx_mmcif_tutorial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/tst_mtz_free_flipper.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_convert_free_to_work.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_free_flipper.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_symmetry_copies.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples creating build/bdist.linux-loongarch64/wheel/iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_to_map_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples creating build/bdist.linux-loongarch64/wheel/iotbx/dtrek copying build/lib/iotbx/dtrek/reflnlist_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/crystal_symmetry_from_ref.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/dtrek_symmetry_dict.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/extract_xtal_data.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pdb_info.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/homologues.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/xmlbuild.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ncbi_blast_xml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pubmed.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/alignment_as_hsearch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/local_blast.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics creating build/bdist.linux-loongarch64/wheel/iotbx/ncs copying build/lib/iotbx/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ncs copying build/lib/iotbx/wildcard.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_sdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/index_fobs_sigma_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/miller_array.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/reflection_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/tst_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/space_group_symbols.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/pdb_remarks.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/pymol.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/builders.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/logfiles.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/format.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/cif_mtz_data_labels.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/cli_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/programs copying build/lib/iotbx/programs/unique_with_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs creating build/bdist.linux-loongarch64/wheel/iotbx/solve copying build/lib/iotbx/solve/crystal_symmetry_from_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/solve/fpfm_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/solve/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/shelx copying build/lib/iotbx/shelx/parsers.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/hklf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_lex_parse_build.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tokens.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fcf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_hklf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_fvar_encoding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/lexer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/write_ins.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/errors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/crystal_symmetry_from_ins.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fvar_encoding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/builders_depending_on_smtbx.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/mrcfile copying build/lib/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mrcfile copying build/lib/iotbx/mrcfile/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mrcfile copying build/lib/iotbx/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/data_plots.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/poscar.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_converter.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/gui_tools copying build/lib/iotbx/gui_tools/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/cif_conversions.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/import_data_and_flags.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/reflections.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/self_match.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/sample.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/generate_all.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/applications copying build/lib/spotfinder/applications/practical_heuristics.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/stats_distl.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/image_viewer.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications creating build/bdist.linux-loongarch64/wheel/spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice2.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/spotreporter.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx creating build/bdist.linux-loongarch64/wheel/spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_run3.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_phil.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/correction_vector_plot.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/wrappers.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/signal_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications creating build/bdist.linux-loongarch64/wheel/spotfinder/servers copying build/lib/spotfinder/servers/specific_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/general_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/thin_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/bcsb_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/multipart_encoder.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_bcsb.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/pilatus_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/adsc_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_client_push.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_utils.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_dials.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers creating build/bdist.linux-loongarch64/wheel/spotfinder/command_line copying build/lib/spotfinder/command_line/thin_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/image_viewer.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/find_active_area.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/sweep_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/signal_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/exception.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/dxtbx_toolbox creating build/bdist.linux-loongarch64/wheel/spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/close_spots_detail.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/core_toolbox creating build/bdist.linux-loongarch64/wheel/spotfinder/diffraction copying build/lib/spotfinder/diffraction/imagefiles.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/geometry.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/math_support copying build/lib/spotfinder/math_support/sphere_formulae.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/math_support copying build/lib/spotfinder/math_support/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/math_support creating build/bdist.linux-loongarch64/wheel/spotfinder/array_family copying build/lib/spotfinder/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/array_family copying build/lib/spotfinder/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/array_family copying build/lib/spotfinder/run_tests.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/apps copying build/lib/rstbx/apps/spot_markup.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps creating build/bdist.linux-loongarch64/wheel/rstbx/apps/stills copying build/lib/rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/util.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/simple_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/stills_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/dual_resolution_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps copying build/lib/rstbx/apps/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps copying build/lib/rstbx/apps/slip_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps creating build/bdist.linux-loongarch64/wheel/rstbx/simulation copying build/lib/rstbx/simulation/constants.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_pdf.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/tst_xfel1_simple.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_utils.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation creating build/bdist.linux-loongarch64/wheel/rstbx/phil copying build/lib/rstbx/phil/scope.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/phil_preferences.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/preferences.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil creating build/bdist.linux-loongarch64/wheel/rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/fit_distribution.py -> build/bdist.linux-loongarch64/wheel/./rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/outlier_spots creating build/bdist.linux-loongarch64/wheel/rstbx/command_line copying build/lib/rstbx/command_line/example_viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.explore_completeness.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.create.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/slip_viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.solver.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.wx_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line creating build/bdist.linux-loongarch64/wheel/rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/ring_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/pyslip.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/tile_generation.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/score_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_viewer_image_factory.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/uc_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/calibration_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer creating build/bdist.linux-loongarch64/wheel/rstbx/detectors copying build/lib/rstbx/detectors/silicon.py -> build/bdist.linux-loongarch64/wheel/./rstbx/detectors copying build/lib/rstbx/detectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/detectors creating build/bdist.linux-loongarch64/wheel/rstbx/symmetry copying build/lib/rstbx/symmetry/sgtbx_adaptor.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry creating build/bdist.linux-loongarch64/wheel/rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/parameter_reduction.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/g_gradients.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry copying build/lib/rstbx/symmetry/subgroup.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry creating build/bdist.linux-loongarch64/wheel/rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_validate.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2a.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions_idx.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/compare_mosflm_xds.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx creating build/bdist.linux-loongarch64/wheel/rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/detector.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/instrument_specifics.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/tst_detector_model.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/ersatz_misset.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx creating build/bdist.linux-loongarch64/wheel/rstbx/dps_core copying build/lib/rstbx/dps_core/cell_assessment.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/tst_iotbx_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/basis_choice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/lepage.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/zuoreduction.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/constrainment.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/sampling.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core creating build/bdist.linux-loongarch64/wheel/rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_procedure.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/lattice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/nearest_neighbor.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/force_cell.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/basis_choice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/tools.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/test_dps.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_detection.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/sampling.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api creating build/bdist.linux-loongarch64/wheel/rstbx/indexing copying build/lib/rstbx/indexing/tst_auto_monoscan.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/do_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/tst_dataset1.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing creating build/bdist.linux-loongarch64/wheel/rstbx/new_horizons copying build/lib/rstbx/new_horizons/index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/speckfinder.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/stats_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/spot_shape.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/pixel_spread.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/oscillation_shots.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons creating build/bdist.linux-loongarch64/wheel/rstbx/diffraction creating build/bdist.linux-loongarch64/wheel/rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/tst_ewald_sphere.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_partial_derivatives.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_predict.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/simage copying build/lib/rstbx/simage/run_spotfinder.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/refine_uc_cr.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/integrate_crude.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/tst.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/run_labelit_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/explore_completeness.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/create.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/solver.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/wx_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage creating build/bdist.linux-loongarch64/wheel/rstbx/viewer copying build/lib/rstbx/viewer/results_base.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/dataset.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/processing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/tst.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/drivers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/pixels3d.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/controls.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_wrap.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/indexing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer creating build/bdist.linux-loongarch64/wheel/rstbx/array_family copying build/lib/rstbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./rstbx/array_family copying build/lib/rstbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/array_family copying build/lib/rstbx/utils.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/tst_coordinate_frame_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx creating build/bdist.linux-loongarch64/wheel/rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/tst_sublattice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/change_basis.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support creating build/bdist.linux-loongarch64/wheel/rstbx/dials_core copying build/lib/rstbx/dials_core/integration_core.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dials_core copying build/lib/rstbx/dials_core/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dials_core copying build/lib/rstbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/bandpass copying build/lib/rstbx/bandpass/simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bandpass copying build/lib/rstbx/bandpass/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bandpass creating build/bdist.linux-loongarch64/wheel/cma_es copying build/lib/cma_es/cma_es_interface.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/tst_cma_es.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/__init__.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cma_es creating build/bdist.linux-loongarch64/wheel/cbflib_adaptbx creating build/bdist.linux-loongarch64/wheel/cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/dump.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/copy_files.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/exercise_compression.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx creating build/bdist.linux-loongarch64/wheel/libtbx copying build/lib/libtbx/containers.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pyplot.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_unique_dirs.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_word_index_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/assert_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_fully_buffered_timeout.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/cpp_function_name.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/program_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_python_code_parsing.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/phil copying build/lib/libtbx/phil/interface.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tokenizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/command_line.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_experimental.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/experimental.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/gui_objects.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/parser.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_tokenizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_interface.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/tst_easy_mp_multicore.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/clear_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/console_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/start_print_trace.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_representation.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_citations.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/complex_math.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/runtime_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_topological_sort.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/word_index_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/dlite.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/option_parser.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/thread_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/command_line copying build/lib/libtbx/command_line/show_module_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_binary_bundle.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/env_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_env.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/prime_factors_of.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_sys_executable.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_host_and_user.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clear_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_sphinx_html.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_available_slots.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_not_show_diff.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_include_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_options.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_dist_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/add_docstrings_with_ai.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/printenv.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_but_no_repr.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/line_count.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_process.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/extract_code_from_txt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/nequal.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_python.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/wait_for_file.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_commands.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_tree.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/path_utility.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numpy_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/check_libcpp.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/parallel_simple.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/cctbx_chunk.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_contains_strings.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_repository_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/scons.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_mac_app.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_source_files_sorted_by_size.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_full_command_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_tests_parallel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_windows_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/epydoc_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_number_of_processors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_unzipsfx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remote_processing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sphinx_build.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_pdb_mmcif_problems.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_ext.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_reserved_names.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/raise_exception_for_testing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_bin_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_untested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bundle_as_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_selfx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_pythonpath.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/resource_monitor_plot.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_date_and_time.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_dist.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_in_repositories.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_line_count.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_all_on_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/py_compile_all.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/analyse_code_comments.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install_conda.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clean_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_under_build.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/easy_qsub.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/help.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/ipython_shell_start.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_install_script_bat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_ends_with.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/git_avoid_merges.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_lib_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_old_style_classes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/reindent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_pickled_function.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_modules.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports_crude.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_environ_usage.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_qstat_counts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_variable_names.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/dtrace.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/any2unix.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numeric_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/seconds_since_the_epoch.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line creating build/bdist.linux-loongarch64/wheel/libtbx/sphinx copying build/lib/libtbx/sphinx/pubmed.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/python_string.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx creating build/bdist.linux-loongarch64/wheel/libtbx/scheduling copying build/lib/libtbx/scheduling/mp_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/job_scheduler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/shared_resource.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/result.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/thread_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/socket_queue.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/process_pool.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/file_queue.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/stacktrace.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/mainthread.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/parallel_for.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/philgen.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/cluster_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/cli.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_runtime_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/subprocess_with_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/object_oriented_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/bundle copying build/lib/libtbx/bundle/copy_all.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_runtime_sources.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_bat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_build_libtbx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_csh.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/easy_mp.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/program_utils copying build/lib/libtbx/program_utils/result.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/statistics_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/tst_containers.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/introspection.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/development copying build/lib/libtbx/development/timers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/xcode_build_phase.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/except_Exception.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/xmlrpc_server_example.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/topological_sort.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_math_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/env_config.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/server copying build/lib/libtbx/server/StartServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/SocketServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileSocket.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileClient.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/math_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pkg_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/forward_compatibility.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/crossmingw.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/find_reference_cycles.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_xmlrpc_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/configure.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/file_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/clusterTests.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_thread_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/python_code_parsing.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/smart_open.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_pickle.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/callbacks.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/version.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling_helpers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/sge_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/tst.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/pbs_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/remote.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/generic.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/lsf.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils creating build/bdist.linux-loongarch64/wheel/libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/transfer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/util.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/status.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/polling.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/submission.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/errors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/looping.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/communication.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/citations.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/test_utils copying build/lib/libtbx/test_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/test_utils/parallel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/tst_mahalanobis.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_profile.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pyframe.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/auto_build copying build/lib/libtbx/auto_build/write_gui_dispatcher_include.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/regenerate_module_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_base_packages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/plus_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/installer_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_app.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/make_bundle.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_pkg.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/package_defs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_conda.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/setup_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_distribution.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/rpath.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build creating build/bdist.linux-loongarch64/wheel/libtbx/langchain copying build/lib/libtbx/langchain/phenix_knowledge.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/hypothesis_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_registry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_inspector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/template_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rate_limit_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/nl_to_phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/format_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/dry_run_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/docs_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_engine.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_history.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/pattern_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_log.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/advice_preprocessor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_nodes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rules_selector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phenix_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metric_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/thinking_agent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_logic_doc.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_safety_docs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/intent_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/sanity_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/config_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/contract.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/gate_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metrics_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/transport.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/log_section_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/api_client.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phil_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/tst_agent_enhancements.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/planner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/structure_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/failure_diagnoser.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/yaml_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/kb_tags.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_formatter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_metadata.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/best_files_tracker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/display_data_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/strategy_memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/placement_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/plan_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/perceive_checks.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_postprocessor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/core_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/mtz_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/phenix_refine.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/registry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/run_build_db.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/text_processing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/query.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/run_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/yaml_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/thinking_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts_hybrid.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/program_registration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/explanation_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/summary_display.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/phenix_programs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_template_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/api_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/metric_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/kb_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/html_report_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/examples copying build/lib/libtbx/langchain/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/examples creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/core copying build/lib/libtbx/langchain/core/llm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/types.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/strategies creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/agent_session_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/state_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/summarizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/log_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/document_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/retriever.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/vector_store.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/run_inspect_db.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain copying build/lib/libtbx/langchain/run_query_docs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_contract_compliance.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase4_history_flags.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v112_13_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_directives.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase5_error_classification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_scenario_tracer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_action_item_1.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/integration/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/test_api_keys.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_intent_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dry_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_new_programs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_backward_compat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_integration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_structure_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase8_command_building.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_old_client_compat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_state_serialization.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_registration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_n_bugs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/audit_phase_rename.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_fix.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_command_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phaser_multimodel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_summary.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_api_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_audit_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_transport.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_decision_flow.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directives_integration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metric_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorization.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sanity_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_copies_tracking.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_file_overrides.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_docs_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_strategy_memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_advice_preprocessing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autosol_bugs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metrics_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_codes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_langchain_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_best_files_tracker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_display_data_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase0_static_audit.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/run_all_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_config.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_defense.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_summary_display.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_gate_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_system.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validation_history.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_log_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fix_verification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_history_analysis.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/analyze_tutorial_runs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_pattern_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_agent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_bug5.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_shared_code_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_explanation_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/tst_easy_mp_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_object_oriented_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/load_env.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/log.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_scheduling.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_easy_pickle.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_easy_mp.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/str_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/code_analysis.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_binary_search.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/metric_prefixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/wingide.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_program_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/binary_search.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_find_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/xmlrpc_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/path.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/mpi4py.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/simplexml.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_retry.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/progress.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/objgraph.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/table_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/resource_monitor.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_str_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_dlite.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/cluster.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_add_docstrings_with_ai.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/try_hello_world_c.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/simtbx creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg copying build/lib/simtbx/diffBragg/mpi_logger.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/psf.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/prep_stage2_input.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/base_refiner.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/stage_two_refiner.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/parameters.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/geometry.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/device.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/attr_list.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/ensemble_refine_launcher.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/parameter_errors.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_ensemble_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/phil.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_io.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/stage_two_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg creating build/bdist.linux-loongarch64/wheel/simtbx/modeling copying build/lib/simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/forward_models.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/predictions.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling creating build/bdist.linux-loongarch64/wheel/simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_threads.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_init.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_beam.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gauss_argchk.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_multisource_background.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_input.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_crystal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/anisotropic_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/sim_data.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg creating build/bdist.linux-loongarch64/wheel/simtbx/gpu copying build/lib/simtbx/gpu/tst_gpu_multisource_background.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_shoeboxes.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_exafel_api.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu creating build/bdist.linux-loongarch64/wheel/simtbx/kokkos copying build/lib/simtbx/kokkos/tst_kokkos_lib.py -> build/bdist.linux-loongarch64/wheel/./simtbx/kokkos copying build/lib/simtbx/kokkos/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/kokkos copying build/lib/simtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx copying build/lib/simtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./simtbx creating build/bdist.linux-loongarch64/wheel/simtbx/pixel copying build/lib/simtbx/pixel/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/pixel creating build/bdist.linux-loongarch64/wheel/omptbx copying build/lib/omptbx/tst.py -> build/bdist.linux-loongarch64/wheel/./omptbx copying build/lib/omptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./omptbx creating build/bdist.linux-loongarch64/wheel/gltbx copying build/lib/gltbx/gl_managed.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_functions_bpl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/images.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_cube.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_motion_on_tab.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewers_images.py -> build/bdist.linux-loongarch64/wheel/./gltbx creating build/bdist.linux-loongarch64/wheel/gltbx/command_line copying build/lib/gltbx/command_line/try_imports.py -> build/bdist.linux-loongarch64/wheel/./gltbx/command_line copying build/lib/gltbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./gltbx/command_line copying build/lib/gltbx/wx_scene.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/viewer_utils.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/util.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_leapmotion.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/quadrics.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_example.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_ellipsoids.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_fonts_ucs_cpp.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/extract_opengl_specs.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/gl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_fonts.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/fonts.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/glu.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_defines_bpl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_viewer_utils.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_ellipsoids_test.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./gltbx creating build/bdist.linux-loongarch64/wheel/serialtbx creating build/bdist.linux-loongarch64/wheel/serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/util.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/max_like.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation creating build/bdist.linux-loongarch64/wheel/serialtbx/detector copying build/lib/serialtbx/detector/jungfrau.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/rayonix.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/cspad.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/xtc.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector creating build/bdist.linux-loongarch64/wheel/serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/generic_detector.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/cspad_detector.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/metrology.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx creating build/bdist.linux-loongarch64/wheel/serialtbx/util copying build/lib/serialtbx/util/construct_frame.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/energy_scan_notch_finder.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/time.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util creating build/bdist.linux-loongarch64/wheel/scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/serialization copying build/lib/scitbx/serialization/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/serialization copying build/lib/scitbx/cubicle_neighbors.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/r3_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree copying build/lib/scitbx/suffixtree/single.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/tst_single.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/test creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree creating build/bdist.linux-loongarch64/wheel/scitbx/command_line copying build/lib/scitbx/command_line/show_sizes.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/apply_tapenade_hints.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/generate_error_h.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/histogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/show_exp_times.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/unicode_examples.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/smoothing.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/regular_grid_on_unit_sphere.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/linalg copying build/lib/scitbx/linalg/svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/eigensystem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/linalg/boost_python copying build/lib/scitbx/linalg/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/boost_python copying build/lib/scitbx/linalg/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_dsyev.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_cholesky.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_matrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_eigensystem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/householder.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/stdlib copying build/lib/scitbx/stdlib/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stdlib creating build/bdist.linux-loongarch64/wheel/scitbx/misc copying build/lib/scitbx/misc/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/misc copying build/lib/scitbx/differential_evolution.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/restraints.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/line_search copying build/lib/scitbx/line_search/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/line_search copying build/lib/scitbx/minimizers.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/matrix copying build/lib/scitbx/matrix/row_echelon.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix copying build/lib/scitbx/matrix/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix creating build/bdist.linux-loongarch64/wheel/scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_row_echelon.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_householder.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/cross_entropy.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/examples copying build/lib/scitbx/examples/minimizer_comparisons.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/immoptibox_ports.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_recipe.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_grid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/chebyshev_lsq_example.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_array_loops.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/integrating_a_weighted_sinc_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/principal_axes_of_inertia.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/functions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples creating build/bdist.linux-loongarch64/wheel/scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/silver.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/rigid_body_refinement_core.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples creating build/bdist.linux-loongarch64/wheel/scitbx/iso_surface copying build/lib/scitbx/iso_surface/tst_iso_surface.py -> build/bdist.linux-loongarch64/wheel/./scitbx/iso_surface copying build/lib/scitbx/iso_surface/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/iso_surface copying build/lib/scitbx/simplex.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/error copying build/lib/scitbx/error/tst_error.py -> build/bdist.linux-loongarch64/wheel/./scitbx/error copying build/lib/scitbx/error/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/error creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/tests creating build/bdist.linux-loongarch64/wheel/scitbx/sparse creating build/bdist.linux-loongarch64/wheel/scitbx/sparse/boost_python copying build/lib/scitbx/sparse/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/boost_python copying build/lib/scitbx/sparse/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse creating build/bdist.linux-loongarch64/wheel/scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_sparse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_lu_factorization.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests creating build/bdist.linux-loongarch64/wheel/scitbx/random creating build/bdist.linux-loongarch64/wheel/scitbx/random/boost_python copying build/lib/scitbx/random/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/boost_python copying build/lib/scitbx/random/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random creating build/bdist.linux-loongarch64/wheel/scitbx/random/tests copying build/lib/scitbx/random/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/tests copying build/lib/scitbx/random/tests/tst_random.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/tests copying build/lib/scitbx/direct_search_simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/lbfgsb.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_func_free_line_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs creating build/bdist.linux-loongarch64/wheel/scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/twisted_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/run.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/tst_curvatures.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_lbfgs_fem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs creating build/bdist.linux-loongarch64/wheel/scitbx/wigner copying build/lib/scitbx/wigner/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/wigner copying build/lib/scitbx/wigner/tst_wigner3j.py -> build/bdist.linux-loongarch64/wheel/./scitbx/wigner creating build/bdist.linux-loongarch64/wheel/scitbx/stl copying build/lib/scitbx/stl/tst_set.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/vector.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_map.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/set.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/map.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_vector.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl creating build/bdist.linux-loongarch64/wheel/scitbx/boost_python copying build/lib/scitbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/boost_python creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_molecules.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_molecules.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_singular.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_simulation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_free_motion.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/body_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/spatial_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/make_bundles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/wx_tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_energy_plots.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/dtmin copying build/lib/scitbx/dtmin/realsymmetricpseudoinverse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/twisted_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/bounds.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin creating build/bdist.linux-loongarch64/wheel/scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_booth.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/refinebase.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/min_logging.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/optional.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/compulsory.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/auxiliary.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/reparams.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/minimizer.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/genetic_algorithm_with_mp.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/fftpack.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/math copying build/lib/scitbx/math/so3_lie_algebra.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/curve_fitting.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/incremental_SO3_sampling.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/sphere_sphere_intersection.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_undirected_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/undirected_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/distributions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike_mom.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/cubic_spline.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/zernike_align_fft.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/superpose.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_bessel_zeros.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_2d_zernike.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/dev copying build/lib/scitbx/math/dev/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/dev copying build/lib/scitbx/math/clustering.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/scale_curves.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/spe.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/chebyshev_lsq_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/lefebvre.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_240_21.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_100_13.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_quadratic_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/boost_python copying build/lib/scitbx/math/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/boost_python copying build/lib/scitbx/math/tst_multivariate_moments.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900_ylm.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/multiple_superposition.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gumbel.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/besselk.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/sieve_of_eratosthenes.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/periodogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/breakpoint.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/euler_angles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_so3_lie_algebra.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_peak.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/farey.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/minimum_covering_ellipsoid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/erf copying build/lib/scitbx/math/erf/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/erf copying build/lib/scitbx/math/fliege_mayer_400.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/tests copying build/lib/scitbx/math/tests/tst_periodogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_euler_angles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_curve_fitting.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_similarity_indices.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_r3_rotation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_g_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_resample.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_line_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_math.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_angle_derivative.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_tetrahedron.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_exp_functions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_weighted_correlation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_halton.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_bessel.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_superpose.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_peak.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_orthonormal_basis.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_quadrature.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gcd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_cubic_equation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_dmatrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_quadratic_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_clustering.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/minpack.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/slatec copying build/lib/scitbx/slatec/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/slatec creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns_solving.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/benchmarks copying build/lib/scitbx/lstbx/benchmarks/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/benchmarks creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/tst_normal_equations.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/test_problems.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests creating build/bdist.linux-loongarch64/wheel/scitbx/array_family copying build/lib/scitbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/regression_test.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_smart_selection.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/accessors copying build/lib/scitbx/array_family/accessors/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/accessors copying build/lib/scitbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/detail copying build/lib/scitbx/array_family/detail/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/detail copying build/lib/scitbx/array_family/shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family copying build/lib/scitbx/golden_section_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/source_generators copying build/lib/scitbx/source_generators/lbfgs_fem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators creating build/bdist.linux-loongarch64/wheel/scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_apply.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_algebras.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_functors.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_reductions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/operator_functor_info.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_all.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_std_imports.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators creating build/bdist.linux-loongarch64/wheel/scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree_find_paths.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity_matrix_symbolic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tardy_tree.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_rigidity.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/test_cases_tardy_pdb.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph creating build/bdist.linux-loongarch64/wheel/scitbx/python_utils copying build/lib/scitbx/python_utils/tst_random_transform.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/command_line.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/robust_statistics.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/signal_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_robust.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/graph_tools.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/random_transform.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/misc.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/dicts.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graphics_utils creating build/bdist.linux-loongarch64/wheel/scitbx/tests copying build/lib/scitbx/tests/tst_r3_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_smoothing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/differential_evolution.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/simplex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/direct_search_simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_cubicle_neighbors.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/golden_section_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_minimizer_lbfgs_general.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests creating build/bdist.linux-loongarch64/wheel/qttbx creating build/bdist.linux-loongarch64/wheel/qttbx/viewers copying build/lib/qttbx/viewers/chimerax.py -> build/bdist.linux-loongarch64/wheel/./qttbx/viewers copying build/lib/qttbx/viewers/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/viewers copying build/lib/qttbx/phil.py -> build/bdist.linux-loongarch64/wheel/./qttbx copying build/lib/qttbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx creating build/bdist.linux-loongarch64/wheel/fftw3tbx copying build/lib/fftw3tbx/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx copying build/lib/fftw3tbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx copying build/lib/fftw3tbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx running install_egg_info Copying cctbx.egg-info to build/bdist.linux-loongarch64/wheel/./cctbx-2023.12.egg-info running install_scripts creating build/bdist.linux-loongarch64/wheel/cctbx-2023.12.dist-info/WHEEL creating '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/.tmp-87_3_kwt/cctbx-2023.12-py3-none-any.whl' and adding 'build/bdist.linux-loongarch64/wheel' to it adding 'annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/run_tests.py' adding 'annlib_adaptbx/annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/annlib_adaptbx/sample.py' adding 'annlib_adaptbx/annlib_adaptbx/self_match.py' adding 'annlib_adaptbx/source_generators/__init__.py' adding 'annlib_adaptbx/source_generators/generate_all.py' adding 'boost/__init__.py' adding 'boost/optional.py' adding 'boost/python.py' adding 'boost/rational.py' adding 'boost/std_pair.py' adding 'boost/tuple.py' adding 'boost_adaptbx/__init__.py' adding 'boost_adaptbx/hybrid_times.py' adding 'boost_adaptbx/libtbx_refresh.py' adding 'boost_adaptbx/run_tests.py' adding 'boost_adaptbx/boost/__init__.py' adding 'boost_adaptbx/boost/optional.py' adding 'boost_adaptbx/boost/python.py' adding 'boost_adaptbx/boost/rational.py' adding 'boost_adaptbx/boost/std_pair.py' adding 'boost_adaptbx/boost/tuple.py' adding 'boost_adaptbx/command_line/__init__.py' adding 'boost_adaptbx/command_line/divide_by_zero.py' adding 'boost_adaptbx/command_line/double_overflow.py' adding 'boost_adaptbx/command_line/gcd.py' adding 'boost_adaptbx/command_line/inexact.py' adding 'boost_adaptbx/command_line/int_overflow.py' adding 'boost_adaptbx/command_line/lcm.py' adding 'boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py' adding 'boost_adaptbx/command_line/segmentation_fault.py' adding 'boost_adaptbx/command_line/show_environ_usage.py' adding 'boost_adaptbx/command_line/show_platform_info.py' adding 'boost_adaptbx/graph/__init__.py' adding 'boost_adaptbx/graph/breadth_first_search.py' adding 'boost_adaptbx/graph/clustering_algorithm.py' adding 'boost_adaptbx/graph/connected_component_algorithm.py' adding 'boost_adaptbx/graph/graph_structure_comparison.py' adding 'boost_adaptbx/graph/maximum_clique.py' adding 'boost_adaptbx/graph/metric.py' adding 'boost_adaptbx/graph/min_cut_max_flow.py' adding 'boost_adaptbx/graph/minimum_cut_enumerate.py' adding 'boost_adaptbx/graph/utility.py' adding 'cbflib_adaptbx/__init__.py' adding 'cbflib_adaptbx/copy_files.py' adding 'cbflib_adaptbx/exercise_compression.py' adding 'cbflib_adaptbx/run_tests.py' adding 'cbflib_adaptbx/command_line/__init__.py' adding 'cbflib_adaptbx/command_line/dump.py' adding 'ccp4io_adaptbx/__init__.py' adding 'ccp4io_adaptbx/copy_files.py' adding 'ccp4io_adaptbx/tst.py' adding 'cctbx/__init__.py' adding 'cctbx/adptbx.py' adding 'cctbx/anharmonic.py' adding 'cctbx/crystal_orientation.py' adding 'cctbx/dmtbx.py' adding 'cctbx/euclidean_model_matching.py' adding 'cctbx/french_wilson.py' adding 'cctbx/libtbx_refresh.py' adding 'cctbx/math_module.py' adding 'cctbx/multipolar.py' adding 'cctbx/r_free_utils.py' adding 'cctbx/run_examples.py' adding 'cctbx/run_tests.py' adding 'cctbx/statistics.py' adding 'cctbx/symmetry_search.py' adding 'cctbx/translation_search.py' adding 'cctbx/adp_restraints/__init__.py' adding 'cctbx/adp_restraints/energies.py' adding 'cctbx/adp_restraints/flags.py' adding 'cctbx/adp_restraints/tst_ext.py' adding 'cctbx/array_family/__init__.py' adding 'cctbx/array_family/flex.py' adding 'cctbx/command_line/__init__.py' adding 'cctbx/command_line/auto_sharpen.py' adding 'cctbx/command_line/brehm_diederichs.py' adding 'cctbx/command_line/cctbx_test_nightly.py' adding 'cctbx/command_line/cod_select_and_pickle.py' adding 'cctbx/command_line/diffuse.py' adding 'cctbx/command_line/eltbx.show_fp_fdp.py' adding 'cctbx/command_line/euclidean_model_matching.py' adding 'cctbx/command_line/find_reticular_twin_laws.py' adding 'cctbx/command_line/form_factor_query.py' adding 'cctbx/command_line/precession_view.py' adding 'cctbx/command_line/qscore.py' adding 'cctbx/command_line/samosa_join.py' adding 'cctbx/command_line/samosa_scale.py' adding 'cctbx/command_line/segment_and_split_map.py' adding 'cctbx/command_line/space_group_info.py' adding 'cctbx/command_line/structure_factor_timings.py' adding 'cctbx/command_line/subgroups.py' adding 'cctbx/command_line/version.py' adding 'cctbx/command_line/wavelength_units.py' adding 'cctbx/covariance/__init__.py' adding 'cctbx/crystal/__init__.py' adding 'cctbx/crystal/burzlaff_zimmermann_dewolff.py' adding 'cctbx/crystal/close_packing.py' adding 'cctbx/crystal/coordination_sequences.py' adding 'cctbx/crystal/direct_space_asu.py' adding 'cctbx/crystal/distance_based_connectivity.py' adding 'cctbx/crystal/find_best_cell.py' adding 'cctbx/crystal/reindex.py' adding 'cctbx/crystal/super_cell.py' adding 'cctbx/crystal/tst_distance_based_connectivity.py' adding 'cctbx/crystal/tst_ext.py' adding 'cctbx/crystal/tst_super_cell.py' adding 'cctbx/development/__init__.py' adding 'cctbx/development/approx_amplitude_vs_resolution.py' adding 'cctbx/development/cns_density_modification.py' adding 'cctbx/development/create_models_or_maps.py' adding 'cctbx/development/debug_utils.py' adding 'cctbx/development/direct_or_fft.py' adding 'cctbx/development/electron_density_sampling.py' adding 'cctbx/development/fmt_utils.py' adding 'cctbx/development/github.py' adding 'cctbx/development/make_cns_input.py' adding 'cctbx/development/make_settings.py' adding 'cctbx/development/random_structure.py' adding 'cctbx/development/run_shelx.py' adding 'cctbx/development/run_shelx76.py' adding 'cctbx/development/space_group_option_parser.py' adding 'cctbx/development/structure_factor_utils.py' adding 'cctbx/development/tst_cns_epsilon.py' adding 'cctbx/development/tst_cns_hl.py' adding 'cctbx/eltbx/__init__.py' adding 'cctbx/eltbx/attenuation_coefficient.py' adding 'cctbx/eltbx/chemical_elements.py' adding 'cctbx/eltbx/covalent_radii.py' adding 'cctbx/eltbx/distance_based_connectivity.py' adding 'cctbx/eltbx/e_scattering.py' adding 'cctbx/eltbx/formula.py' adding 'cctbx/eltbx/fp_fdp.py' adding 'cctbx/eltbx/gaussian_fit.py' adding 'cctbx/eltbx/henke.py' adding 'cctbx/eltbx/icsd_radii.py' adding 'cctbx/eltbx/neutron.py' adding 'cctbx/eltbx/read_custom_scattering_dict.py' adding 'cctbx/eltbx/sasaki.py' adding 'cctbx/eltbx/tiny_pse.py' adding 'cctbx/eltbx/van_der_waals_radii.py' adding 'cctbx/eltbx/wavelengths.py' adding 'cctbx/eltbx/development/__init__.py' adding 'cctbx/eltbx/development/combine_fits.py' adding 'cctbx/eltbx/development/create_n_gaussian_raw_cpp.py' adding 'cctbx/eltbx/development/e_scattering_plots.py' adding 'cctbx/eltbx/development/format_gaussian_fits.py' adding 'cctbx/eltbx/development/hydrogen_plots.py' adding 'cctbx/eltbx/development/itvc_approx.py' adding 'cctbx/eltbx/development/itvc_cross_validation.py' adding 'cctbx/eltbx/development/itvc_fits.py' adding 'cctbx/eltbx/development/itvc_kissel.py' adding 'cctbx/eltbx/development/itvc_section61_io.py' adding 'cctbx/eltbx/development/kissel_fits.py' adding 'cctbx/eltbx/development/kissel_io.py' adding 'cctbx/eltbx/development/rez_rez_grant.py' adding 'cctbx/eltbx/xray_scattering/__init__.py' adding 'cctbx/examples/__init__.py' adding 'cctbx/examples/adp_symmetry_constraints.py' adding 'cctbx/examples/all_axes.py' adding 'cctbx/examples/analyze_adp.py' adding 'cctbx/examples/ccp4_map.py' adding 'cctbx/examples/change_hand_p31.py' adding 'cctbx/examples/convert_ccp4_symop_lib.py' adding 'cctbx/examples/cr2o3_consistency_checks.py' adding 'cctbx/examples/cr2o3_primitive_cell.py' adding 'cctbx/examples/exp_i_alpha_derivatives.py' adding 'cctbx/examples/f_model_example.py' adding 'cctbx/examples/fft_map_electron_density_around_atom.py' adding 'cctbx/examples/find_distances_using_cpp_objects.py' adding 'cctbx/examples/find_sys_abs_equiv_space_groups.py' adding 'cctbx/examples/g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/g_exp_i_partial_derivatives.py' adding 'cctbx/examples/getting_started.py' adding 'cctbx/examples/hirshfeld_test.py' adding 'cctbx/examples/le_page_1982_vs_lebedev_2005.py' adding 'cctbx/examples/lebedev_2005_perturbation.py' adding 'cctbx/examples/list_non_principal_continuous_shifts.py' adding 'cctbx/examples/location_part.py' adding 'cctbx/examples/map_skewness.py' adding 'cctbx/examples/maximum_subgroups.py' adding 'cctbx/examples/miller_common_sets.py' adding 'cctbx/examples/miller_transform.py' adding 'cctbx/examples/neutron_structure_factors.py' adding 'cctbx/examples/phase_o_phrenia.py' adding 'cctbx/examples/quartz_structure.py' adding 'cctbx/examples/random_f_calc.py' adding 'cctbx/examples/random_puckers.py' adding 'cctbx/examples/reduced_cell_two_folds.py' adding 'cctbx/examples/site_symmetry_constraints.py' adding 'cctbx/examples/site_symmetry_table.py' adding 'cctbx/examples/space_group_matrices.py' adding 'cctbx/examples/space_subgroups.py' adding 'cctbx/examples/steve_collins.py' adding 'cctbx/examples/structure_factor_derivatives.py' adding 'cctbx/examples/structure_factor_derivatives_2.py' adding 'cctbx/examples/structure_factor_derivatives_3.py' adding 'cctbx/examples/structure_factor_derivatives_4.py' adding 'cctbx/examples/sub_group_graph.py' adding 'cctbx/examples/symops_530.py' adding 'cctbx/examples/trigonal_r_vs_tetragonal_i.py' adding 'cctbx/examples/tst_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_phase_o_phrenia.py' adding 'cctbx/examples/tst_space_subgroups.py' adding 'cctbx/examples/tst_structure_factor_derivatives.py' adding 'cctbx/examples/tst_structure_factor_derivatives_2.py' adding 'cctbx/examples/tst_structure_factor_derivatives_3.py' adding 'cctbx/examples/tst_structure_factor_derivatives_4.py' adding 'cctbx/examples/unit_cell_minimizers.py' adding 'cctbx/examples/unit_cell_refinement.py' adding 'cctbx/examples/view_fft_map.py' adding 'cctbx/examples/merging/__init__.py' adding 'cctbx/examples/merging/data_subset.py' adding 'cctbx/examples/merging/data_utilities.py' adding 'cctbx/examples/merging/show_results.py' adding 'cctbx/examples/merging/sigma_correction.py' adding 'cctbx/examples/merging/task4.py' adding 'cctbx/examples/merging/test1.py' adding 'cctbx/examples/merging/test_cc_half.py' adding 'cctbx/examples/merging/test_levenberg_sparse.py' adding 'cctbx/examples/merging/tst_permutations.py' adding 'cctbx/examples/merging/samosa/__init__.py' adding 'cctbx/examples/merging/samosa/join.py' adding 'cctbx/examples/merging/samosa/per_lattice_postrefinement.py' adding 'cctbx/examples/merging/samosa/scale.py' adding 'cctbx/examples/structure_factor_calculus/__init__.py' adding 'cctbx/examples/structure_factor_calculus/site_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/u_star_derivatives.py' adding 'cctbx/geometry/__init__.py' adding 'cctbx/geometry_restraints/__init__.py' adding 'cctbx/geometry_restraints/auto_linking_types.py' adding 'cctbx/geometry_restraints/base_geometry.py' adding 'cctbx/geometry_restraints/distance_least_squares.py' adding 'cctbx/geometry_restraints/energies.py' adding 'cctbx/geometry_restraints/flags.py' adding 'cctbx/geometry_restraints/lbfgs.py' adding 'cctbx/geometry_restraints/linking_class.py' adding 'cctbx/geometry_restraints/manager.py' adding 'cctbx/geometry_restraints/process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/standard_cif_links.py' adding 'cctbx/geometry_restraints/tst_angle_derivs.py' adding 'cctbx/geometry_restraints/tst_ext.py' adding 'cctbx/geometry_restraints/tst_motif.py' adding 'cctbx/geometry_restraints/tst_process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/tst_proxy_registry.py' adding 'cctbx/macro_mol/__init__.py' adding 'cctbx/macro_mol/rotation_parameters.py' adding 'cctbx/maptbx/__init__.py' adding 'cctbx/maptbx/auto_sharpen.py' adding 'cctbx/maptbx/box.py' adding 'cctbx/maptbx/fsc_curve.py' adding 'cctbx/maptbx/map_symmetry.py' adding 'cctbx/maptbx/mask.py' adding 'cctbx/maptbx/mem.py' adding 'cctbx/maptbx/minimization.py' adding 'cctbx/maptbx/prepare_map_for_docking.py' adding 'cctbx/maptbx/prepare_map_for_refinement.py' adding 'cctbx/maptbx/qscore.py' adding 'cctbx/maptbx/real_space_refinement_simple.py' adding 'cctbx/maptbx/refine_scales_errors.py' adding 'cctbx/maptbx/refine_sharpening.py' adding 'cctbx/maptbx/resolution_from_map_and_model.py' adding 'cctbx/maptbx/segment_and_split_map.py' adding 'cctbx/maptbx/tst_asymmetric_map.py' adding 'cctbx/maptbx/tst_atom_curves.py' adding 'cctbx/maptbx/tst_atom_radius_as_central_peak_width.py' adding 'cctbx/maptbx/tst_bcr.py' adding 'cctbx/maptbx/tst_ccp.py' adding 'cctbx/maptbx/tst_get_percentile_cutoffs.py' adding 'cctbx/maptbx/tst_interpolation.py' adding 'cctbx/maptbx/tst_interpolation_2.py' adding 'cctbx/maptbx/tst_loft.py' adding 'cctbx/maptbx/tst_map_peak_3d_as_2d.py' adding 'cctbx/maptbx/tst_mask.py' adding 'cctbx/maptbx/tst_peak_volume_estimate.py' adding 'cctbx/maptbx/tst_qscore.py' adding 'cctbx/maptbx/tst_real_space_refinement_simple.py' adding 'cctbx/maptbx/tst_resolution_from_map_and_model.py' adding 'cctbx/maptbx/tst_target_and_gradients.py' adding 'cctbx/maptbx/bcr/__init__.py' adding 'cctbx/maptbx/bcr/bcr.py' adding 'cctbx/maptbx/bcr/compute_tables.py' adding 'cctbx/maptbx/bcr/qmap.py' adding 'cctbx/maptbx/bcr/tst_adp_refine.py' adding 'cctbx/maptbx/bcr/tst_example.py' adding 'cctbx/maptbx/bcr/tst_qmap_02.py' adding 'cctbx/maptbx/bcr/tst_table.py' adding 'cctbx/maptbx/bcr/tst_two_atoms.py' adding 'cctbx/maptbx/bcr/tst_vrm.py' adding 'cctbx/maptbx/bcr/tst_vrm2.py' adding 'cctbx/masks/__init__.py' adding 'cctbx/merging/__init__.py' adding 'cctbx/merging/brehm_diederichs.py' adding 'cctbx/miller/__init__.py' adding 'cctbx/miller/display.py' adding 'cctbx/miller/reindexing.py' adding 'cctbx/miller/tst_map_to_asu_isym.py' adding 'cctbx/miller/tst_reindexing.py' adding 'cctbx/neutron/__init__.py' adding 'cctbx/omz/__init__.py' adding 'cctbx/omz/bfgs.py' adding 'cctbx/omz/cif_refine.py' adding 'cctbx/omz/cod_refine.py' adding 'cctbx/omz/cod_select_and_pickle.py' adding 'cctbx/omz/dev.py' adding 'cctbx/omz/eval_iso_vs_refined.py' adding 'cctbx/omz/pdb_dev.py' adding 'cctbx/omz/tardy_adaptor.py' adding 'cctbx/omz/tst_bfgs.py' adding 'cctbx/omz/tst_dev.py' adding 'cctbx/regression/__init__.py' adding 'cctbx/regression/tst_adp_aniso_restraints.py' adding 'cctbx/regression/tst_adp_constraints.py' adding 'cctbx/regression/tst_adp_constraints_cartesian.py' adding 'cctbx/regression/tst_amplitude_normalisation.py' adding 'cctbx/regression/tst_change_basis.py' adding 'cctbx/regression/tst_connectivity.py' adding 'cctbx/regression/tst_connectivity_allsym.py' adding 'cctbx/regression/tst_coordination_sequences.py' adding 'cctbx/regression/tst_create_models_or_maps.py' adding 'cctbx/regression/tst_crystal.py' adding 'cctbx/regression/tst_crystal_asu_clusters.py' adding 'cctbx/regression/tst_crystal_close_packing.py' adding 'cctbx/regression/tst_diffuse.py' adding 'cctbx/regression/tst_direct_scaling.py' adding 'cctbx/regression/tst_direct_space_asu.py' adding 'cctbx/regression/tst_emma.py' adding 'cctbx/regression/tst_expand_to_p1.py' adding 'cctbx/regression/tst_f_model.py' adding 'cctbx/regression/tst_fast_nv1995.py' adding 'cctbx/regression/tst_fcalc_fft_stability.py' adding 'cctbx/regression/tst_find_best_cell.py' adding 'cctbx/regression/tst_fourier_transform_real_part_at_x.py' adding 'cctbx/regression/tst_french_wilson.py' adding 'cctbx/regression/tst_geometry_restraints.py' adding 'cctbx/regression/tst_geometry_restraints_2.py' adding 'cctbx/regression/tst_geometry_restraints_lbfgs.py' adding 'cctbx/regression/tst_grm_modifications.py' adding 'cctbx/regression/tst_grm_modifications_rm.py' adding 'cctbx/regression/tst_grm_pickling.py' adding 'cctbx/regression/tst_grouped_data.py' adding 'cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py' adding 'cctbx/regression/tst_krivy_gruber.py' adding 'cctbx/regression/tst_loc_res.py' adding 'cctbx/regression/tst_map_is_periodic.py' adding 'cctbx/regression/tst_map_weights_for_symmetry_summation.py' adding 'cctbx/regression/tst_maptbx_box.py' adding 'cctbx/regression/tst_maptbx_mask.py' adding 'cctbx/regression/tst_maptbx_structure_factors.py' adding 'cctbx/regression/tst_math_module.py' adding 'cctbx/regression/tst_mem.py' adding 'cctbx/regression/tst_mem_2.py' adding 'cctbx/regression/tst_miller.py' adding 'cctbx/regression/tst_miller_data_manipulation.py' adding 'cctbx/regression/tst_miller_double_step_filtration.py' adding 'cctbx/regression/tst_miller_fft_map.py' adding 'cctbx/regression/tst_miller_lookup_utils.py' adding 'cctbx/regression/tst_miller_merge_equivalents.py' adding 'cctbx/regression/tst_miller_statistics.py' adding 'cctbx/regression/tst_niggli_reduction_cpp.py' adding 'cctbx/regression/tst_pair_asu_table.py' adding 'cctbx/regression/tst_pointgroup_tools.py' adding 'cctbx/regression/tst_prepare_map_for_docking.py' adding 'cctbx/regression/tst_r_free_utils.py' adding 'cctbx/regression/tst_reciprocal_space_asu.py' adding 'cctbx/regression/tst_refine_xray_curvs.py' adding 'cctbx/regression/tst_reflection_statistics.py' adding 'cctbx/regression/tst_sampled_model_density.py' adding 'cctbx/regression/tst_sf_low_res_accuracy.py' adding 'cctbx/regression/tst_sgtbx.py' adding 'cctbx/regression/tst_sgtbx_denominators.py' adding 'cctbx/regression/tst_sgtbx_harker.py' adding 'cctbx/regression/tst_sgtbx_lattice_symmetry.py' adding 'cctbx/regression/tst_sgtbx_site_constraints.py' adding 'cctbx/regression/tst_sgtbx_special_op_simplifier.py' adding 'cctbx/regression/tst_sgtbx_subgroups.py' adding 'cctbx/regression/tst_sgtbx_tidy_pickling.py' adding 'cctbx/regression/tst_show_cosets.py' adding 'cctbx/regression/tst_space_group_type_tidy_cb_op_t.py' adding 'cctbx/regression/tst_sphericity.py' adding 'cctbx/regression/tst_statistics_graphs.py' adding 'cctbx/regression/tst_triplet_generator.py' adding 'cctbx/regression/tst_twin_target.py' adding 'cctbx/regression/tst_wavelength_units.py' adding 'cctbx/regression/tst_web_change_basis.py' adding 'cctbx/regression/tst_weighting_schemes.py' adding 'cctbx/regression/tst_wilson_plot.py' adding 'cctbx/regression/tst_xray.py' adding 'cctbx/regression/tst_xray_derivatives.py' adding 'cctbx/regression/tst_xray_fast_gradients.py' adding 'cctbx/regression/tst_xray_minimization.py' adding 'cctbx/regression/tst_xray_minimization_failure.py' adding 'cctbx/regression/tst_xray_target_functors.py' adding 'cctbx/sgtbx/__init__.py' adding 'cctbx/sgtbx/bravais_types.py' adding 'cctbx/sgtbx/cosets.py' adding 'cctbx/sgtbx/harker.py' adding 'cctbx/sgtbx/lattice_symmetry.py' adding 'cctbx/sgtbx/literal_description.py' adding 'cctbx/sgtbx/plane_groups.py' adding 'cctbx/sgtbx/pointgroup_tools.py' adding 'cctbx/sgtbx/rational_matrices_point_groups.py' adding 'cctbx/sgtbx/reticular_pg_tools.py' adding 'cctbx/sgtbx/reticular_twin_laws.py' adding 'cctbx/sgtbx/show_cosets.py' adding 'cctbx/sgtbx/sub_lattice_tools.py' adding 'cctbx/sgtbx/subgroups.py' adding 'cctbx/sgtbx/symbol_confidence.py' adding 'cctbx/sgtbx/sys_abs_equiv.py' adding 'cctbx/sgtbx/direct_space_asu/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/check_redundancies.py' adding 'cctbx/sgtbx/direct_space_asu/cut_plane.py' adding 'cctbx/sgtbx/direct_space_asu/facet_analysis.py' adding 'cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/short_cuts.py' adding 'cctbx/sgtbx/direct_space_asu/proto/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py' adding 'cctbx/sgtbx/direct_space_asu/proto/tst_asu.py' adding 'cctbx/source_generators/__init__.py' adding 'cctbx/source_generators/flex_fwd_h.py' adding 'cctbx/source_generators/eltbx/__init__.py' adding 'cctbx/source_generators/eltbx/generate_henke_cpp.py' adding 'cctbx/source_generators/eltbx/generate_sasaki_cpp.py' adding 'cctbx/uctbx/__init__.py' adding 'cctbx/uctbx/gruber_1973.py' adding 'cctbx/uctbx/gruber_1973_table_1.py' adding 'cctbx/uctbx/krivy_gruber_1976.py' adding 'cctbx/uctbx/reduction_base.py' adding 'cctbx/uctbx/determine_unit_cell/__init__.py' adding 'cctbx/web/__init__.py' adding 'cctbx/web/all_axes.py' adding 'cctbx/web/browse_settings.py' adding 'cctbx/web/cgi_utils.py' adding 'cctbx/web/change_basis.py' adding 'cctbx/web/change_hand.py' adding 'cctbx/web/change_setting.py' adding 'cctbx/web/dispatcher.py' adding 'cctbx/web/emma.py' adding 'cctbx/web/explore_symmetry.py' adding 'cctbx/web/frac_cart.py' adding 'cctbx/web/io_utils.py' adding 'cctbx/web/iotbx_cif_validate.py' adding 'cctbx/web/lattice_symmetry.py' adding 'cctbx/web/libtbx_help.py' adding 'cctbx/web/multiple_cell.py' adding 'cctbx/web/phase_o_phrenia.py' adding 'cctbx/web/replay.py' adding 'cctbx/web/shelx.py' adding 'cctbx/web/structure_factors.py' adding 'cctbx/web/structure_factors_pdb.py' adding 'cctbx/web/wyckoff.py' adding 'cctbx/web/asu_gallery/__init__.py' adding 'cctbx/web/asu_gallery/guide_to_notation.py' adding 'cctbx/web/asu_gallery/jv_asu.py' adding 'cctbx/web/asu_gallery/jv_index.py' adding 'cctbx/web/asu_gallery/jvx.py' adding 'cctbx/web/asu_gallery/web_links.py' adding 'cctbx/xray/__init__.py' adding 'cctbx/xray/ext.py' adding 'cctbx/xray/minimization.py' adding 'cctbx/xray/observation_types.py' adding 'cctbx/xray/scatterer.py' adding 'cctbx/xray/structure.py' adding 'cctbx/xray/target_functors.py' adding 'cctbx/xray/weighting_schemes.py' adding 'cctbx/xray/observations/__init__.py' adding 'cctbx/xray/observations/tst_observations.py' adding 'cctbx/xray/structure_factors/__init__.py' adding 'cctbx/xray/structure_factors/algorithm.py' adding 'cctbx/xray/structure_factors/from_scatterers.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct_parallel.py' adding 'cctbx/xray/structure_factors/from_scatterers_fft.py' adding 'cctbx/xray/structure_factors/global_counters.py' adding 'cctbx/xray/structure_factors/gradient_flags.py' adding 'cctbx/xray/structure_factors/gradients.py' adding 'cctbx/xray/structure_factors/gradients_base.py' adding 'cctbx/xray/structure_factors/gradients_direct.py' adding 'cctbx/xray/structure_factors/gradients_fft.py' adding 'cctbx/xray/structure_factors/manager.py' adding 'cctbx/xray/structure_factors/misc.py' adding 'cctbx/xray/targets/__init__.py' adding 'cctbx/xray/targets/r1.py' adding 'cctbx/xray/targets/tst_r1.py' adding 'cctbx/xray/targets/tst_shelxl_wght_ls.py' adding 'cctbx-2023.12.dist-info/licenses/LICENSE.txt' adding 'cctbx_website/__init__.py' adding 'cctbx_website/libtbx_refresh.py' adding 'cctbx_website/run_tests.py' adding 'cctbx_website/command_line/__init__.py' adding 'cctbx_website/command_line/comment_to_docstring.py' adding 'cctbx_website/command_line/edit_for_boost.py' adding 'cctbx_website/command_line/edit_html.py' adding 'cctbx_website/command_line/extract_script_from_html_cctbx_doc.py' adding 'cctbx_website/command_line/run_pdoc_cctbx_api.py' adding 'cctbx_website/command_line/tst_comment_to_docstring.py' adding 'cctbx_website/regression/__init__.py' adding 'cctbx_website/regression/exercise.py' adding 'cctbx_website/regression/tst_10_doc_programming_tips_1.py' adding 'cctbx_website/regression/tst_11_script_1.py' adding 'cctbx_website/regression/tst_12_script_compare_ss.py' adding 'cctbx_website/regression/tst_13_script_ideal_ss.py' adding 'cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py' adding 'cctbx_website/regression/tst_15_doc_models_hierarchy.py' adding 'cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py' adding 'cctbx_website/regression/tst_17_script_rfactors.py' adding 'cctbx_website/regression/tst_18_doc_programming_tips_2.py' adding 'cctbx_website/regression/tst_19_doc_programming_tips_3.py' adding 'cctbx_website/regression/tst_1_template.py' adding 'cctbx_website/regression/tst_2_doc_hlo_intro.py' adding 'cctbx_website/regression/tst_3_doc_hlo_model_manager.py' adding 'cctbx_website/regression/tst_4_doc_hlo_data_manager.py' adding 'cctbx_website/regression/tst_5_doc_hlo_map_manager.py' adding 'cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py' adding 'cctbx_website/regression/tst_7_doc_low_flex_advanced.py' adding 'cctbx_website/regression/tst_8_doc_maps_intro.py' adding 'cctbx_website/regression/tst_9_doc_maps_boxing.py' adding 'cctbx_website/regression/tst_py_from_html.py' adding 'cma_es/__init__.py' adding 'cma_es/cma_es_interface.py' adding 'cma_es/run_tests.py' adding 'cma_es/tst_cma_es.py' adding 'cootbx/__init__.py' adding 'cootbx/hydrogens_button.py' adding 'cootbx/interactive_edit.py' adding 'cootbx/ligand_checklist.py' adding 'cootbx/simple_zoom_list.py' adding 'cootbx/validation_lists.py' adding 'cootbx/view_refinement.py' adding 'cootbx/watch_file.py' adding 'cootbx/xmlrpc_server.py' adding 'fable/__init__.py' adding 'fable/cout.py' adding 'fable/equivalence.py' adding 'fable/intrinsics.py' adding 'fable/read.py' adding 'fable/run_tests.py' adding 'fable/simple_compilation.py' adding 'fable/tokenization.py' adding 'fable/tst_cout.py' adding 'fable/tst_cout_compile.py' adding 'fable/tst_equivalence.py' adding 'fable/tst_ext.py' adding 'fable/tst_read.py' adding 'fable/utils.py' adding 'fable/command_line/__init__.py' adding 'fable/command_line/cout.py' adding 'fable/command_line/fem_include_search_paths.py' adding 'fable/command_line/insert_write_at_start_of_each_procedure.py' adding 'fable/command_line/read.py' adding 'fable/command_line/show_calls.py' adding 'fable/command_line/split.py' adding 'fast_linalg/__init__.py' adding 'fftw3tbx/__init__.py' adding 'fftw3tbx/libtbx_refresh.py' adding 'fftw3tbx/tst_ext.py' adding 'gltbx/__init__.py' adding 'gltbx/extract_opengl_specs.py' adding 'gltbx/fonts.py' adding 'gltbx/generate_defines_bpl.py' adding 'gltbx/generate_fonts_ucs_cpp.py' adding 'gltbx/generate_functions_bpl.py' adding 'gltbx/gl.py' adding 'gltbx/gl_managed.py' adding 'gltbx/glu.py' adding 'gltbx/images.py' adding 'gltbx/libtbx_refresh.py' adding 'gltbx/quadrics.py' adding 'gltbx/run_tests.py' adding 'gltbx/tst.py' adding 'gltbx/tst_ellipsoids.py' adding 'gltbx/tst_fonts.py' adding 'gltbx/tst_viewer_utils.py' adding 'gltbx/util.py' adding 'gltbx/viewer_utils.py' adding 'gltbx/wx_cube.py' adding 'gltbx/wx_ellipsoids_test.py' adding 'gltbx/wx_motion_on_tab.py' adding 'gltbx/wx_scene.py' adding 'gltbx/wx_viewer.py' adding 'gltbx/wx_viewer_example.py' adding 'gltbx/wx_viewer_leapmotion.py' adding 'gltbx/wx_viewers_images.py' adding 'gltbx/command_line/__init__.py' adding 'gltbx/command_line/try_imports.py' adding 'iotbx/__init__.py' adding 'iotbx/builders.py' adding 'iotbx/builders_depending_on_smtbx.py' adding 'iotbx/cif_mtz_data_labels.py' adding 'iotbx/cli_parser.py' adding 'iotbx/crystal_symmetry_from_any.py' adding 'iotbx/csv_utils.py' adding 'iotbx/data_plots.py' adding 'iotbx/extract_xtal_data.py' adding 'iotbx/file_reader.py' adding 'iotbx/format.py' adding 'iotbx/libtbx_refresh.py' adding 'iotbx/logfiles.py' adding 'iotbx/map_manager.py' adding 'iotbx/map_model_manager.py' adding 'iotbx/map_tools.py' adding 'iotbx/merging_statistics.py' adding 'iotbx/mtrix_biomt.py' adding 'iotbx/option_parser.py' adding 'iotbx/phases.py' adding 'iotbx/phil.py' adding 'iotbx/poscar.py' adding 'iotbx/pymol.py' adding 'iotbx/ranges.py' adding 'iotbx/reflection_file_converter.py' adding 'iotbx/reflection_file_editor.py' adding 'iotbx/reflection_file_reader.py' adding 'iotbx/reflection_file_utils.py' adding 'iotbx/run_tests.py' adding 'iotbx/simple_parser.py' adding 'iotbx/symmetry.py' adding 'iotbx/table_one.py' adding 'iotbx/wildcard.py' adding 'iotbx/PrettyPrint/__init__.py' adding 'iotbx/PrettyPrint/tables.py' adding 'iotbx/bioinformatics/__init__.py' adding 'iotbx/bioinformatics/alignment_as_hsearch.py' adding 'iotbx/bioinformatics/ebi_wu_blast_xml.py' adding 'iotbx/bioinformatics/homologues.py' adding 'iotbx/bioinformatics/local_blast.py' adding 'iotbx/bioinformatics/ncbi_blast_xml.py' adding 'iotbx/bioinformatics/pdb_info.py' adding 'iotbx/bioinformatics/pubmed.py' adding 'iotbx/bioinformatics/structure.py' adding 'iotbx/bioinformatics/xmlbuild.py' adding 'iotbx/ccp4_map/__init__.py' adding 'iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/ccp4_map/tst.py' adding 'iotbx/cif/__init__.py' adding 'iotbx/cif/builders.py' adding 'iotbx/cif/citations.py' adding 'iotbx/cif/cod_tools.py' adding 'iotbx/cif/crystal_symmetry_from_cif.py' adding 'iotbx/cif/errors.py' adding 'iotbx/cif/geometry.py' adding 'iotbx/cif/model.py' adding 'iotbx/cif/restraint_file_merge.py' adding 'iotbx/cif/restraints.py' adding 'iotbx/cif/validation.py' adding 'iotbx/cns/__init__.py' adding 'iotbx/cns/crystal_symmetry_from_inp.py' adding 'iotbx/cns/crystal_symmetry_from_sdb.py' adding 'iotbx/cns/crystal_symmetry_utils.py' adding 'iotbx/cns/index_fobs_sigma_reader.py' adding 'iotbx/cns/miller_array.py' adding 'iotbx/cns/pdb_remarks.py' adding 'iotbx/cns/reflection_reader.py' adding 'iotbx/cns/sdb_reader.py' adding 'iotbx/cns/sdb_writer.py' adding 'iotbx/cns/space_group_symbols.py' adding 'iotbx/cns/tst_cns.py' adding 'iotbx/cns/xray_structure.py' adding 'iotbx/command_line/__init__.py' adding 'iotbx/command_line/biomt_reconstruction.py' adding 'iotbx/command_line/blast_pdb.py' adding 'iotbx/command_line/build_phil_cache.py' adding 'iotbx/command_line/cbf_read.py' adding 'iotbx/command_line/cif.as_miller_arrays.py' adding 'iotbx/command_line/cif.as_xray_structure.py' adding 'iotbx/command_line/cif.validate.py' adding 'iotbx/command_line/cif_as_pdb.py' adding 'iotbx/command_line/cns.reflection_reader.py' adding 'iotbx/command_line/cns.sdb_reader.py' adding 'iotbx/command_line/cns.transfer_crystal_symmetry.py' adding 'iotbx/command_line/cns_as_mtz.py' adding 'iotbx/command_line/crystal_symmetry_from_any.py' adding 'iotbx/command_line/csv_as_mtz.py' adding 'iotbx/command_line/dano_as_amplitudes.py' adding 'iotbx/command_line/detector_image_as_png.py' adding 'iotbx/command_line/distance_least_squares.py' adding 'iotbx/command_line/dtrek.to_cns.py' adding 'iotbx/command_line/effective_resolution.py' adding 'iotbx/command_line/emma.py' adding 'iotbx/command_line/explore_metric_symmetry.py' adding 'iotbx/command_line/export_scalepack_unmerged.py' adding 'iotbx/command_line/file_reader.py' adding 'iotbx/command_line/flip_symmetric_amino_acids.py' adding 'iotbx/command_line/french_wilson.py' adding 'iotbx/command_line/get_pubmed_citation.py' adding 'iotbx/command_line/lattice_symmetry.py' adding 'iotbx/command_line/merging_statistics.py' adding 'iotbx/command_line/mtrix_reconstruction.py' adding 'iotbx/command_line/mtz.dump.py' adding 'iotbx/command_line/mtz_as_cif.py' adding 'iotbx/command_line/patterson_map.py' adding 'iotbx/command_line/pdb.as_xray_structure.py' adding 'iotbx/command_line/pdb.b_factor_stats.py' adding 'iotbx/command_line/pdb.box_around_molecule.py' adding 'iotbx/command_line/pdb.hierarchy.py' adding 'iotbx/command_line/pdb.insert_scale_records.py' adding 'iotbx/command_line/pdb.join_fragment_files.py' adding 'iotbx/command_line/pdb.link_as_geometry_restraints_edits.py' adding 'iotbx/command_line/pdb.print_sequence.py' adding 'iotbx/command_line/pdb.superpose_atoms_by_name.py' adding 'iotbx/command_line/pdb.superpose_centers_of_mass.py' adding 'iotbx/command_line/pdb_add_conformations.py' adding 'iotbx/command_line/pdb_as_cif.py' adding 'iotbx/command_line/pdb_as_fasta.py' adding 'iotbx/command_line/pdb_cif_conversion.py' adding 'iotbx/command_line/pdb_get_citation.py' adding 'iotbx/command_line/pdb_labels_comparison.py' adding 'iotbx/command_line/pdb_labels_diff.py' adding 'iotbx/command_line/pdb_remediator.py' adding 'iotbx/command_line/pdb_show_connectivity.py' adding 'iotbx/command_line/pdb_split_models.py' adding 'iotbx/command_line/phil.py' adding 'iotbx/command_line/poscar_as_xray_structure.py' adding 'iotbx/command_line/r_free_flags_accumulation.py' adding 'iotbx/command_line/r_free_flags_as_cns.py' adding 'iotbx/command_line/r_free_flags_completion_simple.py' adding 'iotbx/command_line/reflection_file_converter.py' adding 'iotbx/command_line/reflection_file_editor.py' adding 'iotbx/command_line/reflection_file_reader.py' adding 'iotbx/command_line/reflection_statistics.py' adding 'iotbx/command_line/reindex.py' adding 'iotbx/command_line/shelx.as_cif.py' adding 'iotbx/command_line/shelx.as_xray_structure.py' adding 'iotbx/command_line/shelx.dump_as_python.py' adding 'iotbx/command_line/show_distances.py' adding 'iotbx/command_line/show_systematic_absences.py' adding 'iotbx/command_line/simple_map_coefficients.py' adding 'iotbx/command_line/sort_atoms.py' adding 'iotbx/command_line/split_data_cif.py' adding 'iotbx/command_line/symmetry_search.py' adding 'iotbx/command_line/unique_with_biomt.py' adding 'iotbx/command_line/xplor.map.show_summary.py' adding 'iotbx/data_manager/__init__.py' adding 'iotbx/data_manager/common.py' adding 'iotbx/data_manager/map_coefficients.py' adding 'iotbx/data_manager/miller_array.py' adding 'iotbx/data_manager/model.py' adding 'iotbx/data_manager/ncs_spec.py' adding 'iotbx/data_manager/phil.py' adding 'iotbx/data_manager/real_map.py' adding 'iotbx/data_manager/restraint.py' adding 'iotbx/data_manager/sequence.py' adding 'iotbx/detectors/__init__.py' adding 'iotbx/detectors/active_area_filter.py' adding 'iotbx/detectors/adsc.py' adding 'iotbx/detectors/adsc_minicbf.py' adding 'iotbx/detectors/adsc_module.py' adding 'iotbx/detectors/beam_center_convention.py' adding 'iotbx/detectors/bruker.py' adding 'iotbx/detectors/cbf.py' adding 'iotbx/detectors/cspad_detector_formats.py' adding 'iotbx/detectors/detectorbase.py' adding 'iotbx/detectors/dtrek.py' adding 'iotbx/detectors/edf.py' adding 'iotbx/detectors/eiger.py' adding 'iotbx/detectors/eiger_minicbf.py' adding 'iotbx/detectors/generic_detector.py' adding 'iotbx/detectors/hamamatsu.py' adding 'iotbx/detectors/image_from_http_request.py' adding 'iotbx/detectors/macscience.py' adding 'iotbx/detectors/mar.py' adding 'iotbx/detectors/marIP.py' adding 'iotbx/detectors/noir.py' adding 'iotbx/detectors/npy.py' adding 'iotbx/detectors/pilatus_minicbf.py' adding 'iotbx/detectors/pilatus_slice.py' adding 'iotbx/detectors/raxis.py' adding 'iotbx/detectors/raxis_nonsquare.py' adding 'iotbx/detectors/raxisbase.py' adding 'iotbx/detectors/saturn.py' adding 'iotbx/detectors/test_mar.py' adding 'iotbx/detectors/test_raxis2.py' adding 'iotbx/detectors/tst_adsc.py' adding 'iotbx/detectors/tst_cbf_comp_read_meth.py' adding 'iotbx/detectors/tst_debug_write.py' adding 'iotbx/detectors/tst_detectors.py' adding 'iotbx/detectors/tst_py_cbf.py' adding 'iotbx/detectors/url_support.py' adding 'iotbx/detectors/context/__init__.py' adding 'iotbx/detectors/context/camera_convention.py' adding 'iotbx/detectors/context/config_detector.py' adding 'iotbx/detectors/context/endstation.py' adding 'iotbx/detectors/context/endstation_max_iv_trial.py' adding 'iotbx/detectors/context/spot_xy_convention.py' adding 'iotbx/detectors/util/__init__.py' adding 'iotbx/detectors/util/filters.py' adding 'iotbx/dsn6/__init__.py' adding 'iotbx/dsn6/tst.py' adding 'iotbx/dtrek/__init__.py' adding 'iotbx/dtrek/crystal_symmetry_from_ref.py' adding 'iotbx/dtrek/dtrek_symmetry_dict.py' adding 'iotbx/dtrek/reflnlist_reader.py' adding 'iotbx/examples/__init__.py' adding 'iotbx/examples/direct_methods_light.py' adding 'iotbx/examples/libtbx_phil_examples.py' adding 'iotbx/examples/mtz_convert_free_to_work.py' adding 'iotbx/examples/mtz_free_flipper.py' adding 'iotbx/examples/pdb_hierarchy.py' adding 'iotbx/examples/pdb_shake.py' adding 'iotbx/examples/pdb_split_chains.py' adding 'iotbx/examples/pdb_symmetry_copies.py' adding 'iotbx/examples/pdb_tardy_conf_sampling_simple.py' adding 'iotbx/examples/pdb_to_map_simple.py' adding 'iotbx/examples/pdbx_mmcif_tutorial.py' adding 'iotbx/examples/prepare_model_for_rsr.py' adding 'iotbx/examples/recalculate_phenix_refine_r_factors.py' adding 'iotbx/examples/shelx_latt_sym_to_space_group_symbol.py' adding 'iotbx/examples/tst_mtz_free_flipper.py' adding 'iotbx/examples/pdb_truncate_to_ala/__init__.py' adding 'iotbx/examples/pdb_truncate_to_ala/tst.py' adding 'iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py' adding 'iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py' adding 'iotbx/examples/pdb_truncate_to_ala/v2_simple.py' adding 'iotbx/examples/pdb_truncate_to_ala/v3_better.py' adding 'iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py' adding 'iotbx/fullprof/__init__.py' adding 'iotbx/fullprof/read_pcr.py' adding 'iotbx/fullprof/write_pcr.py' adding 'iotbx/gui_tools/__init__.py' adding 'iotbx/gui_tools/cif_conversions.py' adding 'iotbx/gui_tools/import_data_and_flags.py' adding 'iotbx/gui_tools/models.py' adding 'iotbx/gui_tools/reflections.py' adding 'iotbx/gui_tools/tst.py' adding 'iotbx/kriber/__init__.py' adding 'iotbx/kriber/strudat.py' adding 'iotbx/kriber/tst_strudat.py' adding 'iotbx/mrcfile/__init__.py' adding 'iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/mtz/__init__.py' adding 'iotbx/mtz/crystal_symmetry_from_mtz.py' adding 'iotbx/mtz/extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst.py' adding 'iotbx/mtz/tst_dano.py' adding 'iotbx/mtz/tst_ext.py' adding 'iotbx/mtz/tst_extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst_miller_dict.py' adding 'iotbx/mtz/tst_unmerged.py' adding 'iotbx/ncs/__init__.py' adding 'iotbx/pdb/__init__.py' adding 'iotbx/pdb/aa_utils.py' adding 'iotbx/pdb/amino_acid_codes.py' adding 'iotbx/pdb/atom_name_interpretation.py' adding 'iotbx/pdb/atom_selection.py' adding 'iotbx/pdb/cryst1_interpretation.py' adding 'iotbx/pdb/crystal_symmetry_from_pdb.py' adding 'iotbx/pdb/download.py' adding 'iotbx/pdb/experiment_type.py' adding 'iotbx/pdb/extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/fetch.py' adding 'iotbx/pdb/forward_compatible_pdb_cif_conversion.py' adding 'iotbx/pdb/hierarchy.py' adding 'iotbx/pdb/hybrid_36.py' adding 'iotbx/pdb/misc_records_output.py' adding 'iotbx/pdb/mmcif.py' adding 'iotbx/pdb/modified_aa_names.py' adding 'iotbx/pdb/modified_rna_dna_names.py' adding 'iotbx/pdb/nucleic_acid_codes.py' adding 'iotbx/pdb/pdb_v3_cif_conversion.py' adding 'iotbx/pdb/pdbe.py' adding 'iotbx/pdb/rcsb.py' adding 'iotbx/pdb/records.py' adding 'iotbx/pdb/remark_290_interpretation.py' adding 'iotbx/pdb/remark_2_interpretation.py' adding 'iotbx/pdb/remark_3_interpretation.py' adding 'iotbx/pdb/rna_dna_detection.py' adding 'iotbx/pdb/secondary_structure.py' adding 'iotbx/pdb/tst_atom_name_interpretation.py' adding 'iotbx/pdb/tst_atom_selection.py' adding 'iotbx/pdb/tst_atom_selection_string.py' adding 'iotbx/pdb/tst_ext.py' adding 'iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/tst_hierarchy.py' adding 'iotbx/pdb/tst_hierarchy_atom_sort.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric_2.py' adding 'iotbx/pdb/tst_mmcif.py' adding 'iotbx/pdb/tst_mmcif_hierarchy.py' adding 'iotbx/pdb/tst_mmcif_hierarchy_2.py' adding 'iotbx/pdb/tst_pdb.py' adding 'iotbx/pdb/tst_read_mtrix_records_from_cif.py' adding 'iotbx/pdb/tst_rna_dna_atom_names.py' adding 'iotbx/pdb/tst_secondary_structure.py' adding 'iotbx/pdb/tst_secondary_structure_2.py' adding 'iotbx/pdb/tst_tls.py' adding 'iotbx/pdb/tst_utils.py' adding 'iotbx/pdb/utils.py' adding 'iotbx/pdb/web_service_api.py' adding 'iotbx/pdb/xray_structure.py' adding 'iotbx/pdb/remediation/__init__.py' adding 'iotbx/pdb/remediation/remediator.py' adding 'iotbx/pdb/remediation/tst_remediator.py' adding 'iotbx/programs/__init__.py' adding 'iotbx/programs/box_around_molecule.py' adding 'iotbx/programs/split_data_cif.py' adding 'iotbx/programs/unique_with_biomt.py' adding 'iotbx/regression/__init__.py' adding 'iotbx/regression/tst_add_conformations.py' adding 'iotbx/regression/tst_all_chain_ids.py' adding 'iotbx/regression/tst_atom_selections_10k.py' adding 'iotbx/regression/tst_bioinformatics.py' adding 'iotbx/regression/tst_box_around_molecule.py' adding 'iotbx/regression/tst_cif_1.py' adding 'iotbx/regression/tst_cif_as_pdb_1atom.py' adding 'iotbx/regression/tst_cli_parser.py' adding 'iotbx/regression/tst_crystal_symmetry_from_any.py' adding 'iotbx/regression/tst_csv_utils.py' adding 'iotbx/regression/tst_data_manager.py' adding 'iotbx/regression/tst_data_plots.py' adding 'iotbx/regression/tst_examples.py' adding 'iotbx/regression/tst_export_scalepack_unmerged.py' adding 'iotbx/regression/tst_extract_xtal_data.py' adding 'iotbx/regression/tst_fetch.py' adding 'iotbx/regression/tst_file_reader.py' adding 'iotbx/regression/tst_generate_n_char_string.py' adding 'iotbx/regression/tst_group_rounding.py' adding 'iotbx/regression/tst_hierarchy_altlocs.py' adding 'iotbx/regression/tst_hierarchy_copy_select.py' adding 'iotbx/regression/tst_hierarchy_forward_compatible_pdb.py' adding 'iotbx/regression/tst_hierarchy_id_str.py' adding 'iotbx/regression/tst_hierarchy_long_chain_ids_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_2.py' adding 'iotbx/regression/tst_hierarchy_long_resname_3.py' adding 'iotbx/regression/tst_hierarchy_long_resname_4.py' adding 'iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py' adding 'iotbx/regression/tst_hierarchy_occupancies_rounding.py' adding 'iotbx/regression/tst_hierarchy_pdb_v3.py' adding 'iotbx/regression/tst_lattice_symmetry.py' adding 'iotbx/regression/tst_map_manager.py' adding 'iotbx/regression/tst_map_manager_2.py' adding 'iotbx/regression/tst_map_manager_wrapping.py' adding 'iotbx/regression/tst_map_model_manager.py' adding 'iotbx/regression/tst_map_model_manager_2.py' adding 'iotbx/regression/tst_map_model_manager_3.py' adding 'iotbx/regression/tst_map_model_manager_4.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py' adding 'iotbx/regression/tst_map_model_manager_call_consistency.py' adding 'iotbx/regression/tst_map_model_manager_cif.py' adding 'iotbx/regression/tst_map_model_manager_external_sharpening_7.py' adding 'iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py' adding 'iotbx/regression/tst_map_model_manager_local_resolution_10.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py' adding 'iotbx/regression/tst_map_model_manager_tls_from_map_8.py' adding 'iotbx/regression/tst_map_tools.py' adding 'iotbx/regression/tst_merging_statistics.py' adding 'iotbx/regression/tst_miller_sort_asu.py' adding 'iotbx/regression/tst_mmcif_input.py' adding 'iotbx/regression/tst_mmcif_multimodel.py' adding 'iotbx/regression/tst_mmcif_segids.py' adding 'iotbx/regression/tst_mmcif_to_from_hierarchy.py' adding 'iotbx/regression/tst_mrc_io.py' adding 'iotbx/regression/tst_mtz_as_cif.py' adding 'iotbx/regression/tst_patterson.py' adding 'iotbx/regression/tst_pdb_as_cif.py' adding 'iotbx/regression/tst_pdb_as_fasta.py' adding 'iotbx/regression/tst_pdb_cif_cells.py' adding 'iotbx/regression/tst_pdb_cif_inputs.py' adding 'iotbx/regression/tst_pdb_link_records.py' adding 'iotbx/regression/tst_pdbx_mmcif_tutorial.py' adding 'iotbx/regression/tst_phases.py' adding 'iotbx/regression/tst_phil.py' adding 'iotbx/regression/tst_poscar.py' adding 'iotbx/regression/tst_reflection_file_editor.py' adding 'iotbx/regression/tst_reflection_file_reader.py' adding 'iotbx/regression/tst_reflection_file_utils.py' adding 'iotbx/regression/tst_reflection_statistics.py' adding 'iotbx/regression/tst_reindex.py' adding 'iotbx/regression/tst_restraints_merge.py' adding 'iotbx/regression/tst_selected_hierarchy_flip.py' adding 'iotbx/regression/tst_show_systematic_absences.py' adding 'iotbx/regression/tst_simple_map_coefficients.py' adding 'iotbx/regression/tst_simple_parser.py' adding 'iotbx/regression/tst_sort_atoms.py' adding 'iotbx/regression/tst_split_data_cif.py' adding 'iotbx/regression/tst_split_models.py' adding 'iotbx/regression/tst_symmetry.py' adding 'iotbx/regression/tst_wildcard.py' adding 'iotbx/regression/tst_xray_scale.py' adding 'iotbx/regression/utils.py' adding 'iotbx/regression/ncs/__init__.py' adding 'iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py' adding 'iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py' adding 'iotbx/regression/ncs/tst_ncs.py' adding 'iotbx/regression/ncs/tst_ncs_groups_preprocessing.py' adding 'iotbx/regression/ncs/tst_ncs_input.py' adding 'iotbx/regression/ncs/tst_ncs_reordered_chains.py' adding 'iotbx/regression/ncs/tst_ncs_search_broken_chain.py' adding 'iotbx/regression/ncs/tst_ncs_search_ligs.py' adding 'iotbx/regression/ncs/tst_ncs_search_shortcut_1.py' adding 'iotbx/regression/ncs/tst_ncs_user_selections.py' adding 'iotbx/regression/ncs/tst_ncs_without_validation.py' adding 'iotbx/scalepack/__init__.py' adding 'iotbx/scalepack/crystal_symmetry_from_hkl.py' adding 'iotbx/scalepack/merge.py' adding 'iotbx/scalepack/no_merge_original_index.py' adding 'iotbx/scalepack/space_group_dictionary.py' adding 'iotbx/scalepack/tst_merge.py' adding 'iotbx/scalepack/tst_no_merge_original_index.py' adding 'iotbx/shelx/__init__.py' adding 'iotbx/shelx/crystal_symmetry_from_ins.py' adding 'iotbx/shelx/errors.py' adding 'iotbx/shelx/fcf.py' adding 'iotbx/shelx/fvar_encoding.py' adding 'iotbx/shelx/hklf.py' adding 'iotbx/shelx/lexer.py' adding 'iotbx/shelx/parsers.py' adding 'iotbx/shelx/tokens.py' adding 'iotbx/shelx/tst_fvar_encoding.py' adding 'iotbx/shelx/tst_hklf.py' adding 'iotbx/shelx/tst_lex_parse_build.py' adding 'iotbx/shelx/tst_writer.py' adding 'iotbx/shelx/write_ins.py' adding 'iotbx/shelx/writer.py' adding 'iotbx/solve/__init__.py' adding 'iotbx/solve/crystal_symmetry_from_inp.py' adding 'iotbx/solve/fpfm_reader.py' adding 'iotbx/xds/__init__.py' adding 'iotbx/xds/blank_cbf.py' adding 'iotbx/xds/correction.py' adding 'iotbx/xds/crystal_symmetry_from_hkl.py' adding 'iotbx/xds/gain_cbf.py' adding 'iotbx/xds/geometry.py' adding 'iotbx/xds/integrate_hkl.py' adding 'iotbx/xds/read_ascii.py' adding 'iotbx/xds/spot_xds.py' adding 'iotbx/xds/xds_cbf.py' adding 'iotbx/xds/xds_inp.py' adding 'iotbx/xds/xparm.py' adding 'iotbx/xplor/__init__.py' adding 'iotbx/xplor/crystal_symmetry_from_map.py' adding 'iotbx/xplor/ext.py' adding 'iotbx/xplor/map.py' adding 'iotbx/xplor/tst_xplormap.py' adding 'libtbx/__init__.py' adding 'libtbx/assert_utils.py' adding 'libtbx/binary_search.py' adding 'libtbx/callbacks.py' adding 'libtbx/citations.py' adding 'libtbx/clear_paths.py' adding 'libtbx/cli.py' adding 'libtbx/cluster.py' adding 'libtbx/clusterTests.py' adding 'libtbx/code_analysis.py' adding 'libtbx/complex_math.py' adding 'libtbx/configure.py' adding 'libtbx/console_utils.py' adding 'libtbx/containers.py' adding 'libtbx/cpp_function_name.py' adding 'libtbx/crossmingw.py' adding 'libtbx/dlite.py' adding 'libtbx/easy_mp.py' adding 'libtbx/easy_pickle.py' adding 'libtbx/easy_profile.py' adding 'libtbx/easy_run.py' adding 'libtbx/env_config.py' adding 'libtbx/file_clutter.py' adding 'libtbx/find_reference_cycles.py' adding 'libtbx/forward_compatibility.py' adding 'libtbx/introspection.py' adding 'libtbx/libtbx_refresh.py' adding 'libtbx/load_env.py' adding 'libtbx/log.py' adding 'libtbx/math_utils.py' adding 'libtbx/metric_prefixes.py' adding 'libtbx/mpi4py.py' adding 'libtbx/object_oriented_patterns.py' adding 'libtbx/objgraph.py' adding 'libtbx/option_parser.py' adding 'libtbx/path.py' adding 'libtbx/pkg_utils.py' adding 'libtbx/program_template.py' adding 'libtbx/progress.py' adding 'libtbx/pyframe.py' adding 'libtbx/pyplot.py' adding 'libtbx/python_code_parsing.py' adding 'libtbx/resource_monitor.py' adding 'libtbx/run_tests.py' adding 'libtbx/runtime_utils.py' adding 'libtbx/simplexml.py' adding 'libtbx/smart_open.py' adding 'libtbx/start_print_trace.py' adding 'libtbx/str_utils.py' adding 'libtbx/subprocess_with_fixes.py' adding 'libtbx/table_utils.py' adding 'libtbx/thread_utils.py' adding 'libtbx/topological_sort.py' adding 'libtbx/try_hello_world_c.py' adding 'libtbx/tst_add_docstrings_with_ai.py' adding 'libtbx/tst_binary_search.py' adding 'libtbx/tst_citations.py' adding 'libtbx/tst_containers.py' adding 'libtbx/tst_dlite.py' adding 'libtbx/tst_easy_mp.py' adding 'libtbx/tst_easy_mp_multicore.py' adding 'libtbx/tst_easy_mp_state.py' adding 'libtbx/tst_easy_pickle.py' adding 'libtbx/tst_find_unused_imports.py' adding 'libtbx/tst_fully_buffered_timeout.py' adding 'libtbx/tst_mahalanobis.py' adding 'libtbx/tst_math_utils.py' adding 'libtbx/tst_object_oriented_patterns.py' adding 'libtbx/tst_path.py' adding 'libtbx/tst_program_template.py' adding 'libtbx/tst_python_code_parsing.py' adding 'libtbx/tst_representation.py' adding 'libtbx/tst_run_tests_parallel_retry.py' adding 'libtbx/tst_run_tests_parallel_unique_dirs.py' adding 'libtbx/tst_runtime_utils.py' adding 'libtbx/tst_scheduling.py' adding 'libtbx/tst_str_utils.py' adding 'libtbx/tst_thread_utils.py' adding 'libtbx/tst_topological_sort.py' adding 'libtbx/tst_utils.py' adding 'libtbx/tst_version.py' adding 'libtbx/tst_word_index_generator.py' adding 'libtbx/tst_xmlrpc_utils.py' adding 'libtbx/utils.py' adding 'libtbx/version.py' adding 'libtbx/wingide.py' adding 'libtbx/word_index_generator.py' adding 'libtbx/xmlrpc_server_example.py' adding 'libtbx/xmlrpc_utils.py' adding 'libtbx/auto_build/__init__.py' adding 'libtbx/auto_build/bootstrap.py' adding 'libtbx/auto_build/create_cctbx_bundle_for_installer.py' adding 'libtbx/auto_build/create_installer.py' adding 'libtbx/auto_build/create_mac_app.py' adding 'libtbx/auto_build/create_mac_pkg.py' adding 'libtbx/auto_build/create_windows_exe.py' adding 'libtbx/auto_build/create_windows_installer.py' adding 'libtbx/auto_build/install_base_packages.py' adding 'libtbx/auto_build/install_conda.py' adding 'libtbx/auto_build/install_distribution.py' adding 'libtbx/auto_build/installer_utils.py' adding 'libtbx/auto_build/make_bundle.py' adding 'libtbx/auto_build/package_defs.py' adding 'libtbx/auto_build/plus_installer.py' adding 'libtbx/auto_build/regenerate_module_files.py' adding 'libtbx/auto_build/rpath.py' adding 'libtbx/auto_build/setup_installer.py' adding 'libtbx/auto_build/write_gui_dispatcher_include.py' adding 'libtbx/bundle/__init__.py' adding 'libtbx/bundle/copy_all.py' adding 'libtbx/bundle/copy_build_libtbx.py' adding 'libtbx/bundle/copy_runtime_sources.py' adding 'libtbx/bundle/install_bat.py' adding 'libtbx/bundle/install_csh.py' adding 'libtbx/bundle/utils.py' adding 'libtbx/command_line/__init__.py' adding 'libtbx/command_line/add_docstrings_with_ai.py' adding 'libtbx/command_line/analyse_code_comments.py' adding 'libtbx/command_line/any2unix.py' adding 'libtbx/command_line/assert_line_count.py' adding 'libtbx/command_line/assert_not_show_diff.py' adding 'libtbx/command_line/assert_stdin.py' adding 'libtbx/command_line/assert_stdin_contains_strings.py' adding 'libtbx/command_line/assert_stdin_ends_with.py' adding 'libtbx/command_line/bootstrap.py' adding 'libtbx/command_line/bundle_as_exe.py' adding 'libtbx/command_line/cctbx_chunk.py' adding 'libtbx/command_line/check_libcpp.py' adding 'libtbx/command_line/clean_clutter.py' adding 'libtbx/command_line/clear_paths.py' adding 'libtbx/command_line/create_cctbx_bundle_for_installer.py' adding 'libtbx/command_line/create_install_script_bat.py' adding 'libtbx/command_line/create_installer.py' adding 'libtbx/command_line/create_mac_app.py' adding 'libtbx/command_line/create_selfx.py' adding 'libtbx/command_line/create_unzipsfx.py' adding 'libtbx/command_line/create_windows_exe.py' adding 'libtbx/command_line/dtrace.py' adding 'libtbx/command_line/easy_qsub.py' adding 'libtbx/command_line/env_run.py' adding 'libtbx/command_line/epydoc_run.py' adding 'libtbx/command_line/extract_code_from_txt.py' adding 'libtbx/command_line/find_clutter.py' adding 'libtbx/command_line/find_files.py' adding 'libtbx/command_line/find_in_repositories.py' adding 'libtbx/command_line/find_old_style_classes.py' adding 'libtbx/command_line/find_pdb_mmcif_problems.py' adding 'libtbx/command_line/find_reserved_names.py' adding 'libtbx/command_line/find_under_build.py' adding 'libtbx/command_line/find_untested.py' adding 'libtbx/command_line/find_unused_imports.py' adding 'libtbx/command_line/find_unused_imports_crude.py' adding 'libtbx/command_line/git_avoid_merges.py' adding 'libtbx/command_line/help.py' adding 'libtbx/command_line/import_all_ext.py' adding 'libtbx/command_line/import_all_python.py' adding 'libtbx/command_line/install.py' adding 'libtbx/command_line/install_conda.py' adding 'libtbx/command_line/ipython_shell_start.py' adding 'libtbx/command_line/line_count.py' adding 'libtbx/command_line/list_files.py' adding 'libtbx/command_line/list_modules.py' adding 'libtbx/command_line/list_source_files_sorted_by_size.py' adding 'libtbx/command_line/make_dist.py' adding 'libtbx/command_line/make_sphinx_html.py' adding 'libtbx/command_line/nequal.py' adding 'libtbx/command_line/parallel_simple.py' adding 'libtbx/command_line/path_utility.py' adding 'libtbx/command_line/phil.py' adding 'libtbx/command_line/prime_factors_of.py' adding 'libtbx/command_line/printenv.py' adding 'libtbx/command_line/py_compile_all.py' adding 'libtbx/command_line/raise_exception_for_testing.py' adding 'libtbx/command_line/reindent.py' adding 'libtbx/command_line/remote_processing.py' adding 'libtbx/command_line/remove_tree.py' adding 'libtbx/command_line/remove_unused_imports.py' adding 'libtbx/command_line/resource_monitor_plot.py' adding 'libtbx/command_line/run_pickled_function.py' adding 'libtbx/command_line/run_tests_parallel.py' adding 'libtbx/command_line/scons.py' adding 'libtbx/command_line/seconds_since_the_epoch.py' adding 'libtbx/command_line/sge_available_slots.py' adding 'libtbx/command_line/sge_qstat_counts.py' adding 'libtbx/command_line/show_all_on_path.py' adding 'libtbx/command_line/show_bin_path.py' adding 'libtbx/command_line/show_build_options.py' adding 'libtbx/command_line/show_build_path.py' adding 'libtbx/command_line/show_but_no_repr.py' adding 'libtbx/command_line/show_commands.py' adding 'libtbx/command_line/show_date_and_time.py' adding 'libtbx/command_line/show_dist_paths.py' adding 'libtbx/command_line/show_env.py' adding 'libtbx/command_line/show_environ_usage.py' adding 'libtbx/command_line/show_full_command_path.py' adding 'libtbx/command_line/show_host_and_user.py' adding 'libtbx/command_line/show_include_paths.py' adding 'libtbx/command_line/show_lib_path.py' adding 'libtbx/command_line/show_module_dependencies.py' adding 'libtbx/command_line/show_number_of_processors.py' adding 'libtbx/command_line/show_numeric_version.py' adding 'libtbx/command_line/show_numpy_version.py' adding 'libtbx/command_line/show_python_dependencies.py' adding 'libtbx/command_line/show_python_sys_executable.py' adding 'libtbx/command_line/show_pythonpath.py' adding 'libtbx/command_line/show_repository_paths.py' adding 'libtbx/command_line/show_tests.py' adding 'libtbx/command_line/show_variable_names.py' adding 'libtbx/command_line/sphinx_build.py' adding 'libtbx/command_line/start_binary_bundle.py' adding 'libtbx/command_line/start_process.py' adding 'libtbx/command_line/wait_for_file.py' adding 'libtbx/development/__init__.py' adding 'libtbx/development/except_Exception.py' adding 'libtbx/development/timers.py' adding 'libtbx/development/xcode_build_phase.py' adding 'libtbx/langchain/__init__.py' adding 'libtbx/langchain/phenix_knowledge.py' adding 'libtbx/langchain/run_build_db.py' adding 'libtbx/langchain/run_inspect_db.py' adding 'libtbx/langchain/run_query_docs.py' adding 'libtbx/langchain/agent/__init__.py' adding 'libtbx/langchain/agent/advice_preprocessor.py' adding 'libtbx/langchain/agent/api_client.py' adding 'libtbx/langchain/agent/best_files_tracker.py' adding 'libtbx/langchain/agent/command_builder.py' adding 'libtbx/langchain/agent/command_postprocessor.py' adding 'libtbx/langchain/agent/config_loader.py' adding 'libtbx/langchain/agent/contract.py' adding 'libtbx/langchain/agent/directive_extractor.py' adding 'libtbx/langchain/agent/directive_validator.py' adding 'libtbx/langchain/agent/display_data_model.py' adding 'libtbx/langchain/agent/docs_tools.py' adding 'libtbx/langchain/agent/dry_run_manager.py' adding 'libtbx/langchain/agent/error_analyzer.py' adding 'libtbx/langchain/agent/error_classifier.py' adding 'libtbx/langchain/agent/event_formatter.py' adding 'libtbx/langchain/agent/event_log.py' adding 'libtbx/langchain/agent/failure_diagnoser.py' adding 'libtbx/langchain/agent/file_metadata.py' adding 'libtbx/langchain/agent/file_utils.py' adding 'libtbx/langchain/agent/format_validation.py' adding 'libtbx/langchain/agent/gate_evaluator.py' adding 'libtbx/langchain/agent/generate_logic_doc.py' adding 'libtbx/langchain/agent/generate_safety_docs.py' adding 'libtbx/langchain/agent/graph.py' adding 'libtbx/langchain/agent/graph_nodes.py' adding 'libtbx/langchain/agent/graph_state.py' adding 'libtbx/langchain/agent/hypothesis_evaluator.py' adding 'libtbx/langchain/agent/intent_classifier.py' adding 'libtbx/langchain/agent/kb_tags.py' adding 'libtbx/langchain/agent/log_section_extractor.py' adding 'libtbx/langchain/agent/memory.py' adding 'libtbx/langchain/agent/metric_evaluator.py' adding 'libtbx/langchain/agent/metrics_analyzer.py' adding 'libtbx/langchain/agent/nl_to_phil.py' adding 'libtbx/langchain/agent/pattern_manager.py' adding 'libtbx/langchain/agent/perceive_checks.py' adding 'libtbx/langchain/agent/phenix_utils.py' adding 'libtbx/langchain/agent/phil_validator.py' adding 'libtbx/langchain/agent/placement_checker.py' adding 'libtbx/langchain/agent/plan_generator.py' adding 'libtbx/langchain/agent/planner.py' adding 'libtbx/langchain/agent/program_registry.py' adding 'libtbx/langchain/agent/program_validator.py' adding 'libtbx/langchain/agent/rate_limit_handler.py' adding 'libtbx/langchain/agent/rules_selector.py' adding 'libtbx/langchain/agent/sanity_checker.py' adding 'libtbx/langchain/agent/session.py' adding 'libtbx/langchain/agent/session_tools.py' adding 'libtbx/langchain/agent/strategy_memory.py' adding 'libtbx/langchain/agent/structure_model.py' adding 'libtbx/langchain/agent/template_builder.py' adding 'libtbx/langchain/agent/thinking_agent.py' adding 'libtbx/langchain/agent/transport.py' adding 'libtbx/langchain/agent/tst_agent_enhancements.py' adding 'libtbx/langchain/agent/utils.py' adding 'libtbx/langchain/agent/validation_history.py' adding 'libtbx/langchain/agent/validation_inspector.py' adding 'libtbx/langchain/agent/workflow_engine.py' adding 'libtbx/langchain/agent/workflow_state.py' adding 'libtbx/langchain/agent/yaml_tools.py' adding 'libtbx/langchain/analysis/__init__.py' adding 'libtbx/langchain/analysis/agent_session_analyzer.py' adding 'libtbx/langchain/analysis/analyzer.py' adding 'libtbx/langchain/analysis/log_info.py' adding 'libtbx/langchain/analysis/state_extractor.py' adding 'libtbx/langchain/analysis/summarizer.py' adding 'libtbx/langchain/commands/__init__.py' adding 'libtbx/langchain/commands/base.py' adding 'libtbx/langchain/core/__init__.py' adding 'libtbx/langchain/core/llm.py' adding 'libtbx/langchain/core/types.py' adding 'libtbx/langchain/examples/__init__.py' adding 'libtbx/langchain/knowledge/__init__.py' adding 'libtbx/langchain/knowledge/api_schema.py' adding 'libtbx/langchain/knowledge/explanation_prompts.py' adding 'libtbx/langchain/knowledge/html_report_template.py' adding 'libtbx/langchain/knowledge/kb_loader.py' adding 'libtbx/langchain/knowledge/metric_patterns.py' adding 'libtbx/langchain/knowledge/phenix_programs.py' adding 'libtbx/langchain/knowledge/plan_schema.py' adding 'libtbx/langchain/knowledge/plan_template_loader.py' adding 'libtbx/langchain/knowledge/program_registration.py' adding 'libtbx/langchain/knowledge/prompts.py' adding 'libtbx/langchain/knowledge/prompts_hybrid.py' adding 'libtbx/langchain/knowledge/summary_display.py' adding 'libtbx/langchain/knowledge/thinking_prompts.py' adding 'libtbx/langchain/knowledge/yaml_loader.py' adding 'libtbx/langchain/rag/__init__.py' adding 'libtbx/langchain/rag/document_loader.py' adding 'libtbx/langchain/rag/retriever.py' adding 'libtbx/langchain/rag/vector_store.py' adding 'libtbx/langchain/strategies/__init__.py' adding 'libtbx/langchain/strategies/base.py' adding 'libtbx/langchain/tests/__init__.py' adding 'libtbx/langchain/tests/analyze_tutorial_runs.py' adding 'libtbx/langchain/tests/audit_phase_rename.py' adding 'libtbx/langchain/tests/run_all_tests.py' adding 'libtbx/langchain/tests/test_api_keys.py' adding 'libtbx/langchain/tests/tst_abort_message_all_stops.py' adding 'libtbx/langchain/tests/tst_action_item_1.py' adding 'libtbx/langchain/tests/tst_advice_preprocessing.py' adding 'libtbx/langchain/tests/tst_api_schema.py' adding 'libtbx/langchain/tests/tst_audit_fixes.py' adding 'libtbx/langchain/tests/tst_autosol_bugs.py' adding 'libtbx/langchain/tests/tst_backward_compat.py' adding 'libtbx/langchain/tests/tst_best_files_tracker.py' adding 'libtbx/langchain/tests/tst_command_builder.py' adding 'libtbx/langchain/tests/tst_contract_compliance.py' adding 'libtbx/langchain/tests/tst_copies_tracking.py' adding 'libtbx/langchain/tests/tst_decision_flow.py' adding 'libtbx/langchain/tests/tst_diagnosed_failure_stop.py' adding 'libtbx/langchain/tests/tst_directive_extractor.py' adding 'libtbx/langchain/tests/tst_directive_validator.py' adding 'libtbx/langchain/tests/tst_directives_integration.py' adding 'libtbx/langchain/tests/tst_display_data_model.py' adding 'libtbx/langchain/tests/tst_docs_tools.py' adding 'libtbx/langchain/tests/tst_dry_run.py' adding 'libtbx/langchain/tests/tst_error_analyzer.py' adding 'libtbx/langchain/tests/tst_error_classifier.py' adding 'libtbx/langchain/tests/tst_event_formatter_file_categories.py' adding 'libtbx/langchain/tests/tst_event_system.py' adding 'libtbx/langchain/tests/tst_explanation_prompts.py' adding 'libtbx/langchain/tests/tst_fabricated_stop_condition.py' adding 'libtbx/langchain/tests/tst_file_categorization.py' adding 'libtbx/langchain/tests/tst_file_utils.py' adding 'libtbx/langchain/tests/tst_fix_verification.py' adding 'libtbx/langchain/tests/tst_gate_evaluator.py' adding 'libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py' adding 'libtbx/langchain/tests/tst_hardcoded_cleanup.py' adding 'libtbx/langchain/tests/tst_history_analysis.py' adding 'libtbx/langchain/tests/tst_hypothesis_evaluator.py' adding 'libtbx/langchain/tests/tst_integration.py' adding 'libtbx/langchain/tests/tst_intent_classifier.py' adding 'libtbx/langchain/tests/tst_langchain_tools.py' adding 'libtbx/langchain/tests/tst_log_extractor.py' adding 'libtbx/langchain/tests/tst_metric_patterns.py' adding 'libtbx/langchain/tests/tst_metrics_analyzer.py' adding 'libtbx/langchain/tests/tst_mtz_crosscheck.py' adding 'libtbx/langchain/tests/tst_mtz_phases_session_blocking.py' adding 'libtbx/langchain/tests/tst_n_bugs.py' adding 'libtbx/langchain/tests/tst_new_programs.py' adding 'libtbx/langchain/tests/tst_old_client_compat.py' adding 'libtbx/langchain/tests/tst_pattern_manager.py' adding 'libtbx/langchain/tests/tst_perceive_stop_checks.py' adding 'libtbx/langchain/tests/tst_phase0_static_audit.py' adding 'libtbx/langchain/tests/tst_phase1_contract_gaps.py' adding 'libtbx/langchain/tests/tst_phase2_path_consistency.py' adding 'libtbx/langchain/tests/tst_phase3_bug5.py' adding 'libtbx/langchain/tests/tst_phase3_serialization_symmetry.py' adding 'libtbx/langchain/tests/tst_phase4_history_flags.py' adding 'libtbx/langchain/tests/tst_phase5_error_classification.py' adding 'libtbx/langchain/tests/tst_phase6_category_consumer.py' adding 'libtbx/langchain/tests/tst_phase7_routing_simulation.py' adding 'libtbx/langchain/tests/tst_phase8_command_building.py' adding 'libtbx/langchain/tests/tst_phase9_llm_perturbation.py' adding 'libtbx/langchain/tests/tst_phaser_multimodel.py' adding 'libtbx/langchain/tests/tst_phil_validation.py' adding 'libtbx/langchain/tests/tst_plan_generator.py' adding 'libtbx/langchain/tests/tst_plan_schema.py' adding 'libtbx/langchain/tests/tst_program_registration.py' adding 'libtbx/langchain/tests/tst_sanity_checker.py' adding 'libtbx/langchain/tests/tst_scenario_tracer.py' adding 'libtbx/langchain/tests/tst_session_directives.py' adding 'libtbx/langchain/tests/tst_session_summary.py' adding 'libtbx/langchain/tests/tst_session_tools.py' adding 'libtbx/langchain/tests/tst_shared_code_imports.py' adding 'libtbx/langchain/tests/tst_silent_stop_abort_messages.py' adding 'libtbx/langchain/tests/tst_state_serialization.py' adding 'libtbx/langchain/tests/tst_stop_condition_fix.py' adding 'libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py' adding 'libtbx/langchain/tests/tst_stop_reason_codes.py' adding 'libtbx/langchain/tests/tst_stop_reason_prompt.py' adding 'libtbx/langchain/tests/tst_strategy_memory.py' adding 'libtbx/langchain/tests/tst_structure_model.py' adding 'libtbx/langchain/tests/tst_summary_display.py' adding 'libtbx/langchain/tests/tst_template.py' adding 'libtbx/langchain/tests/tst_thinking_agent.py' adding 'libtbx/langchain/tests/tst_thinking_defense.py' adding 'libtbx/langchain/tests/tst_transport.py' adding 'libtbx/langchain/tests/tst_utils.py' adding 'libtbx/langchain/tests/tst_v112_13_fixes.py' adding 'libtbx/langchain/tests/tst_validate_file_overrides.py' adding 'libtbx/langchain/tests/tst_validation_history.py' adding 'libtbx/langchain/tests/tst_workflow_complete_stop.py' adding 'libtbx/langchain/tests/tst_workflow_state.py' adding 'libtbx/langchain/tests/tst_yaml_config.py' adding 'libtbx/langchain/tests/tst_yaml_tools.py' adding 'libtbx/langchain/tests/integration/__init__.py' adding 'libtbx/langchain/utils/__init__.py' adding 'libtbx/langchain/utils/query.py' adding 'libtbx/langchain/utils/run_utils.py' adding 'libtbx/langchain/utils/text_processing.py' adding 'libtbx/langchain/validation/__init__.py' adding 'libtbx/langchain/validation/base.py' adding 'libtbx/langchain/validation/core_validator.py' adding 'libtbx/langchain/validation/mtz_utils.py' adding 'libtbx/langchain/validation/phenix_refine.py' adding 'libtbx/langchain/validation/registry.py' adding 'libtbx/phil/__init__.py' adding 'libtbx/phil/command_line.py' adding 'libtbx/phil/experimental.py' adding 'libtbx/phil/gui_objects.py' adding 'libtbx/phil/interface.py' adding 'libtbx/phil/parser.py' adding 'libtbx/phil/tokenizer.py' adding 'libtbx/phil/tst.py' adding 'libtbx/phil/tst_experimental.py' adding 'libtbx/phil/tst_interface.py' adding 'libtbx/phil/tst_tokenizer.py' adding 'libtbx/program_utils/__init__.py' adding 'libtbx/program_utils/result.py' adding 'libtbx/program_utils/statistics_info.py' adding 'libtbx/queuing_system_utils/__init__.py' adding 'libtbx/queuing_system_utils/communication.py' adding 'libtbx/queuing_system_utils/generic.py' adding 'libtbx/queuing_system_utils/looping.py' adding 'libtbx/queuing_system_utils/lsf.py' adding 'libtbx/queuing_system_utils/pbs_utils.py' adding 'libtbx/queuing_system_utils/remote.py' adding 'libtbx/queuing_system_utils/scheduling.py' adding 'libtbx/queuing_system_utils/scheduling_helpers.py' adding 'libtbx/queuing_system_utils/sge_utils.py' adding 'libtbx/queuing_system_utils/tst.py' adding 'libtbx/queuing_system_utils/processing/__init__.py' adding 'libtbx/queuing_system_utils/processing/errors.py' adding 'libtbx/queuing_system_utils/processing/polling.py' adding 'libtbx/queuing_system_utils/processing/status.py' adding 'libtbx/queuing_system_utils/processing/submission.py' adding 'libtbx/queuing_system_utils/processing/transfer.py' adding 'libtbx/queuing_system_utils/processing/util.py' adding 'libtbx/scheduling/__init__.py' adding 'libtbx/scheduling/cluster_handler.py' adding 'libtbx/scheduling/file_queue.py' adding 'libtbx/scheduling/job_scheduler.py' adding 'libtbx/scheduling/mainthread.py' adding 'libtbx/scheduling/mp_handler.py' adding 'libtbx/scheduling/parallel_for.py' adding 'libtbx/scheduling/philgen.py' adding 'libtbx/scheduling/process_pool.py' adding 'libtbx/scheduling/result.py' adding 'libtbx/scheduling/shared_resource.py' adding 'libtbx/scheduling/socket_queue.py' adding 'libtbx/scheduling/stacktrace.py' adding 'libtbx/scheduling/thread_handler.py' adding 'libtbx/server/FileClient.py' adding 'libtbx/server/FileServer.py' adding 'libtbx/server/FileSocket.py' adding 'libtbx/server/SocketServer.py' adding 'libtbx/server/StartServer.py' adding 'libtbx/server/__init__.py' adding 'libtbx/sphinx/__init__.py' adding 'libtbx/sphinx/phil.py' adding 'libtbx/sphinx/pubmed.py' adding 'libtbx/sphinx/python_string.py' adding 'libtbx/test_utils/__init__.py' adding 'libtbx/test_utils/parallel.py' adding 'mmtbx/__init__.py' adding 'mmtbx/arrays.py' adding 'mmtbx/clashes.py' adding 'mmtbx/domains_from_pae.py' adding 'mmtbx/f_model_info.py' adding 'mmtbx/find_peaks.py' adding 'mmtbx/grow_density.py' adding 'mmtbx/invariant_domain.py' adding 'mmtbx/lattice.py' adding 'mmtbx/libtbx_refresh.py' adding 'mmtbx/map_tools.py' adding 'mmtbx/model_vs_data.py' adding 'mmtbx/msa.py' adding 'mmtbx/pdb_distances.py' adding 'mmtbx/pdb_symmetry.py' adding 'mmtbx/pdbtools.py' adding 'mmtbx/process_predicted_model.py' adding 'mmtbx/proq2.py' adding 'mmtbx/real_space_correlation.py' adding 'mmtbx/resolve_resources.py' adding 'mmtbx/restraints.py' adding 'mmtbx/run_tests.py' adding 'mmtbx/superpose.py' adding 'mmtbx/xmanip.py' adding 'mmtbx/xmanip_tasks.py' adding 'mmtbx/alignment/__init__.py' adding 'mmtbx/atomic_environment_vectors/__init__.py' adding 'mmtbx/atomic_environment_vectors/tst.py' adding 'mmtbx/building/__init__.py' adding 'mmtbx/building/cablam_idealization.py' adding 'mmtbx/building/extend_sidechains.py' adding 'mmtbx/building/loop_idealization.py' adding 'mmtbx/building/merge_models.py' adding 'mmtbx/building/minimize_chain.py' adding 'mmtbx/building/tst_extend_sidechains.py' adding 'mmtbx/building/tst_extend_sidechains_2.py' adding 'mmtbx/building/ligands/__init__.py' adding 'mmtbx/building/ligands/lifi.py' adding 'mmtbx/building/ligands/tst_00.py' adding 'mmtbx/building/loop_closure/__init__.py' adding 'mmtbx/building/loop_closure/berkeley_ramalyze.py' adding 'mmtbx/building/loop_closure/ccd.py' adding 'mmtbx/building/loop_closure/starting_conformations.py' adding 'mmtbx/building/loop_closure/utils.py' adding 'mmtbx/bulk_solvent/__init__.py' adding 'mmtbx/bulk_solvent/bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/example.py' adding 'mmtbx/bulk_solvent/example2.py' adding 'mmtbx/bulk_solvent/f_model_all_scales.py' adding 'mmtbx/bulk_solvent/kbu_refinery.py' adding 'mmtbx/bulk_solvent/mosaic.py' adding 'mmtbx/bulk_solvent/multi_mask_bulk_solvent.py' adding 'mmtbx/bulk_solvent/scaler.py' adding 'mmtbx/bulk_solvent/tst_aniso_scaler.py' adding 'mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py' adding 'mmtbx/bulk_solvent/tst_flat_nonuniform.py' adding 'mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py' adding 'mmtbx/bulk_solvent/tst_mosaic.py' adding 'mmtbx/bulk_solvent/tst_scaler.py' adding 'mmtbx/chemical_components/__init__.py' adding 'mmtbx/chemical_components/cif_parser.py' adding 'mmtbx/chemical_components/tst.py' adding 'mmtbx/command_line/__init__.py' adding 'mmtbx/command_line/altloc_remediate.py' adding 'mmtbx/command_line/angle.py' adding 'mmtbx/command_line/apply_ncs_to_ligand.py' adding 'mmtbx/command_line/arginine_geometry.py' adding 'mmtbx/command_line/atom_valence_simple.py' adding 'mmtbx/command_line/barbed_wire_analysis.py' adding 'mmtbx/command_line/cablam.py' adding 'mmtbx/command_line/cablam_idealization.py' adding 'mmtbx/command_line/cbetadev.py' adding 'mmtbx/command_line/cc_star.py' adding 'mmtbx/command_line/chiral_validation.py' adding 'mmtbx/command_line/cif_as_mtz.py' adding 'mmtbx/command_line/clashscore.py' adding 'mmtbx/command_line/clashscore2.py' adding 'mmtbx/command_line/comparama.py' adding 'mmtbx/command_line/debug_riding.py' adding 'mmtbx/command_line/density_modification.py' adding 'mmtbx/command_line/development_aev.py' adding 'mmtbx/command_line/development_fem.py' adding 'mmtbx/command_line/distance_difference.py' adding 'mmtbx/command_line/dynamics.py' adding 'mmtbx/command_line/electrons.py' adding 'mmtbx/command_line/emringer.py' adding 'mmtbx/command_line/emringer_score.py' adding 'mmtbx/command_line/estimate_bijvoet_ratio.py' adding 'mmtbx/command_line/f000.py' adding 'mmtbx/command_line/fab_elbow_angle.py' adding 'mmtbx/command_line/fake_f_obs.py' adding 'mmtbx/command_line/fetch_pdb.py' adding 'mmtbx/command_line/find_peaks_holes.py' adding 'mmtbx/command_line/find_residue_in_pdb.py' adding 'mmtbx/command_line/find_tls_groups.py' adding 'mmtbx/command_line/fmodel.py' adding 'mmtbx/command_line/fobs_minus_fobs_map.py' adding 'mmtbx/command_line/geometry_minimization.py' adding 'mmtbx/command_line/grow_density.py' adding 'mmtbx/command_line/hbond.py' adding 'mmtbx/command_line/helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/command_line/holton_geometry_validation.py' adding 'mmtbx/command_line/hydrogenate.py' adding 'mmtbx/command_line/kinemage.py' adding 'mmtbx/command_line/ligand_restraints_validation.py' adding 'mmtbx/command_line/map_box.py' adding 'mmtbx/command_line/map_comparison.py' adding 'mmtbx/command_line/map_to_model_histogram.py' adding 'mmtbx/command_line/map_to_structure_factors.py' adding 'mmtbx/command_line/maps.py' adding 'mmtbx/command_line/mask.py' adding 'mmtbx/command_line/massage_data.py' adding 'mmtbx/command_line/matthews.py' adding 'mmtbx/command_line/maximum_entropy_map.py' adding 'mmtbx/command_line/model_idealization.py' adding 'mmtbx/command_line/model_map.py' adding 'mmtbx/command_line/model_model_distances.py' adding 'mmtbx/command_line/model_vs_data.py' adding 'mmtbx/command_line/model_vs_map.py' adding 'mmtbx/command_line/model_vs_sequence.py' adding 'mmtbx/command_line/models_as_chains.py' adding 'mmtbx/command_line/molprobity.py' adding 'mmtbx/command_line/mon_lib_cif_triage.py' adding 'mmtbx/command_line/mp_geo.py' adding 'mmtbx/command_line/mp_validate_bonds.py' adding 'mmtbx/command_line/mtz2map.py' adding 'mmtbx/command_line/next_gen_atom_typing.py' adding 'mmtbx/command_line/nonbonded_overlaps.py' adding 'mmtbx/command_line/omegalyze.py' adding 'mmtbx/command_line/pdb_atom_selection.py' adding 'mmtbx/command_line/pdb_interpretation.py' adding 'mmtbx/command_line/pdbtools.py' adding 'mmtbx/command_line/perigee.py' adding 'mmtbx/command_line/plan_sad_experiment.py' adding 'mmtbx/command_line/polder.py' adding 'mmtbx/command_line/prepare_pdb_deposition.py' adding 'mmtbx/command_line/probe2.py' adding 'mmtbx/command_line/probescore_ligand.py' adding 'mmtbx/command_line/process_predicted_model.py' adding 'mmtbx/command_line/prune_model.py' adding 'mmtbx/command_line/quantum_interface.py' adding 'mmtbx/command_line/r_factor_statistics.py' adding 'mmtbx/command_line/rama_z.py' adding 'mmtbx/command_line/ramalyze.py' adding 'mmtbx/command_line/rank_scale_map.py' adding 'mmtbx/command_line/real_space_correlation.py' adding 'mmtbx/command_line/real_space_diff_map.py' adding 'mmtbx/command_line/rebuild_cablam_cache.py' adding 'mmtbx/command_line/rebuild_rotarama_cache.py' adding 'mmtbx/command_line/reciprocal_space_arrays.py' adding 'mmtbx/command_line/reduce2.py' adding 'mmtbx/command_line/reduce_cryoem_resolution.py' adding 'mmtbx/command_line/refine_anomalous_substructure.py' adding 'mmtbx/command_line/remove_outliers.py' adding 'mmtbx/command_line/ribbons.py' adding 'mmtbx/command_line/rigid_bond_test.py' adding 'mmtbx/command_line/ringer.py' adding 'mmtbx/command_line/rna_validate.py' adding 'mmtbx/command_line/rna_validate_bonds.py' adding 'mmtbx/command_line/rna_validate_puckers.py' adding 'mmtbx/command_line/rna_validate_suites.py' adding 'mmtbx/command_line/rotalyze.py' adding 'mmtbx/command_line/search_pdb_symmetry.py' adding 'mmtbx/command_line/secondary_structure_restraints.py' adding 'mmtbx/command_line/secondary_structure_validation.py' adding 'mmtbx/command_line/select_best_starting_model.py' adding 'mmtbx/command_line/show_r_factors_by_shell.py' adding 'mmtbx/command_line/sisa.py' adding 'mmtbx/command_line/sort_hetatms.py' adding 'mmtbx/command_line/ss_idealization.py' adding 'mmtbx/command_line/suitename.py' adding 'mmtbx/command_line/suitename_old.py' adding 'mmtbx/command_line/super.py' adding 'mmtbx/command_line/superpose.py' adding 'mmtbx/command_line/taam_minus_iam.py' adding 'mmtbx/command_line/table_one.py' adding 'mmtbx/command_line/tls.py' adding 'mmtbx/command_line/tls_analysis.py' adding 'mmtbx/command_line/tls_as_xyz.py' adding 'mmtbx/command_line/undowser.py' adding 'mmtbx/command_line/undowser2.py' adding 'mmtbx/command_line/validate_H_cl_app.py' adding 'mmtbx/command_line/validate_ligands.py' adding 'mmtbx/command_line/validation_summary.py' adding 'mmtbx/command_line/verify_mon_lib_data.py' adding 'mmtbx/command_line/water_b_factors.py' adding 'mmtbx/command_line/where_is_that_cif_file.py' adding 'mmtbx/command_line/xmanip.py' adding 'mmtbx/command_line/xtrapol8.py' adding 'mmtbx/command_line/xtriage.py' adding 'mmtbx/conformation_dependent_library/LinkedResidues.py' adding 'mmtbx/conformation_dependent_library/__init__.py' adding 'mmtbx/conformation_dependent_library/altloc_weighting.py' adding 'mmtbx/conformation_dependent_library/bond_angle_registry.py' adding 'mmtbx/conformation_dependent_library/cdl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_setup.py' adding 'mmtbx/conformation_dependent_library/cdl_svl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_utils.py' adding 'mmtbx/conformation_dependent_library/check_cdl_database.py' adding 'mmtbx/conformation_dependent_library/density_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/enol_peptide_restraints.py' adding 'mmtbx/conformation_dependent_library/histidines.py' adding 'mmtbx/conformation_dependent_library/hpdl_database.py' adding 'mmtbx/conformation_dependent_library/hydrogen_bonding.py' adding 'mmtbx/conformation_dependent_library/investigate_rotamer_space.py' adding 'mmtbx/conformation_dependent_library/mcl.py' adding 'mmtbx/conformation_dependent_library/mcl_sf4_coordination.py' adding 'mmtbx/conformation_dependent_library/metal_coordination_library.py' adding 'mmtbx/conformation_dependent_library/multi_base_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_cdl_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_class.py' adding 'mmtbx/conformation_dependent_library/nucleotides.py' adding 'mmtbx/conformation_dependent_library/omega.py' adding 'mmtbx/conformation_dependent_library/omega_database.py' adding 'mmtbx/conformation_dependent_library/pH_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/rdl_database.py' adding 'mmtbx/conformation_dependent_library/rotamers.py' adding 'mmtbx/conformation_dependent_library/sf4_restraints.py' adding 'mmtbx/conformation_dependent_library/testing_utils.py' adding 'mmtbx/conformation_dependent_library/tst_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_esd.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py' adding 'mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py' adding 'mmtbx/conformation_dependent_library/tst_enol_peptide.py' adding 'mmtbx/conformation_dependent_library/tst_hpdl.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_01.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_02.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_03.py' adding 'mmtbx/conformation_dependent_library/tst_multi_residue_rna.py' adding 'mmtbx/conformation_dependent_library/tst_mutli_residue.py' adding 'mmtbx/conformation_dependent_library/tst_omega_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_pH_mechanism.py' adding 'mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py' adding 'mmtbx/conformation_dependent_library/tst_rdl.py' adding 'mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py' adding 'mmtbx/conformation_dependent_library/utils.py' adding 'mmtbx/den/__init__.py' adding 'mmtbx/den/plot_weights.py' adding 'mmtbx/den/refinement.py' adding 'mmtbx/density_modification/__init__.py' adding 'mmtbx/density_modification/tst_density_modification.py' adding 'mmtbx/disorder/__init__.py' adding 'mmtbx/disorder/analyze_model.py' adding 'mmtbx/disorder/backbone.py' adding 'mmtbx/disorder/tst.py' adding 'mmtbx/disorder/tst_analyze_model.py' adding 'mmtbx/disorder/tst_backbone.py' adding 'mmtbx/dynamics/__init__.py' adding 'mmtbx/dynamics/cartesian_dynamics.py' adding 'mmtbx/dynamics/constants.py' adding 'mmtbx/dynamics/ensemble_cd.py' adding 'mmtbx/dynamics/simulated_annealing.py' adding 'mmtbx/dynamics/tst_cartesian_dynamics.py' adding 'mmtbx/dynamics/tst_sa.py' adding 'mmtbx/f_model/__init__.py' adding 'mmtbx/f_model/f_model.py' adding 'mmtbx/f_model/f_model_info.py' adding 'mmtbx/geometry/__init__.py' adding 'mmtbx/geometry/altloc.py' adding 'mmtbx/geometry/asa.py' adding 'mmtbx/geometry/clash.py' adding 'mmtbx/geometry/indexing.py' adding 'mmtbx/geometry/shared_types.py' adding 'mmtbx/geometry/sphere_surface_sampling.py' adding 'mmtbx/geometry/topology.py' adding 'mmtbx/geometry_restraints/__init__.py' adding 'mmtbx/geometry_restraints/afitt.py' adding 'mmtbx/geometry_restraints/base_qm_manager.py' adding 'mmtbx/geometry_restraints/c_beta.py' adding 'mmtbx/geometry_restraints/external.py' adding 'mmtbx/geometry_restraints/geo_file_parsing.py' adding 'mmtbx/geometry_restraints/mopac_manager.py' adding 'mmtbx/geometry_restraints/orca_manager.py' adding 'mmtbx/geometry_restraints/qi_utils.py' adding 'mmtbx/geometry_restraints/qm_manager.py' adding 'mmtbx/geometry_restraints/quantum_interface.py' adding 'mmtbx/geometry_restraints/quantum_restraints_manager.py' adding 'mmtbx/geometry_restraints/ramachandran.py' adding 'mmtbx/geometry_restraints/reference.py' adding 'mmtbx/geometry_restraints/tst_c_beta_restraints.py' adding 'mmtbx/geometry_restraints/tst_geo_file_parsing.py' adding 'mmtbx/geometry_restraints/tst_manager.py' adding 'mmtbx/geometry_restraints/tst_ramachandran.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate2.py' adding 'mmtbx/geometry_restraints/torsion_restraints/__init__.py' adding 'mmtbx/geometry_restraints/torsion_restraints/reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py' adding 'mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/utils.py' adding 'mmtbx/hydrogens/__init__.py' adding 'mmtbx/hydrogens/build_hydrogens.py' adding 'mmtbx/hydrogens/connectivity.py' adding 'mmtbx/hydrogens/find.py' adding 'mmtbx/hydrogens/neutron_utils.py' adding 'mmtbx/hydrogens/parameterization.py' adding 'mmtbx/hydrogens/reduce_hydrogen.py' adding 'mmtbx/hydrogens/riding.py' adding 'mmtbx/hydrogens/specialised_hydrogen_atoms.py' adding 'mmtbx/hydrogens/tst.py' adding 'mmtbx/hydrogens/tst_add_hydrogen.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_0.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_1.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_2.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_3.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_4.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_5.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_6.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_7.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_8.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_9.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_time.py' adding 'mmtbx/hydrogens/tst_connectivity.py' adding 'mmtbx/hydrogens/tst_parameterization_1.py' adding 'mmtbx/hydrogens/tst_parameterization_2.py' adding 'mmtbx/hydrogens/tst_parameterization_3.py' adding 'mmtbx/hydrogens/tst_parameterization_4.py' adding 'mmtbx/hydrogens/tst_parameterization_5.py' adding 'mmtbx/hydrogens/tst_parameterization_6.py' adding 'mmtbx/hydrogens/tst_parameterization_7.py' adding 'mmtbx/hydrogens/tst_parameterization_8.py' adding 'mmtbx/hydrogens/tst_parameterization_9.py' adding 'mmtbx/hydrogens/tst_riding_coefficients.py' adding 'mmtbx/hydrogens/tst_riding_fd_1.py' adding 'mmtbx/hydrogens/tst_riding_fd_2.py' adding 'mmtbx/hydrogens/tst_riding_fd_3.py' adding 'mmtbx/hydrogens/tst_riding_fd_4.py' adding 'mmtbx/hydrogens/tst_riding_fd_5.py' adding 'mmtbx/hydrogens/tst_riding_manager.py' adding 'mmtbx/hydrogens/tst_riding_minimize.py' adding 'mmtbx/hydrogens/tst_validate_H.py' adding 'mmtbx/hydrogens/validate_H.py' adding 'mmtbx/ias/__init__.py' adding 'mmtbx/ias/tst_ias.py' adding 'mmtbx/idealized_aa_residues/__init__.py' adding 'mmtbx/idealized_aa_residues/all_his.py' adding 'mmtbx/idealized_aa_residues/rotamer_manager.py' adding 'mmtbx/idealized_aa_residues/sample_rotamers.py' adding 'mmtbx/idealized_aa_residues/tst.py' adding 'mmtbx/ions/__init__.py' adding 'mmtbx/ions/build.py' adding 'mmtbx/ions/environment.py' adding 'mmtbx/ions/geometry.py' adding 'mmtbx/ions/halides.py' adding 'mmtbx/ions/identify.py' adding 'mmtbx/ions/tst_environment.py' adding 'mmtbx/ions/tst_geometries.py' adding 'mmtbx/ions/tst_parameters.py' adding 'mmtbx/ions/tst_pick_approx_zn.py' adding 'mmtbx/ions/tst_pick_ca.py' adding 'mmtbx/ions/tst_pick_ca_svm.py' adding 'mmtbx/ions/tst_pick_k.py' adding 'mmtbx/ions/tst_pick_mg.py' adding 'mmtbx/ions/tst_pickle.py' adding 'mmtbx/ions/tst_symmetry_axis.py' adding 'mmtbx/ions/tst_utils.py' adding 'mmtbx/ions/tst_validate_ca.py' adding 'mmtbx/ions/tst_validate_mg.py' adding 'mmtbx/ions/utils.py' adding 'mmtbx/ions/svm/__init__.py' adding 'mmtbx/ions/svm/dump_sites.py' adding 'mmtbx/ions/svm/tst_classifier_01.py' adding 'mmtbx/ions/svm/tst_classifier_02.py' adding 'mmtbx/ions/svm/utils.py' adding 'mmtbx/kinemage/__init__.py' adding 'mmtbx/kinemage/nrubs.py' adding 'mmtbx/kinemage/ribbons.py' adding 'mmtbx/kinemage/validation.py' adding 'mmtbx/ligands/__init__.py' adding 'mmtbx/ligands/chemistry.py' adding 'mmtbx/ligands/elbow_utils.py' adding 'mmtbx/ligands/electrons.py' adding 'mmtbx/ligands/hierarchy_utils.py' adding 'mmtbx/ligands/rdkit_utils.py' adding 'mmtbx/ligands/ready_set_basics.py' adding 'mmtbx/ligands/ready_set_utils.py' adding 'mmtbx/ligands/tst_electron_scripting.py' adding 'mmtbx/ligands/tst_ready_set_utils.py' adding 'mmtbx/ligands/tst_xtal_screens.py' adding 'mmtbx/ligands/xtal_screens.py' adding 'mmtbx/maps/__init__.py' adding 'mmtbx/maps/composite_omit_map.py' adding 'mmtbx/maps/correlation.py' adding 'mmtbx/maps/fem.py' adding 'mmtbx/maps/fobs_minus_fobs_map.py' adding 'mmtbx/maps/kick.py' adding 'mmtbx/maps/map_model_cc.py' adding 'mmtbx/maps/mtriage.py' adding 'mmtbx/maps/polder.py' adding 'mmtbx/maps/superpose.py' adding 'mmtbx/maps/tst_composite_omit_map.py' adding 'mmtbx/maps/tst_composite_omit_map_2.py' adding 'mmtbx/maps/tst_composite_omit_map_3.py' adding 'mmtbx/maps/tst_correlation.py' adding 'mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py' adding 'mmtbx/maps/utils.py' adding 'mmtbx/maps/xtrapol8.py' adding 'mmtbx/masks/__init__.py' adding 'mmtbx/masks/tst_asu_mask.py' adding 'mmtbx/masks/tst_masks.py' adding 'mmtbx/max_lik/__init__.py' adding 'mmtbx/max_lik/max_like_non_uniform.py' adding 'mmtbx/max_lik/maxlik.py' adding 'mmtbx/max_lik/tst_max_lik.py' adding 'mmtbx/max_lik/tst_maxlik.py' adding 'mmtbx/model/__init__.py' adding 'mmtbx/model/model.py' adding 'mmtbx/model/restraints.py' adding 'mmtbx/model/statistics.py' adding 'mmtbx/model/utils.py' adding 'mmtbx/monomer_library/__init__.py' adding 'mmtbx/monomer_library/bondlength_defaults.py' adding 'mmtbx/monomer_library/cif_triage.py' adding 'mmtbx/monomer_library/cif_types.py' adding 'mmtbx/monomer_library/conformation_dependent_restraints.py' adding 'mmtbx/monomer_library/conv_v2_v3.py' adding 'mmtbx/monomer_library/correct_hydrogen_geometries.py' adding 'mmtbx/monomer_library/geostd_utils.py' adding 'mmtbx/monomer_library/glyco_chiral_values.py' adding 'mmtbx/monomer_library/glyco_utils.py' adding 'mmtbx/monomer_library/hydrogen_restrictions.py' adding 'mmtbx/monomer_library/idealized_aa.py' adding 'mmtbx/monomer_library/linking_mixins.py' adding 'mmtbx/monomer_library/linking_setup.py' adding 'mmtbx/monomer_library/linking_utils.py' adding 'mmtbx/monomer_library/mmtbx_utils.py' adding 'mmtbx/monomer_library/pdb_interpretation.py' adding 'mmtbx/monomer_library/populate_auto_linking_origin_ids.py' adding 'mmtbx/monomer_library/rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/rotamer_utils.py' adding 'mmtbx/monomer_library/server.py' adding 'mmtbx/monomer_library/tst_all_cif_files.py' adding 'mmtbx/monomer_library/tst_carbo_linking.py' adding 'mmtbx/monomer_library/tst_chg.py' adding 'mmtbx/monomer_library/tst_cif_triage.py' adding 'mmtbx/monomer_library/tst_cif_types.py' adding 'mmtbx/monomer_library/tst_correct_hydrogens.py' adding 'mmtbx/monomer_library/tst_deuterium_terminii.py' adding 'mmtbx/monomer_library/tst_geo_reduce_for_tardy.py' adding 'mmtbx/monomer_library/tst_glyco_coordination.py' adding 'mmtbx/monomer_library/tst_glyco_hand.py' adding 'mmtbx/monomer_library/tst_idealized_aa.py' adding 'mmtbx/monomer_library/tst_iron_sulfur_clusters.py' adding 'mmtbx/monomer_library/tst_linking.py' adding 'mmtbx/monomer_library/tst_metal_coordination.py' adding 'mmtbx/monomer_library/tst_motif.py' adding 'mmtbx/monomer_library/tst_neutron_distance.py' adding 'mmtbx/monomer_library/tst_paral_geo.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_2.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_3.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_4.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_5.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py' adding 'mmtbx/monomer_library/tst_protein_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_dna_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/tst_rotamer_utils.py' adding 'mmtbx/monomer_library/tst_selection.py' adding 'mmtbx/monomer_library/tst_server.py' adding 'mmtbx/monomer_library/tst_superpose_ideal.py' adding 'mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py' adding 'mmtbx/monomer_library/tst_user_supplied_library.py' adding 'mmtbx/nci/__init__.py' adding 'mmtbx/nci/data_filtering.py' adding 'mmtbx/nci/hbond.py' adding 'mmtbx/nci/skew_kurt_plot.py' adding 'mmtbx/nci/tst_hbond.py' adding 'mmtbx/ncs/__init__.py' adding 'mmtbx/ncs/cartesian_restraints.py' adding 'mmtbx/ncs/ligands.py' adding 'mmtbx/ncs/ncs.py' adding 'mmtbx/ncs/ncs_params.py' adding 'mmtbx/ncs/ncs_restraints_group_list.py' adding 'mmtbx/ncs/ncs_search.py' adding 'mmtbx/ncs/ncs_utils.py' adding 'mmtbx/ncs/tncs.py' adding 'mmtbx/pair_interaction/__init__.py' adding 'mmtbx/pair_interaction/pair_interaction.py' adding 'mmtbx/pair_interaction/tst_00.py' adding 'mmtbx/pair_interaction/tst_01.py' adding 'mmtbx/pair_interaction/tst_02.py' adding 'mmtbx/pair_interaction/tst_03.py' adding 'mmtbx/pair_interaction/tst_04.py' adding 'mmtbx/pair_interaction/tst_05.py' adding 'mmtbx/polygon/__init__.py' adding 'mmtbx/polygon/output.py' adding 'mmtbx/polygon/tst.py' adding 'mmtbx/polygon/tst_gui.py' adding 'mmtbx/polygon/tst_polygon_data.py' adding 'mmtbx/probe/AtomTypes.py' adding 'mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py' adding 'mmtbx/probe/Helpers.py' adding 'mmtbx/probe/__init__.py' adding 'mmtbx/probe/tst_mmtbx_probe_ext.py' adding 'mmtbx/programs/__init__.py' adding 'mmtbx/programs/arginine_geometry.py' adding 'mmtbx/programs/atom_selection.py' adding 'mmtbx/programs/atom_valence_simple.py' adding 'mmtbx/programs/barbed_wire_analysis.py' adding 'mmtbx/programs/cablam.py' adding 'mmtbx/programs/cablam_idealization.py' adding 'mmtbx/programs/cbetadev.py' adding 'mmtbx/programs/chiral_validation.py' adding 'mmtbx/programs/clashscore.py' adding 'mmtbx/programs/clashscore2.py' adding 'mmtbx/programs/comparama.py' adding 'mmtbx/programs/debug_riding.py' adding 'mmtbx/programs/elbow_services.py' adding 'mmtbx/programs/emringer.py' adding 'mmtbx/programs/fetch.py' adding 'mmtbx/programs/fmodel.py' adding 'mmtbx/programs/hbond.py' adding 'mmtbx/programs/holton_geometry_validation.py' adding 'mmtbx/programs/hydrogenate.py' adding 'mmtbx/programs/ligand_restraints_validation.py' adding 'mmtbx/programs/mask.py' adding 'mmtbx/programs/matthews.py' adding 'mmtbx/programs/model_vs_sequence.py' adding 'mmtbx/programs/mp_validate_bonds.py' adding 'mmtbx/programs/next_gen_atom_typing.py' adding 'mmtbx/programs/nonbonded_overlaps.py' adding 'mmtbx/programs/omegalyze.py' adding 'mmtbx/programs/pdb_as_cif.py' adding 'mmtbx/programs/pdbtools.py' adding 'mmtbx/programs/polder.py' adding 'mmtbx/programs/prepare_pdb_deposition.py' adding 'mmtbx/programs/probe2.py' adding 'mmtbx/programs/probescore_ligand.py' adding 'mmtbx/programs/process_predicted_model.py' adding 'mmtbx/programs/quantum_interface.py' adding 'mmtbx/programs/rama_z.py' adding 'mmtbx/programs/ramalyze.py' adding 'mmtbx/programs/real_space_correlation.py' adding 'mmtbx/programs/reduce2.py' adding 'mmtbx/programs/reduce_cryoem_resolution.py' adding 'mmtbx/programs/ribbons.py' adding 'mmtbx/programs/rna_validate.py' adding 'mmtbx/programs/rna_validate_bonds.py' adding 'mmtbx/programs/rna_validate_puckers.py' adding 'mmtbx/programs/rna_validate_suites.py' adding 'mmtbx/programs/rotalyze.py' adding 'mmtbx/programs/ss_idealization.py' adding 'mmtbx/programs/ss_validation.py' adding 'mmtbx/programs/suitename.py' adding 'mmtbx/programs/suitename_old.py' adding 'mmtbx/programs/taam_minus_iam.py' adding 'mmtbx/programs/undowser.py' adding 'mmtbx/programs/undowser2.py' adding 'mmtbx/programs/validate_ligands.py' adding 'mmtbx/programs/water_b_factors.py' adding 'mmtbx/programs/xtrapol8.py' adding 'mmtbx/real_space/__init__.py' adding 'mmtbx/real_space/tst.py' adding 'mmtbx/reduce/InteractionGraph.py' adding 'mmtbx/reduce/Movers.py' adding 'mmtbx/reduce/Optimizers.py' adding 'mmtbx/reduce/__init__.py' adding 'mmtbx/reduce/tst_mmtbx_reduce_ext.py' adding 'mmtbx/refinement/__init__.py' adding 'mmtbx/refinement/adp_refinement.py' adding 'mmtbx/refinement/anomalous_scatterer_groups.py' adding 'mmtbx/refinement/calculators.py' adding 'mmtbx/refinement/data.py' adding 'mmtbx/refinement/energy_monitor.py' adding 'mmtbx/refinement/flip_peptide_side_chain.py' adding 'mmtbx/refinement/geometry_minimization.py' adding 'mmtbx/refinement/group.py' adding 'mmtbx/refinement/inspect_tardy_trajectory.py' adding 'mmtbx/refinement/minimization.py' adding 'mmtbx/refinement/minimization_monitor.py' adding 'mmtbx/refinement/minimization_ncs_constraints.py' adding 'mmtbx/refinement/occupancies.py' adding 'mmtbx/refinement/orca.py' adding 'mmtbx/refinement/print_statistics.py' adding 'mmtbx/refinement/refinement_flags.py' adding 'mmtbx/refinement/restraints.py' adding 'mmtbx/refinement/rigid_body.py' adding 'mmtbx/refinement/select_best_starting_model.py' adding 'mmtbx/refinement/tardy.py' adding 'mmtbx/refinement/targets.py' adding 'mmtbx/refinement/tst_anomalous_scatterer_groups.py' adding 'mmtbx/refinement/tst_fit_rotamers.py' adding 'mmtbx/refinement/tst_group.py' adding 'mmtbx/refinement/tst_group_2.py' adding 'mmtbx/refinement/tst_misc.py' adding 'mmtbx/refinement/tst_occupancy_selections.py' adding 'mmtbx/refinement/tst_real_space_simple.py' adding 'mmtbx/refinement/tst_refinement_flags.py' adding 'mmtbx/refinement/tst_rigid_body.py' adding 'mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py' adding 'mmtbx/refinement/tst_select_best_starting_model.py' adding 'mmtbx/refinement/utils.py' adding 'mmtbx/refinement/weights.py' adding 'mmtbx/refinement/weights_params.py' adding 'mmtbx/refinement/wrappers.py' adding 'mmtbx/refinement/wx_tardy_pdb.py' adding 'mmtbx/refinement/ensemble_refinement/__init__.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_probability.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_utils.py' adding 'mmtbx/refinement/real_space/__init__.py' adding 'mmtbx/refinement/real_space/adp.py' adding 'mmtbx/refinement/real_space/explode_and_refine.py' adding 'mmtbx/refinement/real_space/fit_his.py' adding 'mmtbx/refinement/real_space/fit_residue.py' adding 'mmtbx/refinement/real_space/fit_residues.py' adding 'mmtbx/refinement/real_space/fit_small_molecule.py' adding 'mmtbx/refinement/real_space/fit_water.py' adding 'mmtbx/refinement/real_space/individual_sites.py' adding 'mmtbx/refinement/real_space/occupancy.py' adding 'mmtbx/refinement/real_space/rigid_body.py' adding 'mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_7.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_selection.py' adding 'mmtbx/refinement/real_space/tst_fit_water.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_1.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_2.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_3.py' adding 'mmtbx/refinement/real_space/tst_monitor.py' adding 'mmtbx/refinement/real_space/tst_rigid_body.py' adding 'mmtbx/refinement/real_space/tst_weight.py' adding 'mmtbx/refinement/real_space/utils.py' adding 'mmtbx/refinement/real_space/weight.py' adding 'mmtbx/regression/__init__.py' adding 'mmtbx/regression/make_fake_anomalous_data.py' adding 'mmtbx/regression/tst_add_arrows_on_plot.py' adding 'mmtbx/regression/tst_add_h_to_water.py' adding 'mmtbx/regression/tst_adp_restraints.py' adding 'mmtbx/regression/tst_alignment.py' adding 'mmtbx/regression/tst_altloc_chain_break.py' adding 'mmtbx/regression/tst_altloc_remediate.py' adding 'mmtbx/regression/tst_angle.py' adding 'mmtbx/regression/tst_anomalous_substructure.py' adding 'mmtbx/regression/tst_apply_cif_restraints.py' adding 'mmtbx/regression/tst_arginine_geometry.py' adding 'mmtbx/regression/tst_cc_star.py' adding 'mmtbx/regression/tst_chain_comparison.py' adding 'mmtbx/regression/tst_chain_comparison_cif.py' adding 'mmtbx/regression/tst_cif_as_mtz_wavelengths.py' adding 'mmtbx/regression/tst_cis_trans_peptide_link.py' adding 'mmtbx/regression/tst_clashes.py' adding 'mmtbx/regression/tst_command_line_input.py' adding 'mmtbx/regression/tst_domains_from_pae.py' adding 'mmtbx/regression/tst_domains_from_pae_cif.py' adding 'mmtbx/regression/tst_dynamics_cli.py' adding 'mmtbx/regression/tst_examples.py' adding 'mmtbx/regression/tst_find_ncs.py' adding 'mmtbx/regression/tst_find_ss_structure.py' adding 'mmtbx/regression/tst_find_ss_structure_cif.py' adding 'mmtbx/regression/tst_flipping_his.py' adding 'mmtbx/regression/tst_fmodel.py' adding 'mmtbx/regression/tst_fmodel_2.py' adding 'mmtbx/regression/tst_fmodel_and_dm.py' adding 'mmtbx/regression/tst_fmodel_fd.py' adding 'mmtbx/regression/tst_fmodel_misc.py' adding 'mmtbx/regression/tst_fmodel_no_cryst1.py' adding 'mmtbx/regression/tst_geo_min_restraints_phil.py' adding 'mmtbx/regression/tst_geometry_minimization.py' adding 'mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/regression/tst_holton_geometry_validation.py' adding 'mmtbx/regression/tst_isomorphous_difference_misc.py' adding 'mmtbx/regression/tst_ligand_ncs.py' adding 'mmtbx/regression/tst_loop_closure.py' adding 'mmtbx/regression/tst_lrv.py' adding 'mmtbx/regression/tst_map_model_cc.py' adding 'mmtbx/regression/tst_map_type_parser.py' adding 'mmtbx/regression/tst_maps_misc.py' adding 'mmtbx/regression/tst_metal_link_1.py' adding 'mmtbx/regression/tst_minimize_chain.py' adding 'mmtbx/regression/tst_ml_estimate.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py' adding 'mmtbx/regression/tst_model_map.py' adding 'mmtbx/regression/tst_model_vs_map.py' adding 'mmtbx/regression/tst_model_vs_sequence.py' adding 'mmtbx/regression/tst_models_to_from_chains.py' adding 'mmtbx/regression/tst_msa.py' adding 'mmtbx/regression/tst_mtz2map.py' adding 'mmtbx/regression/tst_multi_residue_class.py' adding 'mmtbx/regression/tst_origin_ids.py' adding 'mmtbx/regression/tst_pdbtools.py' adding 'mmtbx/regression/tst_polder.py' adding 'mmtbx/regression/tst_polder_1.py' adding 'mmtbx/regression/tst_polder_2.py' adding 'mmtbx/regression/tst_polder_3.py' adding 'mmtbx/regression/tst_polder_4.py' adding 'mmtbx/regression/tst_polder_box.py' adding 'mmtbx/regression/tst_polder_ccs.py' adding 'mmtbx/regression/tst_probe.py' adding 'mmtbx/regression/tst_process_predicted_model.py' adding 'mmtbx/regression/tst_process_predicted_model_cif.py' adding 'mmtbx/regression/tst_prune_model.py' adding 'mmtbx/regression/tst_psi_phi_extraction.py' adding 'mmtbx/regression/tst_rank_scale_map.py' adding 'mmtbx/regression/tst_rdkit_utils_fragmentation.py' adding 'mmtbx/regression/tst_real_space_correlation.py' adding 'mmtbx/regression/tst_reduce.py' adding 'mmtbx/regression/tst_reduce_cryoem_resolution.py' adding 'mmtbx/regression/tst_reduce_timeout.py' adding 'mmtbx/regression/tst_refine_anomalous_substructure.py' adding 'mmtbx/regression/tst_regularize_from_pdb.py' adding 'mmtbx/regression/tst_regularize_from_pdb_cif.py' adding 'mmtbx/regression/tst_ribbons.py' adding 'mmtbx/regression/tst_rigid_bond_test.py' adding 'mmtbx/regression/tst_ringer.py' adding 'mmtbx/regression/tst_sampled_model_density.py' adding 'mmtbx/regression/tst_scattering_table.py' adding 'mmtbx/regression/tst_scattering_type_registry.py' adding 'mmtbx/regression/tst_schrodinger_interface.py' adding 'mmtbx/regression/tst_sequence_validation.py' adding 'mmtbx/regression/tst_sort_hetatms.py' adding 'mmtbx/regression/tst_special_term_at_end.py' adding 'mmtbx/regression/tst_statistics_output.py' adding 'mmtbx/regression/tst_superpose.py' adding 'mmtbx/regression/tst_table_one.py' adding 'mmtbx/regression/tst_utils.py' adding 'mmtbx/regression/tst_validate_ligands.py' adding 'mmtbx/regression/tst_validate_ligands_2.py' adding 'mmtbx/regression/tst_validation_summary.py' adding 'mmtbx/regression/model/__init__.py' adding 'mmtbx/regression/model/tst_model.py' adding 'mmtbx/regression/model/tst_model_2.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix_2.py' adding 'mmtbx/regression/model/tst_model_cart_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_dedeuterate.py' adding 'mmtbx/regression/model/tst_model_get_vdw_radii.py' adding 'mmtbx/regression/model/tst_model_merge.py' adding 'mmtbx/regression/model/tst_model_mtrix.py' adding 'mmtbx/regression/model/tst_model_ncs.py' adding 'mmtbx/regression/model/tst_model_neutralize_scatterers.py' adding 'mmtbx/regression/model/tst_model_pairs_within.py' adding 'mmtbx/regression/model/tst_model_ramachandran.py' adding 'mmtbx/regression/model/tst_model_remove_alternative_conformations.py' adding 'mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py' adding 'mmtbx/regression/model/tst_model_symmetry.py' adding 'mmtbx/regression/model/tst_model_tors_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_utils_merge_models.py' adding 'mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py' adding 'mmtbx/regression/ncs/__init__.py' adding 'mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py' adding 'mmtbx/regression/ncs/tst_ncs_restraints_group_list.py' adding 'mmtbx/regression/ncs/tst_ncs_search.py' adding 'mmtbx/regression/ncs/tst_ncs_search_flips.py' adding 'mmtbx/regression/ncs/tst_ncs_utils.py' adding 'mmtbx/regression/ncs/tst_restraints.py' adding 'mmtbx/regression/tls/__init__.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py' adding 'mmtbx/regression/tls/tst_get_t_scheme.py' adding 'mmtbx/regression/tls/tst_tls.py' adding 'mmtbx/regression/tls/tst_tls_analysis.py' adding 'mmtbx/regression/tls/tst_tls_as_xyz.py' adding 'mmtbx/regression/tls/tst_tls_optimise_amplitudes.py' adding 'mmtbx/regression/tls/tst_tls_refinement_fft.py' adding 'mmtbx/regression/tls/tst_tls_utils.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py' adding 'mmtbx/ringer/__init__.py' adding 'mmtbx/ringer/em_rolling.py' adding 'mmtbx/ringer/em_rscc.py' adding 'mmtbx/ringer/em_scoring.py' adding 'mmtbx/ringer/emringer.py' adding 'mmtbx/ringer/tst_em_rscc.py' adding 'mmtbx/ringer/tst_emringer.py' adding 'mmtbx/rotamer/__init__.py' adding 'mmtbx/rotamer/graphics.py' adding 'mmtbx/rotamer/n_dim_table.py' adding 'mmtbx/rotamer/nqh.py' adding 'mmtbx/rotamer/ramachandran_eval.py' adding 'mmtbx/rotamer/ramachandran_eval_deprecated.py' adding 'mmtbx/rotamer/rotamer_eval.py' adding 'mmtbx/rotamer/sidechain_angles.py' adding 'mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py' adding 'mmtbx/rotamer/tst_rotamer_eval.py' adding 'mmtbx/rsr/__init__.py' adding 'mmtbx/rsr/tst.py' adding 'mmtbx/scaling/__init__.py' adding 'mmtbx/scaling/absence_likelihood.py' adding 'mmtbx/scaling/absences.py' adding 'mmtbx/scaling/absolute_scaling.py' adding 'mmtbx/scaling/basic_analyses.py' adding 'mmtbx/scaling/bayesian_estimator.py' adding 'mmtbx/scaling/data_statistics.py' adding 'mmtbx/scaling/fa_estimation.py' adding 'mmtbx/scaling/make_param.py' adding 'mmtbx/scaling/massage_twin_detwin_data.py' adding 'mmtbx/scaling/matthews.py' adding 'mmtbx/scaling/mean_f_rms_f.py' adding 'mmtbx/scaling/outlier_plots.py' adding 'mmtbx/scaling/outlier_rejection.py' adding 'mmtbx/scaling/pair_analyses.py' adding 'mmtbx/scaling/plan_sad_experiment.py' adding 'mmtbx/scaling/pre_scale.py' adding 'mmtbx/scaling/random_omit.py' adding 'mmtbx/scaling/relative_scaling.py' adding 'mmtbx/scaling/relative_wilson.py' adding 'mmtbx/scaling/remove_outliers.py' adding 'mmtbx/scaling/sigmaa_estimation.py' adding 'mmtbx/scaling/ta_alpha_beta_calc.py' adding 'mmtbx/scaling/thorough_outlier_test.py' adding 'mmtbx/scaling/tst_absences.py' adding 'mmtbx/scaling/tst_bayesian_estimator.py' adding 'mmtbx/scaling/tst_massage_data.py' adding 'mmtbx/scaling/tst_mean_f_rms_f.py' adding 'mmtbx/scaling/tst_outlier.py' adding 'mmtbx/scaling/tst_plan_sad_experiment.py' adding 'mmtbx/scaling/tst_scaling.py' adding 'mmtbx/scaling/tst_sigmaa.py' adding 'mmtbx/scaling/tst_xtriage.py' adding 'mmtbx/scaling/tst_xtriage_twin_analyses.py' adding 'mmtbx/scaling/twin_analyses.py' adding 'mmtbx/scaling/twmad_scale.py' adding 'mmtbx/scaling/xtriage.py' adding 'mmtbx/secondary_structure/__init__.py' adding 'mmtbx/secondary_structure/find_ss_from_ca.py' adding 'mmtbx/secondary_structure/nucleic_acids.py' adding 'mmtbx/secondary_structure/proteins.py' adding 'mmtbx/secondary_structure/regularize_from_pdb.py' adding 'mmtbx/secondary_structure/secondary_structure_params.py' adding 'mmtbx/secondary_structure/ss_validation.py' adding 'mmtbx/secondary_structure/tst.py' adding 'mmtbx/secondary_structure/tst_insertion_codes.py' adding 'mmtbx/secondary_structure/tst_segid.py' adding 'mmtbx/secondary_structure/utils.py' adding 'mmtbx/secondary_structure/build/__init__.py' adding 'mmtbx/secondary_structure/build/ss_idealization.py' adding 'mmtbx/secondary_structure/build/tst_1.py' adding 'mmtbx/secondary_structure/build/tst_2.py' adding 'mmtbx/secondary_structure/build/tst_3.py' adding 'mmtbx/secondary_structure/build/tst_io.py' adding 'mmtbx/secondary_structure/build/tst_ss_id_ncs.py' adding 'mmtbx/sisa/__init__.py' adding 'mmtbx/sisa/optimize/__init__.py' adding 'mmtbx/sisa/optimize/mod_ga.py' adding 'mmtbx/sisa/optimize/mod_input.py' adding 'mmtbx/sisa/optimize/mod_masks.py' adding 'mmtbx/sisa/optimize/mod_mtz.py' adding 'mmtbx/sisa/optimize/mod_optimize.py' adding 'mmtbx/sisa/optimize/mod_util.py' adding 'mmtbx/solvent/__init__.py' adding 'mmtbx/solvent/ensemble_ordered_solvent.py' adding 'mmtbx/solvent/map_to_water.py' adding 'mmtbx/solvent/ordered_solvent.py' adding 'mmtbx/suitename/__init__.py' adding 'mmtbx/suitename/diangle.py' adding 'mmtbx/suitename/dualparse.py' adding 'mmtbx/suitename/mainchain.py' adding 'mmtbx/suitename/suitealyze.py' adding 'mmtbx/suitename/suitename.py' adding 'mmtbx/suitename/suitenamedefs.py' adding 'mmtbx/suitename/suiteninit.py' adding 'mmtbx/suitename/suiteninput.py' adding 'mmtbx/suitename/suitenout.py' adding 'mmtbx/suitename/suites.py' adding 'mmtbx/suitename/transdent.py' adding 'mmtbx/tls/__init__.py' adding 'mmtbx/tls/analysis.py' adding 'mmtbx/tls/command_line.py' adding 'mmtbx/tls/decompose.py' adding 'mmtbx/tls/ladp.py' adding 'mmtbx/tls/optimise_amplitudes.py' adding 'mmtbx/tls/perm10.py' adding 'mmtbx/tls/perm11.py' adding 'mmtbx/tls/perm12.py' adding 'mmtbx/tls/perm13.py' adding 'mmtbx/tls/perm14.py' adding 'mmtbx/tls/perm15.py' adding 'mmtbx/tls/tls_as_xyz.py' adding 'mmtbx/tls/tools.py' adding 'mmtbx/tls/utils.py' adding 'mmtbx/twinning/__init__.py' adding 'mmtbx/twinning/probabalistic_detwinning.py' adding 'mmtbx/twinning/twin_f_model.py' adding 'mmtbx/utils/__init__.py' adding 'mmtbx/utils/fab_elbow_angle.py' adding 'mmtbx/utils/grid2d.py' adding 'mmtbx/utils/ntc.py' adding 'mmtbx/utils/rotatable_bonds.py' adding 'mmtbx/utils/tst_switch_rotamers.py' adding 'mmtbx/validation/__init__.py' adding 'mmtbx/validation/analyze_peptides.py' adding 'mmtbx/validation/barbed_wire_analysis.py' adding 'mmtbx/validation/cablam.py' adding 'mmtbx/validation/cbd_utils.py' adding 'mmtbx/validation/cbetadev.py' adding 'mmtbx/validation/chain_comparison.py' adding 'mmtbx/validation/clashscore.py' adding 'mmtbx/validation/clashscore2.py' adding 'mmtbx/validation/comparama.py' adding 'mmtbx/validation/comprehensive_residue.py' adding 'mmtbx/validation/convert_lists.py' adding 'mmtbx/validation/datasets.py' adding 'mmtbx/validation/ensembles.py' adding 'mmtbx/validation/experimental.py' adding 'mmtbx/validation/fav_lists.py' adding 'mmtbx/validation/graphics.py' adding 'mmtbx/validation/holton_geometry_validation.py' adding 'mmtbx/validation/ligands.py' adding 'mmtbx/validation/mean_devs_PRO_phi_psi.py' adding 'mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py' adding 'mmtbx/validation/mean_devs_others_phi_psi.py' adding 'mmtbx/validation/model_properties.py' adding 'mmtbx/validation/mp_validate_bonds.py' adding 'mmtbx/validation/omegalyze.py' adding 'mmtbx/validation/phi_psi_2_data.py' adding 'mmtbx/validation/rama_z.py' adding 'mmtbx/validation/ramalyze.py' adding 'mmtbx/validation/restraints.py' adding 'mmtbx/validation/rna_validate.py' adding 'mmtbx/validation/rotalyze.py' adding 'mmtbx/validation/sequence.py' adding 'mmtbx/validation/undowser.py' adding 'mmtbx/validation/undowser2.py' adding 'mmtbx/validation/utils.py' adding 'mmtbx/validation/validate_ligands.py' adding 'mmtbx/validation/waters.py' adding 'mmtbx/validation/molprobity/__init__.py' adding 'mmtbx/validation/molprobity/kinemage_templates.py' adding 'mmtbx/validation/molprobity/mp_geo.py' adding 'mmtbx/validation/molprobity/percentile_clashscore.py' adding 'mmtbx/validation/molprobity/percentile_mpscore.py' adding 'mmtbx/validation/molprobity/probescore_ligand.py' adding 'mmtbx/validation/molprobity/table_from_json.py' adding 'mmtbx/validation/ramachandran/__init__.py' adding 'mmtbx/validation/ramachandran/convert_from_text.py' adding 'mmtbx/validation/regression/__init__.py' adding 'mmtbx/validation/regression/run_restraints.py' adding 'mmtbx/validation/regression/tst_cablam.py' adding 'mmtbx/validation/regression/tst_cablam_2.py' adding 'mmtbx/validation/regression/tst_cbetadev.py' adding 'mmtbx/validation/regression/tst_cbetadev_02.py' adding 'mmtbx/validation/regression/tst_chiral_validation.py' adding 'mmtbx/validation/regression/tst_clashscore.py' adding 'mmtbx/validation/regression/tst_clashscore_2.py' adding 'mmtbx/validation/regression/tst_do_flips_clashscore.py' adding 'mmtbx/validation/regression/tst_experimental.py' adding 'mmtbx/validation/regression/tst_find_region_max_value.py' adding 'mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py' adding 'mmtbx/validation/regression/tst_keep_hydrogens.py' adding 'mmtbx/validation/regression/tst_model_properties.py' adding 'mmtbx/validation/regression/tst_molprobity_1.py' adding 'mmtbx/validation/regression/tst_molprobity_2.py' adding 'mmtbx/validation/regression/tst_molprobity_3.py' adding 'mmtbx/validation/regression/tst_molprobity_4.py' adding 'mmtbx/validation/regression/tst_molprobity_5.py' adding 'mmtbx/validation/regression/tst_molprobity_arguments.py' adding 'mmtbx/validation/regression/tst_mp_geo.py' adding 'mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py' adding 'mmtbx/validation/regression/tst_mp_geo_endtoend.py' adding 'mmtbx/validation/regression/tst_mp_validate_bonds.py' adding 'mmtbx/validation/regression/tst_omegalyze.py' adding 'mmtbx/validation/regression/tst_rama_z_01.py' adding 'mmtbx/validation/regression/tst_rama_z_02.py' adding 'mmtbx/validation/regression/tst_ramalyze.py' adding 'mmtbx/validation/regression/tst_ramalyze2.py' adding 'mmtbx/validation/regression/tst_ramalyze_rare.py' adding 'mmtbx/validation/regression/tst_restraints.py' adding 'mmtbx/validation/regression/tst_rna_validate.py' adding 'mmtbx/validation/regression/tst_rotalyze.py' adding 'mmtbx/validation/regression/tst_suitename.py' adding 'mmtbx/validation/regression/tst_symmetry_SS.py' adding 'mmtbx/validation/regression/tst_undowser.py' adding 'mmtbx/validation/regression/tst_undowser2.py' adding 'mmtbx/validation/regression/tst_waters.py' adding 'mmtbx/wwpdb/__init__.py' adding 'mmtbx/wwpdb/rcsb_entry_request.py' adding 'mmtbx/wwpdb/rcsb_web_services.py' adding 'mmtbx/wwpdb/tst_rcsb_entry_request.py' adding 'mmtbx/wwpdb/tst_rcsb_web_services.py' adding 'omptbx/__init__.py' adding 'omptbx/tst.py' adding 'qttbx/__init__.py' adding 'qttbx/phil.py' adding 'qttbx/viewers/__init__.py' adding 'qttbx/viewers/chimerax.py' adding 'rstbx/__init__.py' adding 'rstbx/run_tests.py' adding 'rstbx/utils.py' adding 'rstbx/apps/__init__.py' adding 'rstbx/apps/dual_resolution_helpers.py' adding 'rstbx/apps/slip_helpers.py' adding 'rstbx/apps/spot_markup.py' adding 'rstbx/apps/stills/__init__.py' adding 'rstbx/apps/stills/deltapsi_refinement_preceding_integration.py' adding 'rstbx/apps/stills/dials_refinement_preceding_integration.py' adding 'rstbx/apps/stills/simple_integration.py' adding 'rstbx/apps/stills/stills_integration.py' adding 'rstbx/apps/stills/util.py' adding 'rstbx/array_family/__init__.py' adding 'rstbx/array_family/flex.py' adding 'rstbx/bandpass/__init__.py' adding 'rstbx/bandpass/simulated_annealing.py' adding 'rstbx/bpcx/__init__.py' adding 'rstbx/bpcx/compare_mosflm_xds.py' adding 'rstbx/bpcx/ersatz_misset.py' adding 'rstbx/bpcx/uc1_2.py' adding 'rstbx/bpcx/uc1_2_positions.py' adding 'rstbx/bpcx/uc1_2_positions_idx.py' adding 'rstbx/bpcx/uc1_2_validate.py' adding 'rstbx/bpcx/uc1_2a.py' adding 'rstbx/bpcx/detector_model/__init__.py' adding 'rstbx/bpcx/detector_model/detector.py' adding 'rstbx/bpcx/detector_model/instrument_specifics.py' adding 'rstbx/bpcx/detector_model/tst_detector_model.py' adding 'rstbx/cftbx/__init__.py' adding 'rstbx/cftbx/coordinate_frame_converter.py' adding 'rstbx/cftbx/coordinate_frame_helpers.py' adding 'rstbx/cftbx/tst_coordinate_frame_converter.py' adding 'rstbx/command_line/__init__.py' adding 'rstbx/command_line/example_viewer.py' adding 'rstbx/command_line/index.py' adding 'rstbx/command_line/simage.create.py' adding 'rstbx/command_line/simage.explore_completeness.py' adding 'rstbx/command_line/simage.solver.py' adding 'rstbx/command_line/simage.wx_display.py' adding 'rstbx/command_line/slip_viewer.py' adding 'rstbx/command_line/viewer.py' adding 'rstbx/detectors/__init__.py' adding 'rstbx/detectors/silicon.py' adding 'rstbx/dials_core/__init__.py' adding 'rstbx/dials_core/integration_core.py' adding 'rstbx/diffraction/__init__.py' adding 'rstbx/diffraction/tst_ewald_sphere.py' adding 'rstbx/diffraction/tst_partial_derivatives.py' adding 'rstbx/diffraction/tst_predict.py' adding 'rstbx/diffraction/fastbragg/__init__.py' adding 'rstbx/diffraction/fastbragg/tst_bragg_minimal.py' adding 'rstbx/diffraction/fastbragg/tst_utils_clustering.py' adding 'rstbx/dps_core/__init__.py' adding 'rstbx/dps_core/basis_choice.py' adding 'rstbx/dps_core/cell_assessment.py' adding 'rstbx/dps_core/constrainment.py' adding 'rstbx/dps_core/lepage.py' adding 'rstbx/dps_core/sampling.py' adding 'rstbx/dps_core/tst_iotbx_converter.py' adding 'rstbx/dps_core/zuoreduction.py' adding 'rstbx/indexing/__init__.py' adding 'rstbx/indexing/do_index.py' adding 'rstbx/indexing/tst_auto_monoscan.py' adding 'rstbx/indexing/tst_dataset1.py' adding 'rstbx/indexing_api/__init__.py' adding 'rstbx/indexing_api/basis_choice.py' adding 'rstbx/indexing_api/force_cell.py' adding 'rstbx/indexing_api/lattice.py' adding 'rstbx/indexing_api/nearest_neighbor.py' adding 'rstbx/indexing_api/outlier_detection.py' adding 'rstbx/indexing_api/outlier_procedure.py' adding 'rstbx/indexing_api/sampling.py' adding 'rstbx/indexing_api/test_dps.py' adding 'rstbx/indexing_api/tools.py' adding 'rstbx/new_horizons/__init__.py' adding 'rstbx/new_horizons/index.py' adding 'rstbx/new_horizons/oscillation_shots.py' adding 'rstbx/new_horizons/pixel_spread.py' adding 'rstbx/new_horizons/speckfinder.py' adding 'rstbx/new_horizons/spot_shape.py' adding 'rstbx/new_horizons/stats_index.py' adding 'rstbx/outlier_spots/__init__.py' adding 'rstbx/outlier_spots/fit_distribution.py' adding 'rstbx/phil/__init__.py' adding 'rstbx/phil/phil_preferences.py' adding 'rstbx/phil/preferences.py' adding 'rstbx/phil/scope.py' adding 'rstbx/simage/__init__.py' adding 'rstbx/simage/create.py' adding 'rstbx/simage/explore_completeness.py' adding 'rstbx/simage/integrate_crude.py' adding 'rstbx/simage/refine_uc_cr.py' adding 'rstbx/simage/run_labelit_index.py' adding 'rstbx/simage/run_spotfinder.py' adding 'rstbx/simage/solver.py' adding 'rstbx/simage/tst.py' adding 'rstbx/simage/wx_display.py' adding 'rstbx/simulation/__init__.py' adding 'rstbx/simulation/constants.py' adding 'rstbx/simulation/sim_pdf.py' adding 'rstbx/simulation/sim_utils.py' adding 'rstbx/simulation/tst_xfel1_simple.py' adding 'rstbx/slip_viewer/__init__.py' adding 'rstbx/slip_viewer/calibration_frame.py' adding 'rstbx/slip_viewer/example_frame_plugin_hidden.py' adding 'rstbx/slip_viewer/frame.py' adding 'rstbx/slip_viewer/pyslip.py' adding 'rstbx/slip_viewer/ring_frame.py' adding 'rstbx/slip_viewer/score_frame.py' adding 'rstbx/slip_viewer/slip_display.py' adding 'rstbx/slip_viewer/slip_viewer_image_factory.py' adding 'rstbx/slip_viewer/tile_generation.py' adding 'rstbx/slip_viewer/uc_frame.py' adding 'rstbx/sublattice_support/__init__.py' adding 'rstbx/sublattice_support/change_basis.py' adding 'rstbx/sublattice_support/tst_sublattice.py' adding 'rstbx/symmetry/__init__.py' adding 'rstbx/symmetry/sgtbx_adaptor.py' adding 'rstbx/symmetry/subgroup.py' adding 'rstbx/symmetry/constraints/__init__.py' adding 'rstbx/symmetry/constraints/g_gradients.py' adding 'rstbx/symmetry/constraints/parameter_reduction.py' adding 'rstbx/viewer/__init__.py' adding 'rstbx/viewer/calibration.py' adding 'rstbx/viewer/calibration_frame.py' adding 'rstbx/viewer/controls.py' adding 'rstbx/viewer/dataset.py' adding 'rstbx/viewer/display.py' adding 'rstbx/viewer/drivers.py' adding 'rstbx/viewer/frame.py' adding 'rstbx/viewer/indexing.py' adding 'rstbx/viewer/integration.py' adding 'rstbx/viewer/pixels3d.py' adding 'rstbx/viewer/processing.py' adding 'rstbx/viewer/results_base.py' adding 'rstbx/viewer/spotfinder_frame.py' adding 'rstbx/viewer/spotfinder_wrap.py' adding 'rstbx/viewer/tst.py' adding 'scitbx/__init__.py' adding 'scitbx/cross_entropy.py' adding 'scitbx/cubicle_neighbors.py' adding 'scitbx/differential_evolution.py' adding 'scitbx/direct_search_simulated_annealing.py' adding 'scitbx/fftpack.py' adding 'scitbx/genetic_algorithm_with_mp.py' adding 'scitbx/golden_section_search.py' adding 'scitbx/lbfgsb.py' adding 'scitbx/libtbx_refresh.py' adding 'scitbx/minimizers.py' adding 'scitbx/minpack.py' adding 'scitbx/r3_utils.py' adding 'scitbx/regular_grid_on_unit_sphere.py' adding 'scitbx/restraints.py' adding 'scitbx/run_tests.py' adding 'scitbx/simplex.py' adding 'scitbx/smoothing.py' adding 'scitbx/array_family/__init__.py' adding 'scitbx/array_family/flex.py' adding 'scitbx/array_family/shared.py' adding 'scitbx/array_family/accessors/__init__.py' adding 'scitbx/array_family/boost_python/__init__.py' adding 'scitbx/array_family/boost_python/regression_test.py' adding 'scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py' adding 'scitbx/array_family/boost_python/tst_flex.py' adding 'scitbx/array_family/boost_python/tst_flex_argument_passing.py' adding 'scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py' adding 'scitbx/array_family/boost_python/tst_numpy_bridge.py' adding 'scitbx/array_family/boost_python/tst_shared.py' adding 'scitbx/array_family/boost_python/tst_smart_selection.py' adding 'scitbx/array_family/detail/__init__.py' adding 'scitbx/boost_python/__init__.py' adding 'scitbx/command_line/__init__.py' adding 'scitbx/command_line/apply_tapenade_hints.py' adding 'scitbx/command_line/generate_error_h.py' adding 'scitbx/command_line/histogram.py' adding 'scitbx/command_line/show_exp_times.py' adding 'scitbx/command_line/show_sizes.py' adding 'scitbx/command_line/unicode_examples.py' adding 'scitbx/dtmin/__init__.py' adding 'scitbx/dtmin/auxiliary.py' adding 'scitbx/dtmin/bounds.py' adding 'scitbx/dtmin/compulsory.py' adding 'scitbx/dtmin/min_logging.py' adding 'scitbx/dtmin/minimizer.py' adding 'scitbx/dtmin/optional.py' adding 'scitbx/dtmin/realsymmetricpseudoinverse.py' adding 'scitbx/dtmin/refinebase.py' adding 'scitbx/dtmin/reparams.py' adding 'scitbx/dtmin/twisted_gaussian.py' adding 'scitbx/dtmin/regression/__init__.py' adding 'scitbx/dtmin/regression/tst_dtmin_basic.py' adding 'scitbx/dtmin/regression/tst_dtmin_booth.py' adding 'scitbx/dtmin/regression/tst_dtmin_twisted.py' adding 'scitbx/error/__init__.py' adding 'scitbx/error/tst_error.py' adding 'scitbx/examples/__init__.py' adding 'scitbx/examples/bootstrap.py' adding 'scitbx/examples/chebyshev_lsq_example.py' adding 'scitbx/examples/flex_array_loops.py' adding 'scitbx/examples/flex_grid.py' adding 'scitbx/examples/functions.py' adding 'scitbx/examples/immoptibox_ports.py' adding 'scitbx/examples/integrating_a_weighted_sinc_function.py' adding 'scitbx/examples/lbfgs_linear_least_squares_fit.py' adding 'scitbx/examples/lbfgs_recipe.py' adding 'scitbx/examples/minimizer_comparisons.py' adding 'scitbx/examples/principal_axes_of_inertia.py' adding 'scitbx/examples/rigid_body_refinement_core.py' adding 'scitbx/examples/bevington/__init__.py' adding 'scitbx/examples/bevington/silver.py' adding 'scitbx/glmtbx/__init__.py' adding 'scitbx/glmtbx/boost_python/__init__.py' adding 'scitbx/glmtbx/tests/__init__.py' adding 'scitbx/glmtbx/tests/tst.py' adding 'scitbx/graph/__init__.py' adding 'scitbx/graph/rigidity.py' adding 'scitbx/graph/rigidity_matrix_symbolic.py' adding 'scitbx/graph/tardy_tree.py' adding 'scitbx/graph/test_cases_tardy_pdb.py' adding 'scitbx/graph/tst_rigidity.py' adding 'scitbx/graph/tst_tardy_tree.py' adding 'scitbx/graph/tst_tardy_tree_find_paths.py' adding 'scitbx/graph/tst_utils.py' adding 'scitbx/graph/utils.py' adding 'scitbx/graphics_utils/__init__.py' adding 'scitbx/graphics_utils/tst.py' adding 'scitbx/iso_surface/__init__.py' adding 'scitbx/iso_surface/tst_iso_surface.py' adding 'scitbx/lbfgs/__init__.py' adding 'scitbx/lbfgs/tst_curvatures.py' adding 'scitbx/lbfgs/tst_ext.py' adding 'scitbx/lbfgs/tst_func_free_line_search.py' adding 'scitbx/lbfgs/tst_lbfgs_fem.py' adding 'scitbx/lbfgs/tst_mpi_split_evaluator.py' adding 'scitbx/lbfgs/dev/__init__.py' adding 'scitbx/lbfgs/dev/run.py' adding 'scitbx/lbfgs/dev/twisted_gaussian.py' adding 'scitbx/linalg/__init__.py' adding 'scitbx/linalg/eigensystem.py' adding 'scitbx/linalg/ext.py' adding 'scitbx/linalg/householder.py' adding 'scitbx/linalg/svd.py' adding 'scitbx/linalg/boost_python/__init__.py' adding 'scitbx/linalg/tests/__init__.py' adding 'scitbx/linalg/tests/tst_cholesky.py' adding 'scitbx/linalg/tests/tst_eigensystem.py' adding 'scitbx/linalg/tests/tst_lapack_dsyev.py' adding 'scitbx/linalg/tests/tst_lapack_svd.py' adding 'scitbx/linalg/tests/tst_matrix.py' adding 'scitbx/linalg/tests/tst_svd.py' adding 'scitbx/line_search/__init__.py' adding 'scitbx/lstbx/__init__.py' adding 'scitbx/lstbx/normal_eqns.py' adding 'scitbx/lstbx/normal_eqns_solving.py' adding 'scitbx/lstbx/benchmarks/__init__.py' adding 'scitbx/lstbx/boost_python/__init__.py' adding 'scitbx/lstbx/tests/__init__.py' adding 'scitbx/lstbx/tests/test_problems.py' adding 'scitbx/lstbx/tests/tst_normal_equations.py' adding 'scitbx/math/__init__.py' adding 'scitbx/math/besselk.py' adding 'scitbx/math/breakpoint.py' adding 'scitbx/math/chebyshev_lsq_fit.py' adding 'scitbx/math/clustering.py' adding 'scitbx/math/cubic_spline.py' adding 'scitbx/math/curve_fitting.py' adding 'scitbx/math/des_3_100_13.py' adding 'scitbx/math/des_3_240_21.py' adding 'scitbx/math/distributions.py' adding 'scitbx/math/euler_angles.py' adding 'scitbx/math/ext.py' adding 'scitbx/math/farey.py' adding 'scitbx/math/fit_peak.py' adding 'scitbx/math/fit_quadratic_function.py' adding 'scitbx/math/fliege_mayer_400.py' adding 'scitbx/math/fliege_mayer_900.py' adding 'scitbx/math/fliege_mayer_900_ylm.py' adding 'scitbx/math/gaussian.py' adding 'scitbx/math/gaussian_fit.py' adding 'scitbx/math/gumbel.py' adding 'scitbx/math/incremental_SO3_sampling.py' adding 'scitbx/math/lefebvre.py' adding 'scitbx/math/minimum_covering_ellipsoid.py' adding 'scitbx/math/multiple_superposition.py' adding 'scitbx/math/periodogram.py' adding 'scitbx/math/scale_curves.py' adding 'scitbx/math/sieve_of_eratosthenes.py' adding 'scitbx/math/so3_lie_algebra.py' adding 'scitbx/math/spe.py' adding 'scitbx/math/sphere_sphere_intersection.py' adding 'scitbx/math/superpose.py' adding 'scitbx/math/tst_2d_zernike.py' adding 'scitbx/math/tst_bessel_zeros.py' adding 'scitbx/math/tst_multivariate_moments.py' adding 'scitbx/math/tst_so3_lie_algebra.py' adding 'scitbx/math/tst_undirected_graph.py' adding 'scitbx/math/tst_zernike.py' adding 'scitbx/math/tst_zernike_mom.py' adding 'scitbx/math/undirected_graph.py' adding 'scitbx/math/zernike_align_fft.py' adding 'scitbx/math/boost_python/__init__.py' adding 'scitbx/math/dev/__init__.py' adding 'scitbx/math/erf/__init__.py' adding 'scitbx/math/tests/__init__.py' adding 'scitbx/math/tests/tst_angle_derivative.py' adding 'scitbx/math/tests/tst_bessel.py' adding 'scitbx/math/tests/tst_clustering.py' adding 'scitbx/math/tests/tst_cubic_equation.py' adding 'scitbx/math/tests/tst_curve_fitting.py' adding 'scitbx/math/tests/tst_dmatrix.py' adding 'scitbx/math/tests/tst_error_propagation_matrix_inverse.py' adding 'scitbx/math/tests/tst_euler_angles.py' adding 'scitbx/math/tests/tst_exp_functions.py' adding 'scitbx/math/tests/tst_fit_peak.py' adding 'scitbx/math/tests/tst_fit_quadratic_function.py' adding 'scitbx/math/tests/tst_g_function.py' adding 'scitbx/math/tests/tst_gaussian.py' adding 'scitbx/math/tests/tst_gaussian_fit_1d_analytical.py' adding 'scitbx/math/tests/tst_gcd.py' adding 'scitbx/math/tests/tst_halton.py' adding 'scitbx/math/tests/tst_line_search.py' adding 'scitbx/math/tests/tst_math.py' adding 'scitbx/math/tests/tst_minimum_covering_ellipsoid.py' adding 'scitbx/math/tests/tst_orthonormal_basis.py' adding 'scitbx/math/tests/tst_periodogram.py' adding 'scitbx/math/tests/tst_quadrature.py' adding 'scitbx/math/tests/tst_r3_rotation.py' adding 'scitbx/math/tests/tst_resample.py' adding 'scitbx/math/tests/tst_similarity_indices.py' adding 'scitbx/math/tests/tst_superpose.py' adding 'scitbx/math/tests/tst_tetrahedron.py' adding 'scitbx/math/tests/tst_uniform_rotation_matrix.py' adding 'scitbx/math/tests/tst_weighted_correlation.py' adding 'scitbx/matrix/__init__.py' adding 'scitbx/matrix/row_echelon.py' adding 'scitbx/matrix/tests/__init__.py' adding 'scitbx/matrix/tests/tst_householder.py' adding 'scitbx/matrix/tests/tst_row_echelon.py' adding 'scitbx/misc/__init__.py' adding 'scitbx/python_utils/__init__.py' adding 'scitbx/python_utils/command_line.py' adding 'scitbx/python_utils/dicts.py' adding 'scitbx/python_utils/graph_tools.py' adding 'scitbx/python_utils/misc.py' adding 'scitbx/python_utils/random_transform.py' adding 'scitbx/python_utils/robust_statistics.py' adding 'scitbx/python_utils/signal_utils.py' adding 'scitbx/python_utils/tst_graph.py' adding 'scitbx/python_utils/tst_random_transform.py' adding 'scitbx/python_utils/tst_robust.py' adding 'scitbx/random/__init__.py' adding 'scitbx/random/boost_python/__init__.py' adding 'scitbx/random/tests/__init__.py' adding 'scitbx/random/tests/tst_random.py' adding 'scitbx/rigid_body/__init__.py' adding 'scitbx/rigid_body/tst.py' adding 'scitbx/rigid_body/essence/__init__.py' adding 'scitbx/rigid_body/essence/body_lib.py' adding 'scitbx/rigid_body/essence/featherstone.py' adding 'scitbx/rigid_body/essence/joint_lib.py' adding 'scitbx/rigid_body/essence/make_bundles.py' adding 'scitbx/rigid_body/essence/spatial_lib.py' adding 'scitbx/rigid_body/essence/tardy.py' adding 'scitbx/rigid_body/essence/tst_basic.py' adding 'scitbx/rigid_body/essence/tst_energy_plots.py' adding 'scitbx/rigid_body/essence/tst_tardy.py' adding 'scitbx/rigid_body/essence/wx_tardy.py' adding 'scitbx/rigid_body/proto/__init__.py' adding 'scitbx/rigid_body/proto/featherstone.py' adding 'scitbx/rigid_body/proto/free_motion_reference_impl.py' adding 'scitbx/rigid_body/proto/joint_lib.py' adding 'scitbx/rigid_body/proto/test_simulation.py' adding 'scitbx/rigid_body/proto/test_utils.py' adding 'scitbx/rigid_body/proto/tst_featherstone.py' adding 'scitbx/rigid_body/proto/tst_free_motion.py' adding 'scitbx/rigid_body/proto/tst_free_motion_hard.py' adding 'scitbx/rigid_body/proto/tst_joint_lib.py' adding 'scitbx/rigid_body/proto/tst_molecules.py' adding 'scitbx/rigid_body/proto/tst_singular.py' adding 'scitbx/rigid_body/proto/tst_spherical_refinement.py' adding 'scitbx/rigid_body/proto/utils.py' adding 'scitbx/rigid_body/proto/wx_free_motion.py' adding 'scitbx/rigid_body/proto/wx_joint_lib.py' adding 'scitbx/rigid_body/proto/wx_molecules.py' adding 'scitbx/serialization/__init__.py' adding 'scitbx/slatec/__init__.py' adding 'scitbx/source_generators/__init__.py' adding 'scitbx/source_generators/flex_fwd_h.py' adding 'scitbx/source_generators/lbfgs_fem.py' adding 'scitbx/source_generators/utils.py' adding 'scitbx/source_generators/array_family/__init__.py' adding 'scitbx/source_generators/array_family/generate_algebras.py' adding 'scitbx/source_generators/array_family/generate_all.py' adding 'scitbx/source_generators/array_family/generate_apply.py' adding 'scitbx/source_generators/array_family/generate_operator_functors.py' adding 'scitbx/source_generators/array_family/generate_operator_traits_builtin.py' adding 'scitbx/source_generators/array_family/generate_reductions.py' adding 'scitbx/source_generators/array_family/generate_std_imports.py' adding 'scitbx/source_generators/array_family/operator_functor_info.py' adding 'scitbx/sparse/__init__.py' adding 'scitbx/sparse/boost_python/__init__.py' adding 'scitbx/sparse/tests/__init__.py' adding 'scitbx/sparse/tests/tst_lu_factorization.py' adding 'scitbx/sparse/tests/tst_sparse.py' adding 'scitbx/stdlib/__init__.py' adding 'scitbx/stl/__init__.py' adding 'scitbx/stl/map.py' adding 'scitbx/stl/set.py' adding 'scitbx/stl/tst_map.py' adding 'scitbx/stl/tst_set.py' adding 'scitbx/stl/tst_vector.py' adding 'scitbx/stl/vector.py' adding 'scitbx/suffixtree/__init__.py' adding 'scitbx/suffixtree/single.py' adding 'scitbx/suffixtree/boost_python/__init__.py' adding 'scitbx/suffixtree/test/__init__.py' adding 'scitbx/suffixtree/test/tst_single.py' adding 'scitbx/tests/__init__.py' adding 'scitbx/tests/differential_evolution.py' adding 'scitbx/tests/direct_search_simulated_annealing.py' adding 'scitbx/tests/golden_section_search.py' adding 'scitbx/tests/simplex.py' adding 'scitbx/tests/tst_basic.py' adding 'scitbx/tests/tst_cubicle_neighbors.py' adding 'scitbx/tests/tst_genetic_algorithm_with_mp.py' adding 'scitbx/tests/tst_minimizer_lbfgs_general.py' adding 'scitbx/tests/tst_r3_utils.py' adding 'scitbx/tests/tst_regular_grid_on_unit_sphere.py' adding 'scitbx/tests/tst_smoothing.py' adding 'scitbx/wigner/__init__.py' adding 'scitbx/wigner/tst_wigner3j.py' adding 'serialtbx/__init__.py' adding 'serialtbx/detector/__init__.py' adding 'serialtbx/detector/cspad.py' adding 'serialtbx/detector/jungfrau.py' adding 'serialtbx/detector/rayonix.py' adding 'serialtbx/detector/xtc.py' adding 'serialtbx/detector/legacy_metrology/__init__.py' adding 'serialtbx/detector/legacy_metrology/cspad_detector.py' adding 'serialtbx/detector/legacy_metrology/generic_detector.py' adding 'serialtbx/detector/legacy_metrology/metrology.py' adding 'serialtbx/mono_simulation/__init__.py' adding 'serialtbx/mono_simulation/max_like.py' adding 'serialtbx/mono_simulation/util.py' adding 'serialtbx/util/__init__.py' adding 'serialtbx/util/construct_frame.py' adding 'serialtbx/util/energy_scan_notch_finder.py' adding 'serialtbx/util/time.py' adding 'simtbx/__init__.py' adding 'simtbx/run_tests.py' adding 'simtbx/diffBragg/__init__.py' adding 'simtbx/diffBragg/attr_list.py' adding 'simtbx/diffBragg/device.py' adding 'simtbx/diffBragg/ensemble_refine_launcher.py' adding 'simtbx/diffBragg/hopper_ensemble_utils.py' adding 'simtbx/diffBragg/hopper_io.py' adding 'simtbx/diffBragg/hopper_utils.py' adding 'simtbx/diffBragg/mpi_logger.py' adding 'simtbx/diffBragg/parameter_errors.py' adding 'simtbx/diffBragg/phil.py' adding 'simtbx/diffBragg/prep_stage2_input.py' adding 'simtbx/diffBragg/psf.py' adding 'simtbx/diffBragg/stage_two_utils.py' adding 'simtbx/diffBragg/utils.py' adding 'simtbx/diffBragg/refiners/__init__.py' adding 'simtbx/diffBragg/refiners/base_refiner.py' adding 'simtbx/diffBragg/refiners/geometry.py' adding 'simtbx/diffBragg/refiners/parameters.py' adding 'simtbx/diffBragg/refiners/stage_two_refiner.py' adding 'simtbx/diffBragg/refiners/crystal_systems/__init__.py' adding 'simtbx/diffBragg/refiners/crystal_systems/hexagonal.py' adding 'simtbx/diffBragg/refiners/crystal_systems/manager.py' adding 'simtbx/diffBragg/refiners/crystal_systems/monoclinic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/tetragonal.py' adding 'simtbx/gpu/__init__.py' adding 'simtbx/gpu/tst_exafel_api.py' adding 'simtbx/gpu/tst_gpu_multisource_background.py' adding 'simtbx/gpu/tst_shoeboxes.py' adding 'simtbx/kokkos/__init__.py' adding 'simtbx/kokkos/tst_kokkos_lib.py' adding 'simtbx/modeling/FormatHDF5AttributeGeometry.py' adding 'simtbx/modeling/__init__.py' adding 'simtbx/modeling/forward_models.py' adding 'simtbx/modeling/predictions.py' adding 'simtbx/nanoBragg/__init__.py' adding 'simtbx/nanoBragg/anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/nanoBragg_beam.py' adding 'simtbx/nanoBragg/nanoBragg_crystal.py' adding 'simtbx/nanoBragg/nanoBragg_gui_dialogs.py' adding 'simtbx/nanoBragg/nanoBragg_gui_frames.py' adding 'simtbx/nanoBragg/nanoBragg_gui_init.py' adding 'simtbx/nanoBragg/nanoBragg_input.py' adding 'simtbx/nanoBragg/nanoBragg_threads.py' adding 'simtbx/nanoBragg/sim_data.py' adding 'simtbx/nanoBragg/tst_anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/tst_gauss_argchk.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity2.py' adding 'simtbx/nanoBragg/tst_multisource_background.py' adding 'simtbx/nanoBragg/tst_nanoBragg_basic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_cbf_write.py' adding 'simtbx/nanoBragg/tst_nanoBragg_minimal.py' adding 'simtbx/nanoBragg/tst_nanoBragg_mosaic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_multipanel.py' adding 'simtbx/nanoBragg/tst_nanoBragg_pilatus.py' adding 'simtbx/nanoBragg/utils.py' adding 'simtbx/pixel/__init__.py' adding 'smtbx/__init__.py' adding 'smtbx/development.py' adding 'smtbx/libtbx_refresh.py' adding 'smtbx/run_tests.py' adding 'smtbx/utils.py' adding 'smtbx/ab_initio/__init__.py' adding 'smtbx/ab_initio/charge_flipping.py' adding 'smtbx/ab_initio/tests/__init__.py' adding 'smtbx/ab_initio/tests/tst_ab_initio_ext.py' adding 'smtbx/ab_initio/tests/tst_charge_flipping.py' adding 'smtbx/absolute_structure/__init__.py' adding 'smtbx/array_family/__init__.py' adding 'smtbx/command_line/__init__.py' adding 'smtbx/command_line/absolute_structure.py' adding 'smtbx/command_line/anom_refine.py' adding 'smtbx/command_line/benchmark_refinement.py' adding 'smtbx/command_line/masks.py' adding 'smtbx/command_line/refine.py' adding 'smtbx/masks/__init__.py' adding 'smtbx/refinement/__init__.py' adding 'smtbx/refinement/least_squares.py' adding 'smtbx/refinement/weighting_schemes.py' adding 'smtbx/refinement/constraints/__init__.py' adding 'smtbx/refinement/constraints/adp.py' adding 'smtbx/refinement/constraints/all.py' adding 'smtbx/refinement/constraints/fpfdp.py' adding 'smtbx/refinement/constraints/occupancy.py' adding 'smtbx/refinement/constraints/rigid.py' adding 'smtbx/refinement/constraints/site.py' adding 'smtbx/refinement/constraints/geometrical/__init__.py' adding 'smtbx/refinement/constraints/geometrical/all.py' adding 'smtbx/refinement/constraints/geometrical/hydrogens.py' adding 'smtbx/refinement/constraints/tests/__init__.py' adding 'smtbx/refinement/constraints/tests/tst_constrained_structure.py' adding 'smtbx/refinement/constraints/tests/tst_direction.py' adding 'smtbx/refinement/constraints/tests/tst_disorder.py' adding 'smtbx/refinement/constraints/tests/tst_lbfgs.py' adding 'smtbx/refinement/constraints/tests/tst_occupancies.py' adding 'smtbx/refinement/constraints/tests/tst_reparametrisation.py' adding 'smtbx/refinement/constraints/tests/tst_rigid.py' adding 'smtbx/refinement/constraints/tests/tst_same_group.py' adding 'smtbx/refinement/restraints/__init__.py' adding 'smtbx/refinement/restraints/adp_restraints.py' adding 'smtbx/refinement/restraints/origin_fixing_restraints.py' adding 'smtbx/regression/__init__.py' adding 'smtbx/regression/tst_commandline_anomrefine.py' adding 'smtbx/regression/tst_commandline_refine.py' adding 'smtbx/regression/test_data/__init__.py' adding 'smtbx/source_generators/__init__.py' adding 'smtbx/source_generators/flex_fwd_h.py' adding 'smtbx/stl/__init__.py' adding 'smtbx/stl/map.py' adding 'smtbx/structure_factors/__init__.py' adding 'smtbx/structure_factors/direct/__init__.py' adding 'spotfinder/__init__.py' adding 'spotfinder/exception.py' adding 'spotfinder/run_tests.py' adding 'spotfinder/applications/__init__.py' adding 'spotfinder/applications/image_viewer.py' adding 'spotfinder/applications/practical_heuristics.py' adding 'spotfinder/applications/signal_strength.py' adding 'spotfinder/applications/stats_distl.py' adding 'spotfinder/applications/wrappers.py' adding 'spotfinder/applications/heuristic_tbx/__init__.py' adding 'spotfinder/applications/heuristic_tbx/ice2.py' adding 'spotfinder/applications/heuristic_tbx/ice_nztt.py' adding 'spotfinder/applications/heuristic_tbx/method2_resolution.py' adding 'spotfinder/applications/heuristic_tbx/spotreporter.py' adding 'spotfinder/applications/xfel/__init__.py' adding 'spotfinder/applications/xfel/correction_vector_plot.py' adding 'spotfinder/applications/xfel/cxi_phil.py' adding 'spotfinder/applications/xfel/cxi_run3.py' adding 'spotfinder/array_family/__init__.py' adding 'spotfinder/array_family/flex.py' adding 'spotfinder/command_line/__init__.py' adding 'spotfinder/command_line/find_active_area.py' adding 'spotfinder/command_line/image_viewer.py' adding 'spotfinder/command_line/mp_spotfinder_server_read_file.py' adding 'spotfinder/command_line/signal_strength.py' adding 'spotfinder/command_line/sweep_strength.py' adding 'spotfinder/command_line/thin_client.py' adding 'spotfinder/core_toolbox/__init__.py' adding 'spotfinder/core_toolbox/close_spots_detail.py' adding 'spotfinder/diffraction/__init__.py' adding 'spotfinder/diffraction/geometry.py' adding 'spotfinder/diffraction/imagefiles.py' adding 'spotfinder/dxtbx_toolbox/__init__.py' adding 'spotfinder/dxtbx_toolbox/practical_heuristics.py' adding 'spotfinder/math_support/__init__.py' adding 'spotfinder/math_support/sphere_formulae.py' adding 'spotfinder/servers/__init__.py' adding 'spotfinder/servers/adsc_client.py' adding 'spotfinder/servers/apache.py' adding 'spotfinder/servers/apache_bcsb.py' adding 'spotfinder/servers/apache_dials.py' adding 'spotfinder/servers/apache_utils.py' adding 'spotfinder/servers/bcsb_client_example.py' adding 'spotfinder/servers/general_client_example.py' adding 'spotfinder/servers/mp_spotfinder_server_is_alive.py' adding 'spotfinder/servers/mp_spotfinder_server_read_file.py' adding 'spotfinder/servers/multipart_encoder.py' adding 'spotfinder/servers/pilatus_client.py' adding 'spotfinder/servers/specific_client_example.py' adding 'spotfinder/servers/spotfinder_server_client_push.py' adding 'spotfinder/servers/spotfinder_server_read_file.py' adding 'spotfinder/servers/thin_client.py' adding 'wxtbx/__init__.py' adding 'wxtbx/adp_statistics.py' adding 'wxtbx/anomalous_scattering.py' adding 'wxtbx/app.py' adding 'wxtbx/b_plot.py' adding 'wxtbx/bitmaps.py' adding 'wxtbx/browser.py' adding 'wxtbx/checklistctrl.py' adding 'wxtbx/custom_restraints.py' adding 'wxtbx/ensemble_validation.py' adding 'wxtbx/errors.py' adding 'wxtbx/heavy_atoms.py' adding 'wxtbx/icons.py' adding 'wxtbx/info_panels.py' adding 'wxtbx/layout.py' adding 'wxtbx/listeditor.py' adding 'wxtbx/metallicbutton.py' adding 'wxtbx/misc_dialogs.py' adding 'wxtbx/monitor.py' adding 'wxtbx/mtz_dump.py' adding 'wxtbx/path_dialogs.py' adding 'wxtbx/pdb_editor.py' adding 'wxtbx/polygon.py' adding 'wxtbx/polygon_db_viewer.py' adding 'wxtbx/process_control.py' adding 'wxtbx/qstat_view.py' adding 'wxtbx/segmentedctrl.py' adding 'wxtbx/sequence_view.py' adding 'wxtbx/symmetry_dialog.py' adding 'wxtbx/tables.py' adding 'wxtbx/utils.py' adding 'wxtbx/windows.py' adding 'wxtbx/wx4_compatibility.py' adding 'wxtbx/xtriage.py' adding 'wxtbx/command_line/__init__.py' adding 'wxtbx/command_line/anomalous_differences_histogram.py' adding 'wxtbx/command_line/b_plot.py' adding 'wxtbx/command_line/inspect_r_free_flags.py' adding 'wxtbx/command_line/loggraph.py' adding 'wxtbx/command_line/pdb_editor.py' adding 'wxtbx/command_line/pdb_statistics.py' adding 'wxtbx/command_line/plan_sad_experiment.py' adding 'wxtbx/command_line/plot_anomalous_scattering.py' adding 'wxtbx/command_line/show_file_info.py' adding 'wxtbx/command_line/wxpython.py' adding 'wxtbx/command_line/xtriage.py' adding 'wxtbx/phil_controls/__init__.py' adding 'wxtbx/phil_controls/array_label.py' adding 'wxtbx/phil_controls/boolctrl.py' adding 'wxtbx/phil_controls/choice.py' adding 'wxtbx/phil_controls/choice_multi.py' adding 'wxtbx/phil_controls/floatctrl.py' adding 'wxtbx/phil_controls/floats.py' adding 'wxtbx/phil_controls/intctrl.py' adding 'wxtbx/phil_controls/ints.py' adding 'wxtbx/phil_controls/misc_ctrls.py' adding 'wxtbx/phil_controls/numbers.py' adding 'wxtbx/phil_controls/path.py' adding 'wxtbx/phil_controls/simple_dialogs.py' adding 'wxtbx/phil_controls/space_group.py' adding 'wxtbx/phil_controls/strctrl.py' adding 'wxtbx/phil_controls/strings.py' adding 'wxtbx/phil_controls/symop.py' adding 'wxtbx/phil_controls/text_base.py' adding 'wxtbx/phil_controls/tree.py' adding 'wxtbx/phil_controls/tribool.py' adding 'wxtbx/phil_controls/unit_cell.py' adding 'wxtbx/plots/__init__.py' adding 'wxtbx/plots/emringer.py' adding 'wxtbx/plots/molprobity.py' adding 'wxtbx/reports/__init__.py' adding 'wxtbx/reports/blast.py' adding 'wxtbx/reports/pdb_symmetry.py' adding 'xcif/__init__.py' adding 'xcif/run_tests.py' adding 'xcif/benchmarks/__init__.py' adding 'xcif/benchmarks/run_benchmarks.py' adding 'xcif/regression/__init__.py' adding 'xcif/regression/tst_api_compat.py' adding 'xcif/regression/tst_bindings.py' adding 'xcif/regression/tst_example_parse.py' adding 'xcif/regression/tst_example_tokenize.py' adding 'xcif/regression/tst_gil_release.py' adding 'xcif/regression/tst_iotbx_cif_reader_engine.py' adding 'xcif/regression/tst_iotbx_cif_reader_parity.py' adding 'xcif/regression/tst_memory.py' adding 'xcif/regression/tst_non_strict_mode.py' adding 'xcif/regression/tst_parse_verify.py' adding 'xcif/regression/tst_pdb_coordinates.py' adding 'xcif/regression/tst_pdb_sf.py' adding 'xcif/regression/tst_quoted_string_delimiter.py' adding 'xcif/regression/tst_roundtrip.py' adding 'xcif/regression/tst_semicolon_field_strict.py' adding 'xcif/regression/tst_string_interning.py' adding 'xcif/regression/tst_utf8.py' adding 'cctbx-2023.12.dist-info/METADATA' adding 'cctbx-2023.12.dist-info/WHEEL' adding 'cctbx-2023.12.dist-info/top_level.txt' adding 'cctbx-2023.12.dist-info/RECORD' removing build/bdist.linux-loongarch64/wheel Successfully built cctbx-2023.12-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module I: pybuild plugin_pyproject:142: Building wheel for python3.13 with "build" module I: pybuild base:385: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx * Building wheel... running bdist_wheel running build running build_py copying ccp4io_adaptbx/tst.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/copy_files.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/__init__.py -> build/lib/ccp4io_adaptbx copying annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx copying annlib_adaptbx/run_tests.py -> build/lib/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/self_match.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/sample.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/source_generators/generate_all.py -> build/lib/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/__init__.py -> build/lib/annlib_adaptbx/source_generators running egg_info writing cctbx.egg-info/PKG-INFO writing dependency_links to cctbx.egg-info/dependency_links.txt writing requirements to cctbx.egg-info/requires.txt writing top-level names to cctbx.egg-info/top_level.txt reading manifest file 'cctbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'cctbx.egg-info/SOURCES.txt' installing to build/bdist.linux-loongarch64/wheel running install running install_lib creating build/bdist.linux-loongarch64/wheel creating build/bdist.linux-loongarch64/wheel/boost copying build/lib/boost/rational.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/python.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/optional.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/tuple.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost copying build/lib/boost/std_pair.py -> build/bdist.linux-loongarch64/wheel/./boost creating build/bdist.linux-loongarch64/wheel/cctbx_website creating build/bdist.linux-loongarch64/wheel/cctbx_website/command_line copying build/lib/cctbx_website/command_line/tst_comment_to_docstring.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/comment_to_docstring.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_html.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_for_boost.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line creating build/bdist.linux-loongarch64/wheel/cctbx_website/regression copying build/lib/cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_12_script_compare_ss.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_11_script_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_8_doc_maps_intro.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_13_script_ideal_ss.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_1_template.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_py_from_html.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/exercise.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_17_script_rfactors.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website copying build/lib/cctbx_website/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website copying build/lib/cctbx_website/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website creating build/bdist.linux-loongarch64/wheel/boost_adaptbx creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/rational.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/python.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/optional.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/tuple.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/std_pair.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/double_overflow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_platform_info.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/segmentation_fault.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/gcd.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/divide_by_zero.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/inexact.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/int_overflow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/lcm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_environ_usage.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/hybrid_times.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/minimum_cut_enumerate.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/maximum_clique.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/clustering_algorithm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/utility.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/breadth_first_search.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/graph_structure_comparison.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/min_cut_max_flow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/connected_component_algorithm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/metric.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx creating build/bdist.linux-loongarch64/wheel/mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninit.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/transdent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/diangle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninput.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitealyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenout.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/dualparse.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/mainchain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenamedefs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename creating build/bdist.linux-loongarch64/wheel/mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/nrubs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage creating build/bdist.linux-loongarch64/wheel/mmtbx/maps copying build/lib/mmtbx/maps/tst_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fem.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/composite_omit_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/mtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/kick.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fobs_minus_fobs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/map_model_cc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement copying build/lib/mmtbx/refinement/targets.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tardy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/wx_tardy_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_fit_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/occupancies.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/print_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_weight.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_small_molecule.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residues.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/weight.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/individual_sites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/explode_and_refine.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/adp.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/occupancy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/flip_peptide_side_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/anomalous_scatterer_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/group.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_refinement_flags.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/inspect_tardy_trajectory.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_occupancy_selections.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/calculators.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/refinement_flags.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/orca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/wrappers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/adp_refinement.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/energy_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_real_space_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_web_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_entry_request.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_web_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb creating build/bdist.linux-loongarch64/wheel/mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_validate_H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_minimize.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/neutron_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/reduce_hydrogen.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_connectivity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/validate_H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/parameterization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_coefficients.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_0.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/find.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/connectivity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/build_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_9.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens creating build/bdist.linux-loongarch64/wheel/mmtbx/alignment copying build/lib/mmtbx/alignment/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/alignment creating build/bdist.linux-loongarch64/wheel/mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/cif_parser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components creating build/bdist.linux-loongarch64/wheel/mmtbx/masks copying build/lib/mmtbx/masks/tst_masks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/tst_asu_mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/lattice.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/proq2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/den copying build/lib/mmtbx/den/plot_weights.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den copying build/lib/mmtbx/den/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den copying build/lib/mmtbx/den/refinement.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den creating build/bdist.linux-loongarch64/wheel/mmtbx/command_line copying build/lib/mmtbx/command_line/sort_hetatms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/show_r_factors_by_shell.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fetch_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_rotarama_cache.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/molprobity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_fem.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_tls_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mon_lib_cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_cablam_cache.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/models_as_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_puckers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/altloc_remediate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cif_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/atom_valence_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/table_one.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ligand_restraints_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/density_modification.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/debug_riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/nonbonded_overlaps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/r_factor_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/water_b_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rigid_bond_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/kinemage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validation_summary.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_box.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xmanip.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/remove_outliers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fab_elbow_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hydrogenate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/taam_minus_iam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_atom_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reciprocal_space_arrays.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/electrons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/apply_ncs_to_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/grow_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/f000.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rank_scale_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cc_star.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/estimate_bijvoet_ratio.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_diff_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/distance_difference.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prepare_pdb_deposition.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probe2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/sisa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/where_is_that_cif_file.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/super.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer_score.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/search_pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_model_histogram.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/perigee.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_model_distances.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maximum_entropy_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_residue_in_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/refine_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/verify_mon_lib_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_peaks_holes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prune_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_atom_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mtz2map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename_old.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fake_f_obs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fobs_minus_fobs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_H_cl_app.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_aev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/massage_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line creating build/bdist.linux-loongarch64/wheel/mmtbx/validation copying build/lib/mmtbx/validation/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/fav_lists.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/waters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_arguments.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_experimental.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_symmetry_SS.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_model_properties.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze_rare.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_keep_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_find_region_max_value.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/run_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_waters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbd_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/graphics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/experimental.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/convert_from_text.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/convert_lists.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ensembles.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/phi_psi_2_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/model_properties.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/kinemage_templates.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_mpscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/table_from_json.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comprehensive_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/analyze_peptides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_others_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/chain_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/datasets.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry copying build/lib/mmtbx/geometry/shared_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/topology.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/clash.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/altloc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/sphere_surface_sampling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/indexing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/asa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry creating build/bdist.linux-loongarch64/wheel/mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_metal_link_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_loop_closure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_apply_cif_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_maps_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_model_cc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_type_parser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/make_fake_anomalous_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mtz2map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geo_min_restraints_phil.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_command_line_input.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_timeout.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_statistics_output.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ligand_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sequence_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_table.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_origin_ids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_adp_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ml_estimate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_minimize_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_arrows_on_plot.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_multi_residue_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_flipping_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_type_registry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_merge.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_pairs_within.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_dedeuterate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_utils_merge_models.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_mtrix.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/tst_real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_remediate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_table_one.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sort_hetatms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/tst_clashes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_msa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_dynamics_cli.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_no_cryst1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_prune_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validation_summary.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sampled_model_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_models_to_from_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_get_t_scheme.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tst_polder_box.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_psi_phi_extraction.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_and_dm.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_schrodinger_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_chain_break.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rigid_bond_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_refine_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_fd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_alignment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_special_term_at_end.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_h_to_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_isomorphous_difference_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_lrv.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_examples.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_probe.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_ccs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cis_trans_peptide_link.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rank_scale_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cc_star.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/kbu_refinery.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_mosaic.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/f_model_all_scales.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/mosaic.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/real_space copying build/lib/mmtbx/real_space/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/real_space copying build/lib/mmtbx/real_space/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/real_space creating build/bdist.linux-loongarch64/wheel/mmtbx/ligands copying build/lib/mmtbx/ligands/tst_xtal_screens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/hierarchy_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_ready_set_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/elbow_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/electrons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_basics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_electron_scripting.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/rdkit_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/chemistry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/xtal_screens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/map_tools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building creating build/bdist.linux-loongarch64/wheel/mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/tst_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/lifi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/minimize_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/extend_sidechains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/merge_models.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building creating build/bdist.linux-loongarch64/wheel/mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/starting_conformations.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/ccd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/max_lik copying build/lib/mmtbx/max_lik/max_like_non_uniform.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_maxlik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_max_lik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/maxlik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik creating build/bdist.linux-loongarch64/wheel/mmtbx/utils copying build/lib/mmtbx/utils/ntc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/rotatable_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/fab_elbow_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/grid2d.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/tst_switch_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils creating build/bdist.linux-loongarch64/wheel/mmtbx/nci copying build/lib/mmtbx/nci/skew_kurt_plot.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/data_filtering.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/tst_hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci creating build/bdist.linux-loongarch64/wheel/mmtbx/density_modification copying build/lib/mmtbx/density_modification/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/density_modification copying build/lib/mmtbx/density_modification/tst_density_modification.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/density_modification creating build/bdist.linux-loongarch64/wheel/mmtbx/ions copying build/lib/mmtbx/ions/identify.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_approx_zn.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_symmetry_axis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pickle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/halides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_geometries.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions creating build/bdist.linux-loongarch64/wheel/mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/dump_sites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/tst_validate_mg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/build.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_k.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/environment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_parameters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_validate_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca_svm.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_environment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_mg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions creating build/bdist.linux-loongarch64/wheel/mmtbx/model copying build/lib/mmtbx/model/model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model creating build/bdist.linux-loongarch64/wheel/mmtbx/reduce copying build/lib/mmtbx/reduce/Optimizers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/InteractionGraph.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/Movers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/arrays.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/f_model_info.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/f_model copying build/lib/mmtbx/f_model/f_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/f_model_info.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model creating build/bdist.linux-loongarch64/wheel/mmtbx/ncs copying build/lib/mmtbx/ncs/cartesian_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/tncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_restraints_group_list.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/xmanip.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/dynamics copying build/lib/mmtbx/dynamics/constants.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/ensemble_cd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_sa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/cartesian_dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_cartesian_dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/pdb_distances.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/find_peaks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/model_vs_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/tls copying build/lib/mmtbx/tls/perm10.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/command_line.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/ladp.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/optimise_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm15.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/decompose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm12.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm13.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm14.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm11.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/xmanip_tasks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/msa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/resolve_resources.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/invariant_domain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/solvent copying build/lib/mmtbx/solvent/ensemble_ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/map_to_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent creating build/bdist.linux-loongarch64/wheel/mmtbx/programs copying build/lib/mmtbx/programs/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fetch.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_puckers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_valence_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ligand_restraints_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/debug_riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/nonbonded_overlaps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/water_b_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/elbow_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hydrogenate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/taam_minus_iam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_atom_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/prepare_pdb_deposition.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probe2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename_old.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs creating build/bdist.linux-loongarch64/wheel/mmtbx/polygon copying build/lib/mmtbx/polygon/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_polygon_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/output.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_gui.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon creating build/bdist.linux-loongarch64/wheel/mmtbx/sisa creating build/bdist.linux-loongarch64/wheel/mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_ga.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_masks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_util.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_input.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_mtz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_optimize.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa copying build/lib/mmtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/grow_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/rotamer copying build/lib/mmtbx/rotamer/nqh.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/sidechain_angles.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/graphics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_rotamer_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/rotamer_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/n_dim_table.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer creating build/bdist.linux-loongarch64/wheel/mmtbx/ringer copying build/lib/mmtbx/ringer/tst_emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_scoring.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/tst_em_rscc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rolling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rscc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/rsr copying build/lib/mmtbx/rsr/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rsr copying build/lib/mmtbx/rsr/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rsr copying build/lib/mmtbx/domains_from_pae.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/probe copying build/lib/mmtbx/probe/tst_mmtbx_probe_ext.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/AtomTypes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/Helpers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe creating build/bdist.linux-loongarch64/wheel/mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_idealized_aa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_metal_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/mmtbx_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/hydrogen_restrictions.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_carbo_linking.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_neutron_distance.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_chiral_values.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rotamer_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/idealized_aa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conv_v2_v3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_hand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_chg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_motif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/server.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/bondlength_defaults.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_all_cif_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_user_supplied_library.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conformation_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rotamer_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_paral_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_server.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_correct_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_superpose_ideal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_deuterium_terminii.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_protein_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_linking.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_setup.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_mixins.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/geostd_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library creating build/bdist.linux-loongarch64/wheel/mmtbx/twinning copying build/lib/mmtbx/twinning/probabalistic_detwinning.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/twin_f_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning creating build/bdist.linux-loongarch64/wheel/mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/regularize_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/find_ss_from_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst_segid.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure creating build/bdist.linux-loongarch64/wheel/mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_io.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/tst_insertion_codes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/secondary_structure_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/proteins.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/ss_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/nucleic_acids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure creating build/bdist.linux-loongarch64/wheel/mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/sample_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/rotamer_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/all_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues creating build/bdist.linux-loongarch64/wheel/mmtbx/scaling copying build/lib/mmtbx/scaling/bayesian_estimator.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/make_param.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_plots.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_rejection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/mean_f_rms_f.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_wilson.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_absences.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pre_scale.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/ta_alpha_beta_calc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/basic_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/random_omit.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twmad_scale.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/sigmaa_estimation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/remove_outliers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_mean_f_rms_f.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_outlier.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/massage_twin_detwin_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_sigmaa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absence_likelihood.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absolute_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/thorough_outlier_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_massage_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absences.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/fa_estimation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pair_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_bayesian_estimator.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/data_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twin_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling creating build/bdist.linux-loongarch64/wheel/mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/pair_interaction.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_05.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_04.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction creating build/bdist.linux-loongarch64/wheel/mmtbx/ias copying build/lib/mmtbx/ias/tst_ias.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ias copying build/lib/mmtbx/ias/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ias copying build/lib/mmtbx/clashes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry_restraints creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/base_qm_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/reference.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/external.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/geo_file_parsing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/mopac_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/c_beta.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qm_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qi_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/afitt.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/orca_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints creating build/bdist.linux-loongarch64/wheel/mmtbx/disorder copying build/lib/mmtbx/disorder/backbone.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_backbone.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/analyze_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_analyze_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/check_cdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/sf4_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/altloc_weighting.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/LinkedResidues.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/testing_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_setup.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_base_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hpdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_hpdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/nucleotides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/histidines.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library creating build/bdist.linux-loongarch64/wheel/xcif creating build/bdist.linux-loongarch64/wheel/xcif/regression copying build/lib/xcif/regression/tst_non_strict_mode.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_api_compat.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_engine.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_parse_verify.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_quoted_string_delimiter.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_utf8.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_tokenize.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_roundtrip.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_parity.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_semicolon_field_strict.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_gil_release.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_string_interning.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_coordinates.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_bindings.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_sf.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_parse.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_memory.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression creating build/bdist.linux-loongarch64/wheel/xcif/benchmarks copying build/lib/xcif/benchmarks/run_benchmarks.py -> build/bdist.linux-loongarch64/wheel/./xcif/benchmarks copying build/lib/xcif/benchmarks/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif/benchmarks copying build/lib/xcif/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif copying build/lib/xcif/run_tests.py -> build/bdist.linux-loongarch64/wheel/./xcif creating build/bdist.linux-loongarch64/wheel/cootbx copying build/lib/cootbx/ligand_checklist.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/xmlrpc_server.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/hydrogens_button.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/view_refinement.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/simple_zoom_list.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/validation_lists.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/interactive_edit.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/watch_file.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cootbx creating build/bdist.linux-loongarch64/wheel/fable copying build/lib/fable/intrinsics.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/simple_compilation.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./fable creating build/bdist.linux-loongarch64/wheel/fable/command_line copying build/lib/fable/command_line/split.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/show_calls.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/insert_write_at_start_of_each_procedure.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/fem_include_search_paths.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/read.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/cout.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/tokenization.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_read.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/__init__.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/equivalence.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/read.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/utils.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_cout_compile.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_equivalence.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/run_tests.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_cout.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/cout.py -> build/bdist.linux-loongarch64/wheel/./fable creating build/bdist.linux-loongarch64/wheel/smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/refinement creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/site.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/hydrogens.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/all.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/rigid.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/fpfdp.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/all.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/adp.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_occupancies.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_disorder.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_same_group.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_rigid.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_direction.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/occupancy.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/origin_fixing_restraints.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/adp_restraints.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/least_squares.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement creating build/bdist.linux-loongarch64/wheel/smtbx/masks copying build/lib/smtbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/masks creating build/bdist.linux-loongarch64/wheel/smtbx/absolute_structure copying build/lib/smtbx/absolute_structure/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/absolute_structure creating build/bdist.linux-loongarch64/wheel/smtbx/command_line copying build/lib/smtbx/command_line/absolute_structure.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/anom_refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/masks.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/benchmark_refinement.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/development.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/regression creating build/bdist.linux-loongarch64/wheel/smtbx/regression/test_data copying build/lib/smtbx/regression/test_data/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression/test_data copying build/lib/smtbx/regression/tst_commandline_anomrefine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression copying build/lib/smtbx/regression/tst_commandline_refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression copying build/lib/smtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression creating build/bdist.linux-loongarch64/wheel/smtbx/stl copying build/lib/smtbx/stl/map.py -> build/bdist.linux-loongarch64/wheel/./smtbx/stl copying build/lib/smtbx/stl/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/stl copying build/lib/smtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./smtbx copying build/lib/smtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/ab_initio copying build/lib/smtbx/ab_initio/charge_flipping.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio copying build/lib/smtbx/ab_initio/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio creating build/bdist.linux-loongarch64/wheel/smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_charge_flipping.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests creating build/bdist.linux-loongarch64/wheel/smtbx/array_family copying build/lib/smtbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/array_family creating build/bdist.linux-loongarch64/wheel/smtbx/structure_factors copying build/lib/smtbx/structure_factors/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/structure_factors creating build/bdist.linux-loongarch64/wheel/smtbx/structure_factors/direct copying build/lib/smtbx/structure_factors/direct/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/structure_factors/direct copying build/lib/smtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/source_generators copying build/lib/smtbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./smtbx/source_generators copying build/lib/smtbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/source_generators copying build/lib/smtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/fast_linalg copying build/lib/fast_linalg/__init__.py -> build/bdist.linux-loongarch64/wheel/./fast_linalg creating build/bdist.linux-loongarch64/wheel/ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/tst.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/copy_files.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx creating build/bdist.linux-loongarch64/wheel/wxtbx copying build/lib/wxtbx/segmentedctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/mtz_dump.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/bitmaps.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/layout.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/reports copying build/lib/wxtbx/reports/pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/blast.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/info_panels.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/listeditor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/checklistctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/command_line copying build/lib/wxtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/loggraph.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_editor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/inspect_r_free_flags.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/plot_anomalous_scattering.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/xtriage.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/anomalous_differences_histogram.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/wxpython.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/show_file_info.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_statistics.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/windows.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/icons.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/pdb_editor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/anomalous_scattering.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/misc_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/metallicbutton.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/xtriage.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/browser.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/polygon.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/sequence_view.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/tables.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/wx4_compatibility.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/plots copying build/lib/wxtbx/plots/molprobity.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/emringer.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/monitor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/path_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/app.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice_multi.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/boolctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tribool.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tree.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floats.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/misc_ctrls.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floatctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/symop.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strings.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/numbers.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/space_group.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/ints.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/path.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/array_label.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/text_base.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/intctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/unit_cell.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/simple_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/symmetry_dialog.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/adp_statistics.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/process_control.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/errors.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/heavy_atoms.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/custom_restraints.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/qstat_view.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/ensemble_validation.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/polygon_db_viewer.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/xray copying build/lib/cctbx/xray/scatterer.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/target_functors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/targets copying build/lib/cctbx/xray/targets/r1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_r1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/observation_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/observations copying build/lib/cctbx/xray/observations/tst_observations.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/observations/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradient_flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_base.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/algorithm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/global_counters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_direct.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/misc.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors creating build/bdist.linux-loongarch64/wheel/cctbx/masks copying build/lib/cctbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/masks copying build/lib/cctbx/r_free_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/command_line copying build/lib/cctbx/command_line/structure_factor_timings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_scale.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/space_group_info.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cod_select_and_pickle.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cctbx_test_nightly.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/brehm_diederichs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_join.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/euclidean_model_matching.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/precession_view.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/version.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/segment_and_split_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/wavelength_units.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/auto_sharpen.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/find_reticular_twin_laws.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/diffuse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/eltbx.show_fp_fdp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/form_factor_query.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx copying build/lib/cctbx/sgtbx/sys_abs_equiv.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/sub_lattice_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/plane_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_pg_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/harker.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx/direct_space_asu creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/reference_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/rational_matrices_point_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/show_cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/bravais_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/literal_description.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_twin_laws.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/pointgroup_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/symbol_confidence.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx creating build/bdist.linux-loongarch64/wheel/cctbx/covariance copying build/lib/cctbx/covariance/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/covariance creating build/bdist.linux-loongarch64/wheel/cctbx/geometry copying build/lib/cctbx/geometry/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry creating build/bdist.linux-loongarch64/wheel/cctbx/maptbx copying build/lib/cctbx/maptbx/refine_scales_errors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/real_space_refinement_simple.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/resolution_from_map_and_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/box.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx creating build/bdist.linux-loongarch64/wheel/cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_qmap_02.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_example.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/compute_tables.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/bcr.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/qmap.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_two_atoms.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_adp_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/tst_mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_asymmetric_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_real_space_refinement_simple.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/fsc_curve.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_docking.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_target_and_gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_refinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_curves.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/segment_and_split_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_ccp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_bcr.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/auto_sharpen.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/refine_sharpening.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mem.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/map_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_loft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_peak_volume_estimate.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx creating build/bdist.linux-loongarch64/wheel/cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_asu_clusters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_site_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_krivy_gruber.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_french_wilson.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wavelength_units.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_merge_equivalents.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_prepare_map_for_docking.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_show_cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_web_change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization_failure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_create_models_or_maps.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_double_step_filtration.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints_cartesian.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_fast_gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_f_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pair_asu_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_target_functors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications_rm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_coordination_sequences.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_expand_to_p1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_twin_target.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_statistics_graphs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sf_low_res_accuracy.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_find_best_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_data_manipulation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity_allsym.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sphericity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sampled_model_density.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_amplitude_normalisation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_is_periodic.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_harker.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_diffuse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wilson_plot.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pointgroup_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_close_packing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_loc_res.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_pickling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_r_free_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_denominators.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fast_nv1995.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_aniso_restraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_math_module.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_triplet_generator.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_lookup_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reciprocal_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fcalc_fft_stability.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_box.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_emma.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_niggli_reduction_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_scaling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_refine_xray_curvs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_fft_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grouped_data.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression creating build/bdist.linux-loongarch64/wheel/cctbx/web copying build/lib/cctbx/web/dispatcher.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web creating build/bdist.linux-loongarch64/wheel/cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jvx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/guide_to_notation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_index.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/web_links.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/change_setting.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/iotbx_cif_validate.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/frac_cart.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/explore_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/libtbx_help.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/change_hand.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/browse_settings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/shelx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors_pdb.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/emma.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/multiple_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/all_axes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/wyckoff.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/cgi_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/replay.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/io_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web creating build/bdist.linux-loongarch64/wheel/cctbx/development copying build/lib/cctbx/development/debug_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/approx_amplitude_vs_resolution.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/make_cns_input.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_epsilon.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/make_settings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/fmt_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/github.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/electron_density_sampling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/create_models_or_maps.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/cns_density_modification.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/random_structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_hl.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/direct_or_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx76.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/space_group_option_parser.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/structure_factor_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/translation_search.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/macro_mol copying build/lib/cctbx/macro_mol/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/macro_mol copying build/lib/cctbx/macro_mol/rotation_parameters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/macro_mol creating build/bdist.linux-loongarch64/wheel/cctbx/omz copying build/lib/cctbx/omz/eval_iso_vs_refined.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_bfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_select_and_pickle.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/bfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/pdb_dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tardy_adaptor.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cif_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz creating build/bdist.linux-loongarch64/wheel/cctbx/examples copying build/lib/cctbx/examples/space_group_matrices.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/list_non_principal_continuous_shifts.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/adp_symmetry_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_minimizers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/hirshfeld_test.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/sub_group_graph.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_puckers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples creating build/bdist.linux-loongarch64/wheel/cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_derivatives_4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/fft_map_electron_density_around_atom.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_transform.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/view_fft_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_consistency_checks.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/neutron_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/f_model_example.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_common_sets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/change_hand_p31.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_primitive_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_partial_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/lebedev_2005_perturbation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_refinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/analyze_adp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_space_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_f_calc.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_distances_using_cpp_objects.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/symops_530.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/all_axes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/convert_ccp4_symop_lib.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/map_skewness.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/reduced_cell_two_folds.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/location_part.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/quartz_structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/space_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/steve_collins.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/maximum_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/getting_started.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples creating build/bdist.linux-loongarch64/wheel/cctbx/examples/merging copying build/lib/cctbx/examples/merging/test1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_levenberg_sparse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_utilities.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/sigma_correction.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/task4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging creating build/bdist.linux-loongarch64/wheel/cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/join.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/scale.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/show_results.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/tst_permutations.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_cc_half.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_subset.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/tst_structure_factor_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/euclidean_model_matching.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/adptbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/dmtbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx copying build/lib/cctbx/eltbx/attenuation_coefficient.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/e_scattering.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/henke.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/van_der_waals_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/e_scattering_plots.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_approx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_io.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_kissel.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/rez_rez_grant.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/combine_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_cross_validation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_section61_io.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/format_gaussian_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/hydrogen_plots.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/xray_scattering/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/read_custom_scattering_dict.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/chemical_elements.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/fp_fdp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/sasaki.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/icsd_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/wavelengths.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/gaussian_fit.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/tiny_pse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/covalent_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/neutron.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/formula.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/run_examples.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/math_module.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/french_wilson.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/neutron copying build/lib/cctbx/neutron/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/neutron copying build/lib/cctbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/miller copying build/lib/cctbx/miller/tst_reindexing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/reindexing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/tst_map_to_asu_isym.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/display.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/anharmonic.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/symmetry_search.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/crystal copying build/lib/cctbx/crystal/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/direct_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/super_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/coordination_sequences.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_super_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/close_packing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/reindex.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/find_best_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal creating build/bdist.linux-loongarch64/wheel/cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/energies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints creating build/bdist.linux-loongarch64/wheel/cctbx/array_family copying build/lib/cctbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./cctbx/array_family copying build/lib/cctbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/array_family creating build/bdist.linux-loongarch64/wheel/cctbx/source_generators creating build/bdist.linux-loongarch64/wheel/cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators copying build/lib/cctbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators creating build/bdist.linux-loongarch64/wheel/cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/lbfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/linking_class.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/standard_cif_links.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/auto_linking_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_motif.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/base_geometry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/energies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_proxy_registry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_angle_derivs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/distance_least_squares.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/multipolar.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/uctbx copying build/lib/cctbx/uctbx/reduction_base.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx creating build/bdist.linux-loongarch64/wheel/cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/determine_unit_cell/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/krivy_gruber_1976.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973_table_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx creating build/bdist.linux-loongarch64/wheel/cctbx/merging copying build/lib/cctbx/merging/brehm_diederichs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/merging copying build/lib/cctbx/merging/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/merging copying build/lib/cctbx/crystal_orientation.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/iotbx copying build/lib/iotbx/map_model_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/fullprof copying build/lib/iotbx/fullprof/write_pcr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/read_pcr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/ranges.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/cif copying build/lib/iotbx/cif/cod_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/model.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraints.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/builders.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/geometry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/citations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/errors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraint_file_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/validation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/crystal_symmetry_from_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/mtz copying build/lib/iotbx/mtz/tst_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_miller_dict.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_dano.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/extract_from_symmetry_lib.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/crystal_symmetry_from_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/phases.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/dsn6 copying build/lib/iotbx/dsn6/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dsn6 copying build/lib/iotbx/dsn6/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dsn6 copying build/lib/iotbx/csv_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/scalepack copying build/lib/iotbx/scalepack/merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/no_merge_original_index.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/space_group_dictionary.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_no_merge_original_index.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/option_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/command_line copying build/lib/iotbx/command_line/crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_distances.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.sdb_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_accumulation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/sort_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_diff.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_miller_arrays.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/blast_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/flip_symmetric_amino_acids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_comparison.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.join_fragment_files.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.insert_scale_records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtrix_reconstruction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/build_phil_cache.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/get_pubmed_citation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cbf_read.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_systematic_absences.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/unique_with_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_split_models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_fasta.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dano_as_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/csv_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/export_scalepack_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_show_connectivity.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif_as_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/biomt_reconstruction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/emma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dtrek.to_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_get_citation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/explore_metric_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_add_conformations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_as_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/french_wilson.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.dump_as_python.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.b_factor_stats.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_completion_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz.dump.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/simple_map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/patterson_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/poscar_as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.validate.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/symmetry_search.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reindex.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_converter.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/xplor.map.show_summary.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.reflection_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/distance_least_squares.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/effective_resolution.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.print_sequence.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/detector_image_as_png.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line creating build/bdist.linux-loongarch64/wheel/iotbx/data_manager copying build/lib/iotbx/data_manager/sequence.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/model.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/real_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/ncs_spec.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/common.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/miller_array.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/restraint.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/table_one.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/regression copying build/lib/iotbx/regression/tst_all_chain_ids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_wrapping.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_fetch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_simple_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cli_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_show_systematic_absences.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_link_records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_miller_sort_asu.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_bioinformatics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_extract_xtal_data.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_poscar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reindex.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_as_pdb_1atom.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_csv_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_restraints_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_input.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_generate_n_char_string.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_4.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_inputs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_xray_scale.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression creating build/bdist.linux-loongarch64/wheel/iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_without_validation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_user_selections.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/tst_simple_map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_cells.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_segids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_fasta.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_export_scalepack_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_multimodel.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_atom_selections_10k.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_sort_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_pdb_v3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_add_conformations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_id_str.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_wildcard.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mrc_io.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_patterson.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_call_consistency.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_4.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_group_rounding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_examples.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phases.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mtz_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_altlocs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_plots.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_copy_select.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_selected_hierarchy_flip.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/nucleic_acid_codes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_atom_sort.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/crystal_symmetry_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection_string.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/fetch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rcsb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/amino_acid_codes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_rna_dna_atom_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_name_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/experiment_type.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_name_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/mmcif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hybrid_36.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_aa_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_290_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/secondary_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/aa_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/cryst1_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/web_service_api.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/download.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rna_dna_detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/misc_records_output.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_2_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_rna_dna_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_tls.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_3_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdbe.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdb_v3_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb creating build/bdist.linux-loongarch64/wheel/iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/tst_remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/tst_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb creating build/bdist.linux-loongarch64/wheel/iotbx/xds copying build/lib/iotbx/xds/xds_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/gain_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xds_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xparm.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/integrate_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/crystal_symmetry_from_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/spot_xds.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/read_ascii.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/geometry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/blank_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/correction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds creating build/bdist.linux-loongarch64/wheel/iotbx/detectors copying build/lib/iotbx/detectors/raxis_nonsquare.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_py_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_detectors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/generic_detector.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/edf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cspad_detector_formats.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/image_from_http_request.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxis.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxisbase.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/bruker.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/npy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/active_area_filter.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/url_support.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/macscience.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_raxis2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/detectorbase.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/beam_center_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/noir.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_adsc.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/mar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_debug_write.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/saturn.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors creating build/bdist.linux-loongarch64/wheel/iotbx/detectors/context copying build/lib/iotbx/detectors/context/spot_xy_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/config_detector.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/camera_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation_max_iv_trial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/adsc_module.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors creating build/bdist.linux-loongarch64/wheel/iotbx/detectors/util copying build/lib/iotbx/detectors/util/filters.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/util/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/tst_cbf_comp_read_meth.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/dtrek.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/hamamatsu.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_slice.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/marIP.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_mar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/map_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/map_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/tables.py -> build/bdist.linux-loongarch64/wheel/./iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/PrettyPrint creating build/bdist.linux-loongarch64/wheel/iotbx/kriber copying build/lib/iotbx/kriber/strudat.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/tst_strudat.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber creating build/bdist.linux-loongarch64/wheel/iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/simple_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/xplor copying build/lib/iotbx/xplor/tst_xplormap.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/crystal_symmetry_from_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/mtrix_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/examples copying build/lib/iotbx/examples/libtbx_phil_examples.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/prepare_model_for_rsr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_shake.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/direct_methods_light.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_split_chains.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdbx_mmcif_tutorial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/tst_mtz_free_flipper.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_convert_free_to_work.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_free_flipper.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_symmetry_copies.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples creating build/bdist.linux-loongarch64/wheel/iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_to_map_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples creating build/bdist.linux-loongarch64/wheel/iotbx/dtrek copying build/lib/iotbx/dtrek/reflnlist_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/crystal_symmetry_from_ref.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/dtrek_symmetry_dict.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/extract_xtal_data.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pdb_info.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/homologues.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/xmlbuild.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ncbi_blast_xml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pubmed.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/alignment_as_hsearch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/local_blast.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics creating build/bdist.linux-loongarch64/wheel/iotbx/ncs copying build/lib/iotbx/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ncs copying build/lib/iotbx/wildcard.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_sdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/index_fobs_sigma_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/miller_array.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/reflection_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/tst_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/space_group_symbols.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/pdb_remarks.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/pymol.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/builders.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/logfiles.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/format.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/cif_mtz_data_labels.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/cli_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/programs copying build/lib/iotbx/programs/unique_with_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs creating build/bdist.linux-loongarch64/wheel/iotbx/solve copying build/lib/iotbx/solve/crystal_symmetry_from_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/solve/fpfm_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/solve/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/shelx copying build/lib/iotbx/shelx/parsers.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/hklf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_lex_parse_build.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tokens.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fcf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_hklf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_fvar_encoding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/lexer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/write_ins.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/errors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/crystal_symmetry_from_ins.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fvar_encoding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/builders_depending_on_smtbx.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/mrcfile copying build/lib/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mrcfile copying build/lib/iotbx/mrcfile/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mrcfile copying build/lib/iotbx/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/data_plots.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/poscar.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_converter.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/gui_tools copying build/lib/iotbx/gui_tools/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/cif_conversions.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/import_data_and_flags.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/reflections.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/self_match.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/sample.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/generate_all.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/applications copying build/lib/spotfinder/applications/practical_heuristics.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/stats_distl.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/image_viewer.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications creating build/bdist.linux-loongarch64/wheel/spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice2.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/spotreporter.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx creating build/bdist.linux-loongarch64/wheel/spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_run3.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_phil.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/correction_vector_plot.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/wrappers.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/signal_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications creating build/bdist.linux-loongarch64/wheel/spotfinder/servers copying build/lib/spotfinder/servers/specific_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/general_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/thin_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/bcsb_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/multipart_encoder.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_bcsb.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/pilatus_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/adsc_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_client_push.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_utils.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_dials.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers creating build/bdist.linux-loongarch64/wheel/spotfinder/command_line copying build/lib/spotfinder/command_line/thin_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/image_viewer.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/find_active_area.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/sweep_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/signal_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/exception.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/dxtbx_toolbox creating build/bdist.linux-loongarch64/wheel/spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/close_spots_detail.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/core_toolbox creating build/bdist.linux-loongarch64/wheel/spotfinder/diffraction copying build/lib/spotfinder/diffraction/imagefiles.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/geometry.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/math_support copying build/lib/spotfinder/math_support/sphere_formulae.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/math_support copying build/lib/spotfinder/math_support/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/math_support creating build/bdist.linux-loongarch64/wheel/spotfinder/array_family copying build/lib/spotfinder/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/array_family copying build/lib/spotfinder/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/array_family copying build/lib/spotfinder/run_tests.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/apps copying build/lib/rstbx/apps/spot_markup.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps creating build/bdist.linux-loongarch64/wheel/rstbx/apps/stills copying build/lib/rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/util.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/simple_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/stills_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/dual_resolution_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps copying build/lib/rstbx/apps/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps copying build/lib/rstbx/apps/slip_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps creating build/bdist.linux-loongarch64/wheel/rstbx/simulation copying build/lib/rstbx/simulation/constants.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_pdf.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/tst_xfel1_simple.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_utils.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation creating build/bdist.linux-loongarch64/wheel/rstbx/phil copying build/lib/rstbx/phil/scope.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/phil_preferences.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/preferences.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil creating build/bdist.linux-loongarch64/wheel/rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/fit_distribution.py -> build/bdist.linux-loongarch64/wheel/./rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/outlier_spots creating build/bdist.linux-loongarch64/wheel/rstbx/command_line copying build/lib/rstbx/command_line/example_viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.explore_completeness.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.create.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/slip_viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.solver.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.wx_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line creating build/bdist.linux-loongarch64/wheel/rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/ring_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/pyslip.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/tile_generation.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/score_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_viewer_image_factory.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/uc_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/calibration_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer creating build/bdist.linux-loongarch64/wheel/rstbx/detectors copying build/lib/rstbx/detectors/silicon.py -> build/bdist.linux-loongarch64/wheel/./rstbx/detectors copying build/lib/rstbx/detectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/detectors creating build/bdist.linux-loongarch64/wheel/rstbx/symmetry copying build/lib/rstbx/symmetry/sgtbx_adaptor.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry creating build/bdist.linux-loongarch64/wheel/rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/parameter_reduction.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/g_gradients.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry copying build/lib/rstbx/symmetry/subgroup.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry creating build/bdist.linux-loongarch64/wheel/rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_validate.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2a.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions_idx.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/compare_mosflm_xds.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx creating build/bdist.linux-loongarch64/wheel/rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/detector.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/instrument_specifics.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/tst_detector_model.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/ersatz_misset.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx creating build/bdist.linux-loongarch64/wheel/rstbx/dps_core copying build/lib/rstbx/dps_core/cell_assessment.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/tst_iotbx_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/basis_choice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/lepage.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/zuoreduction.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/constrainment.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/sampling.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core creating build/bdist.linux-loongarch64/wheel/rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_procedure.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/lattice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/nearest_neighbor.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/force_cell.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/basis_choice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/tools.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/test_dps.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_detection.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/sampling.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api creating build/bdist.linux-loongarch64/wheel/rstbx/indexing copying build/lib/rstbx/indexing/tst_auto_monoscan.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/do_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/tst_dataset1.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing creating build/bdist.linux-loongarch64/wheel/rstbx/new_horizons copying build/lib/rstbx/new_horizons/index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/speckfinder.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/stats_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/spot_shape.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/pixel_spread.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/oscillation_shots.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons creating build/bdist.linux-loongarch64/wheel/rstbx/diffraction creating build/bdist.linux-loongarch64/wheel/rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/tst_ewald_sphere.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_partial_derivatives.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_predict.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/simage copying build/lib/rstbx/simage/run_spotfinder.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/refine_uc_cr.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/integrate_crude.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/tst.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/run_labelit_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/explore_completeness.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/create.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/solver.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/wx_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage creating build/bdist.linux-loongarch64/wheel/rstbx/viewer copying build/lib/rstbx/viewer/results_base.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/dataset.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/processing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/tst.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/drivers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/pixels3d.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/controls.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_wrap.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/indexing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer creating build/bdist.linux-loongarch64/wheel/rstbx/array_family copying build/lib/rstbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./rstbx/array_family copying build/lib/rstbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/array_family copying build/lib/rstbx/utils.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/tst_coordinate_frame_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx creating build/bdist.linux-loongarch64/wheel/rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/tst_sublattice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/change_basis.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support creating build/bdist.linux-loongarch64/wheel/rstbx/dials_core copying build/lib/rstbx/dials_core/integration_core.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dials_core copying build/lib/rstbx/dials_core/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dials_core copying build/lib/rstbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/bandpass copying build/lib/rstbx/bandpass/simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bandpass copying build/lib/rstbx/bandpass/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bandpass creating build/bdist.linux-loongarch64/wheel/cma_es copying build/lib/cma_es/cma_es_interface.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/tst_cma_es.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/__init__.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cma_es creating build/bdist.linux-loongarch64/wheel/cbflib_adaptbx creating build/bdist.linux-loongarch64/wheel/cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/dump.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/copy_files.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/exercise_compression.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx creating build/bdist.linux-loongarch64/wheel/libtbx copying build/lib/libtbx/containers.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pyplot.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_unique_dirs.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_word_index_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/assert_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_fully_buffered_timeout.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/cpp_function_name.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/program_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_python_code_parsing.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/phil copying build/lib/libtbx/phil/interface.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tokenizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/command_line.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_experimental.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/experimental.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/gui_objects.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/parser.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_tokenizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_interface.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/tst_easy_mp_multicore.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/clear_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/console_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/start_print_trace.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_representation.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_citations.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/complex_math.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/runtime_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_topological_sort.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/word_index_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/dlite.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/option_parser.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/thread_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/command_line copying build/lib/libtbx/command_line/show_module_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_binary_bundle.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/env_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_env.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/prime_factors_of.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_sys_executable.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_host_and_user.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clear_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_sphinx_html.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_available_slots.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_not_show_diff.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_include_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_options.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_dist_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/add_docstrings_with_ai.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/printenv.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_but_no_repr.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/line_count.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_process.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/extract_code_from_txt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/nequal.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_python.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/wait_for_file.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_commands.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_tree.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/path_utility.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numpy_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/check_libcpp.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/parallel_simple.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/cctbx_chunk.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_contains_strings.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_repository_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/scons.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_mac_app.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_source_files_sorted_by_size.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_full_command_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_tests_parallel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_windows_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/epydoc_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_number_of_processors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_unzipsfx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remote_processing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sphinx_build.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_pdb_mmcif_problems.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_ext.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_reserved_names.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/raise_exception_for_testing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_bin_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_untested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bundle_as_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_selfx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_pythonpath.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/resource_monitor_plot.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_date_and_time.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_dist.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_in_repositories.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_line_count.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_all_on_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/py_compile_all.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/analyse_code_comments.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install_conda.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clean_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_under_build.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/easy_qsub.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/help.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/ipython_shell_start.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_install_script_bat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_ends_with.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/git_avoid_merges.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_lib_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_old_style_classes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/reindent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_pickled_function.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_modules.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports_crude.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_environ_usage.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_qstat_counts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_variable_names.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/dtrace.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/any2unix.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numeric_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/seconds_since_the_epoch.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line creating build/bdist.linux-loongarch64/wheel/libtbx/sphinx copying build/lib/libtbx/sphinx/pubmed.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/python_string.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx creating build/bdist.linux-loongarch64/wheel/libtbx/scheduling copying build/lib/libtbx/scheduling/mp_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/job_scheduler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/shared_resource.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/result.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/thread_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/socket_queue.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/process_pool.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/file_queue.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/stacktrace.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/mainthread.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/parallel_for.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/philgen.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/cluster_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/cli.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_runtime_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/subprocess_with_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/object_oriented_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/bundle copying build/lib/libtbx/bundle/copy_all.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_runtime_sources.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_bat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_build_libtbx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_csh.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/easy_mp.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/program_utils copying build/lib/libtbx/program_utils/result.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/statistics_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/tst_containers.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/introspection.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/development copying build/lib/libtbx/development/timers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/xcode_build_phase.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/except_Exception.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/xmlrpc_server_example.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/topological_sort.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_math_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/env_config.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/server copying build/lib/libtbx/server/StartServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/SocketServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileSocket.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileClient.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/math_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pkg_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/forward_compatibility.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/crossmingw.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/find_reference_cycles.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_xmlrpc_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/configure.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/file_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/clusterTests.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_thread_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/python_code_parsing.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/smart_open.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_pickle.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/callbacks.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/version.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling_helpers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/sge_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/tst.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/pbs_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/remote.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/generic.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/lsf.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils creating build/bdist.linux-loongarch64/wheel/libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/transfer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/util.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/status.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/polling.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/submission.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/errors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/looping.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/communication.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/citations.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/test_utils copying build/lib/libtbx/test_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/test_utils/parallel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/tst_mahalanobis.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_profile.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pyframe.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/auto_build copying build/lib/libtbx/auto_build/write_gui_dispatcher_include.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/regenerate_module_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_base_packages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/plus_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/installer_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_app.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/make_bundle.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_pkg.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/package_defs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_conda.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/setup_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_distribution.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/rpath.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build creating build/bdist.linux-loongarch64/wheel/libtbx/langchain copying build/lib/libtbx/langchain/phenix_knowledge.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/hypothesis_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_registry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_inspector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/template_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rate_limit_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/nl_to_phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/format_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/dry_run_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/docs_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_engine.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_history.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/pattern_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_log.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/advice_preprocessor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_nodes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rules_selector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phenix_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metric_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/thinking_agent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_logic_doc.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_safety_docs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/intent_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/sanity_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/config_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/contract.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/gate_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metrics_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/transport.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/log_section_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/api_client.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phil_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/tst_agent_enhancements.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/planner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/structure_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/failure_diagnoser.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/yaml_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/kb_tags.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_formatter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_metadata.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/best_files_tracker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/display_data_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/strategy_memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/placement_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/plan_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/perceive_checks.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_postprocessor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/core_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/mtz_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/phenix_refine.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation copying build/lib/libtbx/langchain/validation/registry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/validation creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/run_build_db.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/text_processing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/query.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/run_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/yaml_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/thinking_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts_hybrid.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/program_registration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/explanation_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/summary_display.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/phenix_programs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_template_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/api_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/metric_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/kb_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/html_report_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/examples copying build/lib/libtbx/langchain/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/examples creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/core copying build/lib/libtbx/langchain/core/llm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/types.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/strategies creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/agent_session_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/state_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/summarizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/log_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/document_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/retriever.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/vector_store.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/run_inspect_db.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain copying build/lib/libtbx/langchain/run_query_docs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_contract_compliance.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase4_history_flags.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v112_13_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_directives.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase5_error_classification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_scenario_tracer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_action_item_1.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/integration/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/test_api_keys.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_intent_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dry_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_new_programs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_backward_compat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_integration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_structure_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase8_command_building.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_old_client_compat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_state_serialization.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_registration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_n_bugs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/audit_phase_rename.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_fix.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_command_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phaser_multimodel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_summary.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_api_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_audit_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_transport.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_decision_flow.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directives_integration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metric_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorization.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sanity_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_copies_tracking.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_file_overrides.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_docs_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_strategy_memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_advice_preprocessing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autosol_bugs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metrics_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_codes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_langchain_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_best_files_tracker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_display_data_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase0_static_audit.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/run_all_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_config.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_defense.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_summary_display.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_gate_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_system.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validation_history.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_log_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fix_verification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_history_analysis.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/analyze_tutorial_runs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_pattern_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_agent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_bug5.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_shared_code_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_explanation_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/tst_easy_mp_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_object_oriented_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/load_env.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/log.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_scheduling.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_easy_pickle.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_easy_mp.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/str_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/code_analysis.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_binary_search.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/metric_prefixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/wingide.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_program_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/binary_search.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_find_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/xmlrpc_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/path.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/mpi4py.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/simplexml.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_retry.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/progress.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/objgraph.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/table_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/resource_monitor.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_str_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_dlite.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/cluster.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_add_docstrings_with_ai.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/try_hello_world_c.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/simtbx creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg copying build/lib/simtbx/diffBragg/mpi_logger.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/psf.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/prep_stage2_input.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/base_refiner.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/stage_two_refiner.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/parameters.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/geometry.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/device.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/attr_list.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/ensemble_refine_launcher.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/parameter_errors.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_ensemble_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/phil.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_io.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/stage_two_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg creating build/bdist.linux-loongarch64/wheel/simtbx/modeling copying build/lib/simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/forward_models.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/predictions.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling creating build/bdist.linux-loongarch64/wheel/simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_threads.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_init.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_beam.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gauss_argchk.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_multisource_background.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_input.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_crystal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/anisotropic_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/sim_data.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg creating build/bdist.linux-loongarch64/wheel/simtbx/gpu copying build/lib/simtbx/gpu/tst_gpu_multisource_background.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_shoeboxes.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_exafel_api.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu creating build/bdist.linux-loongarch64/wheel/simtbx/kokkos copying build/lib/simtbx/kokkos/tst_kokkos_lib.py -> build/bdist.linux-loongarch64/wheel/./simtbx/kokkos copying build/lib/simtbx/kokkos/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/kokkos copying build/lib/simtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx copying build/lib/simtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./simtbx creating build/bdist.linux-loongarch64/wheel/simtbx/pixel copying build/lib/simtbx/pixel/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/pixel creating build/bdist.linux-loongarch64/wheel/omptbx copying build/lib/omptbx/tst.py -> build/bdist.linux-loongarch64/wheel/./omptbx copying build/lib/omptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./omptbx creating build/bdist.linux-loongarch64/wheel/gltbx copying build/lib/gltbx/gl_managed.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_functions_bpl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/images.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_cube.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_motion_on_tab.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewers_images.py -> build/bdist.linux-loongarch64/wheel/./gltbx creating build/bdist.linux-loongarch64/wheel/gltbx/command_line copying build/lib/gltbx/command_line/try_imports.py -> build/bdist.linux-loongarch64/wheel/./gltbx/command_line copying build/lib/gltbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./gltbx/command_line copying build/lib/gltbx/wx_scene.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/viewer_utils.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/util.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_leapmotion.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/quadrics.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_example.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_ellipsoids.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_fonts_ucs_cpp.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/extract_opengl_specs.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/gl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_fonts.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/fonts.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/glu.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_defines_bpl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_viewer_utils.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_ellipsoids_test.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./gltbx creating build/bdist.linux-loongarch64/wheel/serialtbx creating build/bdist.linux-loongarch64/wheel/serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/util.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/max_like.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation creating build/bdist.linux-loongarch64/wheel/serialtbx/detector copying build/lib/serialtbx/detector/jungfrau.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/rayonix.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/cspad.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/xtc.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector creating build/bdist.linux-loongarch64/wheel/serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/generic_detector.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/cspad_detector.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/metrology.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx creating build/bdist.linux-loongarch64/wheel/serialtbx/util copying build/lib/serialtbx/util/construct_frame.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/energy_scan_notch_finder.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/time.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util creating build/bdist.linux-loongarch64/wheel/scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/serialization copying build/lib/scitbx/serialization/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/serialization copying build/lib/scitbx/cubicle_neighbors.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/r3_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree copying build/lib/scitbx/suffixtree/single.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/tst_single.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/test creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree creating build/bdist.linux-loongarch64/wheel/scitbx/command_line copying build/lib/scitbx/command_line/show_sizes.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/apply_tapenade_hints.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/generate_error_h.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/histogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/show_exp_times.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/unicode_examples.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/smoothing.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/regular_grid_on_unit_sphere.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/linalg copying build/lib/scitbx/linalg/svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/eigensystem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/linalg/boost_python copying build/lib/scitbx/linalg/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/boost_python copying build/lib/scitbx/linalg/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_dsyev.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_cholesky.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_matrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_eigensystem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/householder.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/stdlib copying build/lib/scitbx/stdlib/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stdlib creating build/bdist.linux-loongarch64/wheel/scitbx/misc copying build/lib/scitbx/misc/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/misc copying build/lib/scitbx/differential_evolution.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/restraints.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/line_search copying build/lib/scitbx/line_search/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/line_search copying build/lib/scitbx/minimizers.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/matrix copying build/lib/scitbx/matrix/row_echelon.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix copying build/lib/scitbx/matrix/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix creating build/bdist.linux-loongarch64/wheel/scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_row_echelon.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_householder.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/cross_entropy.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/examples copying build/lib/scitbx/examples/minimizer_comparisons.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/immoptibox_ports.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_recipe.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_grid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/chebyshev_lsq_example.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_array_loops.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/integrating_a_weighted_sinc_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/principal_axes_of_inertia.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/functions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples creating build/bdist.linux-loongarch64/wheel/scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/silver.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/rigid_body_refinement_core.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples creating build/bdist.linux-loongarch64/wheel/scitbx/iso_surface copying build/lib/scitbx/iso_surface/tst_iso_surface.py -> build/bdist.linux-loongarch64/wheel/./scitbx/iso_surface copying build/lib/scitbx/iso_surface/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/iso_surface copying build/lib/scitbx/simplex.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/error copying build/lib/scitbx/error/tst_error.py -> build/bdist.linux-loongarch64/wheel/./scitbx/error copying build/lib/scitbx/error/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/error creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/tests creating build/bdist.linux-loongarch64/wheel/scitbx/sparse creating build/bdist.linux-loongarch64/wheel/scitbx/sparse/boost_python copying build/lib/scitbx/sparse/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/boost_python copying build/lib/scitbx/sparse/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse creating build/bdist.linux-loongarch64/wheel/scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_sparse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_lu_factorization.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests creating build/bdist.linux-loongarch64/wheel/scitbx/random creating build/bdist.linux-loongarch64/wheel/scitbx/random/boost_python copying build/lib/scitbx/random/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/boost_python copying build/lib/scitbx/random/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random creating build/bdist.linux-loongarch64/wheel/scitbx/random/tests copying build/lib/scitbx/random/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/tests copying build/lib/scitbx/random/tests/tst_random.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/tests copying build/lib/scitbx/direct_search_simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/lbfgsb.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_func_free_line_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs creating build/bdist.linux-loongarch64/wheel/scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/twisted_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/run.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/tst_curvatures.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_lbfgs_fem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs creating build/bdist.linux-loongarch64/wheel/scitbx/wigner copying build/lib/scitbx/wigner/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/wigner copying build/lib/scitbx/wigner/tst_wigner3j.py -> build/bdist.linux-loongarch64/wheel/./scitbx/wigner creating build/bdist.linux-loongarch64/wheel/scitbx/stl copying build/lib/scitbx/stl/tst_set.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/vector.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_map.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/set.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/map.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_vector.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl creating build/bdist.linux-loongarch64/wheel/scitbx/boost_python copying build/lib/scitbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/boost_python creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_molecules.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_molecules.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_singular.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_simulation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_free_motion.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/body_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/spatial_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/make_bundles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/wx_tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_energy_plots.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/dtmin copying build/lib/scitbx/dtmin/realsymmetricpseudoinverse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/twisted_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/bounds.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin creating build/bdist.linux-loongarch64/wheel/scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_booth.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/refinebase.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/min_logging.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/optional.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/compulsory.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/auxiliary.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/reparams.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/minimizer.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/genetic_algorithm_with_mp.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/fftpack.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/math copying build/lib/scitbx/math/so3_lie_algebra.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/curve_fitting.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/incremental_SO3_sampling.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/sphere_sphere_intersection.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_undirected_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/undirected_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/distributions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike_mom.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/cubic_spline.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/zernike_align_fft.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/superpose.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_bessel_zeros.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_2d_zernike.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/dev copying build/lib/scitbx/math/dev/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/dev copying build/lib/scitbx/math/clustering.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/scale_curves.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/spe.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/chebyshev_lsq_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/lefebvre.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_240_21.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_100_13.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_quadratic_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/boost_python copying build/lib/scitbx/math/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/boost_python copying build/lib/scitbx/math/tst_multivariate_moments.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900_ylm.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/multiple_superposition.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gumbel.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/besselk.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/sieve_of_eratosthenes.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/periodogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/breakpoint.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/euler_angles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_so3_lie_algebra.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_peak.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/farey.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/minimum_covering_ellipsoid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/erf copying build/lib/scitbx/math/erf/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/erf copying build/lib/scitbx/math/fliege_mayer_400.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/tests copying build/lib/scitbx/math/tests/tst_periodogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_euler_angles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_curve_fitting.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_similarity_indices.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_r3_rotation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_g_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_resample.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_line_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_math.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_angle_derivative.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_tetrahedron.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_exp_functions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_weighted_correlation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_halton.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_bessel.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_superpose.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_peak.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_orthonormal_basis.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_quadrature.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gcd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_cubic_equation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_dmatrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_quadratic_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_clustering.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/minpack.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/slatec copying build/lib/scitbx/slatec/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/slatec creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns_solving.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/benchmarks copying build/lib/scitbx/lstbx/benchmarks/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/benchmarks creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/tst_normal_equations.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/test_problems.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests creating build/bdist.linux-loongarch64/wheel/scitbx/array_family copying build/lib/scitbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/regression_test.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_smart_selection.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/accessors copying build/lib/scitbx/array_family/accessors/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/accessors copying build/lib/scitbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/detail copying build/lib/scitbx/array_family/detail/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/detail copying build/lib/scitbx/array_family/shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family copying build/lib/scitbx/golden_section_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/source_generators copying build/lib/scitbx/source_generators/lbfgs_fem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators creating build/bdist.linux-loongarch64/wheel/scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_apply.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_algebras.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_functors.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_reductions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/operator_functor_info.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_all.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_std_imports.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators creating build/bdist.linux-loongarch64/wheel/scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree_find_paths.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity_matrix_symbolic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tardy_tree.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_rigidity.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/test_cases_tardy_pdb.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph creating build/bdist.linux-loongarch64/wheel/scitbx/python_utils copying build/lib/scitbx/python_utils/tst_random_transform.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/command_line.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/robust_statistics.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/signal_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_robust.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/graph_tools.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/random_transform.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/misc.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/dicts.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graphics_utils creating build/bdist.linux-loongarch64/wheel/scitbx/tests copying build/lib/scitbx/tests/tst_r3_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_smoothing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/differential_evolution.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/simplex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/direct_search_simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_cubicle_neighbors.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/golden_section_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_minimizer_lbfgs_general.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests creating build/bdist.linux-loongarch64/wheel/qttbx creating build/bdist.linux-loongarch64/wheel/qttbx/viewers copying build/lib/qttbx/viewers/chimerax.py -> build/bdist.linux-loongarch64/wheel/./qttbx/viewers copying build/lib/qttbx/viewers/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/viewers copying build/lib/qttbx/phil.py -> build/bdist.linux-loongarch64/wheel/./qttbx copying build/lib/qttbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx creating build/bdist.linux-loongarch64/wheel/fftw3tbx copying build/lib/fftw3tbx/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx copying build/lib/fftw3tbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx copying build/lib/fftw3tbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx running install_egg_info Copying cctbx.egg-info to build/bdist.linux-loongarch64/wheel/./cctbx-2023.12.egg-info running install_scripts creating build/bdist.linux-loongarch64/wheel/cctbx-2023.12.dist-info/WHEEL creating '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/.tmp-bw2oelbc/cctbx-2023.12-py3-none-any.whl' and adding 'build/bdist.linux-loongarch64/wheel' to it adding 'annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/run_tests.py' adding 'annlib_adaptbx/annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/annlib_adaptbx/sample.py' adding 'annlib_adaptbx/annlib_adaptbx/self_match.py' adding 'annlib_adaptbx/source_generators/__init__.py' adding 'annlib_adaptbx/source_generators/generate_all.py' adding 'boost/__init__.py' adding 'boost/optional.py' adding 'boost/python.py' adding 'boost/rational.py' adding 'boost/std_pair.py' adding 'boost/tuple.py' adding 'boost_adaptbx/__init__.py' adding 'boost_adaptbx/hybrid_times.py' adding 'boost_adaptbx/libtbx_refresh.py' adding 'boost_adaptbx/run_tests.py' adding 'boost_adaptbx/boost/__init__.py' adding 'boost_adaptbx/boost/optional.py' adding 'boost_adaptbx/boost/python.py' adding 'boost_adaptbx/boost/rational.py' adding 'boost_adaptbx/boost/std_pair.py' adding 'boost_adaptbx/boost/tuple.py' adding 'boost_adaptbx/command_line/__init__.py' adding 'boost_adaptbx/command_line/divide_by_zero.py' adding 'boost_adaptbx/command_line/double_overflow.py' adding 'boost_adaptbx/command_line/gcd.py' adding 'boost_adaptbx/command_line/inexact.py' adding 'boost_adaptbx/command_line/int_overflow.py' adding 'boost_adaptbx/command_line/lcm.py' adding 'boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py' adding 'boost_adaptbx/command_line/segmentation_fault.py' adding 'boost_adaptbx/command_line/show_environ_usage.py' adding 'boost_adaptbx/command_line/show_platform_info.py' adding 'boost_adaptbx/graph/__init__.py' adding 'boost_adaptbx/graph/breadth_first_search.py' adding 'boost_adaptbx/graph/clustering_algorithm.py' adding 'boost_adaptbx/graph/connected_component_algorithm.py' adding 'boost_adaptbx/graph/graph_structure_comparison.py' adding 'boost_adaptbx/graph/maximum_clique.py' adding 'boost_adaptbx/graph/metric.py' adding 'boost_adaptbx/graph/min_cut_max_flow.py' adding 'boost_adaptbx/graph/minimum_cut_enumerate.py' adding 'boost_adaptbx/graph/utility.py' adding 'cbflib_adaptbx/__init__.py' adding 'cbflib_adaptbx/copy_files.py' adding 'cbflib_adaptbx/exercise_compression.py' adding 'cbflib_adaptbx/run_tests.py' adding 'cbflib_adaptbx/command_line/__init__.py' adding 'cbflib_adaptbx/command_line/dump.py' adding 'ccp4io_adaptbx/__init__.py' adding 'ccp4io_adaptbx/copy_files.py' adding 'ccp4io_adaptbx/tst.py' adding 'cctbx/__init__.py' adding 'cctbx/adptbx.py' adding 'cctbx/anharmonic.py' adding 'cctbx/crystal_orientation.py' adding 'cctbx/dmtbx.py' adding 'cctbx/euclidean_model_matching.py' adding 'cctbx/french_wilson.py' adding 'cctbx/libtbx_refresh.py' adding 'cctbx/math_module.py' adding 'cctbx/multipolar.py' adding 'cctbx/r_free_utils.py' adding 'cctbx/run_examples.py' adding 'cctbx/run_tests.py' adding 'cctbx/statistics.py' adding 'cctbx/symmetry_search.py' adding 'cctbx/translation_search.py' adding 'cctbx/adp_restraints/__init__.py' adding 'cctbx/adp_restraints/energies.py' adding 'cctbx/adp_restraints/flags.py' adding 'cctbx/adp_restraints/tst_ext.py' adding 'cctbx/array_family/__init__.py' adding 'cctbx/array_family/flex.py' adding 'cctbx/command_line/__init__.py' adding 'cctbx/command_line/auto_sharpen.py' adding 'cctbx/command_line/brehm_diederichs.py' adding 'cctbx/command_line/cctbx_test_nightly.py' adding 'cctbx/command_line/cod_select_and_pickle.py' adding 'cctbx/command_line/diffuse.py' adding 'cctbx/command_line/eltbx.show_fp_fdp.py' adding 'cctbx/command_line/euclidean_model_matching.py' adding 'cctbx/command_line/find_reticular_twin_laws.py' adding 'cctbx/command_line/form_factor_query.py' adding 'cctbx/command_line/precession_view.py' adding 'cctbx/command_line/qscore.py' adding 'cctbx/command_line/samosa_join.py' adding 'cctbx/command_line/samosa_scale.py' adding 'cctbx/command_line/segment_and_split_map.py' adding 'cctbx/command_line/space_group_info.py' adding 'cctbx/command_line/structure_factor_timings.py' adding 'cctbx/command_line/subgroups.py' adding 'cctbx/command_line/version.py' adding 'cctbx/command_line/wavelength_units.py' adding 'cctbx/covariance/__init__.py' adding 'cctbx/crystal/__init__.py' adding 'cctbx/crystal/burzlaff_zimmermann_dewolff.py' adding 'cctbx/crystal/close_packing.py' adding 'cctbx/crystal/coordination_sequences.py' adding 'cctbx/crystal/direct_space_asu.py' adding 'cctbx/crystal/distance_based_connectivity.py' adding 'cctbx/crystal/find_best_cell.py' adding 'cctbx/crystal/reindex.py' adding 'cctbx/crystal/super_cell.py' adding 'cctbx/crystal/tst_distance_based_connectivity.py' adding 'cctbx/crystal/tst_ext.py' adding 'cctbx/crystal/tst_super_cell.py' adding 'cctbx/development/__init__.py' adding 'cctbx/development/approx_amplitude_vs_resolution.py' adding 'cctbx/development/cns_density_modification.py' adding 'cctbx/development/create_models_or_maps.py' adding 'cctbx/development/debug_utils.py' adding 'cctbx/development/direct_or_fft.py' adding 'cctbx/development/electron_density_sampling.py' adding 'cctbx/development/fmt_utils.py' adding 'cctbx/development/github.py' adding 'cctbx/development/make_cns_input.py' adding 'cctbx/development/make_settings.py' adding 'cctbx/development/random_structure.py' adding 'cctbx/development/run_shelx.py' adding 'cctbx/development/run_shelx76.py' adding 'cctbx/development/space_group_option_parser.py' adding 'cctbx/development/structure_factor_utils.py' adding 'cctbx/development/tst_cns_epsilon.py' adding 'cctbx/development/tst_cns_hl.py' adding 'cctbx/eltbx/__init__.py' adding 'cctbx/eltbx/attenuation_coefficient.py' adding 'cctbx/eltbx/chemical_elements.py' adding 'cctbx/eltbx/covalent_radii.py' adding 'cctbx/eltbx/distance_based_connectivity.py' adding 'cctbx/eltbx/e_scattering.py' adding 'cctbx/eltbx/formula.py' adding 'cctbx/eltbx/fp_fdp.py' adding 'cctbx/eltbx/gaussian_fit.py' adding 'cctbx/eltbx/henke.py' adding 'cctbx/eltbx/icsd_radii.py' adding 'cctbx/eltbx/neutron.py' adding 'cctbx/eltbx/read_custom_scattering_dict.py' adding 'cctbx/eltbx/sasaki.py' adding 'cctbx/eltbx/tiny_pse.py' adding 'cctbx/eltbx/van_der_waals_radii.py' adding 'cctbx/eltbx/wavelengths.py' adding 'cctbx/eltbx/development/__init__.py' adding 'cctbx/eltbx/development/combine_fits.py' adding 'cctbx/eltbx/development/create_n_gaussian_raw_cpp.py' adding 'cctbx/eltbx/development/e_scattering_plots.py' adding 'cctbx/eltbx/development/format_gaussian_fits.py' adding 'cctbx/eltbx/development/hydrogen_plots.py' adding 'cctbx/eltbx/development/itvc_approx.py' adding 'cctbx/eltbx/development/itvc_cross_validation.py' adding 'cctbx/eltbx/development/itvc_fits.py' adding 'cctbx/eltbx/development/itvc_kissel.py' adding 'cctbx/eltbx/development/itvc_section61_io.py' adding 'cctbx/eltbx/development/kissel_fits.py' adding 'cctbx/eltbx/development/kissel_io.py' adding 'cctbx/eltbx/development/rez_rez_grant.py' adding 'cctbx/eltbx/xray_scattering/__init__.py' adding 'cctbx/examples/__init__.py' adding 'cctbx/examples/adp_symmetry_constraints.py' adding 'cctbx/examples/all_axes.py' adding 'cctbx/examples/analyze_adp.py' adding 'cctbx/examples/ccp4_map.py' adding 'cctbx/examples/change_hand_p31.py' adding 'cctbx/examples/convert_ccp4_symop_lib.py' adding 'cctbx/examples/cr2o3_consistency_checks.py' adding 'cctbx/examples/cr2o3_primitive_cell.py' adding 'cctbx/examples/exp_i_alpha_derivatives.py' adding 'cctbx/examples/f_model_example.py' adding 'cctbx/examples/fft_map_electron_density_around_atom.py' adding 'cctbx/examples/find_distances_using_cpp_objects.py' adding 'cctbx/examples/find_sys_abs_equiv_space_groups.py' adding 'cctbx/examples/g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/g_exp_i_partial_derivatives.py' adding 'cctbx/examples/getting_started.py' adding 'cctbx/examples/hirshfeld_test.py' adding 'cctbx/examples/le_page_1982_vs_lebedev_2005.py' adding 'cctbx/examples/lebedev_2005_perturbation.py' adding 'cctbx/examples/list_non_principal_continuous_shifts.py' adding 'cctbx/examples/location_part.py' adding 'cctbx/examples/map_skewness.py' adding 'cctbx/examples/maximum_subgroups.py' adding 'cctbx/examples/miller_common_sets.py' adding 'cctbx/examples/miller_transform.py' adding 'cctbx/examples/neutron_structure_factors.py' adding 'cctbx/examples/phase_o_phrenia.py' adding 'cctbx/examples/quartz_structure.py' adding 'cctbx/examples/random_f_calc.py' adding 'cctbx/examples/random_puckers.py' adding 'cctbx/examples/reduced_cell_two_folds.py' adding 'cctbx/examples/site_symmetry_constraints.py' adding 'cctbx/examples/site_symmetry_table.py' adding 'cctbx/examples/space_group_matrices.py' adding 'cctbx/examples/space_subgroups.py' adding 'cctbx/examples/steve_collins.py' adding 'cctbx/examples/structure_factor_derivatives.py' adding 'cctbx/examples/structure_factor_derivatives_2.py' adding 'cctbx/examples/structure_factor_derivatives_3.py' adding 'cctbx/examples/structure_factor_derivatives_4.py' adding 'cctbx/examples/sub_group_graph.py' adding 'cctbx/examples/symops_530.py' adding 'cctbx/examples/trigonal_r_vs_tetragonal_i.py' adding 'cctbx/examples/tst_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_phase_o_phrenia.py' adding 'cctbx/examples/tst_space_subgroups.py' adding 'cctbx/examples/tst_structure_factor_derivatives.py' adding 'cctbx/examples/tst_structure_factor_derivatives_2.py' adding 'cctbx/examples/tst_structure_factor_derivatives_3.py' adding 'cctbx/examples/tst_structure_factor_derivatives_4.py' adding 'cctbx/examples/unit_cell_minimizers.py' adding 'cctbx/examples/unit_cell_refinement.py' adding 'cctbx/examples/view_fft_map.py' adding 'cctbx/examples/merging/__init__.py' adding 'cctbx/examples/merging/data_subset.py' adding 'cctbx/examples/merging/data_utilities.py' adding 'cctbx/examples/merging/show_results.py' adding 'cctbx/examples/merging/sigma_correction.py' adding 'cctbx/examples/merging/task4.py' adding 'cctbx/examples/merging/test1.py' adding 'cctbx/examples/merging/test_cc_half.py' adding 'cctbx/examples/merging/test_levenberg_sparse.py' adding 'cctbx/examples/merging/tst_permutations.py' adding 'cctbx/examples/merging/samosa/__init__.py' adding 'cctbx/examples/merging/samosa/join.py' adding 'cctbx/examples/merging/samosa/per_lattice_postrefinement.py' adding 'cctbx/examples/merging/samosa/scale.py' adding 'cctbx/examples/structure_factor_calculus/__init__.py' adding 'cctbx/examples/structure_factor_calculus/site_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/u_star_derivatives.py' adding 'cctbx/geometry/__init__.py' adding 'cctbx/geometry_restraints/__init__.py' adding 'cctbx/geometry_restraints/auto_linking_types.py' adding 'cctbx/geometry_restraints/base_geometry.py' adding 'cctbx/geometry_restraints/distance_least_squares.py' adding 'cctbx/geometry_restraints/energies.py' adding 'cctbx/geometry_restraints/flags.py' adding 'cctbx/geometry_restraints/lbfgs.py' adding 'cctbx/geometry_restraints/linking_class.py' adding 'cctbx/geometry_restraints/manager.py' adding 'cctbx/geometry_restraints/process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/standard_cif_links.py' adding 'cctbx/geometry_restraints/tst_angle_derivs.py' adding 'cctbx/geometry_restraints/tst_ext.py' adding 'cctbx/geometry_restraints/tst_motif.py' adding 'cctbx/geometry_restraints/tst_process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/tst_proxy_registry.py' adding 'cctbx/macro_mol/__init__.py' adding 'cctbx/macro_mol/rotation_parameters.py' adding 'cctbx/maptbx/__init__.py' adding 'cctbx/maptbx/auto_sharpen.py' adding 'cctbx/maptbx/box.py' adding 'cctbx/maptbx/fsc_curve.py' adding 'cctbx/maptbx/map_symmetry.py' adding 'cctbx/maptbx/mask.py' adding 'cctbx/maptbx/mem.py' adding 'cctbx/maptbx/minimization.py' adding 'cctbx/maptbx/prepare_map_for_docking.py' adding 'cctbx/maptbx/prepare_map_for_refinement.py' adding 'cctbx/maptbx/qscore.py' adding 'cctbx/maptbx/real_space_refinement_simple.py' adding 'cctbx/maptbx/refine_scales_errors.py' adding 'cctbx/maptbx/refine_sharpening.py' adding 'cctbx/maptbx/resolution_from_map_and_model.py' adding 'cctbx/maptbx/segment_and_split_map.py' adding 'cctbx/maptbx/tst_asymmetric_map.py' adding 'cctbx/maptbx/tst_atom_curves.py' adding 'cctbx/maptbx/tst_atom_radius_as_central_peak_width.py' adding 'cctbx/maptbx/tst_bcr.py' adding 'cctbx/maptbx/tst_ccp.py' adding 'cctbx/maptbx/tst_get_percentile_cutoffs.py' adding 'cctbx/maptbx/tst_interpolation.py' adding 'cctbx/maptbx/tst_interpolation_2.py' adding 'cctbx/maptbx/tst_loft.py' adding 'cctbx/maptbx/tst_map_peak_3d_as_2d.py' adding 'cctbx/maptbx/tst_mask.py' adding 'cctbx/maptbx/tst_peak_volume_estimate.py' adding 'cctbx/maptbx/tst_qscore.py' adding 'cctbx/maptbx/tst_real_space_refinement_simple.py' adding 'cctbx/maptbx/tst_resolution_from_map_and_model.py' adding 'cctbx/maptbx/tst_target_and_gradients.py' adding 'cctbx/maptbx/bcr/__init__.py' adding 'cctbx/maptbx/bcr/bcr.py' adding 'cctbx/maptbx/bcr/compute_tables.py' adding 'cctbx/maptbx/bcr/qmap.py' adding 'cctbx/maptbx/bcr/tst_adp_refine.py' adding 'cctbx/maptbx/bcr/tst_example.py' adding 'cctbx/maptbx/bcr/tst_qmap_02.py' adding 'cctbx/maptbx/bcr/tst_table.py' adding 'cctbx/maptbx/bcr/tst_two_atoms.py' adding 'cctbx/maptbx/bcr/tst_vrm.py' adding 'cctbx/maptbx/bcr/tst_vrm2.py' adding 'cctbx/masks/__init__.py' adding 'cctbx/merging/__init__.py' adding 'cctbx/merging/brehm_diederichs.py' adding 'cctbx/miller/__init__.py' adding 'cctbx/miller/display.py' adding 'cctbx/miller/reindexing.py' adding 'cctbx/miller/tst_map_to_asu_isym.py' adding 'cctbx/miller/tst_reindexing.py' adding 'cctbx/neutron/__init__.py' adding 'cctbx/omz/__init__.py' adding 'cctbx/omz/bfgs.py' adding 'cctbx/omz/cif_refine.py' adding 'cctbx/omz/cod_refine.py' adding 'cctbx/omz/cod_select_and_pickle.py' adding 'cctbx/omz/dev.py' adding 'cctbx/omz/eval_iso_vs_refined.py' adding 'cctbx/omz/pdb_dev.py' adding 'cctbx/omz/tardy_adaptor.py' adding 'cctbx/omz/tst_bfgs.py' adding 'cctbx/omz/tst_dev.py' adding 'cctbx/regression/__init__.py' adding 'cctbx/regression/tst_adp_aniso_restraints.py' adding 'cctbx/regression/tst_adp_constraints.py' adding 'cctbx/regression/tst_adp_constraints_cartesian.py' adding 'cctbx/regression/tst_amplitude_normalisation.py' adding 'cctbx/regression/tst_change_basis.py' adding 'cctbx/regression/tst_connectivity.py' adding 'cctbx/regression/tst_connectivity_allsym.py' adding 'cctbx/regression/tst_coordination_sequences.py' adding 'cctbx/regression/tst_create_models_or_maps.py' adding 'cctbx/regression/tst_crystal.py' adding 'cctbx/regression/tst_crystal_asu_clusters.py' adding 'cctbx/regression/tst_crystal_close_packing.py' adding 'cctbx/regression/tst_diffuse.py' adding 'cctbx/regression/tst_direct_scaling.py' adding 'cctbx/regression/tst_direct_space_asu.py' adding 'cctbx/regression/tst_emma.py' adding 'cctbx/regression/tst_expand_to_p1.py' adding 'cctbx/regression/tst_f_model.py' adding 'cctbx/regression/tst_fast_nv1995.py' adding 'cctbx/regression/tst_fcalc_fft_stability.py' adding 'cctbx/regression/tst_find_best_cell.py' adding 'cctbx/regression/tst_fourier_transform_real_part_at_x.py' adding 'cctbx/regression/tst_french_wilson.py' adding 'cctbx/regression/tst_geometry_restraints.py' adding 'cctbx/regression/tst_geometry_restraints_2.py' adding 'cctbx/regression/tst_geometry_restraints_lbfgs.py' adding 'cctbx/regression/tst_grm_modifications.py' adding 'cctbx/regression/tst_grm_modifications_rm.py' adding 'cctbx/regression/tst_grm_pickling.py' adding 'cctbx/regression/tst_grouped_data.py' adding 'cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py' adding 'cctbx/regression/tst_krivy_gruber.py' adding 'cctbx/regression/tst_loc_res.py' adding 'cctbx/regression/tst_map_is_periodic.py' adding 'cctbx/regression/tst_map_weights_for_symmetry_summation.py' adding 'cctbx/regression/tst_maptbx_box.py' adding 'cctbx/regression/tst_maptbx_mask.py' adding 'cctbx/regression/tst_maptbx_structure_factors.py' adding 'cctbx/regression/tst_math_module.py' adding 'cctbx/regression/tst_mem.py' adding 'cctbx/regression/tst_mem_2.py' adding 'cctbx/regression/tst_miller.py' adding 'cctbx/regression/tst_miller_data_manipulation.py' adding 'cctbx/regression/tst_miller_double_step_filtration.py' adding 'cctbx/regression/tst_miller_fft_map.py' adding 'cctbx/regression/tst_miller_lookup_utils.py' adding 'cctbx/regression/tst_miller_merge_equivalents.py' adding 'cctbx/regression/tst_miller_statistics.py' adding 'cctbx/regression/tst_niggli_reduction_cpp.py' adding 'cctbx/regression/tst_pair_asu_table.py' adding 'cctbx/regression/tst_pointgroup_tools.py' adding 'cctbx/regression/tst_prepare_map_for_docking.py' adding 'cctbx/regression/tst_r_free_utils.py' adding 'cctbx/regression/tst_reciprocal_space_asu.py' adding 'cctbx/regression/tst_refine_xray_curvs.py' adding 'cctbx/regression/tst_reflection_statistics.py' adding 'cctbx/regression/tst_sampled_model_density.py' adding 'cctbx/regression/tst_sf_low_res_accuracy.py' adding 'cctbx/regression/tst_sgtbx.py' adding 'cctbx/regression/tst_sgtbx_denominators.py' adding 'cctbx/regression/tst_sgtbx_harker.py' adding 'cctbx/regression/tst_sgtbx_lattice_symmetry.py' adding 'cctbx/regression/tst_sgtbx_site_constraints.py' adding 'cctbx/regression/tst_sgtbx_special_op_simplifier.py' adding 'cctbx/regression/tst_sgtbx_subgroups.py' adding 'cctbx/regression/tst_sgtbx_tidy_pickling.py' adding 'cctbx/regression/tst_show_cosets.py' adding 'cctbx/regression/tst_space_group_type_tidy_cb_op_t.py' adding 'cctbx/regression/tst_sphericity.py' adding 'cctbx/regression/tst_statistics_graphs.py' adding 'cctbx/regression/tst_triplet_generator.py' adding 'cctbx/regression/tst_twin_target.py' adding 'cctbx/regression/tst_wavelength_units.py' adding 'cctbx/regression/tst_web_change_basis.py' adding 'cctbx/regression/tst_weighting_schemes.py' adding 'cctbx/regression/tst_wilson_plot.py' adding 'cctbx/regression/tst_xray.py' adding 'cctbx/regression/tst_xray_derivatives.py' adding 'cctbx/regression/tst_xray_fast_gradients.py' adding 'cctbx/regression/tst_xray_minimization.py' adding 'cctbx/regression/tst_xray_minimization_failure.py' adding 'cctbx/regression/tst_xray_target_functors.py' adding 'cctbx/sgtbx/__init__.py' adding 'cctbx/sgtbx/bravais_types.py' adding 'cctbx/sgtbx/cosets.py' adding 'cctbx/sgtbx/harker.py' adding 'cctbx/sgtbx/lattice_symmetry.py' adding 'cctbx/sgtbx/literal_description.py' adding 'cctbx/sgtbx/plane_groups.py' adding 'cctbx/sgtbx/pointgroup_tools.py' adding 'cctbx/sgtbx/rational_matrices_point_groups.py' adding 'cctbx/sgtbx/reticular_pg_tools.py' adding 'cctbx/sgtbx/reticular_twin_laws.py' adding 'cctbx/sgtbx/show_cosets.py' adding 'cctbx/sgtbx/sub_lattice_tools.py' adding 'cctbx/sgtbx/subgroups.py' adding 'cctbx/sgtbx/symbol_confidence.py' adding 'cctbx/sgtbx/sys_abs_equiv.py' adding 'cctbx/sgtbx/direct_space_asu/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/check_redundancies.py' adding 'cctbx/sgtbx/direct_space_asu/cut_plane.py' adding 'cctbx/sgtbx/direct_space_asu/facet_analysis.py' adding 'cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/short_cuts.py' adding 'cctbx/sgtbx/direct_space_asu/proto/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py' adding 'cctbx/sgtbx/direct_space_asu/proto/tst_asu.py' adding 'cctbx/source_generators/__init__.py' adding 'cctbx/source_generators/flex_fwd_h.py' adding 'cctbx/source_generators/eltbx/__init__.py' adding 'cctbx/source_generators/eltbx/generate_henke_cpp.py' adding 'cctbx/source_generators/eltbx/generate_sasaki_cpp.py' adding 'cctbx/uctbx/__init__.py' adding 'cctbx/uctbx/gruber_1973.py' adding 'cctbx/uctbx/gruber_1973_table_1.py' adding 'cctbx/uctbx/krivy_gruber_1976.py' adding 'cctbx/uctbx/reduction_base.py' adding 'cctbx/uctbx/determine_unit_cell/__init__.py' adding 'cctbx/web/__init__.py' adding 'cctbx/web/all_axes.py' adding 'cctbx/web/browse_settings.py' adding 'cctbx/web/cgi_utils.py' adding 'cctbx/web/change_basis.py' adding 'cctbx/web/change_hand.py' adding 'cctbx/web/change_setting.py' adding 'cctbx/web/dispatcher.py' adding 'cctbx/web/emma.py' adding 'cctbx/web/explore_symmetry.py' adding 'cctbx/web/frac_cart.py' adding 'cctbx/web/io_utils.py' adding 'cctbx/web/iotbx_cif_validate.py' adding 'cctbx/web/lattice_symmetry.py' adding 'cctbx/web/libtbx_help.py' adding 'cctbx/web/multiple_cell.py' adding 'cctbx/web/phase_o_phrenia.py' adding 'cctbx/web/replay.py' adding 'cctbx/web/shelx.py' adding 'cctbx/web/structure_factors.py' adding 'cctbx/web/structure_factors_pdb.py' adding 'cctbx/web/wyckoff.py' adding 'cctbx/web/asu_gallery/__init__.py' adding 'cctbx/web/asu_gallery/guide_to_notation.py' adding 'cctbx/web/asu_gallery/jv_asu.py' adding 'cctbx/web/asu_gallery/jv_index.py' adding 'cctbx/web/asu_gallery/jvx.py' adding 'cctbx/web/asu_gallery/web_links.py' adding 'cctbx/xray/__init__.py' adding 'cctbx/xray/ext.py' adding 'cctbx/xray/minimization.py' adding 'cctbx/xray/observation_types.py' adding 'cctbx/xray/scatterer.py' adding 'cctbx/xray/structure.py' adding 'cctbx/xray/target_functors.py' adding 'cctbx/xray/weighting_schemes.py' adding 'cctbx/xray/observations/__init__.py' adding 'cctbx/xray/observations/tst_observations.py' adding 'cctbx/xray/structure_factors/__init__.py' adding 'cctbx/xray/structure_factors/algorithm.py' adding 'cctbx/xray/structure_factors/from_scatterers.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct_parallel.py' adding 'cctbx/xray/structure_factors/from_scatterers_fft.py' adding 'cctbx/xray/structure_factors/global_counters.py' adding 'cctbx/xray/structure_factors/gradient_flags.py' adding 'cctbx/xray/structure_factors/gradients.py' adding 'cctbx/xray/structure_factors/gradients_base.py' adding 'cctbx/xray/structure_factors/gradients_direct.py' adding 'cctbx/xray/structure_factors/gradients_fft.py' adding 'cctbx/xray/structure_factors/manager.py' adding 'cctbx/xray/structure_factors/misc.py' adding 'cctbx/xray/targets/__init__.py' adding 'cctbx/xray/targets/r1.py' adding 'cctbx/xray/targets/tst_r1.py' adding 'cctbx/xray/targets/tst_shelxl_wght_ls.py' adding 'cctbx-2023.12.dist-info/licenses/LICENSE.txt' adding 'cctbx_website/__init__.py' adding 'cctbx_website/libtbx_refresh.py' adding 'cctbx_website/run_tests.py' adding 'cctbx_website/command_line/__init__.py' adding 'cctbx_website/command_line/comment_to_docstring.py' adding 'cctbx_website/command_line/edit_for_boost.py' adding 'cctbx_website/command_line/edit_html.py' adding 'cctbx_website/command_line/extract_script_from_html_cctbx_doc.py' adding 'cctbx_website/command_line/run_pdoc_cctbx_api.py' adding 'cctbx_website/command_line/tst_comment_to_docstring.py' adding 'cctbx_website/regression/__init__.py' adding 'cctbx_website/regression/exercise.py' adding 'cctbx_website/regression/tst_10_doc_programming_tips_1.py' adding 'cctbx_website/regression/tst_11_script_1.py' adding 'cctbx_website/regression/tst_12_script_compare_ss.py' adding 'cctbx_website/regression/tst_13_script_ideal_ss.py' adding 'cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py' adding 'cctbx_website/regression/tst_15_doc_models_hierarchy.py' adding 'cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py' adding 'cctbx_website/regression/tst_17_script_rfactors.py' adding 'cctbx_website/regression/tst_18_doc_programming_tips_2.py' adding 'cctbx_website/regression/tst_19_doc_programming_tips_3.py' adding 'cctbx_website/regression/tst_1_template.py' adding 'cctbx_website/regression/tst_2_doc_hlo_intro.py' adding 'cctbx_website/regression/tst_3_doc_hlo_model_manager.py' adding 'cctbx_website/regression/tst_4_doc_hlo_data_manager.py' adding 'cctbx_website/regression/tst_5_doc_hlo_map_manager.py' adding 'cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py' adding 'cctbx_website/regression/tst_7_doc_low_flex_advanced.py' adding 'cctbx_website/regression/tst_8_doc_maps_intro.py' adding 'cctbx_website/regression/tst_9_doc_maps_boxing.py' adding 'cctbx_website/regression/tst_py_from_html.py' adding 'cma_es/__init__.py' adding 'cma_es/cma_es_interface.py' adding 'cma_es/run_tests.py' adding 'cma_es/tst_cma_es.py' adding 'cootbx/__init__.py' adding 'cootbx/hydrogens_button.py' adding 'cootbx/interactive_edit.py' adding 'cootbx/ligand_checklist.py' adding 'cootbx/simple_zoom_list.py' adding 'cootbx/validation_lists.py' adding 'cootbx/view_refinement.py' adding 'cootbx/watch_file.py' adding 'cootbx/xmlrpc_server.py' adding 'fable/__init__.py' adding 'fable/cout.py' adding 'fable/equivalence.py' adding 'fable/intrinsics.py' adding 'fable/read.py' adding 'fable/run_tests.py' adding 'fable/simple_compilation.py' adding 'fable/tokenization.py' adding 'fable/tst_cout.py' adding 'fable/tst_cout_compile.py' adding 'fable/tst_equivalence.py' adding 'fable/tst_ext.py' adding 'fable/tst_read.py' adding 'fable/utils.py' adding 'fable/command_line/__init__.py' adding 'fable/command_line/cout.py' adding 'fable/command_line/fem_include_search_paths.py' adding 'fable/command_line/insert_write_at_start_of_each_procedure.py' adding 'fable/command_line/read.py' adding 'fable/command_line/show_calls.py' adding 'fable/command_line/split.py' adding 'fast_linalg/__init__.py' adding 'fftw3tbx/__init__.py' adding 'fftw3tbx/libtbx_refresh.py' adding 'fftw3tbx/tst_ext.py' adding 'gltbx/__init__.py' adding 'gltbx/extract_opengl_specs.py' adding 'gltbx/fonts.py' adding 'gltbx/generate_defines_bpl.py' adding 'gltbx/generate_fonts_ucs_cpp.py' adding 'gltbx/generate_functions_bpl.py' adding 'gltbx/gl.py' adding 'gltbx/gl_managed.py' adding 'gltbx/glu.py' adding 'gltbx/images.py' adding 'gltbx/libtbx_refresh.py' adding 'gltbx/quadrics.py' adding 'gltbx/run_tests.py' adding 'gltbx/tst.py' adding 'gltbx/tst_ellipsoids.py' adding 'gltbx/tst_fonts.py' adding 'gltbx/tst_viewer_utils.py' adding 'gltbx/util.py' adding 'gltbx/viewer_utils.py' adding 'gltbx/wx_cube.py' adding 'gltbx/wx_ellipsoids_test.py' adding 'gltbx/wx_motion_on_tab.py' adding 'gltbx/wx_scene.py' adding 'gltbx/wx_viewer.py' adding 'gltbx/wx_viewer_example.py' adding 'gltbx/wx_viewer_leapmotion.py' adding 'gltbx/wx_viewers_images.py' adding 'gltbx/command_line/__init__.py' adding 'gltbx/command_line/try_imports.py' adding 'iotbx/__init__.py' adding 'iotbx/builders.py' adding 'iotbx/builders_depending_on_smtbx.py' adding 'iotbx/cif_mtz_data_labels.py' adding 'iotbx/cli_parser.py' adding 'iotbx/crystal_symmetry_from_any.py' adding 'iotbx/csv_utils.py' adding 'iotbx/data_plots.py' adding 'iotbx/extract_xtal_data.py' adding 'iotbx/file_reader.py' adding 'iotbx/format.py' adding 'iotbx/libtbx_refresh.py' adding 'iotbx/logfiles.py' adding 'iotbx/map_manager.py' adding 'iotbx/map_model_manager.py' adding 'iotbx/map_tools.py' adding 'iotbx/merging_statistics.py' adding 'iotbx/mtrix_biomt.py' adding 'iotbx/option_parser.py' adding 'iotbx/phases.py' adding 'iotbx/phil.py' adding 'iotbx/poscar.py' adding 'iotbx/pymol.py' adding 'iotbx/ranges.py' adding 'iotbx/reflection_file_converter.py' adding 'iotbx/reflection_file_editor.py' adding 'iotbx/reflection_file_reader.py' adding 'iotbx/reflection_file_utils.py' adding 'iotbx/run_tests.py' adding 'iotbx/simple_parser.py' adding 'iotbx/symmetry.py' adding 'iotbx/table_one.py' adding 'iotbx/wildcard.py' adding 'iotbx/PrettyPrint/__init__.py' adding 'iotbx/PrettyPrint/tables.py' adding 'iotbx/bioinformatics/__init__.py' adding 'iotbx/bioinformatics/alignment_as_hsearch.py' adding 'iotbx/bioinformatics/ebi_wu_blast_xml.py' adding 'iotbx/bioinformatics/homologues.py' adding 'iotbx/bioinformatics/local_blast.py' adding 'iotbx/bioinformatics/ncbi_blast_xml.py' adding 'iotbx/bioinformatics/pdb_info.py' adding 'iotbx/bioinformatics/pubmed.py' adding 'iotbx/bioinformatics/structure.py' adding 'iotbx/bioinformatics/xmlbuild.py' adding 'iotbx/ccp4_map/__init__.py' adding 'iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/ccp4_map/tst.py' adding 'iotbx/cif/__init__.py' adding 'iotbx/cif/builders.py' adding 'iotbx/cif/citations.py' adding 'iotbx/cif/cod_tools.py' adding 'iotbx/cif/crystal_symmetry_from_cif.py' adding 'iotbx/cif/errors.py' adding 'iotbx/cif/geometry.py' adding 'iotbx/cif/model.py' adding 'iotbx/cif/restraint_file_merge.py' adding 'iotbx/cif/restraints.py' adding 'iotbx/cif/validation.py' adding 'iotbx/cns/__init__.py' adding 'iotbx/cns/crystal_symmetry_from_inp.py' adding 'iotbx/cns/crystal_symmetry_from_sdb.py' adding 'iotbx/cns/crystal_symmetry_utils.py' adding 'iotbx/cns/index_fobs_sigma_reader.py' adding 'iotbx/cns/miller_array.py' adding 'iotbx/cns/pdb_remarks.py' adding 'iotbx/cns/reflection_reader.py' adding 'iotbx/cns/sdb_reader.py' adding 'iotbx/cns/sdb_writer.py' adding 'iotbx/cns/space_group_symbols.py' adding 'iotbx/cns/tst_cns.py' adding 'iotbx/cns/xray_structure.py' adding 'iotbx/command_line/__init__.py' adding 'iotbx/command_line/biomt_reconstruction.py' adding 'iotbx/command_line/blast_pdb.py' adding 'iotbx/command_line/build_phil_cache.py' adding 'iotbx/command_line/cbf_read.py' adding 'iotbx/command_line/cif.as_miller_arrays.py' adding 'iotbx/command_line/cif.as_xray_structure.py' adding 'iotbx/command_line/cif.validate.py' adding 'iotbx/command_line/cif_as_pdb.py' adding 'iotbx/command_line/cns.reflection_reader.py' adding 'iotbx/command_line/cns.sdb_reader.py' adding 'iotbx/command_line/cns.transfer_crystal_symmetry.py' adding 'iotbx/command_line/cns_as_mtz.py' adding 'iotbx/command_line/crystal_symmetry_from_any.py' adding 'iotbx/command_line/csv_as_mtz.py' adding 'iotbx/command_line/dano_as_amplitudes.py' adding 'iotbx/command_line/detector_image_as_png.py' adding 'iotbx/command_line/distance_least_squares.py' adding 'iotbx/command_line/dtrek.to_cns.py' adding 'iotbx/command_line/effective_resolution.py' adding 'iotbx/command_line/emma.py' adding 'iotbx/command_line/explore_metric_symmetry.py' adding 'iotbx/command_line/export_scalepack_unmerged.py' adding 'iotbx/command_line/file_reader.py' adding 'iotbx/command_line/flip_symmetric_amino_acids.py' adding 'iotbx/command_line/french_wilson.py' adding 'iotbx/command_line/get_pubmed_citation.py' adding 'iotbx/command_line/lattice_symmetry.py' adding 'iotbx/command_line/merging_statistics.py' adding 'iotbx/command_line/mtrix_reconstruction.py' adding 'iotbx/command_line/mtz.dump.py' adding 'iotbx/command_line/mtz_as_cif.py' adding 'iotbx/command_line/patterson_map.py' adding 'iotbx/command_line/pdb.as_xray_structure.py' adding 'iotbx/command_line/pdb.b_factor_stats.py' adding 'iotbx/command_line/pdb.box_around_molecule.py' adding 'iotbx/command_line/pdb.hierarchy.py' adding 'iotbx/command_line/pdb.insert_scale_records.py' adding 'iotbx/command_line/pdb.join_fragment_files.py' adding 'iotbx/command_line/pdb.link_as_geometry_restraints_edits.py' adding 'iotbx/command_line/pdb.print_sequence.py' adding 'iotbx/command_line/pdb.superpose_atoms_by_name.py' adding 'iotbx/command_line/pdb.superpose_centers_of_mass.py' adding 'iotbx/command_line/pdb_add_conformations.py' adding 'iotbx/command_line/pdb_as_cif.py' adding 'iotbx/command_line/pdb_as_fasta.py' adding 'iotbx/command_line/pdb_cif_conversion.py' adding 'iotbx/command_line/pdb_get_citation.py' adding 'iotbx/command_line/pdb_labels_comparison.py' adding 'iotbx/command_line/pdb_labels_diff.py' adding 'iotbx/command_line/pdb_remediator.py' adding 'iotbx/command_line/pdb_show_connectivity.py' adding 'iotbx/command_line/pdb_split_models.py' adding 'iotbx/command_line/phil.py' adding 'iotbx/command_line/poscar_as_xray_structure.py' adding 'iotbx/command_line/r_free_flags_accumulation.py' adding 'iotbx/command_line/r_free_flags_as_cns.py' adding 'iotbx/command_line/r_free_flags_completion_simple.py' adding 'iotbx/command_line/reflection_file_converter.py' adding 'iotbx/command_line/reflection_file_editor.py' adding 'iotbx/command_line/reflection_file_reader.py' adding 'iotbx/command_line/reflection_statistics.py' adding 'iotbx/command_line/reindex.py' adding 'iotbx/command_line/shelx.as_cif.py' adding 'iotbx/command_line/shelx.as_xray_structure.py' adding 'iotbx/command_line/shelx.dump_as_python.py' adding 'iotbx/command_line/show_distances.py' adding 'iotbx/command_line/show_systematic_absences.py' adding 'iotbx/command_line/simple_map_coefficients.py' adding 'iotbx/command_line/sort_atoms.py' adding 'iotbx/command_line/split_data_cif.py' adding 'iotbx/command_line/symmetry_search.py' adding 'iotbx/command_line/unique_with_biomt.py' adding 'iotbx/command_line/xplor.map.show_summary.py' adding 'iotbx/data_manager/__init__.py' adding 'iotbx/data_manager/common.py' adding 'iotbx/data_manager/map_coefficients.py' adding 'iotbx/data_manager/miller_array.py' adding 'iotbx/data_manager/model.py' adding 'iotbx/data_manager/ncs_spec.py' adding 'iotbx/data_manager/phil.py' adding 'iotbx/data_manager/real_map.py' adding 'iotbx/data_manager/restraint.py' adding 'iotbx/data_manager/sequence.py' adding 'iotbx/detectors/__init__.py' adding 'iotbx/detectors/active_area_filter.py' adding 'iotbx/detectors/adsc.py' adding 'iotbx/detectors/adsc_minicbf.py' adding 'iotbx/detectors/adsc_module.py' adding 'iotbx/detectors/beam_center_convention.py' adding 'iotbx/detectors/bruker.py' adding 'iotbx/detectors/cbf.py' adding 'iotbx/detectors/cspad_detector_formats.py' adding 'iotbx/detectors/detectorbase.py' adding 'iotbx/detectors/dtrek.py' adding 'iotbx/detectors/edf.py' adding 'iotbx/detectors/eiger.py' adding 'iotbx/detectors/eiger_minicbf.py' adding 'iotbx/detectors/generic_detector.py' adding 'iotbx/detectors/hamamatsu.py' adding 'iotbx/detectors/image_from_http_request.py' adding 'iotbx/detectors/macscience.py' adding 'iotbx/detectors/mar.py' adding 'iotbx/detectors/marIP.py' adding 'iotbx/detectors/noir.py' adding 'iotbx/detectors/npy.py' adding 'iotbx/detectors/pilatus_minicbf.py' adding 'iotbx/detectors/pilatus_slice.py' adding 'iotbx/detectors/raxis.py' adding 'iotbx/detectors/raxis_nonsquare.py' adding 'iotbx/detectors/raxisbase.py' adding 'iotbx/detectors/saturn.py' adding 'iotbx/detectors/test_mar.py' adding 'iotbx/detectors/test_raxis2.py' adding 'iotbx/detectors/tst_adsc.py' adding 'iotbx/detectors/tst_cbf_comp_read_meth.py' adding 'iotbx/detectors/tst_debug_write.py' adding 'iotbx/detectors/tst_detectors.py' adding 'iotbx/detectors/tst_py_cbf.py' adding 'iotbx/detectors/url_support.py' adding 'iotbx/detectors/context/__init__.py' adding 'iotbx/detectors/context/camera_convention.py' adding 'iotbx/detectors/context/config_detector.py' adding 'iotbx/detectors/context/endstation.py' adding 'iotbx/detectors/context/endstation_max_iv_trial.py' adding 'iotbx/detectors/context/spot_xy_convention.py' adding 'iotbx/detectors/util/__init__.py' adding 'iotbx/detectors/util/filters.py' adding 'iotbx/dsn6/__init__.py' adding 'iotbx/dsn6/tst.py' adding 'iotbx/dtrek/__init__.py' adding 'iotbx/dtrek/crystal_symmetry_from_ref.py' adding 'iotbx/dtrek/dtrek_symmetry_dict.py' adding 'iotbx/dtrek/reflnlist_reader.py' adding 'iotbx/examples/__init__.py' adding 'iotbx/examples/direct_methods_light.py' adding 'iotbx/examples/libtbx_phil_examples.py' adding 'iotbx/examples/mtz_convert_free_to_work.py' adding 'iotbx/examples/mtz_free_flipper.py' adding 'iotbx/examples/pdb_hierarchy.py' adding 'iotbx/examples/pdb_shake.py' adding 'iotbx/examples/pdb_split_chains.py' adding 'iotbx/examples/pdb_symmetry_copies.py' adding 'iotbx/examples/pdb_tardy_conf_sampling_simple.py' adding 'iotbx/examples/pdb_to_map_simple.py' adding 'iotbx/examples/pdbx_mmcif_tutorial.py' adding 'iotbx/examples/prepare_model_for_rsr.py' adding 'iotbx/examples/recalculate_phenix_refine_r_factors.py' adding 'iotbx/examples/shelx_latt_sym_to_space_group_symbol.py' adding 'iotbx/examples/tst_mtz_free_flipper.py' adding 'iotbx/examples/pdb_truncate_to_ala/__init__.py' adding 'iotbx/examples/pdb_truncate_to_ala/tst.py' adding 'iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py' adding 'iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py' adding 'iotbx/examples/pdb_truncate_to_ala/v2_simple.py' adding 'iotbx/examples/pdb_truncate_to_ala/v3_better.py' adding 'iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py' adding 'iotbx/fullprof/__init__.py' adding 'iotbx/fullprof/read_pcr.py' adding 'iotbx/fullprof/write_pcr.py' adding 'iotbx/gui_tools/__init__.py' adding 'iotbx/gui_tools/cif_conversions.py' adding 'iotbx/gui_tools/import_data_and_flags.py' adding 'iotbx/gui_tools/models.py' adding 'iotbx/gui_tools/reflections.py' adding 'iotbx/gui_tools/tst.py' adding 'iotbx/kriber/__init__.py' adding 'iotbx/kriber/strudat.py' adding 'iotbx/kriber/tst_strudat.py' adding 'iotbx/mrcfile/__init__.py' adding 'iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/mtz/__init__.py' adding 'iotbx/mtz/crystal_symmetry_from_mtz.py' adding 'iotbx/mtz/extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst.py' adding 'iotbx/mtz/tst_dano.py' adding 'iotbx/mtz/tst_ext.py' adding 'iotbx/mtz/tst_extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst_miller_dict.py' adding 'iotbx/mtz/tst_unmerged.py' adding 'iotbx/ncs/__init__.py' adding 'iotbx/pdb/__init__.py' adding 'iotbx/pdb/aa_utils.py' adding 'iotbx/pdb/amino_acid_codes.py' adding 'iotbx/pdb/atom_name_interpretation.py' adding 'iotbx/pdb/atom_selection.py' adding 'iotbx/pdb/cryst1_interpretation.py' adding 'iotbx/pdb/crystal_symmetry_from_pdb.py' adding 'iotbx/pdb/download.py' adding 'iotbx/pdb/experiment_type.py' adding 'iotbx/pdb/extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/fetch.py' adding 'iotbx/pdb/forward_compatible_pdb_cif_conversion.py' adding 'iotbx/pdb/hierarchy.py' adding 'iotbx/pdb/hybrid_36.py' adding 'iotbx/pdb/misc_records_output.py' adding 'iotbx/pdb/mmcif.py' adding 'iotbx/pdb/modified_aa_names.py' adding 'iotbx/pdb/modified_rna_dna_names.py' adding 'iotbx/pdb/nucleic_acid_codes.py' adding 'iotbx/pdb/pdb_v3_cif_conversion.py' adding 'iotbx/pdb/pdbe.py' adding 'iotbx/pdb/rcsb.py' adding 'iotbx/pdb/records.py' adding 'iotbx/pdb/remark_290_interpretation.py' adding 'iotbx/pdb/remark_2_interpretation.py' adding 'iotbx/pdb/remark_3_interpretation.py' adding 'iotbx/pdb/rna_dna_detection.py' adding 'iotbx/pdb/secondary_structure.py' adding 'iotbx/pdb/tst_atom_name_interpretation.py' adding 'iotbx/pdb/tst_atom_selection.py' adding 'iotbx/pdb/tst_atom_selection_string.py' adding 'iotbx/pdb/tst_ext.py' adding 'iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/tst_hierarchy.py' adding 'iotbx/pdb/tst_hierarchy_atom_sort.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric_2.py' adding 'iotbx/pdb/tst_mmcif.py' adding 'iotbx/pdb/tst_mmcif_hierarchy.py' adding 'iotbx/pdb/tst_mmcif_hierarchy_2.py' adding 'iotbx/pdb/tst_pdb.py' adding 'iotbx/pdb/tst_read_mtrix_records_from_cif.py' adding 'iotbx/pdb/tst_rna_dna_atom_names.py' adding 'iotbx/pdb/tst_secondary_structure.py' adding 'iotbx/pdb/tst_secondary_structure_2.py' adding 'iotbx/pdb/tst_tls.py' adding 'iotbx/pdb/tst_utils.py' adding 'iotbx/pdb/utils.py' adding 'iotbx/pdb/web_service_api.py' adding 'iotbx/pdb/xray_structure.py' adding 'iotbx/pdb/remediation/__init__.py' adding 'iotbx/pdb/remediation/remediator.py' adding 'iotbx/pdb/remediation/tst_remediator.py' adding 'iotbx/programs/__init__.py' adding 'iotbx/programs/box_around_molecule.py' adding 'iotbx/programs/split_data_cif.py' adding 'iotbx/programs/unique_with_biomt.py' adding 'iotbx/regression/__init__.py' adding 'iotbx/regression/tst_add_conformations.py' adding 'iotbx/regression/tst_all_chain_ids.py' adding 'iotbx/regression/tst_atom_selections_10k.py' adding 'iotbx/regression/tst_bioinformatics.py' adding 'iotbx/regression/tst_box_around_molecule.py' adding 'iotbx/regression/tst_cif_1.py' adding 'iotbx/regression/tst_cif_as_pdb_1atom.py' adding 'iotbx/regression/tst_cli_parser.py' adding 'iotbx/regression/tst_crystal_symmetry_from_any.py' adding 'iotbx/regression/tst_csv_utils.py' adding 'iotbx/regression/tst_data_manager.py' adding 'iotbx/regression/tst_data_plots.py' adding 'iotbx/regression/tst_examples.py' adding 'iotbx/regression/tst_export_scalepack_unmerged.py' adding 'iotbx/regression/tst_extract_xtal_data.py' adding 'iotbx/regression/tst_fetch.py' adding 'iotbx/regression/tst_file_reader.py' adding 'iotbx/regression/tst_generate_n_char_string.py' adding 'iotbx/regression/tst_group_rounding.py' adding 'iotbx/regression/tst_hierarchy_altlocs.py' adding 'iotbx/regression/tst_hierarchy_copy_select.py' adding 'iotbx/regression/tst_hierarchy_forward_compatible_pdb.py' adding 'iotbx/regression/tst_hierarchy_id_str.py' adding 'iotbx/regression/tst_hierarchy_long_chain_ids_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_2.py' adding 'iotbx/regression/tst_hierarchy_long_resname_3.py' adding 'iotbx/regression/tst_hierarchy_long_resname_4.py' adding 'iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py' adding 'iotbx/regression/tst_hierarchy_occupancies_rounding.py' adding 'iotbx/regression/tst_hierarchy_pdb_v3.py' adding 'iotbx/regression/tst_lattice_symmetry.py' adding 'iotbx/regression/tst_map_manager.py' adding 'iotbx/regression/tst_map_manager_2.py' adding 'iotbx/regression/tst_map_manager_wrapping.py' adding 'iotbx/regression/tst_map_model_manager.py' adding 'iotbx/regression/tst_map_model_manager_2.py' adding 'iotbx/regression/tst_map_model_manager_3.py' adding 'iotbx/regression/tst_map_model_manager_4.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py' adding 'iotbx/regression/tst_map_model_manager_call_consistency.py' adding 'iotbx/regression/tst_map_model_manager_cif.py' adding 'iotbx/regression/tst_map_model_manager_external_sharpening_7.py' adding 'iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py' adding 'iotbx/regression/tst_map_model_manager_local_resolution_10.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py' adding 'iotbx/regression/tst_map_model_manager_tls_from_map_8.py' adding 'iotbx/regression/tst_map_tools.py' adding 'iotbx/regression/tst_merging_statistics.py' adding 'iotbx/regression/tst_miller_sort_asu.py' adding 'iotbx/regression/tst_mmcif_input.py' adding 'iotbx/regression/tst_mmcif_multimodel.py' adding 'iotbx/regression/tst_mmcif_segids.py' adding 'iotbx/regression/tst_mmcif_to_from_hierarchy.py' adding 'iotbx/regression/tst_mrc_io.py' adding 'iotbx/regression/tst_mtz_as_cif.py' adding 'iotbx/regression/tst_patterson.py' adding 'iotbx/regression/tst_pdb_as_cif.py' adding 'iotbx/regression/tst_pdb_as_fasta.py' adding 'iotbx/regression/tst_pdb_cif_cells.py' adding 'iotbx/regression/tst_pdb_cif_inputs.py' adding 'iotbx/regression/tst_pdb_link_records.py' adding 'iotbx/regression/tst_pdbx_mmcif_tutorial.py' adding 'iotbx/regression/tst_phases.py' adding 'iotbx/regression/tst_phil.py' adding 'iotbx/regression/tst_poscar.py' adding 'iotbx/regression/tst_reflection_file_editor.py' adding 'iotbx/regression/tst_reflection_file_reader.py' adding 'iotbx/regression/tst_reflection_file_utils.py' adding 'iotbx/regression/tst_reflection_statistics.py' adding 'iotbx/regression/tst_reindex.py' adding 'iotbx/regression/tst_restraints_merge.py' adding 'iotbx/regression/tst_selected_hierarchy_flip.py' adding 'iotbx/regression/tst_show_systematic_absences.py' adding 'iotbx/regression/tst_simple_map_coefficients.py' adding 'iotbx/regression/tst_simple_parser.py' adding 'iotbx/regression/tst_sort_atoms.py' adding 'iotbx/regression/tst_split_data_cif.py' adding 'iotbx/regression/tst_split_models.py' adding 'iotbx/regression/tst_symmetry.py' adding 'iotbx/regression/tst_wildcard.py' adding 'iotbx/regression/tst_xray_scale.py' adding 'iotbx/regression/utils.py' adding 'iotbx/regression/ncs/__init__.py' adding 'iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py' adding 'iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py' adding 'iotbx/regression/ncs/tst_ncs.py' adding 'iotbx/regression/ncs/tst_ncs_groups_preprocessing.py' adding 'iotbx/regression/ncs/tst_ncs_input.py' adding 'iotbx/regression/ncs/tst_ncs_reordered_chains.py' adding 'iotbx/regression/ncs/tst_ncs_search_broken_chain.py' adding 'iotbx/regression/ncs/tst_ncs_search_ligs.py' adding 'iotbx/regression/ncs/tst_ncs_search_shortcut_1.py' adding 'iotbx/regression/ncs/tst_ncs_user_selections.py' adding 'iotbx/regression/ncs/tst_ncs_without_validation.py' adding 'iotbx/scalepack/__init__.py' adding 'iotbx/scalepack/crystal_symmetry_from_hkl.py' adding 'iotbx/scalepack/merge.py' adding 'iotbx/scalepack/no_merge_original_index.py' adding 'iotbx/scalepack/space_group_dictionary.py' adding 'iotbx/scalepack/tst_merge.py' adding 'iotbx/scalepack/tst_no_merge_original_index.py' adding 'iotbx/shelx/__init__.py' adding 'iotbx/shelx/crystal_symmetry_from_ins.py' adding 'iotbx/shelx/errors.py' adding 'iotbx/shelx/fcf.py' adding 'iotbx/shelx/fvar_encoding.py' adding 'iotbx/shelx/hklf.py' adding 'iotbx/shelx/lexer.py' adding 'iotbx/shelx/parsers.py' adding 'iotbx/shelx/tokens.py' adding 'iotbx/shelx/tst_fvar_encoding.py' adding 'iotbx/shelx/tst_hklf.py' adding 'iotbx/shelx/tst_lex_parse_build.py' adding 'iotbx/shelx/tst_writer.py' adding 'iotbx/shelx/write_ins.py' adding 'iotbx/shelx/writer.py' adding 'iotbx/solve/__init__.py' adding 'iotbx/solve/crystal_symmetry_from_inp.py' adding 'iotbx/solve/fpfm_reader.py' adding 'iotbx/xds/__init__.py' adding 'iotbx/xds/blank_cbf.py' adding 'iotbx/xds/correction.py' adding 'iotbx/xds/crystal_symmetry_from_hkl.py' adding 'iotbx/xds/gain_cbf.py' adding 'iotbx/xds/geometry.py' adding 'iotbx/xds/integrate_hkl.py' adding 'iotbx/xds/read_ascii.py' adding 'iotbx/xds/spot_xds.py' adding 'iotbx/xds/xds_cbf.py' adding 'iotbx/xds/xds_inp.py' adding 'iotbx/xds/xparm.py' adding 'iotbx/xplor/__init__.py' adding 'iotbx/xplor/crystal_symmetry_from_map.py' adding 'iotbx/xplor/ext.py' adding 'iotbx/xplor/map.py' adding 'iotbx/xplor/tst_xplormap.py' adding 'libtbx/__init__.py' adding 'libtbx/assert_utils.py' adding 'libtbx/binary_search.py' adding 'libtbx/callbacks.py' adding 'libtbx/citations.py' adding 'libtbx/clear_paths.py' adding 'libtbx/cli.py' adding 'libtbx/cluster.py' adding 'libtbx/clusterTests.py' adding 'libtbx/code_analysis.py' adding 'libtbx/complex_math.py' adding 'libtbx/configure.py' adding 'libtbx/console_utils.py' adding 'libtbx/containers.py' adding 'libtbx/cpp_function_name.py' adding 'libtbx/crossmingw.py' adding 'libtbx/dlite.py' adding 'libtbx/easy_mp.py' adding 'libtbx/easy_pickle.py' adding 'libtbx/easy_profile.py' adding 'libtbx/easy_run.py' adding 'libtbx/env_config.py' adding 'libtbx/file_clutter.py' adding 'libtbx/find_reference_cycles.py' adding 'libtbx/forward_compatibility.py' adding 'libtbx/introspection.py' adding 'libtbx/libtbx_refresh.py' adding 'libtbx/load_env.py' adding 'libtbx/log.py' adding 'libtbx/math_utils.py' adding 'libtbx/metric_prefixes.py' adding 'libtbx/mpi4py.py' adding 'libtbx/object_oriented_patterns.py' adding 'libtbx/objgraph.py' adding 'libtbx/option_parser.py' adding 'libtbx/path.py' adding 'libtbx/pkg_utils.py' adding 'libtbx/program_template.py' adding 'libtbx/progress.py' adding 'libtbx/pyframe.py' adding 'libtbx/pyplot.py' adding 'libtbx/python_code_parsing.py' adding 'libtbx/resource_monitor.py' adding 'libtbx/run_tests.py' adding 'libtbx/runtime_utils.py' adding 'libtbx/simplexml.py' adding 'libtbx/smart_open.py' adding 'libtbx/start_print_trace.py' adding 'libtbx/str_utils.py' adding 'libtbx/subprocess_with_fixes.py' adding 'libtbx/table_utils.py' adding 'libtbx/thread_utils.py' adding 'libtbx/topological_sort.py' adding 'libtbx/try_hello_world_c.py' adding 'libtbx/tst_add_docstrings_with_ai.py' adding 'libtbx/tst_binary_search.py' adding 'libtbx/tst_citations.py' adding 'libtbx/tst_containers.py' adding 'libtbx/tst_dlite.py' adding 'libtbx/tst_easy_mp.py' adding 'libtbx/tst_easy_mp_multicore.py' adding 'libtbx/tst_easy_mp_state.py' adding 'libtbx/tst_easy_pickle.py' adding 'libtbx/tst_find_unused_imports.py' adding 'libtbx/tst_fully_buffered_timeout.py' adding 'libtbx/tst_mahalanobis.py' adding 'libtbx/tst_math_utils.py' adding 'libtbx/tst_object_oriented_patterns.py' adding 'libtbx/tst_path.py' adding 'libtbx/tst_program_template.py' adding 'libtbx/tst_python_code_parsing.py' adding 'libtbx/tst_representation.py' adding 'libtbx/tst_run_tests_parallel_retry.py' adding 'libtbx/tst_run_tests_parallel_unique_dirs.py' adding 'libtbx/tst_runtime_utils.py' adding 'libtbx/tst_scheduling.py' adding 'libtbx/tst_str_utils.py' adding 'libtbx/tst_thread_utils.py' adding 'libtbx/tst_topological_sort.py' adding 'libtbx/tst_utils.py' adding 'libtbx/tst_version.py' adding 'libtbx/tst_word_index_generator.py' adding 'libtbx/tst_xmlrpc_utils.py' adding 'libtbx/utils.py' adding 'libtbx/version.py' adding 'libtbx/wingide.py' adding 'libtbx/word_index_generator.py' adding 'libtbx/xmlrpc_server_example.py' adding 'libtbx/xmlrpc_utils.py' adding 'libtbx/auto_build/__init__.py' adding 'libtbx/auto_build/bootstrap.py' adding 'libtbx/auto_build/create_cctbx_bundle_for_installer.py' adding 'libtbx/auto_build/create_installer.py' adding 'libtbx/auto_build/create_mac_app.py' adding 'libtbx/auto_build/create_mac_pkg.py' adding 'libtbx/auto_build/create_windows_exe.py' adding 'libtbx/auto_build/create_windows_installer.py' adding 'libtbx/auto_build/install_base_packages.py' adding 'libtbx/auto_build/install_conda.py' adding 'libtbx/auto_build/install_distribution.py' adding 'libtbx/auto_build/installer_utils.py' adding 'libtbx/auto_build/make_bundle.py' adding 'libtbx/auto_build/package_defs.py' adding 'libtbx/auto_build/plus_installer.py' adding 'libtbx/auto_build/regenerate_module_files.py' adding 'libtbx/auto_build/rpath.py' adding 'libtbx/auto_build/setup_installer.py' adding 'libtbx/auto_build/write_gui_dispatcher_include.py' adding 'libtbx/bundle/__init__.py' adding 'libtbx/bundle/copy_all.py' adding 'libtbx/bundle/copy_build_libtbx.py' adding 'libtbx/bundle/copy_runtime_sources.py' adding 'libtbx/bundle/install_bat.py' adding 'libtbx/bundle/install_csh.py' adding 'libtbx/bundle/utils.py' adding 'libtbx/command_line/__init__.py' adding 'libtbx/command_line/add_docstrings_with_ai.py' adding 'libtbx/command_line/analyse_code_comments.py' adding 'libtbx/command_line/any2unix.py' adding 'libtbx/command_line/assert_line_count.py' adding 'libtbx/command_line/assert_not_show_diff.py' adding 'libtbx/command_line/assert_stdin.py' adding 'libtbx/command_line/assert_stdin_contains_strings.py' adding 'libtbx/command_line/assert_stdin_ends_with.py' adding 'libtbx/command_line/bootstrap.py' adding 'libtbx/command_line/bundle_as_exe.py' adding 'libtbx/command_line/cctbx_chunk.py' adding 'libtbx/command_line/check_libcpp.py' adding 'libtbx/command_line/clean_clutter.py' adding 'libtbx/command_line/clear_paths.py' adding 'libtbx/command_line/create_cctbx_bundle_for_installer.py' adding 'libtbx/command_line/create_install_script_bat.py' adding 'libtbx/command_line/create_installer.py' adding 'libtbx/command_line/create_mac_app.py' adding 'libtbx/command_line/create_selfx.py' adding 'libtbx/command_line/create_unzipsfx.py' adding 'libtbx/command_line/create_windows_exe.py' adding 'libtbx/command_line/dtrace.py' adding 'libtbx/command_line/easy_qsub.py' adding 'libtbx/command_line/env_run.py' adding 'libtbx/command_line/epydoc_run.py' adding 'libtbx/command_line/extract_code_from_txt.py' adding 'libtbx/command_line/find_clutter.py' adding 'libtbx/command_line/find_files.py' adding 'libtbx/command_line/find_in_repositories.py' adding 'libtbx/command_line/find_old_style_classes.py' adding 'libtbx/command_line/find_pdb_mmcif_problems.py' adding 'libtbx/command_line/find_reserved_names.py' adding 'libtbx/command_line/find_under_build.py' adding 'libtbx/command_line/find_untested.py' adding 'libtbx/command_line/find_unused_imports.py' adding 'libtbx/command_line/find_unused_imports_crude.py' adding 'libtbx/command_line/git_avoid_merges.py' adding 'libtbx/command_line/help.py' adding 'libtbx/command_line/import_all_ext.py' adding 'libtbx/command_line/import_all_python.py' adding 'libtbx/command_line/install.py' adding 'libtbx/command_line/install_conda.py' adding 'libtbx/command_line/ipython_shell_start.py' adding 'libtbx/command_line/line_count.py' adding 'libtbx/command_line/list_files.py' adding 'libtbx/command_line/list_modules.py' adding 'libtbx/command_line/list_source_files_sorted_by_size.py' adding 'libtbx/command_line/make_dist.py' adding 'libtbx/command_line/make_sphinx_html.py' adding 'libtbx/command_line/nequal.py' adding 'libtbx/command_line/parallel_simple.py' adding 'libtbx/command_line/path_utility.py' adding 'libtbx/command_line/phil.py' adding 'libtbx/command_line/prime_factors_of.py' adding 'libtbx/command_line/printenv.py' adding 'libtbx/command_line/py_compile_all.py' adding 'libtbx/command_line/raise_exception_for_testing.py' adding 'libtbx/command_line/reindent.py' adding 'libtbx/command_line/remote_processing.py' adding 'libtbx/command_line/remove_tree.py' adding 'libtbx/command_line/remove_unused_imports.py' adding 'libtbx/command_line/resource_monitor_plot.py' adding 'libtbx/command_line/run_pickled_function.py' adding 'libtbx/command_line/run_tests_parallel.py' adding 'libtbx/command_line/scons.py' adding 'libtbx/command_line/seconds_since_the_epoch.py' adding 'libtbx/command_line/sge_available_slots.py' adding 'libtbx/command_line/sge_qstat_counts.py' adding 'libtbx/command_line/show_all_on_path.py' adding 'libtbx/command_line/show_bin_path.py' adding 'libtbx/command_line/show_build_options.py' adding 'libtbx/command_line/show_build_path.py' adding 'libtbx/command_line/show_but_no_repr.py' adding 'libtbx/command_line/show_commands.py' adding 'libtbx/command_line/show_date_and_time.py' adding 'libtbx/command_line/show_dist_paths.py' adding 'libtbx/command_line/show_env.py' adding 'libtbx/command_line/show_environ_usage.py' adding 'libtbx/command_line/show_full_command_path.py' adding 'libtbx/command_line/show_host_and_user.py' adding 'libtbx/command_line/show_include_paths.py' adding 'libtbx/command_line/show_lib_path.py' adding 'libtbx/command_line/show_module_dependencies.py' adding 'libtbx/command_line/show_number_of_processors.py' adding 'libtbx/command_line/show_numeric_version.py' adding 'libtbx/command_line/show_numpy_version.py' adding 'libtbx/command_line/show_python_dependencies.py' adding 'libtbx/command_line/show_python_sys_executable.py' adding 'libtbx/command_line/show_pythonpath.py' adding 'libtbx/command_line/show_repository_paths.py' adding 'libtbx/command_line/show_tests.py' adding 'libtbx/command_line/show_variable_names.py' adding 'libtbx/command_line/sphinx_build.py' adding 'libtbx/command_line/start_binary_bundle.py' adding 'libtbx/command_line/start_process.py' adding 'libtbx/command_line/wait_for_file.py' adding 'libtbx/development/__init__.py' adding 'libtbx/development/except_Exception.py' adding 'libtbx/development/timers.py' adding 'libtbx/development/xcode_build_phase.py' adding 'libtbx/langchain/__init__.py' adding 'libtbx/langchain/phenix_knowledge.py' adding 'libtbx/langchain/run_build_db.py' adding 'libtbx/langchain/run_inspect_db.py' adding 'libtbx/langchain/run_query_docs.py' adding 'libtbx/langchain/agent/__init__.py' adding 'libtbx/langchain/agent/advice_preprocessor.py' adding 'libtbx/langchain/agent/api_client.py' adding 'libtbx/langchain/agent/best_files_tracker.py' adding 'libtbx/langchain/agent/command_builder.py' adding 'libtbx/langchain/agent/command_postprocessor.py' adding 'libtbx/langchain/agent/config_loader.py' adding 'libtbx/langchain/agent/contract.py' adding 'libtbx/langchain/agent/directive_extractor.py' adding 'libtbx/langchain/agent/directive_validator.py' adding 'libtbx/langchain/agent/display_data_model.py' adding 'libtbx/langchain/agent/docs_tools.py' adding 'libtbx/langchain/agent/dry_run_manager.py' adding 'libtbx/langchain/agent/error_analyzer.py' adding 'libtbx/langchain/agent/error_classifier.py' adding 'libtbx/langchain/agent/event_formatter.py' adding 'libtbx/langchain/agent/event_log.py' adding 'libtbx/langchain/agent/failure_diagnoser.py' adding 'libtbx/langchain/agent/file_metadata.py' adding 'libtbx/langchain/agent/file_utils.py' adding 'libtbx/langchain/agent/format_validation.py' adding 'libtbx/langchain/agent/gate_evaluator.py' adding 'libtbx/langchain/agent/generate_logic_doc.py' adding 'libtbx/langchain/agent/generate_safety_docs.py' adding 'libtbx/langchain/agent/graph.py' adding 'libtbx/langchain/agent/graph_nodes.py' adding 'libtbx/langchain/agent/graph_state.py' adding 'libtbx/langchain/agent/hypothesis_evaluator.py' adding 'libtbx/langchain/agent/intent_classifier.py' adding 'libtbx/langchain/agent/kb_tags.py' adding 'libtbx/langchain/agent/log_section_extractor.py' adding 'libtbx/langchain/agent/memory.py' adding 'libtbx/langchain/agent/metric_evaluator.py' adding 'libtbx/langchain/agent/metrics_analyzer.py' adding 'libtbx/langchain/agent/nl_to_phil.py' adding 'libtbx/langchain/agent/pattern_manager.py' adding 'libtbx/langchain/agent/perceive_checks.py' adding 'libtbx/langchain/agent/phenix_utils.py' adding 'libtbx/langchain/agent/phil_validator.py' adding 'libtbx/langchain/agent/placement_checker.py' adding 'libtbx/langchain/agent/plan_generator.py' adding 'libtbx/langchain/agent/planner.py' adding 'libtbx/langchain/agent/program_registry.py' adding 'libtbx/langchain/agent/program_validator.py' adding 'libtbx/langchain/agent/rate_limit_handler.py' adding 'libtbx/langchain/agent/rules_selector.py' adding 'libtbx/langchain/agent/sanity_checker.py' adding 'libtbx/langchain/agent/session.py' adding 'libtbx/langchain/agent/session_tools.py' adding 'libtbx/langchain/agent/strategy_memory.py' adding 'libtbx/langchain/agent/structure_model.py' adding 'libtbx/langchain/agent/template_builder.py' adding 'libtbx/langchain/agent/thinking_agent.py' adding 'libtbx/langchain/agent/transport.py' adding 'libtbx/langchain/agent/tst_agent_enhancements.py' adding 'libtbx/langchain/agent/utils.py' adding 'libtbx/langchain/agent/validation_history.py' adding 'libtbx/langchain/agent/validation_inspector.py' adding 'libtbx/langchain/agent/workflow_engine.py' adding 'libtbx/langchain/agent/workflow_state.py' adding 'libtbx/langchain/agent/yaml_tools.py' adding 'libtbx/langchain/analysis/__init__.py' adding 'libtbx/langchain/analysis/agent_session_analyzer.py' adding 'libtbx/langchain/analysis/analyzer.py' adding 'libtbx/langchain/analysis/log_info.py' adding 'libtbx/langchain/analysis/state_extractor.py' adding 'libtbx/langchain/analysis/summarizer.py' adding 'libtbx/langchain/commands/__init__.py' adding 'libtbx/langchain/commands/base.py' adding 'libtbx/langchain/core/__init__.py' adding 'libtbx/langchain/core/llm.py' adding 'libtbx/langchain/core/types.py' adding 'libtbx/langchain/examples/__init__.py' adding 'libtbx/langchain/knowledge/__init__.py' adding 'libtbx/langchain/knowledge/api_schema.py' adding 'libtbx/langchain/knowledge/explanation_prompts.py' adding 'libtbx/langchain/knowledge/html_report_template.py' adding 'libtbx/langchain/knowledge/kb_loader.py' adding 'libtbx/langchain/knowledge/metric_patterns.py' adding 'libtbx/langchain/knowledge/phenix_programs.py' adding 'libtbx/langchain/knowledge/plan_schema.py' adding 'libtbx/langchain/knowledge/plan_template_loader.py' adding 'libtbx/langchain/knowledge/program_registration.py' adding 'libtbx/langchain/knowledge/prompts.py' adding 'libtbx/langchain/knowledge/prompts_hybrid.py' adding 'libtbx/langchain/knowledge/summary_display.py' adding 'libtbx/langchain/knowledge/thinking_prompts.py' adding 'libtbx/langchain/knowledge/yaml_loader.py' adding 'libtbx/langchain/rag/__init__.py' adding 'libtbx/langchain/rag/document_loader.py' adding 'libtbx/langchain/rag/retriever.py' adding 'libtbx/langchain/rag/vector_store.py' adding 'libtbx/langchain/strategies/__init__.py' adding 'libtbx/langchain/strategies/base.py' adding 'libtbx/langchain/tests/__init__.py' adding 'libtbx/langchain/tests/analyze_tutorial_runs.py' adding 'libtbx/langchain/tests/audit_phase_rename.py' adding 'libtbx/langchain/tests/run_all_tests.py' adding 'libtbx/langchain/tests/test_api_keys.py' adding 'libtbx/langchain/tests/tst_abort_message_all_stops.py' adding 'libtbx/langchain/tests/tst_action_item_1.py' adding 'libtbx/langchain/tests/tst_advice_preprocessing.py' adding 'libtbx/langchain/tests/tst_api_schema.py' adding 'libtbx/langchain/tests/tst_audit_fixes.py' adding 'libtbx/langchain/tests/tst_autosol_bugs.py' adding 'libtbx/langchain/tests/tst_backward_compat.py' adding 'libtbx/langchain/tests/tst_best_files_tracker.py' adding 'libtbx/langchain/tests/tst_command_builder.py' adding 'libtbx/langchain/tests/tst_contract_compliance.py' adding 'libtbx/langchain/tests/tst_copies_tracking.py' adding 'libtbx/langchain/tests/tst_decision_flow.py' adding 'libtbx/langchain/tests/tst_diagnosed_failure_stop.py' adding 'libtbx/langchain/tests/tst_directive_extractor.py' adding 'libtbx/langchain/tests/tst_directive_validator.py' adding 'libtbx/langchain/tests/tst_directives_integration.py' adding 'libtbx/langchain/tests/tst_display_data_model.py' adding 'libtbx/langchain/tests/tst_docs_tools.py' adding 'libtbx/langchain/tests/tst_dry_run.py' adding 'libtbx/langchain/tests/tst_error_analyzer.py' adding 'libtbx/langchain/tests/tst_error_classifier.py' adding 'libtbx/langchain/tests/tst_event_formatter_file_categories.py' adding 'libtbx/langchain/tests/tst_event_system.py' adding 'libtbx/langchain/tests/tst_explanation_prompts.py' adding 'libtbx/langchain/tests/tst_fabricated_stop_condition.py' adding 'libtbx/langchain/tests/tst_file_categorization.py' adding 'libtbx/langchain/tests/tst_file_utils.py' adding 'libtbx/langchain/tests/tst_fix_verification.py' adding 'libtbx/langchain/tests/tst_gate_evaluator.py' adding 'libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py' adding 'libtbx/langchain/tests/tst_hardcoded_cleanup.py' adding 'libtbx/langchain/tests/tst_history_analysis.py' adding 'libtbx/langchain/tests/tst_hypothesis_evaluator.py' adding 'libtbx/langchain/tests/tst_integration.py' adding 'libtbx/langchain/tests/tst_intent_classifier.py' adding 'libtbx/langchain/tests/tst_langchain_tools.py' adding 'libtbx/langchain/tests/tst_log_extractor.py' adding 'libtbx/langchain/tests/tst_metric_patterns.py' adding 'libtbx/langchain/tests/tst_metrics_analyzer.py' adding 'libtbx/langchain/tests/tst_mtz_crosscheck.py' adding 'libtbx/langchain/tests/tst_mtz_phases_session_blocking.py' adding 'libtbx/langchain/tests/tst_n_bugs.py' adding 'libtbx/langchain/tests/tst_new_programs.py' adding 'libtbx/langchain/tests/tst_old_client_compat.py' adding 'libtbx/langchain/tests/tst_pattern_manager.py' adding 'libtbx/langchain/tests/tst_perceive_stop_checks.py' adding 'libtbx/langchain/tests/tst_phase0_static_audit.py' adding 'libtbx/langchain/tests/tst_phase1_contract_gaps.py' adding 'libtbx/langchain/tests/tst_phase2_path_consistency.py' adding 'libtbx/langchain/tests/tst_phase3_bug5.py' adding 'libtbx/langchain/tests/tst_phase3_serialization_symmetry.py' adding 'libtbx/langchain/tests/tst_phase4_history_flags.py' adding 'libtbx/langchain/tests/tst_phase5_error_classification.py' adding 'libtbx/langchain/tests/tst_phase6_category_consumer.py' adding 'libtbx/langchain/tests/tst_phase7_routing_simulation.py' adding 'libtbx/langchain/tests/tst_phase8_command_building.py' adding 'libtbx/langchain/tests/tst_phase9_llm_perturbation.py' adding 'libtbx/langchain/tests/tst_phaser_multimodel.py' adding 'libtbx/langchain/tests/tst_phil_validation.py' adding 'libtbx/langchain/tests/tst_plan_generator.py' adding 'libtbx/langchain/tests/tst_plan_schema.py' adding 'libtbx/langchain/tests/tst_program_registration.py' adding 'libtbx/langchain/tests/tst_sanity_checker.py' adding 'libtbx/langchain/tests/tst_scenario_tracer.py' adding 'libtbx/langchain/tests/tst_session_directives.py' adding 'libtbx/langchain/tests/tst_session_summary.py' adding 'libtbx/langchain/tests/tst_session_tools.py' adding 'libtbx/langchain/tests/tst_shared_code_imports.py' adding 'libtbx/langchain/tests/tst_silent_stop_abort_messages.py' adding 'libtbx/langchain/tests/tst_state_serialization.py' adding 'libtbx/langchain/tests/tst_stop_condition_fix.py' adding 'libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py' adding 'libtbx/langchain/tests/tst_stop_reason_codes.py' adding 'libtbx/langchain/tests/tst_stop_reason_prompt.py' adding 'libtbx/langchain/tests/tst_strategy_memory.py' adding 'libtbx/langchain/tests/tst_structure_model.py' adding 'libtbx/langchain/tests/tst_summary_display.py' adding 'libtbx/langchain/tests/tst_template.py' adding 'libtbx/langchain/tests/tst_thinking_agent.py' adding 'libtbx/langchain/tests/tst_thinking_defense.py' adding 'libtbx/langchain/tests/tst_transport.py' adding 'libtbx/langchain/tests/tst_utils.py' adding 'libtbx/langchain/tests/tst_v112_13_fixes.py' adding 'libtbx/langchain/tests/tst_validate_file_overrides.py' adding 'libtbx/langchain/tests/tst_validation_history.py' adding 'libtbx/langchain/tests/tst_workflow_complete_stop.py' adding 'libtbx/langchain/tests/tst_workflow_state.py' adding 'libtbx/langchain/tests/tst_yaml_config.py' adding 'libtbx/langchain/tests/tst_yaml_tools.py' adding 'libtbx/langchain/tests/integration/__init__.py' adding 'libtbx/langchain/utils/__init__.py' adding 'libtbx/langchain/utils/query.py' adding 'libtbx/langchain/utils/run_utils.py' adding 'libtbx/langchain/utils/text_processing.py' adding 'libtbx/langchain/validation/__init__.py' adding 'libtbx/langchain/validation/base.py' adding 'libtbx/langchain/validation/core_validator.py' adding 'libtbx/langchain/validation/mtz_utils.py' adding 'libtbx/langchain/validation/phenix_refine.py' adding 'libtbx/langchain/validation/registry.py' adding 'libtbx/phil/__init__.py' adding 'libtbx/phil/command_line.py' adding 'libtbx/phil/experimental.py' adding 'libtbx/phil/gui_objects.py' adding 'libtbx/phil/interface.py' adding 'libtbx/phil/parser.py' adding 'libtbx/phil/tokenizer.py' adding 'libtbx/phil/tst.py' adding 'libtbx/phil/tst_experimental.py' adding 'libtbx/phil/tst_interface.py' adding 'libtbx/phil/tst_tokenizer.py' adding 'libtbx/program_utils/__init__.py' adding 'libtbx/program_utils/result.py' adding 'libtbx/program_utils/statistics_info.py' adding 'libtbx/queuing_system_utils/__init__.py' adding 'libtbx/queuing_system_utils/communication.py' adding 'libtbx/queuing_system_utils/generic.py' adding 'libtbx/queuing_system_utils/looping.py' adding 'libtbx/queuing_system_utils/lsf.py' adding 'libtbx/queuing_system_utils/pbs_utils.py' adding 'libtbx/queuing_system_utils/remote.py' adding 'libtbx/queuing_system_utils/scheduling.py' adding 'libtbx/queuing_system_utils/scheduling_helpers.py' adding 'libtbx/queuing_system_utils/sge_utils.py' adding 'libtbx/queuing_system_utils/tst.py' adding 'libtbx/queuing_system_utils/processing/__init__.py' adding 'libtbx/queuing_system_utils/processing/errors.py' adding 'libtbx/queuing_system_utils/processing/polling.py' adding 'libtbx/queuing_system_utils/processing/status.py' adding 'libtbx/queuing_system_utils/processing/submission.py' adding 'libtbx/queuing_system_utils/processing/transfer.py' adding 'libtbx/queuing_system_utils/processing/util.py' adding 'libtbx/scheduling/__init__.py' adding 'libtbx/scheduling/cluster_handler.py' adding 'libtbx/scheduling/file_queue.py' adding 'libtbx/scheduling/job_scheduler.py' adding 'libtbx/scheduling/mainthread.py' adding 'libtbx/scheduling/mp_handler.py' adding 'libtbx/scheduling/parallel_for.py' adding 'libtbx/scheduling/philgen.py' adding 'libtbx/scheduling/process_pool.py' adding 'libtbx/scheduling/result.py' adding 'libtbx/scheduling/shared_resource.py' adding 'libtbx/scheduling/socket_queue.py' adding 'libtbx/scheduling/stacktrace.py' adding 'libtbx/scheduling/thread_handler.py' adding 'libtbx/server/FileClient.py' adding 'libtbx/server/FileServer.py' adding 'libtbx/server/FileSocket.py' adding 'libtbx/server/SocketServer.py' adding 'libtbx/server/StartServer.py' adding 'libtbx/server/__init__.py' adding 'libtbx/sphinx/__init__.py' adding 'libtbx/sphinx/phil.py' adding 'libtbx/sphinx/pubmed.py' adding 'libtbx/sphinx/python_string.py' adding 'libtbx/test_utils/__init__.py' adding 'libtbx/test_utils/parallel.py' adding 'mmtbx/__init__.py' adding 'mmtbx/arrays.py' adding 'mmtbx/clashes.py' adding 'mmtbx/domains_from_pae.py' adding 'mmtbx/f_model_info.py' adding 'mmtbx/find_peaks.py' adding 'mmtbx/grow_density.py' adding 'mmtbx/invariant_domain.py' adding 'mmtbx/lattice.py' adding 'mmtbx/libtbx_refresh.py' adding 'mmtbx/map_tools.py' adding 'mmtbx/model_vs_data.py' adding 'mmtbx/msa.py' adding 'mmtbx/pdb_distances.py' adding 'mmtbx/pdb_symmetry.py' adding 'mmtbx/pdbtools.py' adding 'mmtbx/process_predicted_model.py' adding 'mmtbx/proq2.py' adding 'mmtbx/real_space_correlation.py' adding 'mmtbx/resolve_resources.py' adding 'mmtbx/restraints.py' adding 'mmtbx/run_tests.py' adding 'mmtbx/superpose.py' adding 'mmtbx/xmanip.py' adding 'mmtbx/xmanip_tasks.py' adding 'mmtbx/alignment/__init__.py' adding 'mmtbx/atomic_environment_vectors/__init__.py' adding 'mmtbx/atomic_environment_vectors/tst.py' adding 'mmtbx/building/__init__.py' adding 'mmtbx/building/cablam_idealization.py' adding 'mmtbx/building/extend_sidechains.py' adding 'mmtbx/building/loop_idealization.py' adding 'mmtbx/building/merge_models.py' adding 'mmtbx/building/minimize_chain.py' adding 'mmtbx/building/tst_extend_sidechains.py' adding 'mmtbx/building/tst_extend_sidechains_2.py' adding 'mmtbx/building/ligands/__init__.py' adding 'mmtbx/building/ligands/lifi.py' adding 'mmtbx/building/ligands/tst_00.py' adding 'mmtbx/building/loop_closure/__init__.py' adding 'mmtbx/building/loop_closure/berkeley_ramalyze.py' adding 'mmtbx/building/loop_closure/ccd.py' adding 'mmtbx/building/loop_closure/starting_conformations.py' adding 'mmtbx/building/loop_closure/utils.py' adding 'mmtbx/bulk_solvent/__init__.py' adding 'mmtbx/bulk_solvent/bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/example.py' adding 'mmtbx/bulk_solvent/example2.py' adding 'mmtbx/bulk_solvent/f_model_all_scales.py' adding 'mmtbx/bulk_solvent/kbu_refinery.py' adding 'mmtbx/bulk_solvent/mosaic.py' adding 'mmtbx/bulk_solvent/multi_mask_bulk_solvent.py' adding 'mmtbx/bulk_solvent/scaler.py' adding 'mmtbx/bulk_solvent/tst_aniso_scaler.py' adding 'mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py' adding 'mmtbx/bulk_solvent/tst_flat_nonuniform.py' adding 'mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py' adding 'mmtbx/bulk_solvent/tst_mosaic.py' adding 'mmtbx/bulk_solvent/tst_scaler.py' adding 'mmtbx/chemical_components/__init__.py' adding 'mmtbx/chemical_components/cif_parser.py' adding 'mmtbx/chemical_components/tst.py' adding 'mmtbx/command_line/__init__.py' adding 'mmtbx/command_line/altloc_remediate.py' adding 'mmtbx/command_line/angle.py' adding 'mmtbx/command_line/apply_ncs_to_ligand.py' adding 'mmtbx/command_line/arginine_geometry.py' adding 'mmtbx/command_line/atom_valence_simple.py' adding 'mmtbx/command_line/barbed_wire_analysis.py' adding 'mmtbx/command_line/cablam.py' adding 'mmtbx/command_line/cablam_idealization.py' adding 'mmtbx/command_line/cbetadev.py' adding 'mmtbx/command_line/cc_star.py' adding 'mmtbx/command_line/chiral_validation.py' adding 'mmtbx/command_line/cif_as_mtz.py' adding 'mmtbx/command_line/clashscore.py' adding 'mmtbx/command_line/clashscore2.py' adding 'mmtbx/command_line/comparama.py' adding 'mmtbx/command_line/debug_riding.py' adding 'mmtbx/command_line/density_modification.py' adding 'mmtbx/command_line/development_aev.py' adding 'mmtbx/command_line/development_fem.py' adding 'mmtbx/command_line/distance_difference.py' adding 'mmtbx/command_line/dynamics.py' adding 'mmtbx/command_line/electrons.py' adding 'mmtbx/command_line/emringer.py' adding 'mmtbx/command_line/emringer_score.py' adding 'mmtbx/command_line/estimate_bijvoet_ratio.py' adding 'mmtbx/command_line/f000.py' adding 'mmtbx/command_line/fab_elbow_angle.py' adding 'mmtbx/command_line/fake_f_obs.py' adding 'mmtbx/command_line/fetch_pdb.py' adding 'mmtbx/command_line/find_peaks_holes.py' adding 'mmtbx/command_line/find_residue_in_pdb.py' adding 'mmtbx/command_line/find_tls_groups.py' adding 'mmtbx/command_line/fmodel.py' adding 'mmtbx/command_line/fobs_minus_fobs_map.py' adding 'mmtbx/command_line/geometry_minimization.py' adding 'mmtbx/command_line/grow_density.py' adding 'mmtbx/command_line/hbond.py' adding 'mmtbx/command_line/helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/command_line/holton_geometry_validation.py' adding 'mmtbx/command_line/hydrogenate.py' adding 'mmtbx/command_line/kinemage.py' adding 'mmtbx/command_line/ligand_restraints_validation.py' adding 'mmtbx/command_line/map_box.py' adding 'mmtbx/command_line/map_comparison.py' adding 'mmtbx/command_line/map_to_model_histogram.py' adding 'mmtbx/command_line/map_to_structure_factors.py' adding 'mmtbx/command_line/maps.py' adding 'mmtbx/command_line/mask.py' adding 'mmtbx/command_line/massage_data.py' adding 'mmtbx/command_line/matthews.py' adding 'mmtbx/command_line/maximum_entropy_map.py' adding 'mmtbx/command_line/model_idealization.py' adding 'mmtbx/command_line/model_map.py' adding 'mmtbx/command_line/model_model_distances.py' adding 'mmtbx/command_line/model_vs_data.py' adding 'mmtbx/command_line/model_vs_map.py' adding 'mmtbx/command_line/model_vs_sequence.py' adding 'mmtbx/command_line/models_as_chains.py' adding 'mmtbx/command_line/molprobity.py' adding 'mmtbx/command_line/mon_lib_cif_triage.py' adding 'mmtbx/command_line/mp_geo.py' adding 'mmtbx/command_line/mp_validate_bonds.py' adding 'mmtbx/command_line/mtz2map.py' adding 'mmtbx/command_line/next_gen_atom_typing.py' adding 'mmtbx/command_line/nonbonded_overlaps.py' adding 'mmtbx/command_line/omegalyze.py' adding 'mmtbx/command_line/pdb_atom_selection.py' adding 'mmtbx/command_line/pdb_interpretation.py' adding 'mmtbx/command_line/pdbtools.py' adding 'mmtbx/command_line/perigee.py' adding 'mmtbx/command_line/plan_sad_experiment.py' adding 'mmtbx/command_line/polder.py' adding 'mmtbx/command_line/prepare_pdb_deposition.py' adding 'mmtbx/command_line/probe2.py' adding 'mmtbx/command_line/probescore_ligand.py' adding 'mmtbx/command_line/process_predicted_model.py' adding 'mmtbx/command_line/prune_model.py' adding 'mmtbx/command_line/quantum_interface.py' adding 'mmtbx/command_line/r_factor_statistics.py' adding 'mmtbx/command_line/rama_z.py' adding 'mmtbx/command_line/ramalyze.py' adding 'mmtbx/command_line/rank_scale_map.py' adding 'mmtbx/command_line/real_space_correlation.py' adding 'mmtbx/command_line/real_space_diff_map.py' adding 'mmtbx/command_line/rebuild_cablam_cache.py' adding 'mmtbx/command_line/rebuild_rotarama_cache.py' adding 'mmtbx/command_line/reciprocal_space_arrays.py' adding 'mmtbx/command_line/reduce2.py' adding 'mmtbx/command_line/reduce_cryoem_resolution.py' adding 'mmtbx/command_line/refine_anomalous_substructure.py' adding 'mmtbx/command_line/remove_outliers.py' adding 'mmtbx/command_line/ribbons.py' adding 'mmtbx/command_line/rigid_bond_test.py' adding 'mmtbx/command_line/ringer.py' adding 'mmtbx/command_line/rna_validate.py' adding 'mmtbx/command_line/rna_validate_bonds.py' adding 'mmtbx/command_line/rna_validate_puckers.py' adding 'mmtbx/command_line/rna_validate_suites.py' adding 'mmtbx/command_line/rotalyze.py' adding 'mmtbx/command_line/search_pdb_symmetry.py' adding 'mmtbx/command_line/secondary_structure_restraints.py' adding 'mmtbx/command_line/secondary_structure_validation.py' adding 'mmtbx/command_line/select_best_starting_model.py' adding 'mmtbx/command_line/show_r_factors_by_shell.py' adding 'mmtbx/command_line/sisa.py' adding 'mmtbx/command_line/sort_hetatms.py' adding 'mmtbx/command_line/ss_idealization.py' adding 'mmtbx/command_line/suitename.py' adding 'mmtbx/command_line/suitename_old.py' adding 'mmtbx/command_line/super.py' adding 'mmtbx/command_line/superpose.py' adding 'mmtbx/command_line/taam_minus_iam.py' adding 'mmtbx/command_line/table_one.py' adding 'mmtbx/command_line/tls.py' adding 'mmtbx/command_line/tls_analysis.py' adding 'mmtbx/command_line/tls_as_xyz.py' adding 'mmtbx/command_line/undowser.py' adding 'mmtbx/command_line/undowser2.py' adding 'mmtbx/command_line/validate_H_cl_app.py' adding 'mmtbx/command_line/validate_ligands.py' adding 'mmtbx/command_line/validation_summary.py' adding 'mmtbx/command_line/verify_mon_lib_data.py' adding 'mmtbx/command_line/water_b_factors.py' adding 'mmtbx/command_line/where_is_that_cif_file.py' adding 'mmtbx/command_line/xmanip.py' adding 'mmtbx/command_line/xtrapol8.py' adding 'mmtbx/command_line/xtriage.py' adding 'mmtbx/conformation_dependent_library/LinkedResidues.py' adding 'mmtbx/conformation_dependent_library/__init__.py' adding 'mmtbx/conformation_dependent_library/altloc_weighting.py' adding 'mmtbx/conformation_dependent_library/bond_angle_registry.py' adding 'mmtbx/conformation_dependent_library/cdl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_setup.py' adding 'mmtbx/conformation_dependent_library/cdl_svl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_utils.py' adding 'mmtbx/conformation_dependent_library/check_cdl_database.py' adding 'mmtbx/conformation_dependent_library/density_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/enol_peptide_restraints.py' adding 'mmtbx/conformation_dependent_library/histidines.py' adding 'mmtbx/conformation_dependent_library/hpdl_database.py' adding 'mmtbx/conformation_dependent_library/hydrogen_bonding.py' adding 'mmtbx/conformation_dependent_library/investigate_rotamer_space.py' adding 'mmtbx/conformation_dependent_library/mcl.py' adding 'mmtbx/conformation_dependent_library/mcl_sf4_coordination.py' adding 'mmtbx/conformation_dependent_library/metal_coordination_library.py' adding 'mmtbx/conformation_dependent_library/multi_base_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_cdl_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_class.py' adding 'mmtbx/conformation_dependent_library/nucleotides.py' adding 'mmtbx/conformation_dependent_library/omega.py' adding 'mmtbx/conformation_dependent_library/omega_database.py' adding 'mmtbx/conformation_dependent_library/pH_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/rdl_database.py' adding 'mmtbx/conformation_dependent_library/rotamers.py' adding 'mmtbx/conformation_dependent_library/sf4_restraints.py' adding 'mmtbx/conformation_dependent_library/testing_utils.py' adding 'mmtbx/conformation_dependent_library/tst_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_esd.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py' adding 'mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py' adding 'mmtbx/conformation_dependent_library/tst_enol_peptide.py' adding 'mmtbx/conformation_dependent_library/tst_hpdl.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_01.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_02.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_03.py' adding 'mmtbx/conformation_dependent_library/tst_multi_residue_rna.py' adding 'mmtbx/conformation_dependent_library/tst_mutli_residue.py' adding 'mmtbx/conformation_dependent_library/tst_omega_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_pH_mechanism.py' adding 'mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py' adding 'mmtbx/conformation_dependent_library/tst_rdl.py' adding 'mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py' adding 'mmtbx/conformation_dependent_library/utils.py' adding 'mmtbx/den/__init__.py' adding 'mmtbx/den/plot_weights.py' adding 'mmtbx/den/refinement.py' adding 'mmtbx/density_modification/__init__.py' adding 'mmtbx/density_modification/tst_density_modification.py' adding 'mmtbx/disorder/__init__.py' adding 'mmtbx/disorder/analyze_model.py' adding 'mmtbx/disorder/backbone.py' adding 'mmtbx/disorder/tst.py' adding 'mmtbx/disorder/tst_analyze_model.py' adding 'mmtbx/disorder/tst_backbone.py' adding 'mmtbx/dynamics/__init__.py' adding 'mmtbx/dynamics/cartesian_dynamics.py' adding 'mmtbx/dynamics/constants.py' adding 'mmtbx/dynamics/ensemble_cd.py' adding 'mmtbx/dynamics/simulated_annealing.py' adding 'mmtbx/dynamics/tst_cartesian_dynamics.py' adding 'mmtbx/dynamics/tst_sa.py' adding 'mmtbx/f_model/__init__.py' adding 'mmtbx/f_model/f_model.py' adding 'mmtbx/f_model/f_model_info.py' adding 'mmtbx/geometry/__init__.py' adding 'mmtbx/geometry/altloc.py' adding 'mmtbx/geometry/asa.py' adding 'mmtbx/geometry/clash.py' adding 'mmtbx/geometry/indexing.py' adding 'mmtbx/geometry/shared_types.py' adding 'mmtbx/geometry/sphere_surface_sampling.py' adding 'mmtbx/geometry/topology.py' adding 'mmtbx/geometry_restraints/__init__.py' adding 'mmtbx/geometry_restraints/afitt.py' adding 'mmtbx/geometry_restraints/base_qm_manager.py' adding 'mmtbx/geometry_restraints/c_beta.py' adding 'mmtbx/geometry_restraints/external.py' adding 'mmtbx/geometry_restraints/geo_file_parsing.py' adding 'mmtbx/geometry_restraints/mopac_manager.py' adding 'mmtbx/geometry_restraints/orca_manager.py' adding 'mmtbx/geometry_restraints/qi_utils.py' adding 'mmtbx/geometry_restraints/qm_manager.py' adding 'mmtbx/geometry_restraints/quantum_interface.py' adding 'mmtbx/geometry_restraints/quantum_restraints_manager.py' adding 'mmtbx/geometry_restraints/ramachandran.py' adding 'mmtbx/geometry_restraints/reference.py' adding 'mmtbx/geometry_restraints/tst_c_beta_restraints.py' adding 'mmtbx/geometry_restraints/tst_geo_file_parsing.py' adding 'mmtbx/geometry_restraints/tst_manager.py' adding 'mmtbx/geometry_restraints/tst_ramachandran.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate2.py' adding 'mmtbx/geometry_restraints/torsion_restraints/__init__.py' adding 'mmtbx/geometry_restraints/torsion_restraints/reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py' adding 'mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/utils.py' adding 'mmtbx/hydrogens/__init__.py' adding 'mmtbx/hydrogens/build_hydrogens.py' adding 'mmtbx/hydrogens/connectivity.py' adding 'mmtbx/hydrogens/find.py' adding 'mmtbx/hydrogens/neutron_utils.py' adding 'mmtbx/hydrogens/parameterization.py' adding 'mmtbx/hydrogens/reduce_hydrogen.py' adding 'mmtbx/hydrogens/riding.py' adding 'mmtbx/hydrogens/specialised_hydrogen_atoms.py' adding 'mmtbx/hydrogens/tst.py' adding 'mmtbx/hydrogens/tst_add_hydrogen.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_0.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_1.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_2.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_3.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_4.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_5.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_6.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_7.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_8.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_9.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_time.py' adding 'mmtbx/hydrogens/tst_connectivity.py' adding 'mmtbx/hydrogens/tst_parameterization_1.py' adding 'mmtbx/hydrogens/tst_parameterization_2.py' adding 'mmtbx/hydrogens/tst_parameterization_3.py' adding 'mmtbx/hydrogens/tst_parameterization_4.py' adding 'mmtbx/hydrogens/tst_parameterization_5.py' adding 'mmtbx/hydrogens/tst_parameterization_6.py' adding 'mmtbx/hydrogens/tst_parameterization_7.py' adding 'mmtbx/hydrogens/tst_parameterization_8.py' adding 'mmtbx/hydrogens/tst_parameterization_9.py' adding 'mmtbx/hydrogens/tst_riding_coefficients.py' adding 'mmtbx/hydrogens/tst_riding_fd_1.py' adding 'mmtbx/hydrogens/tst_riding_fd_2.py' adding 'mmtbx/hydrogens/tst_riding_fd_3.py' adding 'mmtbx/hydrogens/tst_riding_fd_4.py' adding 'mmtbx/hydrogens/tst_riding_fd_5.py' adding 'mmtbx/hydrogens/tst_riding_manager.py' adding 'mmtbx/hydrogens/tst_riding_minimize.py' adding 'mmtbx/hydrogens/tst_validate_H.py' adding 'mmtbx/hydrogens/validate_H.py' adding 'mmtbx/ias/__init__.py' adding 'mmtbx/ias/tst_ias.py' adding 'mmtbx/idealized_aa_residues/__init__.py' adding 'mmtbx/idealized_aa_residues/all_his.py' adding 'mmtbx/idealized_aa_residues/rotamer_manager.py' adding 'mmtbx/idealized_aa_residues/sample_rotamers.py' adding 'mmtbx/idealized_aa_residues/tst.py' adding 'mmtbx/ions/__init__.py' adding 'mmtbx/ions/build.py' adding 'mmtbx/ions/environment.py' adding 'mmtbx/ions/geometry.py' adding 'mmtbx/ions/halides.py' adding 'mmtbx/ions/identify.py' adding 'mmtbx/ions/tst_environment.py' adding 'mmtbx/ions/tst_geometries.py' adding 'mmtbx/ions/tst_parameters.py' adding 'mmtbx/ions/tst_pick_approx_zn.py' adding 'mmtbx/ions/tst_pick_ca.py' adding 'mmtbx/ions/tst_pick_ca_svm.py' adding 'mmtbx/ions/tst_pick_k.py' adding 'mmtbx/ions/tst_pick_mg.py' adding 'mmtbx/ions/tst_pickle.py' adding 'mmtbx/ions/tst_symmetry_axis.py' adding 'mmtbx/ions/tst_utils.py' adding 'mmtbx/ions/tst_validate_ca.py' adding 'mmtbx/ions/tst_validate_mg.py' adding 'mmtbx/ions/utils.py' adding 'mmtbx/ions/svm/__init__.py' adding 'mmtbx/ions/svm/dump_sites.py' adding 'mmtbx/ions/svm/tst_classifier_01.py' adding 'mmtbx/ions/svm/tst_classifier_02.py' adding 'mmtbx/ions/svm/utils.py' adding 'mmtbx/kinemage/__init__.py' adding 'mmtbx/kinemage/nrubs.py' adding 'mmtbx/kinemage/ribbons.py' adding 'mmtbx/kinemage/validation.py' adding 'mmtbx/ligands/__init__.py' adding 'mmtbx/ligands/chemistry.py' adding 'mmtbx/ligands/elbow_utils.py' adding 'mmtbx/ligands/electrons.py' adding 'mmtbx/ligands/hierarchy_utils.py' adding 'mmtbx/ligands/rdkit_utils.py' adding 'mmtbx/ligands/ready_set_basics.py' adding 'mmtbx/ligands/ready_set_utils.py' adding 'mmtbx/ligands/tst_electron_scripting.py' adding 'mmtbx/ligands/tst_ready_set_utils.py' adding 'mmtbx/ligands/tst_xtal_screens.py' adding 'mmtbx/ligands/xtal_screens.py' adding 'mmtbx/maps/__init__.py' adding 'mmtbx/maps/composite_omit_map.py' adding 'mmtbx/maps/correlation.py' adding 'mmtbx/maps/fem.py' adding 'mmtbx/maps/fobs_minus_fobs_map.py' adding 'mmtbx/maps/kick.py' adding 'mmtbx/maps/map_model_cc.py' adding 'mmtbx/maps/mtriage.py' adding 'mmtbx/maps/polder.py' adding 'mmtbx/maps/superpose.py' adding 'mmtbx/maps/tst_composite_omit_map.py' adding 'mmtbx/maps/tst_composite_omit_map_2.py' adding 'mmtbx/maps/tst_composite_omit_map_3.py' adding 'mmtbx/maps/tst_correlation.py' adding 'mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py' adding 'mmtbx/maps/utils.py' adding 'mmtbx/maps/xtrapol8.py' adding 'mmtbx/masks/__init__.py' adding 'mmtbx/masks/tst_asu_mask.py' adding 'mmtbx/masks/tst_masks.py' adding 'mmtbx/max_lik/__init__.py' adding 'mmtbx/max_lik/max_like_non_uniform.py' adding 'mmtbx/max_lik/maxlik.py' adding 'mmtbx/max_lik/tst_max_lik.py' adding 'mmtbx/max_lik/tst_maxlik.py' adding 'mmtbx/model/__init__.py' adding 'mmtbx/model/model.py' adding 'mmtbx/model/restraints.py' adding 'mmtbx/model/statistics.py' adding 'mmtbx/model/utils.py' adding 'mmtbx/monomer_library/__init__.py' adding 'mmtbx/monomer_library/bondlength_defaults.py' adding 'mmtbx/monomer_library/cif_triage.py' adding 'mmtbx/monomer_library/cif_types.py' adding 'mmtbx/monomer_library/conformation_dependent_restraints.py' adding 'mmtbx/monomer_library/conv_v2_v3.py' adding 'mmtbx/monomer_library/correct_hydrogen_geometries.py' adding 'mmtbx/monomer_library/geostd_utils.py' adding 'mmtbx/monomer_library/glyco_chiral_values.py' adding 'mmtbx/monomer_library/glyco_utils.py' adding 'mmtbx/monomer_library/hydrogen_restrictions.py' adding 'mmtbx/monomer_library/idealized_aa.py' adding 'mmtbx/monomer_library/linking_mixins.py' adding 'mmtbx/monomer_library/linking_setup.py' adding 'mmtbx/monomer_library/linking_utils.py' adding 'mmtbx/monomer_library/mmtbx_utils.py' adding 'mmtbx/monomer_library/pdb_interpretation.py' adding 'mmtbx/monomer_library/populate_auto_linking_origin_ids.py' adding 'mmtbx/monomer_library/rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/rotamer_utils.py' adding 'mmtbx/monomer_library/server.py' adding 'mmtbx/monomer_library/tst_all_cif_files.py' adding 'mmtbx/monomer_library/tst_carbo_linking.py' adding 'mmtbx/monomer_library/tst_chg.py' adding 'mmtbx/monomer_library/tst_cif_triage.py' adding 'mmtbx/monomer_library/tst_cif_types.py' adding 'mmtbx/monomer_library/tst_correct_hydrogens.py' adding 'mmtbx/monomer_library/tst_deuterium_terminii.py' adding 'mmtbx/monomer_library/tst_geo_reduce_for_tardy.py' adding 'mmtbx/monomer_library/tst_glyco_coordination.py' adding 'mmtbx/monomer_library/tst_glyco_hand.py' adding 'mmtbx/monomer_library/tst_idealized_aa.py' adding 'mmtbx/monomer_library/tst_iron_sulfur_clusters.py' adding 'mmtbx/monomer_library/tst_linking.py' adding 'mmtbx/monomer_library/tst_metal_coordination.py' adding 'mmtbx/monomer_library/tst_motif.py' adding 'mmtbx/monomer_library/tst_neutron_distance.py' adding 'mmtbx/monomer_library/tst_paral_geo.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_2.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_3.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_4.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_5.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py' adding 'mmtbx/monomer_library/tst_protein_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_dna_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/tst_rotamer_utils.py' adding 'mmtbx/monomer_library/tst_selection.py' adding 'mmtbx/monomer_library/tst_server.py' adding 'mmtbx/monomer_library/tst_superpose_ideal.py' adding 'mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py' adding 'mmtbx/monomer_library/tst_user_supplied_library.py' adding 'mmtbx/nci/__init__.py' adding 'mmtbx/nci/data_filtering.py' adding 'mmtbx/nci/hbond.py' adding 'mmtbx/nci/skew_kurt_plot.py' adding 'mmtbx/nci/tst_hbond.py' adding 'mmtbx/ncs/__init__.py' adding 'mmtbx/ncs/cartesian_restraints.py' adding 'mmtbx/ncs/ligands.py' adding 'mmtbx/ncs/ncs.py' adding 'mmtbx/ncs/ncs_params.py' adding 'mmtbx/ncs/ncs_restraints_group_list.py' adding 'mmtbx/ncs/ncs_search.py' adding 'mmtbx/ncs/ncs_utils.py' adding 'mmtbx/ncs/tncs.py' adding 'mmtbx/pair_interaction/__init__.py' adding 'mmtbx/pair_interaction/pair_interaction.py' adding 'mmtbx/pair_interaction/tst_00.py' adding 'mmtbx/pair_interaction/tst_01.py' adding 'mmtbx/pair_interaction/tst_02.py' adding 'mmtbx/pair_interaction/tst_03.py' adding 'mmtbx/pair_interaction/tst_04.py' adding 'mmtbx/pair_interaction/tst_05.py' adding 'mmtbx/polygon/__init__.py' adding 'mmtbx/polygon/output.py' adding 'mmtbx/polygon/tst.py' adding 'mmtbx/polygon/tst_gui.py' adding 'mmtbx/polygon/tst_polygon_data.py' adding 'mmtbx/probe/AtomTypes.py' adding 'mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py' adding 'mmtbx/probe/Helpers.py' adding 'mmtbx/probe/__init__.py' adding 'mmtbx/probe/tst_mmtbx_probe_ext.py' adding 'mmtbx/programs/__init__.py' adding 'mmtbx/programs/arginine_geometry.py' adding 'mmtbx/programs/atom_selection.py' adding 'mmtbx/programs/atom_valence_simple.py' adding 'mmtbx/programs/barbed_wire_analysis.py' adding 'mmtbx/programs/cablam.py' adding 'mmtbx/programs/cablam_idealization.py' adding 'mmtbx/programs/cbetadev.py' adding 'mmtbx/programs/chiral_validation.py' adding 'mmtbx/programs/clashscore.py' adding 'mmtbx/programs/clashscore2.py' adding 'mmtbx/programs/comparama.py' adding 'mmtbx/programs/debug_riding.py' adding 'mmtbx/programs/elbow_services.py' adding 'mmtbx/programs/emringer.py' adding 'mmtbx/programs/fetch.py' adding 'mmtbx/programs/fmodel.py' adding 'mmtbx/programs/hbond.py' adding 'mmtbx/programs/holton_geometry_validation.py' adding 'mmtbx/programs/hydrogenate.py' adding 'mmtbx/programs/ligand_restraints_validation.py' adding 'mmtbx/programs/mask.py' adding 'mmtbx/programs/matthews.py' adding 'mmtbx/programs/model_vs_sequence.py' adding 'mmtbx/programs/mp_validate_bonds.py' adding 'mmtbx/programs/next_gen_atom_typing.py' adding 'mmtbx/programs/nonbonded_overlaps.py' adding 'mmtbx/programs/omegalyze.py' adding 'mmtbx/programs/pdb_as_cif.py' adding 'mmtbx/programs/pdbtools.py' adding 'mmtbx/programs/polder.py' adding 'mmtbx/programs/prepare_pdb_deposition.py' adding 'mmtbx/programs/probe2.py' adding 'mmtbx/programs/probescore_ligand.py' adding 'mmtbx/programs/process_predicted_model.py' adding 'mmtbx/programs/quantum_interface.py' adding 'mmtbx/programs/rama_z.py' adding 'mmtbx/programs/ramalyze.py' adding 'mmtbx/programs/real_space_correlation.py' adding 'mmtbx/programs/reduce2.py' adding 'mmtbx/programs/reduce_cryoem_resolution.py' adding 'mmtbx/programs/ribbons.py' adding 'mmtbx/programs/rna_validate.py' adding 'mmtbx/programs/rna_validate_bonds.py' adding 'mmtbx/programs/rna_validate_puckers.py' adding 'mmtbx/programs/rna_validate_suites.py' adding 'mmtbx/programs/rotalyze.py' adding 'mmtbx/programs/ss_idealization.py' adding 'mmtbx/programs/ss_validation.py' adding 'mmtbx/programs/suitename.py' adding 'mmtbx/programs/suitename_old.py' adding 'mmtbx/programs/taam_minus_iam.py' adding 'mmtbx/programs/undowser.py' adding 'mmtbx/programs/undowser2.py' adding 'mmtbx/programs/validate_ligands.py' adding 'mmtbx/programs/water_b_factors.py' adding 'mmtbx/programs/xtrapol8.py' adding 'mmtbx/real_space/__init__.py' adding 'mmtbx/real_space/tst.py' adding 'mmtbx/reduce/InteractionGraph.py' adding 'mmtbx/reduce/Movers.py' adding 'mmtbx/reduce/Optimizers.py' adding 'mmtbx/reduce/__init__.py' adding 'mmtbx/reduce/tst_mmtbx_reduce_ext.py' adding 'mmtbx/refinement/__init__.py' adding 'mmtbx/refinement/adp_refinement.py' adding 'mmtbx/refinement/anomalous_scatterer_groups.py' adding 'mmtbx/refinement/calculators.py' adding 'mmtbx/refinement/data.py' adding 'mmtbx/refinement/energy_monitor.py' adding 'mmtbx/refinement/flip_peptide_side_chain.py' adding 'mmtbx/refinement/geometry_minimization.py' adding 'mmtbx/refinement/group.py' adding 'mmtbx/refinement/inspect_tardy_trajectory.py' adding 'mmtbx/refinement/minimization.py' adding 'mmtbx/refinement/minimization_monitor.py' adding 'mmtbx/refinement/minimization_ncs_constraints.py' adding 'mmtbx/refinement/occupancies.py' adding 'mmtbx/refinement/orca.py' adding 'mmtbx/refinement/print_statistics.py' adding 'mmtbx/refinement/refinement_flags.py' adding 'mmtbx/refinement/restraints.py' adding 'mmtbx/refinement/rigid_body.py' adding 'mmtbx/refinement/select_best_starting_model.py' adding 'mmtbx/refinement/tardy.py' adding 'mmtbx/refinement/targets.py' adding 'mmtbx/refinement/tst_anomalous_scatterer_groups.py' adding 'mmtbx/refinement/tst_fit_rotamers.py' adding 'mmtbx/refinement/tst_group.py' adding 'mmtbx/refinement/tst_group_2.py' adding 'mmtbx/refinement/tst_misc.py' adding 'mmtbx/refinement/tst_occupancy_selections.py' adding 'mmtbx/refinement/tst_real_space_simple.py' adding 'mmtbx/refinement/tst_refinement_flags.py' adding 'mmtbx/refinement/tst_rigid_body.py' adding 'mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py' adding 'mmtbx/refinement/tst_select_best_starting_model.py' adding 'mmtbx/refinement/utils.py' adding 'mmtbx/refinement/weights.py' adding 'mmtbx/refinement/weights_params.py' adding 'mmtbx/refinement/wrappers.py' adding 'mmtbx/refinement/wx_tardy_pdb.py' adding 'mmtbx/refinement/ensemble_refinement/__init__.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_probability.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_utils.py' adding 'mmtbx/refinement/real_space/__init__.py' adding 'mmtbx/refinement/real_space/adp.py' adding 'mmtbx/refinement/real_space/explode_and_refine.py' adding 'mmtbx/refinement/real_space/fit_his.py' adding 'mmtbx/refinement/real_space/fit_residue.py' adding 'mmtbx/refinement/real_space/fit_residues.py' adding 'mmtbx/refinement/real_space/fit_small_molecule.py' adding 'mmtbx/refinement/real_space/fit_water.py' adding 'mmtbx/refinement/real_space/individual_sites.py' adding 'mmtbx/refinement/real_space/occupancy.py' adding 'mmtbx/refinement/real_space/rigid_body.py' adding 'mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_7.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_selection.py' adding 'mmtbx/refinement/real_space/tst_fit_water.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_1.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_2.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_3.py' adding 'mmtbx/refinement/real_space/tst_monitor.py' adding 'mmtbx/refinement/real_space/tst_rigid_body.py' adding 'mmtbx/refinement/real_space/tst_weight.py' adding 'mmtbx/refinement/real_space/utils.py' adding 'mmtbx/refinement/real_space/weight.py' adding 'mmtbx/regression/__init__.py' adding 'mmtbx/regression/make_fake_anomalous_data.py' adding 'mmtbx/regression/tst_add_arrows_on_plot.py' adding 'mmtbx/regression/tst_add_h_to_water.py' adding 'mmtbx/regression/tst_adp_restraints.py' adding 'mmtbx/regression/tst_alignment.py' adding 'mmtbx/regression/tst_altloc_chain_break.py' adding 'mmtbx/regression/tst_altloc_remediate.py' adding 'mmtbx/regression/tst_angle.py' adding 'mmtbx/regression/tst_anomalous_substructure.py' adding 'mmtbx/regression/tst_apply_cif_restraints.py' adding 'mmtbx/regression/tst_arginine_geometry.py' adding 'mmtbx/regression/tst_cc_star.py' adding 'mmtbx/regression/tst_chain_comparison.py' adding 'mmtbx/regression/tst_chain_comparison_cif.py' adding 'mmtbx/regression/tst_cif_as_mtz_wavelengths.py' adding 'mmtbx/regression/tst_cis_trans_peptide_link.py' adding 'mmtbx/regression/tst_clashes.py' adding 'mmtbx/regression/tst_command_line_input.py' adding 'mmtbx/regression/tst_domains_from_pae.py' adding 'mmtbx/regression/tst_domains_from_pae_cif.py' adding 'mmtbx/regression/tst_dynamics_cli.py' adding 'mmtbx/regression/tst_examples.py' adding 'mmtbx/regression/tst_find_ncs.py' adding 'mmtbx/regression/tst_find_ss_structure.py' adding 'mmtbx/regression/tst_find_ss_structure_cif.py' adding 'mmtbx/regression/tst_flipping_his.py' adding 'mmtbx/regression/tst_fmodel.py' adding 'mmtbx/regression/tst_fmodel_2.py' adding 'mmtbx/regression/tst_fmodel_and_dm.py' adding 'mmtbx/regression/tst_fmodel_fd.py' adding 'mmtbx/regression/tst_fmodel_misc.py' adding 'mmtbx/regression/tst_fmodel_no_cryst1.py' adding 'mmtbx/regression/tst_geo_min_restraints_phil.py' adding 'mmtbx/regression/tst_geometry_minimization.py' adding 'mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/regression/tst_holton_geometry_validation.py' adding 'mmtbx/regression/tst_isomorphous_difference_misc.py' adding 'mmtbx/regression/tst_ligand_ncs.py' adding 'mmtbx/regression/tst_loop_closure.py' adding 'mmtbx/regression/tst_lrv.py' adding 'mmtbx/regression/tst_map_model_cc.py' adding 'mmtbx/regression/tst_map_type_parser.py' adding 'mmtbx/regression/tst_maps_misc.py' adding 'mmtbx/regression/tst_metal_link_1.py' adding 'mmtbx/regression/tst_minimize_chain.py' adding 'mmtbx/regression/tst_ml_estimate.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py' adding 'mmtbx/regression/tst_model_map.py' adding 'mmtbx/regression/tst_model_vs_map.py' adding 'mmtbx/regression/tst_model_vs_sequence.py' adding 'mmtbx/regression/tst_models_to_from_chains.py' adding 'mmtbx/regression/tst_msa.py' adding 'mmtbx/regression/tst_mtz2map.py' adding 'mmtbx/regression/tst_multi_residue_class.py' adding 'mmtbx/regression/tst_origin_ids.py' adding 'mmtbx/regression/tst_pdbtools.py' adding 'mmtbx/regression/tst_polder.py' adding 'mmtbx/regression/tst_polder_1.py' adding 'mmtbx/regression/tst_polder_2.py' adding 'mmtbx/regression/tst_polder_3.py' adding 'mmtbx/regression/tst_polder_4.py' adding 'mmtbx/regression/tst_polder_box.py' adding 'mmtbx/regression/tst_polder_ccs.py' adding 'mmtbx/regression/tst_probe.py' adding 'mmtbx/regression/tst_process_predicted_model.py' adding 'mmtbx/regression/tst_process_predicted_model_cif.py' adding 'mmtbx/regression/tst_prune_model.py' adding 'mmtbx/regression/tst_psi_phi_extraction.py' adding 'mmtbx/regression/tst_rank_scale_map.py' adding 'mmtbx/regression/tst_rdkit_utils_fragmentation.py' adding 'mmtbx/regression/tst_real_space_correlation.py' adding 'mmtbx/regression/tst_reduce.py' adding 'mmtbx/regression/tst_reduce_cryoem_resolution.py' adding 'mmtbx/regression/tst_reduce_timeout.py' adding 'mmtbx/regression/tst_refine_anomalous_substructure.py' adding 'mmtbx/regression/tst_regularize_from_pdb.py' adding 'mmtbx/regression/tst_regularize_from_pdb_cif.py' adding 'mmtbx/regression/tst_ribbons.py' adding 'mmtbx/regression/tst_rigid_bond_test.py' adding 'mmtbx/regression/tst_ringer.py' adding 'mmtbx/regression/tst_sampled_model_density.py' adding 'mmtbx/regression/tst_scattering_table.py' adding 'mmtbx/regression/tst_scattering_type_registry.py' adding 'mmtbx/regression/tst_schrodinger_interface.py' adding 'mmtbx/regression/tst_sequence_validation.py' adding 'mmtbx/regression/tst_sort_hetatms.py' adding 'mmtbx/regression/tst_special_term_at_end.py' adding 'mmtbx/regression/tst_statistics_output.py' adding 'mmtbx/regression/tst_superpose.py' adding 'mmtbx/regression/tst_table_one.py' adding 'mmtbx/regression/tst_utils.py' adding 'mmtbx/regression/tst_validate_ligands.py' adding 'mmtbx/regression/tst_validate_ligands_2.py' adding 'mmtbx/regression/tst_validation_summary.py' adding 'mmtbx/regression/model/__init__.py' adding 'mmtbx/regression/model/tst_model.py' adding 'mmtbx/regression/model/tst_model_2.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix_2.py' adding 'mmtbx/regression/model/tst_model_cart_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_dedeuterate.py' adding 'mmtbx/regression/model/tst_model_get_vdw_radii.py' adding 'mmtbx/regression/model/tst_model_merge.py' adding 'mmtbx/regression/model/tst_model_mtrix.py' adding 'mmtbx/regression/model/tst_model_ncs.py' adding 'mmtbx/regression/model/tst_model_neutralize_scatterers.py' adding 'mmtbx/regression/model/tst_model_pairs_within.py' adding 'mmtbx/regression/model/tst_model_ramachandran.py' adding 'mmtbx/regression/model/tst_model_remove_alternative_conformations.py' adding 'mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py' adding 'mmtbx/regression/model/tst_model_symmetry.py' adding 'mmtbx/regression/model/tst_model_tors_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_utils_merge_models.py' adding 'mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py' adding 'mmtbx/regression/ncs/__init__.py' adding 'mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py' adding 'mmtbx/regression/ncs/tst_ncs_restraints_group_list.py' adding 'mmtbx/regression/ncs/tst_ncs_search.py' adding 'mmtbx/regression/ncs/tst_ncs_search_flips.py' adding 'mmtbx/regression/ncs/tst_ncs_utils.py' adding 'mmtbx/regression/ncs/tst_restraints.py' adding 'mmtbx/regression/tls/__init__.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py' adding 'mmtbx/regression/tls/tst_get_t_scheme.py' adding 'mmtbx/regression/tls/tst_tls.py' adding 'mmtbx/regression/tls/tst_tls_analysis.py' adding 'mmtbx/regression/tls/tst_tls_as_xyz.py' adding 'mmtbx/regression/tls/tst_tls_optimise_amplitudes.py' adding 'mmtbx/regression/tls/tst_tls_refinement_fft.py' adding 'mmtbx/regression/tls/tst_tls_utils.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py' adding 'mmtbx/ringer/__init__.py' adding 'mmtbx/ringer/em_rolling.py' adding 'mmtbx/ringer/em_rscc.py' adding 'mmtbx/ringer/em_scoring.py' adding 'mmtbx/ringer/emringer.py' adding 'mmtbx/ringer/tst_em_rscc.py' adding 'mmtbx/ringer/tst_emringer.py' adding 'mmtbx/rotamer/__init__.py' adding 'mmtbx/rotamer/graphics.py' adding 'mmtbx/rotamer/n_dim_table.py' adding 'mmtbx/rotamer/nqh.py' adding 'mmtbx/rotamer/ramachandran_eval.py' adding 'mmtbx/rotamer/ramachandran_eval_deprecated.py' adding 'mmtbx/rotamer/rotamer_eval.py' adding 'mmtbx/rotamer/sidechain_angles.py' adding 'mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py' adding 'mmtbx/rotamer/tst_rotamer_eval.py' adding 'mmtbx/rsr/__init__.py' adding 'mmtbx/rsr/tst.py' adding 'mmtbx/scaling/__init__.py' adding 'mmtbx/scaling/absence_likelihood.py' adding 'mmtbx/scaling/absences.py' adding 'mmtbx/scaling/absolute_scaling.py' adding 'mmtbx/scaling/basic_analyses.py' adding 'mmtbx/scaling/bayesian_estimator.py' adding 'mmtbx/scaling/data_statistics.py' adding 'mmtbx/scaling/fa_estimation.py' adding 'mmtbx/scaling/make_param.py' adding 'mmtbx/scaling/massage_twin_detwin_data.py' adding 'mmtbx/scaling/matthews.py' adding 'mmtbx/scaling/mean_f_rms_f.py' adding 'mmtbx/scaling/outlier_plots.py' adding 'mmtbx/scaling/outlier_rejection.py' adding 'mmtbx/scaling/pair_analyses.py' adding 'mmtbx/scaling/plan_sad_experiment.py' adding 'mmtbx/scaling/pre_scale.py' adding 'mmtbx/scaling/random_omit.py' adding 'mmtbx/scaling/relative_scaling.py' adding 'mmtbx/scaling/relative_wilson.py' adding 'mmtbx/scaling/remove_outliers.py' adding 'mmtbx/scaling/sigmaa_estimation.py' adding 'mmtbx/scaling/ta_alpha_beta_calc.py' adding 'mmtbx/scaling/thorough_outlier_test.py' adding 'mmtbx/scaling/tst_absences.py' adding 'mmtbx/scaling/tst_bayesian_estimator.py' adding 'mmtbx/scaling/tst_massage_data.py' adding 'mmtbx/scaling/tst_mean_f_rms_f.py' adding 'mmtbx/scaling/tst_outlier.py' adding 'mmtbx/scaling/tst_plan_sad_experiment.py' adding 'mmtbx/scaling/tst_scaling.py' adding 'mmtbx/scaling/tst_sigmaa.py' adding 'mmtbx/scaling/tst_xtriage.py' adding 'mmtbx/scaling/tst_xtriage_twin_analyses.py' adding 'mmtbx/scaling/twin_analyses.py' adding 'mmtbx/scaling/twmad_scale.py' adding 'mmtbx/scaling/xtriage.py' adding 'mmtbx/secondary_structure/__init__.py' adding 'mmtbx/secondary_structure/find_ss_from_ca.py' adding 'mmtbx/secondary_structure/nucleic_acids.py' adding 'mmtbx/secondary_structure/proteins.py' adding 'mmtbx/secondary_structure/regularize_from_pdb.py' adding 'mmtbx/secondary_structure/secondary_structure_params.py' adding 'mmtbx/secondary_structure/ss_validation.py' adding 'mmtbx/secondary_structure/tst.py' adding 'mmtbx/secondary_structure/tst_insertion_codes.py' adding 'mmtbx/secondary_structure/tst_segid.py' adding 'mmtbx/secondary_structure/utils.py' adding 'mmtbx/secondary_structure/build/__init__.py' adding 'mmtbx/secondary_structure/build/ss_idealization.py' adding 'mmtbx/secondary_structure/build/tst_1.py' adding 'mmtbx/secondary_structure/build/tst_2.py' adding 'mmtbx/secondary_structure/build/tst_3.py' adding 'mmtbx/secondary_structure/build/tst_io.py' adding 'mmtbx/secondary_structure/build/tst_ss_id_ncs.py' adding 'mmtbx/sisa/__init__.py' adding 'mmtbx/sisa/optimize/__init__.py' adding 'mmtbx/sisa/optimize/mod_ga.py' adding 'mmtbx/sisa/optimize/mod_input.py' adding 'mmtbx/sisa/optimize/mod_masks.py' adding 'mmtbx/sisa/optimize/mod_mtz.py' adding 'mmtbx/sisa/optimize/mod_optimize.py' adding 'mmtbx/sisa/optimize/mod_util.py' adding 'mmtbx/solvent/__init__.py' adding 'mmtbx/solvent/ensemble_ordered_solvent.py' adding 'mmtbx/solvent/map_to_water.py' adding 'mmtbx/solvent/ordered_solvent.py' adding 'mmtbx/suitename/__init__.py' adding 'mmtbx/suitename/diangle.py' adding 'mmtbx/suitename/dualparse.py' adding 'mmtbx/suitename/mainchain.py' adding 'mmtbx/suitename/suitealyze.py' adding 'mmtbx/suitename/suitename.py' adding 'mmtbx/suitename/suitenamedefs.py' adding 'mmtbx/suitename/suiteninit.py' adding 'mmtbx/suitename/suiteninput.py' adding 'mmtbx/suitename/suitenout.py' adding 'mmtbx/suitename/suites.py' adding 'mmtbx/suitename/transdent.py' adding 'mmtbx/tls/__init__.py' adding 'mmtbx/tls/analysis.py' adding 'mmtbx/tls/command_line.py' adding 'mmtbx/tls/decompose.py' adding 'mmtbx/tls/ladp.py' adding 'mmtbx/tls/optimise_amplitudes.py' adding 'mmtbx/tls/perm10.py' adding 'mmtbx/tls/perm11.py' adding 'mmtbx/tls/perm12.py' adding 'mmtbx/tls/perm13.py' adding 'mmtbx/tls/perm14.py' adding 'mmtbx/tls/perm15.py' adding 'mmtbx/tls/tls_as_xyz.py' adding 'mmtbx/tls/tools.py' adding 'mmtbx/tls/utils.py' adding 'mmtbx/twinning/__init__.py' adding 'mmtbx/twinning/probabalistic_detwinning.py' adding 'mmtbx/twinning/twin_f_model.py' adding 'mmtbx/utils/__init__.py' adding 'mmtbx/utils/fab_elbow_angle.py' adding 'mmtbx/utils/grid2d.py' adding 'mmtbx/utils/ntc.py' adding 'mmtbx/utils/rotatable_bonds.py' adding 'mmtbx/utils/tst_switch_rotamers.py' adding 'mmtbx/validation/__init__.py' adding 'mmtbx/validation/analyze_peptides.py' adding 'mmtbx/validation/barbed_wire_analysis.py' adding 'mmtbx/validation/cablam.py' adding 'mmtbx/validation/cbd_utils.py' adding 'mmtbx/validation/cbetadev.py' adding 'mmtbx/validation/chain_comparison.py' adding 'mmtbx/validation/clashscore.py' adding 'mmtbx/validation/clashscore2.py' adding 'mmtbx/validation/comparama.py' adding 'mmtbx/validation/comprehensive_residue.py' adding 'mmtbx/validation/convert_lists.py' adding 'mmtbx/validation/datasets.py' adding 'mmtbx/validation/ensembles.py' adding 'mmtbx/validation/experimental.py' adding 'mmtbx/validation/fav_lists.py' adding 'mmtbx/validation/graphics.py' adding 'mmtbx/validation/holton_geometry_validation.py' adding 'mmtbx/validation/ligands.py' adding 'mmtbx/validation/mean_devs_PRO_phi_psi.py' adding 'mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py' adding 'mmtbx/validation/mean_devs_others_phi_psi.py' adding 'mmtbx/validation/model_properties.py' adding 'mmtbx/validation/mp_validate_bonds.py' adding 'mmtbx/validation/omegalyze.py' adding 'mmtbx/validation/phi_psi_2_data.py' adding 'mmtbx/validation/rama_z.py' adding 'mmtbx/validation/ramalyze.py' adding 'mmtbx/validation/restraints.py' adding 'mmtbx/validation/rna_validate.py' adding 'mmtbx/validation/rotalyze.py' adding 'mmtbx/validation/sequence.py' adding 'mmtbx/validation/undowser.py' adding 'mmtbx/validation/undowser2.py' adding 'mmtbx/validation/utils.py' adding 'mmtbx/validation/validate_ligands.py' adding 'mmtbx/validation/waters.py' adding 'mmtbx/validation/molprobity/__init__.py' adding 'mmtbx/validation/molprobity/kinemage_templates.py' adding 'mmtbx/validation/molprobity/mp_geo.py' adding 'mmtbx/validation/molprobity/percentile_clashscore.py' adding 'mmtbx/validation/molprobity/percentile_mpscore.py' adding 'mmtbx/validation/molprobity/probescore_ligand.py' adding 'mmtbx/validation/molprobity/table_from_json.py' adding 'mmtbx/validation/ramachandran/__init__.py' adding 'mmtbx/validation/ramachandran/convert_from_text.py' adding 'mmtbx/validation/regression/__init__.py' adding 'mmtbx/validation/regression/run_restraints.py' adding 'mmtbx/validation/regression/tst_cablam.py' adding 'mmtbx/validation/regression/tst_cablam_2.py' adding 'mmtbx/validation/regression/tst_cbetadev.py' adding 'mmtbx/validation/regression/tst_cbetadev_02.py' adding 'mmtbx/validation/regression/tst_chiral_validation.py' adding 'mmtbx/validation/regression/tst_clashscore.py' adding 'mmtbx/validation/regression/tst_clashscore_2.py' adding 'mmtbx/validation/regression/tst_do_flips_clashscore.py' adding 'mmtbx/validation/regression/tst_experimental.py' adding 'mmtbx/validation/regression/tst_find_region_max_value.py' adding 'mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py' adding 'mmtbx/validation/regression/tst_keep_hydrogens.py' adding 'mmtbx/validation/regression/tst_model_properties.py' adding 'mmtbx/validation/regression/tst_molprobity_1.py' adding 'mmtbx/validation/regression/tst_molprobity_2.py' adding 'mmtbx/validation/regression/tst_molprobity_3.py' adding 'mmtbx/validation/regression/tst_molprobity_4.py' adding 'mmtbx/validation/regression/tst_molprobity_5.py' adding 'mmtbx/validation/regression/tst_molprobity_arguments.py' adding 'mmtbx/validation/regression/tst_mp_geo.py' adding 'mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py' adding 'mmtbx/validation/regression/tst_mp_geo_endtoend.py' adding 'mmtbx/validation/regression/tst_mp_validate_bonds.py' adding 'mmtbx/validation/regression/tst_omegalyze.py' adding 'mmtbx/validation/regression/tst_rama_z_01.py' adding 'mmtbx/validation/regression/tst_rama_z_02.py' adding 'mmtbx/validation/regression/tst_ramalyze.py' adding 'mmtbx/validation/regression/tst_ramalyze2.py' adding 'mmtbx/validation/regression/tst_ramalyze_rare.py' adding 'mmtbx/validation/regression/tst_restraints.py' adding 'mmtbx/validation/regression/tst_rna_validate.py' adding 'mmtbx/validation/regression/tst_rotalyze.py' adding 'mmtbx/validation/regression/tst_suitename.py' adding 'mmtbx/validation/regression/tst_symmetry_SS.py' adding 'mmtbx/validation/regression/tst_undowser.py' adding 'mmtbx/validation/regression/tst_undowser2.py' adding 'mmtbx/validation/regression/tst_waters.py' adding 'mmtbx/wwpdb/__init__.py' adding 'mmtbx/wwpdb/rcsb_entry_request.py' adding 'mmtbx/wwpdb/rcsb_web_services.py' adding 'mmtbx/wwpdb/tst_rcsb_entry_request.py' adding 'mmtbx/wwpdb/tst_rcsb_web_services.py' adding 'omptbx/__init__.py' adding 'omptbx/tst.py' adding 'qttbx/__init__.py' adding 'qttbx/phil.py' adding 'qttbx/viewers/__init__.py' adding 'qttbx/viewers/chimerax.py' adding 'rstbx/__init__.py' adding 'rstbx/run_tests.py' adding 'rstbx/utils.py' adding 'rstbx/apps/__init__.py' adding 'rstbx/apps/dual_resolution_helpers.py' adding 'rstbx/apps/slip_helpers.py' adding 'rstbx/apps/spot_markup.py' adding 'rstbx/apps/stills/__init__.py' adding 'rstbx/apps/stills/deltapsi_refinement_preceding_integration.py' adding 'rstbx/apps/stills/dials_refinement_preceding_integration.py' adding 'rstbx/apps/stills/simple_integration.py' adding 'rstbx/apps/stills/stills_integration.py' adding 'rstbx/apps/stills/util.py' adding 'rstbx/array_family/__init__.py' adding 'rstbx/array_family/flex.py' adding 'rstbx/bandpass/__init__.py' adding 'rstbx/bandpass/simulated_annealing.py' adding 'rstbx/bpcx/__init__.py' adding 'rstbx/bpcx/compare_mosflm_xds.py' adding 'rstbx/bpcx/ersatz_misset.py' adding 'rstbx/bpcx/uc1_2.py' adding 'rstbx/bpcx/uc1_2_positions.py' adding 'rstbx/bpcx/uc1_2_positions_idx.py' adding 'rstbx/bpcx/uc1_2_validate.py' adding 'rstbx/bpcx/uc1_2a.py' adding 'rstbx/bpcx/detector_model/__init__.py' adding 'rstbx/bpcx/detector_model/detector.py' adding 'rstbx/bpcx/detector_model/instrument_specifics.py' adding 'rstbx/bpcx/detector_model/tst_detector_model.py' adding 'rstbx/cftbx/__init__.py' adding 'rstbx/cftbx/coordinate_frame_converter.py' adding 'rstbx/cftbx/coordinate_frame_helpers.py' adding 'rstbx/cftbx/tst_coordinate_frame_converter.py' adding 'rstbx/command_line/__init__.py' adding 'rstbx/command_line/example_viewer.py' adding 'rstbx/command_line/index.py' adding 'rstbx/command_line/simage.create.py' adding 'rstbx/command_line/simage.explore_completeness.py' adding 'rstbx/command_line/simage.solver.py' adding 'rstbx/command_line/simage.wx_display.py' adding 'rstbx/command_line/slip_viewer.py' adding 'rstbx/command_line/viewer.py' adding 'rstbx/detectors/__init__.py' adding 'rstbx/detectors/silicon.py' adding 'rstbx/dials_core/__init__.py' adding 'rstbx/dials_core/integration_core.py' adding 'rstbx/diffraction/__init__.py' adding 'rstbx/diffraction/tst_ewald_sphere.py' adding 'rstbx/diffraction/tst_partial_derivatives.py' adding 'rstbx/diffraction/tst_predict.py' adding 'rstbx/diffraction/fastbragg/__init__.py' adding 'rstbx/diffraction/fastbragg/tst_bragg_minimal.py' adding 'rstbx/diffraction/fastbragg/tst_utils_clustering.py' adding 'rstbx/dps_core/__init__.py' adding 'rstbx/dps_core/basis_choice.py' adding 'rstbx/dps_core/cell_assessment.py' adding 'rstbx/dps_core/constrainment.py' adding 'rstbx/dps_core/lepage.py' adding 'rstbx/dps_core/sampling.py' adding 'rstbx/dps_core/tst_iotbx_converter.py' adding 'rstbx/dps_core/zuoreduction.py' adding 'rstbx/indexing/__init__.py' adding 'rstbx/indexing/do_index.py' adding 'rstbx/indexing/tst_auto_monoscan.py' adding 'rstbx/indexing/tst_dataset1.py' adding 'rstbx/indexing_api/__init__.py' adding 'rstbx/indexing_api/basis_choice.py' adding 'rstbx/indexing_api/force_cell.py' adding 'rstbx/indexing_api/lattice.py' adding 'rstbx/indexing_api/nearest_neighbor.py' adding 'rstbx/indexing_api/outlier_detection.py' adding 'rstbx/indexing_api/outlier_procedure.py' adding 'rstbx/indexing_api/sampling.py' adding 'rstbx/indexing_api/test_dps.py' adding 'rstbx/indexing_api/tools.py' adding 'rstbx/new_horizons/__init__.py' adding 'rstbx/new_horizons/index.py' adding 'rstbx/new_horizons/oscillation_shots.py' adding 'rstbx/new_horizons/pixel_spread.py' adding 'rstbx/new_horizons/speckfinder.py' adding 'rstbx/new_horizons/spot_shape.py' adding 'rstbx/new_horizons/stats_index.py' adding 'rstbx/outlier_spots/__init__.py' adding 'rstbx/outlier_spots/fit_distribution.py' adding 'rstbx/phil/__init__.py' adding 'rstbx/phil/phil_preferences.py' adding 'rstbx/phil/preferences.py' adding 'rstbx/phil/scope.py' adding 'rstbx/simage/__init__.py' adding 'rstbx/simage/create.py' adding 'rstbx/simage/explore_completeness.py' adding 'rstbx/simage/integrate_crude.py' adding 'rstbx/simage/refine_uc_cr.py' adding 'rstbx/simage/run_labelit_index.py' adding 'rstbx/simage/run_spotfinder.py' adding 'rstbx/simage/solver.py' adding 'rstbx/simage/tst.py' adding 'rstbx/simage/wx_display.py' adding 'rstbx/simulation/__init__.py' adding 'rstbx/simulation/constants.py' adding 'rstbx/simulation/sim_pdf.py' adding 'rstbx/simulation/sim_utils.py' adding 'rstbx/simulation/tst_xfel1_simple.py' adding 'rstbx/slip_viewer/__init__.py' adding 'rstbx/slip_viewer/calibration_frame.py' adding 'rstbx/slip_viewer/example_frame_plugin_hidden.py' adding 'rstbx/slip_viewer/frame.py' adding 'rstbx/slip_viewer/pyslip.py' adding 'rstbx/slip_viewer/ring_frame.py' adding 'rstbx/slip_viewer/score_frame.py' adding 'rstbx/slip_viewer/slip_display.py' adding 'rstbx/slip_viewer/slip_viewer_image_factory.py' adding 'rstbx/slip_viewer/tile_generation.py' adding 'rstbx/slip_viewer/uc_frame.py' adding 'rstbx/sublattice_support/__init__.py' adding 'rstbx/sublattice_support/change_basis.py' adding 'rstbx/sublattice_support/tst_sublattice.py' adding 'rstbx/symmetry/__init__.py' adding 'rstbx/symmetry/sgtbx_adaptor.py' adding 'rstbx/symmetry/subgroup.py' adding 'rstbx/symmetry/constraints/__init__.py' adding 'rstbx/symmetry/constraints/g_gradients.py' adding 'rstbx/symmetry/constraints/parameter_reduction.py' adding 'rstbx/viewer/__init__.py' adding 'rstbx/viewer/calibration.py' adding 'rstbx/viewer/calibration_frame.py' adding 'rstbx/viewer/controls.py' adding 'rstbx/viewer/dataset.py' adding 'rstbx/viewer/display.py' adding 'rstbx/viewer/drivers.py' adding 'rstbx/viewer/frame.py' adding 'rstbx/viewer/indexing.py' adding 'rstbx/viewer/integration.py' adding 'rstbx/viewer/pixels3d.py' adding 'rstbx/viewer/processing.py' adding 'rstbx/viewer/results_base.py' adding 'rstbx/viewer/spotfinder_frame.py' adding 'rstbx/viewer/spotfinder_wrap.py' adding 'rstbx/viewer/tst.py' adding 'scitbx/__init__.py' adding 'scitbx/cross_entropy.py' adding 'scitbx/cubicle_neighbors.py' adding 'scitbx/differential_evolution.py' adding 'scitbx/direct_search_simulated_annealing.py' adding 'scitbx/fftpack.py' adding 'scitbx/genetic_algorithm_with_mp.py' adding 'scitbx/golden_section_search.py' adding 'scitbx/lbfgsb.py' adding 'scitbx/libtbx_refresh.py' adding 'scitbx/minimizers.py' adding 'scitbx/minpack.py' adding 'scitbx/r3_utils.py' adding 'scitbx/regular_grid_on_unit_sphere.py' adding 'scitbx/restraints.py' adding 'scitbx/run_tests.py' adding 'scitbx/simplex.py' adding 'scitbx/smoothing.py' adding 'scitbx/array_family/__init__.py' adding 'scitbx/array_family/flex.py' adding 'scitbx/array_family/shared.py' adding 'scitbx/array_family/accessors/__init__.py' adding 'scitbx/array_family/boost_python/__init__.py' adding 'scitbx/array_family/boost_python/regression_test.py' adding 'scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py' adding 'scitbx/array_family/boost_python/tst_flex.py' adding 'scitbx/array_family/boost_python/tst_flex_argument_passing.py' adding 'scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py' adding 'scitbx/array_family/boost_python/tst_numpy_bridge.py' adding 'scitbx/array_family/boost_python/tst_shared.py' adding 'scitbx/array_family/boost_python/tst_smart_selection.py' adding 'scitbx/array_family/detail/__init__.py' adding 'scitbx/boost_python/__init__.py' adding 'scitbx/command_line/__init__.py' adding 'scitbx/command_line/apply_tapenade_hints.py' adding 'scitbx/command_line/generate_error_h.py' adding 'scitbx/command_line/histogram.py' adding 'scitbx/command_line/show_exp_times.py' adding 'scitbx/command_line/show_sizes.py' adding 'scitbx/command_line/unicode_examples.py' adding 'scitbx/dtmin/__init__.py' adding 'scitbx/dtmin/auxiliary.py' adding 'scitbx/dtmin/bounds.py' adding 'scitbx/dtmin/compulsory.py' adding 'scitbx/dtmin/min_logging.py' adding 'scitbx/dtmin/minimizer.py' adding 'scitbx/dtmin/optional.py' adding 'scitbx/dtmin/realsymmetricpseudoinverse.py' adding 'scitbx/dtmin/refinebase.py' adding 'scitbx/dtmin/reparams.py' adding 'scitbx/dtmin/twisted_gaussian.py' adding 'scitbx/dtmin/regression/__init__.py' adding 'scitbx/dtmin/regression/tst_dtmin_basic.py' adding 'scitbx/dtmin/regression/tst_dtmin_booth.py' adding 'scitbx/dtmin/regression/tst_dtmin_twisted.py' adding 'scitbx/error/__init__.py' adding 'scitbx/error/tst_error.py' adding 'scitbx/examples/__init__.py' adding 'scitbx/examples/bootstrap.py' adding 'scitbx/examples/chebyshev_lsq_example.py' adding 'scitbx/examples/flex_array_loops.py' adding 'scitbx/examples/flex_grid.py' adding 'scitbx/examples/functions.py' adding 'scitbx/examples/immoptibox_ports.py' adding 'scitbx/examples/integrating_a_weighted_sinc_function.py' adding 'scitbx/examples/lbfgs_linear_least_squares_fit.py' adding 'scitbx/examples/lbfgs_recipe.py' adding 'scitbx/examples/minimizer_comparisons.py' adding 'scitbx/examples/principal_axes_of_inertia.py' adding 'scitbx/examples/rigid_body_refinement_core.py' adding 'scitbx/examples/bevington/__init__.py' adding 'scitbx/examples/bevington/silver.py' adding 'scitbx/glmtbx/__init__.py' adding 'scitbx/glmtbx/boost_python/__init__.py' adding 'scitbx/glmtbx/tests/__init__.py' adding 'scitbx/glmtbx/tests/tst.py' adding 'scitbx/graph/__init__.py' adding 'scitbx/graph/rigidity.py' adding 'scitbx/graph/rigidity_matrix_symbolic.py' adding 'scitbx/graph/tardy_tree.py' adding 'scitbx/graph/test_cases_tardy_pdb.py' adding 'scitbx/graph/tst_rigidity.py' adding 'scitbx/graph/tst_tardy_tree.py' adding 'scitbx/graph/tst_tardy_tree_find_paths.py' adding 'scitbx/graph/tst_utils.py' adding 'scitbx/graph/utils.py' adding 'scitbx/graphics_utils/__init__.py' adding 'scitbx/graphics_utils/tst.py' adding 'scitbx/iso_surface/__init__.py' adding 'scitbx/iso_surface/tst_iso_surface.py' adding 'scitbx/lbfgs/__init__.py' adding 'scitbx/lbfgs/tst_curvatures.py' adding 'scitbx/lbfgs/tst_ext.py' adding 'scitbx/lbfgs/tst_func_free_line_search.py' adding 'scitbx/lbfgs/tst_lbfgs_fem.py' adding 'scitbx/lbfgs/tst_mpi_split_evaluator.py' adding 'scitbx/lbfgs/dev/__init__.py' adding 'scitbx/lbfgs/dev/run.py' adding 'scitbx/lbfgs/dev/twisted_gaussian.py' adding 'scitbx/linalg/__init__.py' adding 'scitbx/linalg/eigensystem.py' adding 'scitbx/linalg/ext.py' adding 'scitbx/linalg/householder.py' adding 'scitbx/linalg/svd.py' adding 'scitbx/linalg/boost_python/__init__.py' adding 'scitbx/linalg/tests/__init__.py' adding 'scitbx/linalg/tests/tst_cholesky.py' adding 'scitbx/linalg/tests/tst_eigensystem.py' adding 'scitbx/linalg/tests/tst_lapack_dsyev.py' adding 'scitbx/linalg/tests/tst_lapack_svd.py' adding 'scitbx/linalg/tests/tst_matrix.py' adding 'scitbx/linalg/tests/tst_svd.py' adding 'scitbx/line_search/__init__.py' adding 'scitbx/lstbx/__init__.py' adding 'scitbx/lstbx/normal_eqns.py' adding 'scitbx/lstbx/normal_eqns_solving.py' adding 'scitbx/lstbx/benchmarks/__init__.py' adding 'scitbx/lstbx/boost_python/__init__.py' adding 'scitbx/lstbx/tests/__init__.py' adding 'scitbx/lstbx/tests/test_problems.py' adding 'scitbx/lstbx/tests/tst_normal_equations.py' adding 'scitbx/math/__init__.py' adding 'scitbx/math/besselk.py' adding 'scitbx/math/breakpoint.py' adding 'scitbx/math/chebyshev_lsq_fit.py' adding 'scitbx/math/clustering.py' adding 'scitbx/math/cubic_spline.py' adding 'scitbx/math/curve_fitting.py' adding 'scitbx/math/des_3_100_13.py' adding 'scitbx/math/des_3_240_21.py' adding 'scitbx/math/distributions.py' adding 'scitbx/math/euler_angles.py' adding 'scitbx/math/ext.py' adding 'scitbx/math/farey.py' adding 'scitbx/math/fit_peak.py' adding 'scitbx/math/fit_quadratic_function.py' adding 'scitbx/math/fliege_mayer_400.py' adding 'scitbx/math/fliege_mayer_900.py' adding 'scitbx/math/fliege_mayer_900_ylm.py' adding 'scitbx/math/gaussian.py' adding 'scitbx/math/gaussian_fit.py' adding 'scitbx/math/gumbel.py' adding 'scitbx/math/incremental_SO3_sampling.py' adding 'scitbx/math/lefebvre.py' adding 'scitbx/math/minimum_covering_ellipsoid.py' adding 'scitbx/math/multiple_superposition.py' adding 'scitbx/math/periodogram.py' adding 'scitbx/math/scale_curves.py' adding 'scitbx/math/sieve_of_eratosthenes.py' adding 'scitbx/math/so3_lie_algebra.py' adding 'scitbx/math/spe.py' adding 'scitbx/math/sphere_sphere_intersection.py' adding 'scitbx/math/superpose.py' adding 'scitbx/math/tst_2d_zernike.py' adding 'scitbx/math/tst_bessel_zeros.py' adding 'scitbx/math/tst_multivariate_moments.py' adding 'scitbx/math/tst_so3_lie_algebra.py' adding 'scitbx/math/tst_undirected_graph.py' adding 'scitbx/math/tst_zernike.py' adding 'scitbx/math/tst_zernike_mom.py' adding 'scitbx/math/undirected_graph.py' adding 'scitbx/math/zernike_align_fft.py' adding 'scitbx/math/boost_python/__init__.py' adding 'scitbx/math/dev/__init__.py' adding 'scitbx/math/erf/__init__.py' adding 'scitbx/math/tests/__init__.py' adding 'scitbx/math/tests/tst_angle_derivative.py' adding 'scitbx/math/tests/tst_bessel.py' adding 'scitbx/math/tests/tst_clustering.py' adding 'scitbx/math/tests/tst_cubic_equation.py' adding 'scitbx/math/tests/tst_curve_fitting.py' adding 'scitbx/math/tests/tst_dmatrix.py' adding 'scitbx/math/tests/tst_error_propagation_matrix_inverse.py' adding 'scitbx/math/tests/tst_euler_angles.py' adding 'scitbx/math/tests/tst_exp_functions.py' adding 'scitbx/math/tests/tst_fit_peak.py' adding 'scitbx/math/tests/tst_fit_quadratic_function.py' adding 'scitbx/math/tests/tst_g_function.py' adding 'scitbx/math/tests/tst_gaussian.py' adding 'scitbx/math/tests/tst_gaussian_fit_1d_analytical.py' adding 'scitbx/math/tests/tst_gcd.py' adding 'scitbx/math/tests/tst_halton.py' adding 'scitbx/math/tests/tst_line_search.py' adding 'scitbx/math/tests/tst_math.py' adding 'scitbx/math/tests/tst_minimum_covering_ellipsoid.py' adding 'scitbx/math/tests/tst_orthonormal_basis.py' adding 'scitbx/math/tests/tst_periodogram.py' adding 'scitbx/math/tests/tst_quadrature.py' adding 'scitbx/math/tests/tst_r3_rotation.py' adding 'scitbx/math/tests/tst_resample.py' adding 'scitbx/math/tests/tst_similarity_indices.py' adding 'scitbx/math/tests/tst_superpose.py' adding 'scitbx/math/tests/tst_tetrahedron.py' adding 'scitbx/math/tests/tst_uniform_rotation_matrix.py' adding 'scitbx/math/tests/tst_weighted_correlation.py' adding 'scitbx/matrix/__init__.py' adding 'scitbx/matrix/row_echelon.py' adding 'scitbx/matrix/tests/__init__.py' adding 'scitbx/matrix/tests/tst_householder.py' adding 'scitbx/matrix/tests/tst_row_echelon.py' adding 'scitbx/misc/__init__.py' adding 'scitbx/python_utils/__init__.py' adding 'scitbx/python_utils/command_line.py' adding 'scitbx/python_utils/dicts.py' adding 'scitbx/python_utils/graph_tools.py' adding 'scitbx/python_utils/misc.py' adding 'scitbx/python_utils/random_transform.py' adding 'scitbx/python_utils/robust_statistics.py' adding 'scitbx/python_utils/signal_utils.py' adding 'scitbx/python_utils/tst_graph.py' adding 'scitbx/python_utils/tst_random_transform.py' adding 'scitbx/python_utils/tst_robust.py' adding 'scitbx/random/__init__.py' adding 'scitbx/random/boost_python/__init__.py' adding 'scitbx/random/tests/__init__.py' adding 'scitbx/random/tests/tst_random.py' adding 'scitbx/rigid_body/__init__.py' adding 'scitbx/rigid_body/tst.py' adding 'scitbx/rigid_body/essence/__init__.py' adding 'scitbx/rigid_body/essence/body_lib.py' adding 'scitbx/rigid_body/essence/featherstone.py' adding 'scitbx/rigid_body/essence/joint_lib.py' adding 'scitbx/rigid_body/essence/make_bundles.py' adding 'scitbx/rigid_body/essence/spatial_lib.py' adding 'scitbx/rigid_body/essence/tardy.py' adding 'scitbx/rigid_body/essence/tst_basic.py' adding 'scitbx/rigid_body/essence/tst_energy_plots.py' adding 'scitbx/rigid_body/essence/tst_tardy.py' adding 'scitbx/rigid_body/essence/wx_tardy.py' adding 'scitbx/rigid_body/proto/__init__.py' adding 'scitbx/rigid_body/proto/featherstone.py' adding 'scitbx/rigid_body/proto/free_motion_reference_impl.py' adding 'scitbx/rigid_body/proto/joint_lib.py' adding 'scitbx/rigid_body/proto/test_simulation.py' adding 'scitbx/rigid_body/proto/test_utils.py' adding 'scitbx/rigid_body/proto/tst_featherstone.py' adding 'scitbx/rigid_body/proto/tst_free_motion.py' adding 'scitbx/rigid_body/proto/tst_free_motion_hard.py' adding 'scitbx/rigid_body/proto/tst_joint_lib.py' adding 'scitbx/rigid_body/proto/tst_molecules.py' adding 'scitbx/rigid_body/proto/tst_singular.py' adding 'scitbx/rigid_body/proto/tst_spherical_refinement.py' adding 'scitbx/rigid_body/proto/utils.py' adding 'scitbx/rigid_body/proto/wx_free_motion.py' adding 'scitbx/rigid_body/proto/wx_joint_lib.py' adding 'scitbx/rigid_body/proto/wx_molecules.py' adding 'scitbx/serialization/__init__.py' adding 'scitbx/slatec/__init__.py' adding 'scitbx/source_generators/__init__.py' adding 'scitbx/source_generators/flex_fwd_h.py' adding 'scitbx/source_generators/lbfgs_fem.py' adding 'scitbx/source_generators/utils.py' adding 'scitbx/source_generators/array_family/__init__.py' adding 'scitbx/source_generators/array_family/generate_algebras.py' adding 'scitbx/source_generators/array_family/generate_all.py' adding 'scitbx/source_generators/array_family/generate_apply.py' adding 'scitbx/source_generators/array_family/generate_operator_functors.py' adding 'scitbx/source_generators/array_family/generate_operator_traits_builtin.py' adding 'scitbx/source_generators/array_family/generate_reductions.py' adding 'scitbx/source_generators/array_family/generate_std_imports.py' adding 'scitbx/source_generators/array_family/operator_functor_info.py' adding 'scitbx/sparse/__init__.py' adding 'scitbx/sparse/boost_python/__init__.py' adding 'scitbx/sparse/tests/__init__.py' adding 'scitbx/sparse/tests/tst_lu_factorization.py' adding 'scitbx/sparse/tests/tst_sparse.py' adding 'scitbx/stdlib/__init__.py' adding 'scitbx/stl/__init__.py' adding 'scitbx/stl/map.py' adding 'scitbx/stl/set.py' adding 'scitbx/stl/tst_map.py' adding 'scitbx/stl/tst_set.py' adding 'scitbx/stl/tst_vector.py' adding 'scitbx/stl/vector.py' adding 'scitbx/suffixtree/__init__.py' adding 'scitbx/suffixtree/single.py' adding 'scitbx/suffixtree/boost_python/__init__.py' adding 'scitbx/suffixtree/test/__init__.py' adding 'scitbx/suffixtree/test/tst_single.py' adding 'scitbx/tests/__init__.py' adding 'scitbx/tests/differential_evolution.py' adding 'scitbx/tests/direct_search_simulated_annealing.py' adding 'scitbx/tests/golden_section_search.py' adding 'scitbx/tests/simplex.py' adding 'scitbx/tests/tst_basic.py' adding 'scitbx/tests/tst_cubicle_neighbors.py' adding 'scitbx/tests/tst_genetic_algorithm_with_mp.py' adding 'scitbx/tests/tst_minimizer_lbfgs_general.py' adding 'scitbx/tests/tst_r3_utils.py' adding 'scitbx/tests/tst_regular_grid_on_unit_sphere.py' adding 'scitbx/tests/tst_smoothing.py' adding 'scitbx/wigner/__init__.py' adding 'scitbx/wigner/tst_wigner3j.py' adding 'serialtbx/__init__.py' adding 'serialtbx/detector/__init__.py' adding 'serialtbx/detector/cspad.py' adding 'serialtbx/detector/jungfrau.py' adding 'serialtbx/detector/rayonix.py' adding 'serialtbx/detector/xtc.py' adding 'serialtbx/detector/legacy_metrology/__init__.py' adding 'serialtbx/detector/legacy_metrology/cspad_detector.py' adding 'serialtbx/detector/legacy_metrology/generic_detector.py' adding 'serialtbx/detector/legacy_metrology/metrology.py' adding 'serialtbx/mono_simulation/__init__.py' adding 'serialtbx/mono_simulation/max_like.py' adding 'serialtbx/mono_simulation/util.py' adding 'serialtbx/util/__init__.py' adding 'serialtbx/util/construct_frame.py' adding 'serialtbx/util/energy_scan_notch_finder.py' adding 'serialtbx/util/time.py' adding 'simtbx/__init__.py' adding 'simtbx/run_tests.py' adding 'simtbx/diffBragg/__init__.py' adding 'simtbx/diffBragg/attr_list.py' adding 'simtbx/diffBragg/device.py' adding 'simtbx/diffBragg/ensemble_refine_launcher.py' adding 'simtbx/diffBragg/hopper_ensemble_utils.py' adding 'simtbx/diffBragg/hopper_io.py' adding 'simtbx/diffBragg/hopper_utils.py' adding 'simtbx/diffBragg/mpi_logger.py' adding 'simtbx/diffBragg/parameter_errors.py' adding 'simtbx/diffBragg/phil.py' adding 'simtbx/diffBragg/prep_stage2_input.py' adding 'simtbx/diffBragg/psf.py' adding 'simtbx/diffBragg/stage_two_utils.py' adding 'simtbx/diffBragg/utils.py' adding 'simtbx/diffBragg/refiners/__init__.py' adding 'simtbx/diffBragg/refiners/base_refiner.py' adding 'simtbx/diffBragg/refiners/geometry.py' adding 'simtbx/diffBragg/refiners/parameters.py' adding 'simtbx/diffBragg/refiners/stage_two_refiner.py' adding 'simtbx/diffBragg/refiners/crystal_systems/__init__.py' adding 'simtbx/diffBragg/refiners/crystal_systems/hexagonal.py' adding 'simtbx/diffBragg/refiners/crystal_systems/manager.py' adding 'simtbx/diffBragg/refiners/crystal_systems/monoclinic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/tetragonal.py' adding 'simtbx/gpu/__init__.py' adding 'simtbx/gpu/tst_exafel_api.py' adding 'simtbx/gpu/tst_gpu_multisource_background.py' adding 'simtbx/gpu/tst_shoeboxes.py' adding 'simtbx/kokkos/__init__.py' adding 'simtbx/kokkos/tst_kokkos_lib.py' adding 'simtbx/modeling/FormatHDF5AttributeGeometry.py' adding 'simtbx/modeling/__init__.py' adding 'simtbx/modeling/forward_models.py' adding 'simtbx/modeling/predictions.py' adding 'simtbx/nanoBragg/__init__.py' adding 'simtbx/nanoBragg/anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/nanoBragg_beam.py' adding 'simtbx/nanoBragg/nanoBragg_crystal.py' adding 'simtbx/nanoBragg/nanoBragg_gui_dialogs.py' adding 'simtbx/nanoBragg/nanoBragg_gui_frames.py' adding 'simtbx/nanoBragg/nanoBragg_gui_init.py' adding 'simtbx/nanoBragg/nanoBragg_input.py' adding 'simtbx/nanoBragg/nanoBragg_threads.py' adding 'simtbx/nanoBragg/sim_data.py' adding 'simtbx/nanoBragg/tst_anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/tst_gauss_argchk.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity2.py' adding 'simtbx/nanoBragg/tst_multisource_background.py' adding 'simtbx/nanoBragg/tst_nanoBragg_basic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_cbf_write.py' adding 'simtbx/nanoBragg/tst_nanoBragg_minimal.py' adding 'simtbx/nanoBragg/tst_nanoBragg_mosaic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_multipanel.py' adding 'simtbx/nanoBragg/tst_nanoBragg_pilatus.py' adding 'simtbx/nanoBragg/utils.py' adding 'simtbx/pixel/__init__.py' adding 'smtbx/__init__.py' adding 'smtbx/development.py' adding 'smtbx/libtbx_refresh.py' adding 'smtbx/run_tests.py' adding 'smtbx/utils.py' adding 'smtbx/ab_initio/__init__.py' adding 'smtbx/ab_initio/charge_flipping.py' adding 'smtbx/ab_initio/tests/__init__.py' adding 'smtbx/ab_initio/tests/tst_ab_initio_ext.py' adding 'smtbx/ab_initio/tests/tst_charge_flipping.py' adding 'smtbx/absolute_structure/__init__.py' adding 'smtbx/array_family/__init__.py' adding 'smtbx/command_line/__init__.py' adding 'smtbx/command_line/absolute_structure.py' adding 'smtbx/command_line/anom_refine.py' adding 'smtbx/command_line/benchmark_refinement.py' adding 'smtbx/command_line/masks.py' adding 'smtbx/command_line/refine.py' adding 'smtbx/masks/__init__.py' adding 'smtbx/refinement/__init__.py' adding 'smtbx/refinement/least_squares.py' adding 'smtbx/refinement/weighting_schemes.py' adding 'smtbx/refinement/constraints/__init__.py' adding 'smtbx/refinement/constraints/adp.py' adding 'smtbx/refinement/constraints/all.py' adding 'smtbx/refinement/constraints/fpfdp.py' adding 'smtbx/refinement/constraints/occupancy.py' adding 'smtbx/refinement/constraints/rigid.py' adding 'smtbx/refinement/constraints/site.py' adding 'smtbx/refinement/constraints/geometrical/__init__.py' adding 'smtbx/refinement/constraints/geometrical/all.py' adding 'smtbx/refinement/constraints/geometrical/hydrogens.py' adding 'smtbx/refinement/constraints/tests/__init__.py' adding 'smtbx/refinement/constraints/tests/tst_constrained_structure.py' adding 'smtbx/refinement/constraints/tests/tst_direction.py' adding 'smtbx/refinement/constraints/tests/tst_disorder.py' adding 'smtbx/refinement/constraints/tests/tst_lbfgs.py' adding 'smtbx/refinement/constraints/tests/tst_occupancies.py' adding 'smtbx/refinement/constraints/tests/tst_reparametrisation.py' adding 'smtbx/refinement/constraints/tests/tst_rigid.py' adding 'smtbx/refinement/constraints/tests/tst_same_group.py' adding 'smtbx/refinement/restraints/__init__.py' adding 'smtbx/refinement/restraints/adp_restraints.py' adding 'smtbx/refinement/restraints/origin_fixing_restraints.py' adding 'smtbx/regression/__init__.py' adding 'smtbx/regression/tst_commandline_anomrefine.py' adding 'smtbx/regression/tst_commandline_refine.py' adding 'smtbx/regression/test_data/__init__.py' adding 'smtbx/source_generators/__init__.py' adding 'smtbx/source_generators/flex_fwd_h.py' adding 'smtbx/stl/__init__.py' adding 'smtbx/stl/map.py' adding 'smtbx/structure_factors/__init__.py' adding 'smtbx/structure_factors/direct/__init__.py' adding 'spotfinder/__init__.py' adding 'spotfinder/exception.py' adding 'spotfinder/run_tests.py' adding 'spotfinder/applications/__init__.py' adding 'spotfinder/applications/image_viewer.py' adding 'spotfinder/applications/practical_heuristics.py' adding 'spotfinder/applications/signal_strength.py' adding 'spotfinder/applications/stats_distl.py' adding 'spotfinder/applications/wrappers.py' adding 'spotfinder/applications/heuristic_tbx/__init__.py' adding 'spotfinder/applications/heuristic_tbx/ice2.py' adding 'spotfinder/applications/heuristic_tbx/ice_nztt.py' adding 'spotfinder/applications/heuristic_tbx/method2_resolution.py' adding 'spotfinder/applications/heuristic_tbx/spotreporter.py' adding 'spotfinder/applications/xfel/__init__.py' adding 'spotfinder/applications/xfel/correction_vector_plot.py' adding 'spotfinder/applications/xfel/cxi_phil.py' adding 'spotfinder/applications/xfel/cxi_run3.py' adding 'spotfinder/array_family/__init__.py' adding 'spotfinder/array_family/flex.py' adding 'spotfinder/command_line/__init__.py' adding 'spotfinder/command_line/find_active_area.py' adding 'spotfinder/command_line/image_viewer.py' adding 'spotfinder/command_line/mp_spotfinder_server_read_file.py' adding 'spotfinder/command_line/signal_strength.py' adding 'spotfinder/command_line/sweep_strength.py' adding 'spotfinder/command_line/thin_client.py' adding 'spotfinder/core_toolbox/__init__.py' adding 'spotfinder/core_toolbox/close_spots_detail.py' adding 'spotfinder/diffraction/__init__.py' adding 'spotfinder/diffraction/geometry.py' adding 'spotfinder/diffraction/imagefiles.py' adding 'spotfinder/dxtbx_toolbox/__init__.py' adding 'spotfinder/dxtbx_toolbox/practical_heuristics.py' adding 'spotfinder/math_support/__init__.py' adding 'spotfinder/math_support/sphere_formulae.py' adding 'spotfinder/servers/__init__.py' adding 'spotfinder/servers/adsc_client.py' adding 'spotfinder/servers/apache.py' adding 'spotfinder/servers/apache_bcsb.py' adding 'spotfinder/servers/apache_dials.py' adding 'spotfinder/servers/apache_utils.py' adding 'spotfinder/servers/bcsb_client_example.py' adding 'spotfinder/servers/general_client_example.py' adding 'spotfinder/servers/mp_spotfinder_server_is_alive.py' adding 'spotfinder/servers/mp_spotfinder_server_read_file.py' adding 'spotfinder/servers/multipart_encoder.py' adding 'spotfinder/servers/pilatus_client.py' adding 'spotfinder/servers/specific_client_example.py' adding 'spotfinder/servers/spotfinder_server_client_push.py' adding 'spotfinder/servers/spotfinder_server_read_file.py' adding 'spotfinder/servers/thin_client.py' adding 'wxtbx/__init__.py' adding 'wxtbx/adp_statistics.py' adding 'wxtbx/anomalous_scattering.py' adding 'wxtbx/app.py' adding 'wxtbx/b_plot.py' adding 'wxtbx/bitmaps.py' adding 'wxtbx/browser.py' adding 'wxtbx/checklistctrl.py' adding 'wxtbx/custom_restraints.py' adding 'wxtbx/ensemble_validation.py' adding 'wxtbx/errors.py' adding 'wxtbx/heavy_atoms.py' adding 'wxtbx/icons.py' adding 'wxtbx/info_panels.py' adding 'wxtbx/layout.py' adding 'wxtbx/listeditor.py' adding 'wxtbx/metallicbutton.py' adding 'wxtbx/misc_dialogs.py' adding 'wxtbx/monitor.py' adding 'wxtbx/mtz_dump.py' adding 'wxtbx/path_dialogs.py' adding 'wxtbx/pdb_editor.py' adding 'wxtbx/polygon.py' adding 'wxtbx/polygon_db_viewer.py' adding 'wxtbx/process_control.py' adding 'wxtbx/qstat_view.py' adding 'wxtbx/segmentedctrl.py' adding 'wxtbx/sequence_view.py' adding 'wxtbx/symmetry_dialog.py' adding 'wxtbx/tables.py' adding 'wxtbx/utils.py' adding 'wxtbx/windows.py' adding 'wxtbx/wx4_compatibility.py' adding 'wxtbx/xtriage.py' adding 'wxtbx/command_line/__init__.py' adding 'wxtbx/command_line/anomalous_differences_histogram.py' adding 'wxtbx/command_line/b_plot.py' adding 'wxtbx/command_line/inspect_r_free_flags.py' adding 'wxtbx/command_line/loggraph.py' adding 'wxtbx/command_line/pdb_editor.py' adding 'wxtbx/command_line/pdb_statistics.py' adding 'wxtbx/command_line/plan_sad_experiment.py' adding 'wxtbx/command_line/plot_anomalous_scattering.py' adding 'wxtbx/command_line/show_file_info.py' adding 'wxtbx/command_line/wxpython.py' adding 'wxtbx/command_line/xtriage.py' adding 'wxtbx/phil_controls/__init__.py' adding 'wxtbx/phil_controls/array_label.py' adding 'wxtbx/phil_controls/boolctrl.py' adding 'wxtbx/phil_controls/choice.py' adding 'wxtbx/phil_controls/choice_multi.py' adding 'wxtbx/phil_controls/floatctrl.py' adding 'wxtbx/phil_controls/floats.py' adding 'wxtbx/phil_controls/intctrl.py' adding 'wxtbx/phil_controls/ints.py' adding 'wxtbx/phil_controls/misc_ctrls.py' adding 'wxtbx/phil_controls/numbers.py' adding 'wxtbx/phil_controls/path.py' adding 'wxtbx/phil_controls/simple_dialogs.py' adding 'wxtbx/phil_controls/space_group.py' adding 'wxtbx/phil_controls/strctrl.py' adding 'wxtbx/phil_controls/strings.py' adding 'wxtbx/phil_controls/symop.py' adding 'wxtbx/phil_controls/text_base.py' adding 'wxtbx/phil_controls/tree.py' adding 'wxtbx/phil_controls/tribool.py' adding 'wxtbx/phil_controls/unit_cell.py' adding 'wxtbx/plots/__init__.py' adding 'wxtbx/plots/emringer.py' adding 'wxtbx/plots/molprobity.py' adding 'wxtbx/reports/__init__.py' adding 'wxtbx/reports/blast.py' adding 'wxtbx/reports/pdb_symmetry.py' adding 'xcif/__init__.py' adding 'xcif/run_tests.py' adding 'xcif/benchmarks/__init__.py' adding 'xcif/benchmarks/run_benchmarks.py' adding 'xcif/regression/__init__.py' adding 'xcif/regression/tst_api_compat.py' adding 'xcif/regression/tst_bindings.py' adding 'xcif/regression/tst_example_parse.py' adding 'xcif/regression/tst_example_tokenize.py' adding 'xcif/regression/tst_gil_release.py' adding 'xcif/regression/tst_iotbx_cif_reader_engine.py' adding 'xcif/regression/tst_iotbx_cif_reader_parity.py' adding 'xcif/regression/tst_memory.py' adding 'xcif/regression/tst_non_strict_mode.py' adding 'xcif/regression/tst_parse_verify.py' adding 'xcif/regression/tst_pdb_coordinates.py' adding 'xcif/regression/tst_pdb_sf.py' adding 'xcif/regression/tst_quoted_string_delimiter.py' adding 'xcif/regression/tst_roundtrip.py' adding 'xcif/regression/tst_semicolon_field_strict.py' adding 'xcif/regression/tst_string_interning.py' adding 'xcif/regression/tst_utf8.py' adding 'cctbx-2023.12.dist-info/METADATA' adding 'cctbx-2023.12.dist-info/WHEEL' adding 'cctbx-2023.12.dist-info/top_level.txt' adding 'cctbx-2023.12.dist-info/RECORD' removing build/bdist.linux-loongarch64/wheel Successfully built cctbx-2023.12-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.13 with "installer" module dh_auto_build --sourcedirectory=dxtbx -- --name dxtbx pybuild --build -i python{version} -p "3.14 3.13" --name dxtbx --dir dxtbx --parallel=8 I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_dxtbx * Building wheel... Successfully built dxtbx-3.28.0-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module I: pybuild plugin_pyproject:142: Building wheel for python3.13 with "build" module I: pybuild base:385: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_dxtbx * Building wheel... Successfully built dxtbx-3.28.0-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.13 with "installer" module dh_auto_build -- --name cctbx -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 8" pybuild --build -i python{version} -p "3.14 3.13" --name cctbx -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 8" --parallel=8 I: pybuild base:385: cd '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && ./bin/libtbx.scons -j 8 scons: Reading SConscript files ... libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 libtbx.scons: OpenMP is disabled. BOOST_PYTHON_LIB_VERSION: boost_python314 BOOST_NUMPY_LIB_VERSION: boost_numpy314 BOOST_VERSION: 109000 Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cbflib.tst_memory' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o annlib_adaptbx/ann/ann_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -Iannlib_adaptbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/src -Iannlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/ann/ann_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o annlib_adaptbx/ann/boost_python/annlib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/usr/include/python3.14 -Iannlib_adaptbx/ann/boost_python/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/ann/boost_python/src -Iannlib_adaptbx/ann/boost_python/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/ann/boost_python/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/ann/boost_python/annlib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/blobs_cmd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/blobs_cmd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/asymmetric_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/skeletons.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/skeletons.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/dijkstra.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/dijkstra.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_reader.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/xplor/map_reader.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_writer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/xplor/map_writer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/cut.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/basic.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/basic.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering/it1992.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering/wk1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering/n_gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/fp_fdp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/fp_fdp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_73_84.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_73_84.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_85_92.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_85_92.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/icsd_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/icsd_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/covalent_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/covalent_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/neutron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/neutron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki.cpp g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_73_82.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/tiny_pse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/tiny_pse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/wavelengths.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/wavelengths.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/electron_scattering/peng1996.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/attenuation_coefficient.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/attenuation_coefficient.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/bricks.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/bricks.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/change_of_basis_op.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/group_codes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/group_codes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/hall_in.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/hall_in.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_tr.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/lattice_tr.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/miller.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/miller.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reciprocal_space_ref_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/row_echelon_solve.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/row_echelon_solve.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reference_settings/normalizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reference_settings/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/uctbx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/uctbx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/spoil_optimization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/spoil_optimization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/crystal_orientation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/crystal_orientation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o omptbx/stubs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/omptbx/stubs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread Create symlinks for: 'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm Create symlinks for: 'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/metric_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/utility_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/hybrid_times_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/meta_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/optional_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/rational_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/std_pair_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/tests/boost_thread_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/tests/python_streambuf_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/tests/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread boost_adaptbx/tests/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/tuple_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSWIG_PYTHON_STRICT_BYTE_CHAR -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/buffer_based_service.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/cbf_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/mar_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCBF_NO_REGEX -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/tst_memory.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ccp4io_adaptbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io_adaptbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io_adaptbx/fortran_call_stubs.c g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lm gcc -o ccp4io_adaptbx/printf_wrappers.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io_adaptbx/printf_wrappers.c g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/adp_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/adp_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/adp_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/aniso_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o cctbx/maptbx/skeletons.o cctbx/maptbx/dijkstra.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm Create symlinks for: 'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o bin/cctbx_blobs -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/maptbx/blobs_cmd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/isotropic_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/rigid_bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/rigu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/rigu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adptbx/boost_python/adptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/anharmonic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adptbx/boost_python/anharmonic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adptbx/boost_python/hirshfeld.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/array_family/boost_python/flex_miller_index.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/array_family/boost_python/flex_xray_scatterer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/emma_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/boost_python/emma_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/french_wilson_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/boost_python/french_wilson_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/orientation_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/boost_python/orientation_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/statistics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/boost_python/statistics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/covariance/boost_python/covariance_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/asu_clusters_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/asu_clusters_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/close_packing_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/close_packing_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/coordination_sequences_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/crystal_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/crystal_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/incremental_pairs_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/neighbors_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/neighbors_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/pair_tables_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/pair_tables_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/site_cluster_analysis_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/symmetry_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/symmetry_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/dmtbx/boost_python/dmtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/dmtbx/boost_python/triplet_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/chemical_elements_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/covalent_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/fp_fdp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/henke_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/icsd_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/neutron_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/sasaki_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/tiny_pse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/wavelengths_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/xray_scattering_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/convert_ccp4_symop_lib.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/find_distances.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/find_distances.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/getting_started.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/getting_started.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/sys_abs_equiv_space_groups.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry/boost_python/geometry_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::angle_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:75:65: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_angle_proxy") | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_misc.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:14: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::map; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:129:23: required from here 129 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 130 | "bond_params_table") | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:232:25: required from here 232 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 233 | "shared_bond_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:340:25: required from here 340 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 341 | "shared_bond_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:12: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity.h:84:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for(int i=0;i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity.h:108:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | for(int i=0;i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_similarity_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:55:44: required from here 54 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | bond_similarity_proxy, rir>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | "shared_bond_similarity_proxy"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny, 2>; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:79:54: required from here 78 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | af::tiny, 2>, rbv>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 80 | "sites_array"); | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_sorted.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h: In instantiation of ‘int cctbx::crystal::direct_space_asu::asu_mappings::find_i_sym(unsigned int, const cctbx::sgtbx::rt_mx&) const [with FloatType = double; IntShiftType = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/pair_tables.h:643:46: required from ‘bool cctbx::crystal::pair_asu_table::process_pair(unsigned int, unsigned int, const cctbx::sgtbx::rt_mx&) [with FloatType = double; IntShiftType = int]’ 643 | int j_sym = asu_mappings_->find_i_sym(j_seq, rt_mx_j); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/pair_tables.h:543:35: required from ‘cctbx::crystal::pair_asu_table& cctbx::crystal::pair_asu_table::add_pair(const scitbx::af::tiny&) [with FloatType = double; IntShiftType = int]’ 543 | bool is_new = process_pair(i_seqs[0], i_seqs[1], rt_mx_ji); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_sorted.h:16:30: required from here 16 | pair_asu_table.add_pair(bond_simple_proxies[i].i_seqs); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:859:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 859 | for(int i_sym=0; i_sym, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 869 | for(int i_sym=0; i_sym::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::chirality_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:75:60: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_chirality_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/geometry_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:2: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/motif_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/motif_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:12: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = dihedral_proxy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:110:17: required from here 110 | shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::dihedral_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:84:65: required from here 84 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 85 | "shared_dihedral_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:92:25: required from here 92 | shared_w_t::wrap("shared_nonbonded_simple_proxy") | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:125:25: required from here 125 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 126 | "shared_nonbonded_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/planarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::parallelity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp:82:60: required from here 82 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 83 | "shared_parallelity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/neighbors_fast.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/pair_tables.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = cctbx::cartesian; CubicleContentType = std::vector; FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/neighbors_fast.h:77:34: required from ‘cctbx::crystal::neighbors::fast_pair_generator::fast_pair_generator(const boost::shared_ptr >&, const FloatType&, bool, const FloatType&, const FloatType&) [with FloatType = double; IntShiftType = int]’ 77 | cubicles_.i_cubicle(mappings[mi.i_seq][mi.i_sym].mapped_site())); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:80:27: required from here 80 | min_cubicle_edge); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::planarity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:62:23: required from here 62 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 63 | "shared_planarity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/asymmetric_map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/bcr/bcr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/bcr/bcr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/coordinate_transformers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/grid_tags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/gridding.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/maptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/misc.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/peak_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/pymol_interface.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/structure_factors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/masks/boost_python/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/math/time_trigonometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/math/time_trigonometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_timer -lm g++ -o cctbx/merging/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/merging/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/amplitude_normalisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/change_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/change_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/expand_to_p1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/f_calc_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/f_calc_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/lookup_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/lookup_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/merge_equivalents.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/miller_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/miller_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_integrator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/phase_integrator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_transfer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/phase_transfer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/slices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/slices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/multipolar/aspherical_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/multipolar/aspherical_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/brick.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/brick.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/change_of_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/phase_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/search_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/sgtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/tensors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/translation_search/boost_python/fast_nv1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/translation_search/boost_python/fast_terms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lm g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/translation_search/boost_python/symmetry_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/translation_search/boost_python/translation_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/niggli_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/boost_python/niggli_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/boost_python/uctbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_SINGLEFILE_NCDIST -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/determine_unit_cell/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/conversions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/conversions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/curvatures_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/extinction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/extinction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/f_model_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/curvatures_simple.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/curvatures_simple.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/gradients_direct.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/each_hkl_gradients_direct.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/fast_gradients.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/fast_gradients.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/f_model.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/f_model_bpl.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/f_model.h:4: /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/f_model.h: In instantiation of ‘cctbx::xray::f_model_core_data::f_model_core_data cctbx::xray::f_model_core_data::f_model_core_data::select(const scitbx::af::const_ref&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/f_model_bpl.cpp:174:32: required from here 174 | .def("select", &w_t::select) | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/f_model.h:732:38: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | CCTBX_ASSERT( iselection[ii]::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/grouped_data.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/gradients_direct.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/gradients_direct.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/parameter_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/parameter_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:14, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:4: /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sampled_model_density.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:257:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for (long int ii=0;ii::r_abs() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:69:31: required from here 69 | .def("r_abs", &w_t::r_abs) | ^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:271:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for (long int ii=0;ii cctbx::xray::grouped_data::merger::combine_obs(long int) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:258:24: required from ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’ 258 | tmp_result = combine_obs( ii ); | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:213:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 213 | for (int ii=1;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int ii=1;ii::unmerged_data(scitbx::af::const_ref >, scitbx::af::const_ref >, const cctbx::sgtbx::space_group&, const bool&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::unmerged_data; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<4>::apply::execute(PyObject*, t0, t1, t2, t3) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; W = cctbx::xray::grouped_data::unmerged_data; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:27:15: required from here 26 | class_("unmerged_data", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | bool const& | ~~~~~~~~~~~ 31 | > | ~ 32 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 33 | arg("asu_hkl"), | ~~~~~~~~~~~~~~~ 34 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 35 | arg("anomalous_flag") ))) | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:54:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 54 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for (int ii=0; ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:67:11: note: in expansion of macro ‘CCTBX_ASSERT’ 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::merger::merger(scitbx::af::const_ref >, scitbx::af::const_ref, scitbx::af::const_ref, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::merger; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref&; t2 = const scitbx::af::const_ref&; t3 = const cctbx::sgtbx::space_group&; t4 = const bool&; t5 = const cctbx::uctbx::unit_cell&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; W = cctbx::xray::grouped_data::merger; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:54:15: required from here 53 | class_("merger", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 | cctbx::uctbx::unit_cell const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | > | ~ 61 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 62 | arg("i_obs"), | ~~~~~~~~~~~~~ 63 | arg("s_obs"), | ~~~~~~~~~~~~~ 64 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 65 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 66 | arg("unit_cell") | ~~~~~~~~~~~~~~~~ 67 | ))) | ~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:151:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | for (int ii=0;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 167 | for (int ii=0; ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sampling_base.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sampling_base.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/parameter_map.h: In instantiation of ‘void cctbx::xray::parameter_map::init_scatterer_part(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/parameter_map.h:54:7: required from ‘cctbx::xray::parameter_map::parameter_map(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’ 54 | init_scatterer_part(scatterers); | ^~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0) [with A0 = boost::python::objects::reference_to_value, scitbx::af::trivial_accessor>&>; Value = cctbx::xray::parameter_map >; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<1>::apply::execute(PyObject*, t0) [with Holder = boost::python::objects::value_holder > >; ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; PyObject = _object; t0 = const scitbx::af::const_ref, scitbx::af::trivial_accessor>&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; Arity = boost::mpl::size, scitbx::af::trivial_accessor>&> >; Holder = boost::python::objects::value_holder > >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = cctbx::xray::parameter_map >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:46:11: required from ‘static void cctbx::xray::boost_python::parameter_map_wrapper::wrap(const char*) [with XRayScattererType = cctbx::xray::scatterer<>]’ 45 | class_("parameter_map", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 | .def(init const &>(( | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 | arg("scatterers")))) | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:60:50: required from here 60 | parameter_map_wrapper >::wrap("parameter_map"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/parameter_map.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for(int i_sc=0; i_sc < scatterers.size(); ++i_sc) { | ~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/sampled_model_density.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sampled_model_density.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sampling_base.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::henke::table]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scatterer.cpp:349:54: required from here 349 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::sasaki::table]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scatterer.cpp:353:55: required from here 353 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sigmaa.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sigmaa.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/structure_factors_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const cctbx::xray::scattering_type_registry::unique_counts_t&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::xray::scatterer_flags; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:142:44: required from here 140 | class_ wrapper = scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | scatterer_flags, | ~~~~~~~~~~~~~~~~ 142 | return_internal_reference<> >::wrap("shared_scatterer_flags"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/sigmaa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sigmaa.cpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/structure_factors_simple.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/twin_components.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_components.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_components.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_components.cpp:91:77: required from here 91 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_components.cpp:92:78: required from here 92 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/xray_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/observations/boost_python/observations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/observations/boost_python/observations_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:14, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:4: /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -o chiltbx/handle_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/chiltbx/handle_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::shared cctbx::xray::twin_targets::twin_completion::get_free_model_selection(scitbx::af::const_ref >, const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:42:50: required from here 42 | .def("get_free_model_selection", &w_t::get_free_model_selection) | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:128:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | CCTBX_ASSERT( index < flags.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:128:11: note: in expansion of macro ‘CCTBX_ASSERT’ 128 | CCTBX_ASSERT( index < flags.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:182:39: required from here 182 | .def("r_intensity_abs", &w_t::r_intensity_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:559:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:559:6: note: in expansion of macro ‘CCTBX_ASSERT’ 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:560:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:560:6: note: in expansion of macro ‘CCTBX_ASSERT’ 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:561:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:561:6: note: in expansion of macro ‘CCTBX_ASSERT’ 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:189:38: required from here 189 | .def("r_intensity_sq", &w_t::r_intensity_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:604:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:604:6: note: in expansion of macro ‘CCTBX_ASSERT’ 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:605:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:605:6: note: in expansion of macro ‘CCTBX_ASSERT’ 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:606:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:606:6: note: in expansion of macro ‘CCTBX_ASSERT’ 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:196:39: required from here 196 | .def("r_amplitude_abs", &w_t::r_amplitude_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:649:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:649:6: note: in expansion of macro ‘CCTBX_ASSERT’ 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:650:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:650:6: note: in expansion of macro ‘CCTBX_ASSERT’ 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:651:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:651:6: note: in expansion of macro ‘CCTBX_ASSERT’ 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:203:38: required from here 203 | .def("r_amplitude_sq", &w_t::r_amplitude_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:697:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:697:6: note: in expansion of macro ‘CCTBX_ASSERT’ 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:698:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:698:6: note: in expansion of macro ‘CCTBX_ASSERT’ 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:699:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:699:6: note: in expansion of macro ‘CCTBX_ASSERT’ 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:263:45: required from here 263 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:997:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:997:19: note: in expansion of macro ‘CCTBX_ASSERT’ 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1003:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1003:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1006:41: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1006:13: note: in expansion of macro ‘CCTBX_ASSERT’ 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1010:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1010:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:275:45: required from here 275 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:936:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:936:17: note: in expansion of macro ‘CCTBX_ASSERT’ 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:942:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:942:19: note: in expansion of macro ‘CCTBX_ASSERT’ 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:945:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:945:17: note: in expansion of macro ‘CCTBX_ASSERT’ 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:948:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:948:17: note: in expansion of macro ‘CCTBX_ASSERT’ 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ g++ -o cma_es/cma/cmaes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cma_es/cma/cmaes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o chiltbx/handle_test -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread chiltbx/handle_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘cctbx::xray::twin_targets::hemihedral_r_values::hemihedral_r_values(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value&>; Value = cctbx::xray::twin_targets::hemihedral_r_values; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<5>::apply::execute(PyObject*, t0, t1, t2, t3, t4) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&; t4 = const scitbx::mat3&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; W = cctbx::xray::twin_targets::hemihedral_r_values; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:169:13: required from here 168 | class_("hemihedral_r_values", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | .def(init< | ~~~~^~~~~~ 170 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 1 obs indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 2 calc indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | sgtbx::space_group const&, // 3 space group | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | bool const&, // 4 anomalous flag | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | scitbx::mat3 const& // 5 twin law | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 | > | ~ 176 | ((arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~ 177 | arg("hkl_calc"), | ~~~~~~~~~~~~~~~~ 178 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 179 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 180 | arg("twin_law") | ~~~~~~~~~~~~~~~ 181 | ))) | ~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:544:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 544 | for (long ii=0;ii::refine(const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/quadrature.h:523:14: required from ‘scitbx::math::quadrature::gauss_legendre_engine::gauss_legendre_engine(const int&) [with FloatType = double]’ 523 | x = refine( start_guess ); | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1070:68: required from ‘cctbx::xray::twin_targets::single_twin_likelihood::single_twin_likelihood(const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const bool&, const bool&, const FloatType&, const FloatType&, const FloatType&, const int&) [with FloatType = double]’ 1070 | scitbx::math::quadrature::gauss_legendre_engine tmp_gle(n_quad_); | ^~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8, A9, A10, A11, A12, A13) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; A9 = boost::python::objects::reference_to_value; A10 = boost::python::objects::reference_to_value; A11 = boost::python::objects::reference_to_value; A12 = boost::python::objects::reference_to_value; A13 = boost::python::objects::reference_to_value; Value = cctbx::xray::twin_targets::single_twin_likelihood; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<14>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8, t9, t10, t11, t12, t13) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector14; PyObject = _object; t0 = const double&; t1 = const double&; t2 = const double&; t3 = const double&; t4 = const double&; t5 = const double&; t6 = const double&; t7 = const double&; t8 = const bool&; t9 = const bool&; t10 = const double&; t11 = const double&; t12 = const double&; t13 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector14; NArgs = boost::mpl::size >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init; W = cctbx::xray::twin_targets::single_twin_likelihood; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:343:14: required from here 342 | class_("single_twin_likelihood", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | .def(init< | ~~~~^~~~~~ 344 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 | bool const&, bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | double const&, int const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 | > | ~ 352 | ((arg("i_obs1"), arg("s_obs1"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | arg("i_obs2"), arg("s_obs2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 | arg("f_calc1"), arg("f_calc2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 | arg("eps1"), arg("eps2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | arg("centric1"),arg("centric2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 | arg("alpha"), arg("beta"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | arg("twin_fraction"), arg("n_quad") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | )) | ~~ 360 | ) | ~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/quadrature.h:546:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 546 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/compression.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘unsigned int dxtbx::boost_python::cbf_decompress(const char*, std::size_t, int*, std::size_t)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:124:50: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | while ((j < packed_sz) && ((values - original) < values_sz)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘void dxtbx::boost_python::rod_TY5_TY6_decompress(int*, const char*, const char*, int, int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:207:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 207 | for (size_t iy = 0; iy < slow; iy++) { | ~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:228:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 228 | for (int k = 0; k < nblock; k++) { | ~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:254:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 254 | for (int j = 0; j < nbit; j++) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:261:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 261 | for (int j = 0; j < BLOCKSIZE; j++) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:282:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < nrest; i++) { | ~~^~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/flumpy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/imageset_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘scitbx::af::flex_int dxtbx::boost_python::uncompress(const boost::python::api::object&, const int&, const int&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 183 | DXTBX_ASSERT(nn == (slow * fast)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:5: note: in expansion of macro ‘DXTBX_ASSERT’ 183 | DXTBX_ASSERT(nn == (slow * fast)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘void dxtbx::boost_python::radial_average(scitbx::af::versa >&, scitbx::af::versa >&, const scitbx::vec2&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, double, double, const scitbx::vec2&, const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:218:43: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 218 | for (std::size_t y = upper_left[1]; y < lower_right[1]; y++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:219:45: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 219 | for (std::size_t x = upper_left[0]; x < lower_right[0]; x++) { g++ -o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/image_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = bool; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = signed char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = float; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = double; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:138:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:140:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 140 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:166:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:168:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 168 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = long unsigned int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:191:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:193:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:215:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:217:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 217 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:113:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:115:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:24, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:25: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; g++ -o dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/nexus_ext.cc /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp:10:1: warning: ‘typedef’ was ignored in this declaration 10 | typedef struct cbf_handle_struct; | ^~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:27: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = bool]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = int]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = double]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/masking/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/beam.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/goniometer_shadow_masking.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:30: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::ImageBuffer dxtbx::ImageSet::get_raw_data(std::size_t)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:651:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | if (data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::Image dxtbx::ImageSet::get_raw_data_as_double(std::size_t)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1119:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1119 | if (double_raw_data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1206:12: note: by ‘dxtbx::ImageSet dxtbx::ImageGrid::partial_set(std::size_t, std::size_t) const’ 1206 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1142:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1142:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1156:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1156:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1477:12: note: by ‘dxtbx::ImageSet dxtbx::ImageSequence::partial_set(std::size_t, std::size_t) const’ 1477 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1241:23: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1241 | if (data.size() != scan->get_num_images()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1280:26: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1280 | if (indices.size() != scan->get_num_images()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘void dxtbx::ImageSequence::set_scan(const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1402:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1402 | if (scan->get_num_images() != size()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1418:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1418:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:469:56: required from here 469 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:471:55: required from here 471 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:473:53: required from here 473 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::BeamBase; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:250:56: required from here 250 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 251 | obj, | ~~~~ 252 | boost::python::extract(models[0])(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 | &ImageSetData::set_beam); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Detector; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:254:56: required from here 254 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 255 | obj, | ~~~~ 256 | boost::python::extract(models[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | &ImageSetData::set_detector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Goniometer; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:258:58: required from here 258 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 259 | obj, | ~~~~ 260 | boost::python::extract(models[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 | &ImageSetData::set_goniometer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Scan; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:262:52: required from here 262 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 263 | obj, | ~~~~ 264 | boost::python::extract(models[3]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 | &ImageSetData::set_scan); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ g++ -o dxtbx/src/dxtbx/model/boost_python/detector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; g++ -o dxtbx/src/dxtbx/model/boost_python/experiment.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_tuple(dxtbx::model::Beam&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:209:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 209 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_list(dxtbx::model::Beam&, boost::python::list)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:219:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 219 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static boost::python::tuple dxtbx::model::boost_python::PolychromaticBeamPickleSuite::getstate(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:302:32: warning: unused variable ‘beam’ [-Wunused-variable] 302 | const PolychromaticBeam &beam = | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static void dxtbx::model::boost_python::PolychromaticBeamPickleSuite::setstate(boost::python::api::object, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:308:26: warning: unused variable ‘beam’ [-Wunused-variable] 308 | PolychromaticBeam &beam = boost::python::extract(obj)(); | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_tuple(dxtbx::model::CrystalBase&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:119:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 119 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_list(dxtbx::model::CrystalBase&, boost::python::list)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:129:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 129 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_B_covariance_from_tuple(dxtbx::model::CrystalBase&, boost::python::api::object)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:141:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 141 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:22: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:23: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:19: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘void dxtbx::model::boost_python::detector_detail::node_from_dict(boost::python::dict, dxtbx::model::Detector::Node*, boost::python::list, scitbx::af::ref)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:88:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:88:9: note: in expansion of macro ‘DXTBX_ASSERT’ 88 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:9: note: in expansion of macro ‘DXTBX_ASSERT’ 89 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:100:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 100 | for (std::size_t i = 0; i < boost::python::len(obj["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:124:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 124 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:134:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 134 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict, const dxtbx::format::Image&, const dxtbx::format::Image&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:158:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 158 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:168:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 168 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In static member function ‘static void dxtbx::model::boost_python::detector_detail::DetectorPickleSuite::copy_node(dxtbx::model::Detector::Node::pointer, boost::python::dict, boost::python::list)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:228:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 228 | for (std::size_t i = 0; i < boost::python::len(node["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment_list.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/history.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/history.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment_list.h:23, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment_list.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList* dxtbx::model::boost_python::make_experiment_list(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:30:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 30 | for (std::size_t i = 0; i < boost::python::len(items); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_setitem(dxtbx::model::ExperimentList&, int, dxtbx::model::Experiment)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:174:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::Experiment& dxtbx::model::boost_python::experiment_list_getitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:184:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList dxtbx::model::boost_python::experiment_list_getitem_slice(const dxtbx::model::ExperimentList&, boost::python::slice)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:193:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 193 | for (std::size_t i = as.start; i < as.stop && i < self.size(); i += as.step) { | ~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_delitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:203:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_tuple(dxtbx::model::Goniometer&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:79:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 79 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_list(dxtbx::model::Goniometer&, boost::python::list)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/model_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/panel.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/parallax_correction.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:16: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc: In function ‘T* dxtbx::model::boost_python::from_dict(boost::python::dict) [with T = dxtbx::model::MultiAxisGoniometer]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:105:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 105 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:21: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc:14: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/spectrum.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:19: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec2.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In static member function ‘static void dxtbx::model::boost_python::ScanPickleSuite::setstate(dxtbx::model::Scan&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:41: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:7: note: in expansion of macro ‘DXTBX_ASSERT’ 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::dict dxtbx::model::boost_python::MaptoPythonDict(dxtbx::model::ExpImgRangeMap)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:187:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | for (int k = 0; k < val.size(); ++k) { | ~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::list dxtbx::model::boost_python::get_valid_image_ranges(dxtbx::model::Scan&, std::string)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:374:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 374 | for (int k = 0; k < ranges.size(); ++k) { | ~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:24: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T* dxtbx::af::flex_table_suite::make_flex_table(boost::python::list) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1233:42: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:416:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 416 | for (std::size_t i = 0; i < len(columns); ++i) { | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc:16: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::setitem_row(T&, typename T::size_type, boost::python::dict) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; typename T::size_type = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1252:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:525:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 525 | for (std::size_t i = 0; i < len(row); ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T dxtbx::af::flex_table_suite::select_cols_tuple(const T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1265:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:747:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 747 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::set_selected_cols_tuple(T&, boost::python::tuple, const T&) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1269:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:838:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 838 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::del_selected_cols_tuple(T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1273:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 | .def("del_selected", &del_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 | .def("del_selected", &del_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 | .def("del_selected", &del_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 | .def("del_selected", &del_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:890:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 890 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/spectrum.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o lib/libcbf-private.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libcbf-private.so.0 cbflib_adaptbx/detectors/mar_adaptor.o cbflib_adaptbx/detectors/cbf_adaptor.o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o cbflib_adaptbx/detectors/buffer_based_service.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lboost_thread -lhdf5 -lcbf Create symlinks for: 'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so.0'->'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so'->'lib/libcbf-private.so.0.0.1' g++ -o exe_dev/cbflib.tst_memory -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cbflib_adaptbx/detectors/tst_memory.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lcbf -lcbf-private -lm -lhdf5 g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/convert_ccp4_symop_lib.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/find_distances.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/getting_started.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/lattice_symmetry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/sym_equiv_sites.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/sys_abs_equiv_space_groups.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o fable/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_10x20.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_10x20.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_8x13.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_8x13.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_9x15.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_9x15.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/fonts_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/fonts_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/str_ref.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/format.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp: In function ‘unsigned int fable::ext::get_code_stop(const boost::python::api::object&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:24:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | TBXX_ASSERT(stop <= len_code); | ~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp: In function ‘int fable::ext::floating_point_scan_after_dot(const boost::python::api::object&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 71 | if (i < code_stop) { | ~~^~~~~~~~~~~ g++ -o gltbx/gl_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/gl_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_08_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_08_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_09_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_09_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_10_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_10_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:23: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ In file included from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:11: /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec2&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec2]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec3&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec3]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ g++ -o gltbx/gl_functions_11_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_11_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_12_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_12_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_13_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_13_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_14_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_14_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_15_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_15_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/glu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/quadrics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/quadrics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/util_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/util_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/viewer_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/viewer_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/ccp4_map/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/cif/boost_python/cif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/cif/boost_python/cif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/bruker.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/bruker.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/bruker_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/detectors_ext.cpp /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_set_grid(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 178 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:213:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 213 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 215 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:216:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 216 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_box(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:245:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 278 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:280:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 280 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:281:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 281 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_p1_cell(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:311:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/image_divider.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/image_divider.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/dsn6/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/dsn6/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/misc/boost_python/dtrek_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/misc/boost_python/scalepack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/batch_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/crystal_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch_bpl.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::batch; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch_bpl.cpp:78:60: required from here 78 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 79 | "shared_batch"); | ~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp: In member function ‘void iotbx::mtz::column::set_reals(const scitbx::af::const_ref&, const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp:253:48: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp:253:5: note: in expansion of macro ‘IOTBX_ASSERT’ 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column_bpl.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::column; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column_bpl.cpp:76:60: required from here 76 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 77 | "shared_column"); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal_bpl.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::crystal; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal_bpl.cpp:42:60: required from here 42 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 43 | "shared_crystal"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/mtz/dataset.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/dataset_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/object.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/object_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/sym_equiv.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp: In member function ‘void iotbx::mtz::object::replace_miller_indices(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:433:40: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:433:5: note: in expansion of macro ‘IOTBX_ASSERT’ 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:435:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for(int i_refl=0;i_refl iotbx::mtz::object::extract_integers(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:624:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 624 | for(int i=0;i iotbx::mtz::object::extract_reals(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:684:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 684 | for(int i=0;i&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::dataset; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset_bpl.cpp:43:60: required from here 43 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 44 | "shared_dataset"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object_bpl.cpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/pdb/common_residue_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/common_residue_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/construct_hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/construct_hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atom_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:244:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:250:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 250 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:259:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 259 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:263:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 263 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_select.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h: At global scope: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_write.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hybrid_36_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hybrid_36_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/cassert:46, from /usr/include/boost/function/function_template.hpp:20, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:87:36: required from here 87 | class_ wa = wat::wrap("af_shared_atom"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom_with_labels; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:91:44: required from here 91 | class_ wawl = wawl_t::wrap("af_shared_atom_with_labels"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hybrid_36_c.c g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hybrid_36_cpp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable iotbx/pdb/hybrid_36_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem.hpp:10, from iotbx/pdb/hybrid_36_fem.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ g++ -o iotbx/pdb/input.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/input.cpp In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/file_utils.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/input.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/input_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/input_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/input_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread iotbx/pdb/hybrid_36_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/overall_counts.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/rna_dna_atom_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/write_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/write_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/xray_structure_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/shelx/shelx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/wildcard_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/wildcard_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/xplor/boost_python/xplor_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libann_adaptor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libann_adaptor.so.0 annlib_adaptbx/ann/ann_adaptor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lann-cctbx Create symlinks for: 'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so.0'->'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so'->'lib/libann_adaptor.so.0.0.1' g++ -o lib/annlib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=annlib_ext.so.0 annlib_adaptbx/ann/boost_python/annlib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lann-cctbx -lann_adaptor -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so.0'->'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so'->'lib/annlib_ext.so.0.0.1' g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/xray_structure.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/xray_structure_bpl.cpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' g++ -o lib/cbflib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cbflib_ext.so.0 cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lcbf-private -lcbf -lboost_thread -lboost_python314 -lm -lhdf5 Create symlinks for: 'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' g++ -o lib/libccp4io.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libccp4io.so.0 ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/printf_wrappers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lm -lccp4c Create symlinks for: 'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so.0'->'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so'->'lib/libccp4io.so.0.0.1' g++ -o scitbx/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/ccp4io_adaptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=ccp4io_adaptbx_ext.so.0 ccp4io_adaptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lccp4io -lccp4c -lssm -lmmdb2 -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so.0'->'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so'->'lib/cbflib_ext.so.0.0.1' g++ -o scitbx/boost_python/slice.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/slice.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so.0'->'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so'->'lib/ccp4io_adaptbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/cma_es_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cma_es_ext.so.0 cma_es/cma_es_ext.o cma_es/cma/cmaes.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so.0'->'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so'->'lib/cma_es_ext.so.0.0.1' g++ -o lib/dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_ext.so.0 dxtbx/src/dxtbx/boost_python/ext.o dxtbx/src/dxtbx/boost_python/compression.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python314 -lcbf g++ -o lib/dxtbx_format_image_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_image_ext.so.0 dxtbx/src/dxtbx/format/boost_python/image_ext.o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python314 -lcbf -lhdf5 Create symlinks for: 'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so.0'->'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so'->'lib/dxtbx_ext.so.0.0.1' g++ -o lib/dxtbx_format_nexus_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_nexus_ext.so.0 dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python314 -lcbf -lhdf5 g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=fable_ext.so.0 fable/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so.0'->'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so'->'lib/dxtbx_format_nexus_ext.so.0.0.1' g++ -o lib/iotbx_ccp4_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_ccp4_map_ext.so.0 iotbx/ccp4_map/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lccp4c -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o ucif/cifParser.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ucif/cifParser.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so.0'->'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so'->'lib/iotbx_ccp4_map_ext.so.0.0.1' g++ -o ucif/cifLexer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ucif/cifLexer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so.0'->'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so'->'lib/dxtbx_format_image_ext.so.0.0.1' Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/libiotbx_mtz.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_mtz.so.0 iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lccp4io -lccp4c -lm -lboost_thread Create symlinks for: 'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so.0'->'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so'->'lib/libiotbx_mtz.so.0.0.1' g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -shared -rdynamic -std=c++14 -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o spotfinder/core_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/iotbx_cif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_cif_ext.so.0 iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm -lantlr3c g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so.0'->'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so'->'lib/iotbx_cif_ext.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/dxtbx_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_model_ext.so.0 dxtbx/src/dxtbx/model/boost_python/beam.o dxtbx/src/dxtbx/model/boost_python/spectrum.o dxtbx/src/dxtbx/model/boost_python/goniometer.o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o dxtbx/src/dxtbx/model/boost_python/panel.o dxtbx/src/dxtbx/model/boost_python/detector.o dxtbx/src/dxtbx/model/boost_python/scan.o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o dxtbx/src/dxtbx/model/boost_python/crystal.o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o dxtbx/src/dxtbx/model/boost_python/history.o dxtbx/src/dxtbx/model/boost_python/experiment.o dxtbx/src/dxtbx/model/boost_python/experiment_list.o dxtbx/src/dxtbx/model/boost_python/model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python314 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' g++ -o lib/dxtbx_imageset_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_imageset_ext.so.0 dxtbx/src/dxtbx/boost_python/imageset_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python314 -lcbf -lhdf5 -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' g++ -o lib/gltbx_glu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_glu_ext.so.0 gltbx/glu_ext.o gltbx/glu_defines_00_bpl.o gltbx/glu_defines_01_bpl.o gltbx/glu_functions_00_bpl.o gltbx/glu_functions_01_bpl.o gltbx/glu_functions_02_bpl.o gltbx/glu_functions_03_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so.0'->'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so'->'lib/gltbx_glu_ext.so.0.0.1' g++ -o lib/gltbx_viewer_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_viewer_utils_ext.so.0 gltbx/viewer_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' g++ -o lib/gltbx_gl_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_gl_ext.so.0 gltbx/gl_ext.o gltbx/gl_defines_00_bpl.o gltbx/gl_defines_01_bpl.o gltbx/gl_defines_02_bpl.o gltbx/gl_defines_03_bpl.o gltbx/gl_defines_04_bpl.o gltbx/gl_defines_05_bpl.o gltbx/gl_defines_06_bpl.o gltbx/gl_defines_07_bpl.o gltbx/gl_functions_00_bpl.o gltbx/gl_functions_01_bpl.o gltbx/gl_functions_02_bpl.o gltbx/gl_functions_03_bpl.o gltbx/gl_functions_04_bpl.o gltbx/gl_functions_05_bpl.o gltbx/gl_functions_06_bpl.o gltbx/gl_functions_07_bpl.o gltbx/gl_functions_08_bpl.o gltbx/gl_functions_09_bpl.o gltbx/gl_functions_10_bpl.o gltbx/gl_functions_11_bpl.o gltbx/gl_functions_12_bpl.o gltbx/gl_functions_13_bpl.o gltbx/gl_functions_14_bpl.o gltbx/gl_functions_15_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so.0'->'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so'->'lib/gltbx_viewer_utils_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so.0'->'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so'->'lib/gltbx_gl_ext.so.0.0.1' g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/dxtbx_masking_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_masking_ext.so.0 dxtbx/src/dxtbx/masking/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5 Create symlinks for: 'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so.0'->'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so'->'lib/dxtbx_model_ext.so.0.0.1' g++ -o lib/gltbx_fonts_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_fonts_ext.so.0 gltbx/fonts_ext.o gltbx/font_ucs_8x13.o gltbx/font_ucs_9x15.o gltbx/font_ucs_10x20.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o cctbx/uctbx/boost_python/niggli_reduction.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so.0'->'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so'->'lib/gltbx_fonts_ext.so.0.0.1' g++ -o lib/iotbx_mtz_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_mtz_ext.so.0 iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_mtz -lcctbx -lccp4io -lccp4c -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o lib/dxtbx_flumpy.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_flumpy.so.0 dxtbx/src/dxtbx/boost_python/flumpy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python314 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so.0'->'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so'->'lib/iotbx_mtz_ext.so.0.0.1' g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so.0'->'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so'->'lib/dxtbx_masking_ext.so.0.0.1' g++ -o lib/gltbx_util_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_util_ext.so.0 gltbx/util_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so.0'->'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so'->'lib/dxtbx_flumpy.so.0.0.1' g++ -o lib/gltbx_quadrics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_quadrics_ext.so.0 gltbx/quadrics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so.0'->'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so'->'lib/gltbx_util_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so.0'->'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so'->'lib/gltbx_quadrics_ext.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_bcr_bcr_ext.so.0 cctbx/maptbx/bcr/bcr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/hough.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/hough.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so.0'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/spotfilter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/spotfilter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/masks/atom_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/masks/atom_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' g++ -o mmtbx/tls/decompose.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/decompose.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/dps_core.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/dps_core.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/directional_fft.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/directional_fft.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libspotfinder.so.0 spotfinder/core_toolbox/spot.o spotfinder/core_toolbox/libdistl.o spotfinder/core_toolbox/hough.o spotfinder/core_toolbox/distl.o spotfinder/core_toolbox/spotfilter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so.0'->'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so'->'lib/libspotfinder.so.0.0.1' g++ -o lib/libdxtbxspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libdxtbxspotfinder.so.0 spotfinder/dxtbx_toolbox/libdistl.o spotfinder/dxtbx_toolbox/distl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lspotfinder -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so.0'->'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so'->'lib/libdxtbxspotfinder.so.0.0.1' g++ -o rstbx/indexing_api/indexing_api.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/indexing_api.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/diffraction/ewald_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/ewald_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libmmtbx_tls.so.0.0.1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libmmtbx_tls.so.0 mmtbx/tls/decompose.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lm Create symlinks for: 'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so.0'->'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so'->'lib/libmmtbx_tls.so.0.0.1' g++ -o rstbx/diffraction/partial_spot_position_partial_H.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/partial_spot_position_partial_H.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' g++ -o scitbx/minpack/raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/slatec/lib_c.c Create symlinks for: 'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so.0'->'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so'->'lib/dxtbx_imageset_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lm Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lm Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/librstbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=librstbx.so.0 rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/indexing_api/indexing_api.o rstbx/diffraction/ewald_sphere.o rstbx/diffraction/partial_spot_position_partial_H.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lcctbx -lm Create symlinks for: 'lib/librstbx.so.0.0.1' 'lib/librstbx.so.0'->'lib/librstbx.so.0.0.1' 'lib/librstbx.so'->'lib/librstbx.so.0.0.1' g++ -o smtbx/refinement/constraints/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/alignment/alignment_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/alignment/alignment_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/building/loop_closure/ccd_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/building/loop_closure/ccd_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libmmtbx_masks.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libmmtbx_masks.so.0 mmtbx/masks/atom_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm Create symlinks for: 'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so.0'->'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so'->'lib/libmmtbx_masks.so.0.0.1' g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/bulk_solvent/bulk_solvent_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/bulk_solvent/bulk_solvent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/den/boost_python/den_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/den/boost_python/den_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/secondary_structure/dssp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/secondary_structure/dssp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/dynamics/dynamics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/dynamics/dynamics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/scaled_adp.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o mmtbx/dynamics/dynamics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/dynamics/dynamics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/f_model/f_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/f_model/f_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry/boost_python/asa_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/asa_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/den/den.h:2, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/den/boost_python/den_ext.cpp:12: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::den::den_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/den/boost_python/den_ext.cpp:53:78: required from here 53 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 54 | "shared_den_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_alignment_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_alignment_ext.so.0 mmtbx/alignment/alignment_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so.0'->'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so'->'lib/mmtbx_alignment_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/clash_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/clash_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_dssp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dssp_ext.so.0 mmtbx/secondary_structure/dssp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so.0'->'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so'->'lib/mmtbx_dssp_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/indexing_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_dynamics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dynamics_ext.so.0 mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so.0'->'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so'->'lib/mmtbx_dynamics_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/primitive_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/primitive_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_building_loop_closure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_building_loop_closure_ext.so.0 mmtbx/building/loop_closure/ccd_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -liotbx_pdb -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so.0'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/shared_types_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/asa_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/extract.hpp:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/clash_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_geometry_primitive_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_primitive_ext.so.0 mmtbx/geometry/boost_python/primitive_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so.0'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/sphere_surface_sampling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_den_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_den_restraints_ext.so.0 mmtbx/den/boost_python/den_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so.0'->'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so'->'lib/mmtbx_den_restraints_ext.so.0.0.1' g++ -o mmtbx/hydrogens/hydrogens_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/hydrogens/hydrogens_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_shared_types_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_shared_types_ext.so.0 mmtbx/geometry/boost_python/shared_types_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so.0'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' g++ -o mmtbx/masks/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/masks/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_f_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_f_model_ext.so.0 mmtbx/f_model/f_model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so.0'->'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so'->'lib/mmtbx_f_model_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/max_lik/max_lik_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_sphere_surface_sampling_ext.so.0 mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/max_lik/max_lik.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_bulk_solvent_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_bulk_solvent_ext.so.0 mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_hydrogens_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_hydrogens_ext.so.0 mmtbx/hydrogens/hydrogens_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so.0'->'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so'->'lib/mmtbx_hydrogens_ext.so.0.0.1' g++ -o mmtbx/bulk_solvent/mosaic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/bulk_solvent/mosaic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so.0'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' g++ -o mmtbx/ncs/cartesian_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/ncs/cartesian_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_indexing_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_indexing_ext.so.0 mmtbx/geometry/boost_python/indexing_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so.0'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' g++ -o mmtbx/ncs/tncs_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/ncs/tncs_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/pair_interaction/interaction_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/pair_interaction/interaction_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_masks_ext.so.0 mmtbx/masks/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so.0'->'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so'->'lib/mmtbx_masks_ext.so.0.0.1' g++ -o mmtbx/probe/boost_python/probe_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/probe/boost_python/probe_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_clash_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_clash_ext.so.0 mmtbx/geometry/boost_python/clash_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so.0'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' g++ -o mmtbx/probe/Scoring.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/probe/Scoring.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_max_lik_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_max_lik_ext.so.0 mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so.0'->'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so'->'lib/mmtbx_max_lik_ext.so.0.0.1' g++ -o mmtbx/probe/DotSpheres.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/probe/DotSpheres.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_cartesian_restraints_ext.so.0 mmtbx/ncs/cartesian_restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_mosaic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_mosaic_ext.so.0 mmtbx/bulk_solvent/mosaic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' g++ -o mmtbx/probe/SpatialQuery.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/probe/SpatialQuery.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so.0'->'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so'->'lib/mmtbx_mosaic_ext.so.0.0.1' g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/reduce/boost_python/reduce_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/reduce/boost_python/reduce_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/ramachandran.h:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i mmtbx::geometry_restraints::target_phi_psi(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const phi_psi_proxy&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/ramachandran.h:314:35: required from here 314 | r = target_phi_psi(general_table, sites_cart, proxy);} | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/ramachandran.h:269:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 269 | for(int i=0; i, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 284 | for(int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/format/parsing.hpp:21, from /usr/include/boost/format.hpp:50, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral.h:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::phi_psi_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:52:75: required from here 52 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 53 | "shared_phi_psi_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_ncs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_ext.so.0 mmtbx/ncs/tncs_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so.0'->'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so'->'lib/mmtbx_ncs_ext.so.0.0.1' g++ -o mmtbx/reduce/InteractionGraph.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/reduce/InteractionGraph.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc probe/lib/libprobelib.a mmtbx/probe/Scoring.o mmtbx/probe/DotSpheres.o mmtbx/probe/SpatialQuery.o ranlib probe/lib/libprobelib.a g++ -o mmtbx/reduce/Optimizers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/reduce/Optimizers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_asa_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_asa_ext.so.0 mmtbx/geometry/boost_python/asa_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_pair_interaction_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_pair_interaction_ext.so.0 mmtbx/pair_interaction/interaction_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so.0'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/rotamer/fit_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/rotamer/fit_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so.0'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' g++ -o mmtbx/rsr/rsr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/rsr/rsr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/reference_coordinate.h:2, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = mmtbx::geometry_restraints::reference_coordinate_proxy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:80:41: required from here 80 | cctbx::geometry_restraints::shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::reference_coordinate_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:61:25: required from here 61 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 62 | "shared_reference_coordinate_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o mmtbx/scaling/scaling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/scaling/scaling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_probe_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_probe_ext.so.0 mmtbx/probe/boost_python/probe_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/probe/lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so.0'->'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so'->'lib/mmtbx_probe_ext.so.0.0.1' g++ -o mmtbx/scaling/twinning_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/scaling/twinning_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ramachandran_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ramachandran_restraints_ext.so.0 mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so.0'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/scaling/relative_scaling_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_rsr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rsr_ext.so.0 mmtbx/rsr/rsr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so.0'->'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so'->'lib/mmtbx_rsr_ext.so.0.0.1' g++ -o mmtbx/scaling/outlier_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/scaling/outlier_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reference_coordinate_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reference_coordinate_ext.so.0 mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_rotamer_fit_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rotamer_fit_ext.so.0 mmtbx/rotamer/fit_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so.0'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' g++ -o mmtbx/secondary_structure/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/secondary_structure/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so.0'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' g++ -o mmtbx/tls/decompose_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/decompose_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/tls_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/tls_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc reduce/lib/libreduce2lib.a mmtbx/reduce/PositionReturn.o mmtbx/reduce/InteractionGraph.o mmtbx/reduce/Optimizers.o ranlib reduce/lib/libreduce2lib.a g++ -o mmtbx/tls/optimise_amplitudes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/optimise_amplitudes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_secondary_structure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_secondary_structure_ext.so.0 mmtbx/secondary_structure/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so.0'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/optimise_amplitudes_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_decompose_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_decompose_ext.so.0 mmtbx/tls/decompose_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so.0'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' g++ -o mmtbx/tls/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/utils/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/utils/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_optimise_amplitudes_ext.so.0 mmtbx/tls/optimise_amplitudes.o mmtbx/tls/optimise_amplitudes_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' g++ -o mmtbx/validation/ramachandran/rama_eval_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/validation/ramachandran/rama_eval_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o omptbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/omptbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reduce_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reduce_ext.so.0 mmtbx/reduce/boost_python/reduce_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Lreduce/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/reduce/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/probe/lib -lreduce2lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_scaling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_scaling_ext.so.0 mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so.0'->'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so'->'lib/mmtbx_scaling_ext.so.0.0.1' g++ -o rstbx/array_family/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/array_family/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/array_family/flex_rstbx_arrays.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/bandpass/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/bandpass/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/src -Irstbx/bandpass/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so.0'->'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so'->'lib/mmtbx_reduce_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/detector_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/detector_model/detector_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_validation_ramachandran_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_validation_ramachandran_ext.so.0 mmtbx/validation/ramachandran/rama_eval_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so.0'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/sensor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/detector_model/sensor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lomptbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' g++ -o lib/mmtbx_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_utils_ext.so.0 mmtbx/utils/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o rstbx/diffraction/fastbragg/fastbragg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so.0'->'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so'->'lib/mmtbx_utils_ext.so.0.0.1' g++ -o rstbx/diffraction/fastbragg/fastbragg.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h: In constructor ‘rstbx::bandpass::active_area_filter::active_area_filter(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h:100:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i < tiles.size()/4; ++i){ | ~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h: In member function ‘bool rstbx::bandpass::active_area_filter::operator()(rstbx::bandpass::vec3, const int&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h:126:39: warning: comparison of integer expressions of different signedness: ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h:126:9: note: in expansion of macro ‘SCITBX_ASSERT’ 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/subpixel_joint_model.h: In member function ‘void rstbx::bandpass::subpixel_joint_model::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/subpixel_joint_model.h:26:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/subpixel_joint_model.h:31:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::prescreen_indices(const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:46:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared rstbx::bandpass::use_case_bp3::selected_partialities() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:93:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:152:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 152 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow_force()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:296:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 296 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:462:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 | for ( int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectangles(rstbx::bandpass::vec3ref)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 477 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectregions(rstbx::bandpass::vec3ref, const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:511:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 511 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::enclosed_pixels() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:543:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 543 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hi_predictions() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:752:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 752 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_lo_predictions() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:763:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 763 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:774:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 774 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions_labelit_format() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:787:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 787 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hkls() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:802:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 802 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::restricted_to_active_areas(scitbx::af::shared, scitbx::af::shared >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:815:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 815 | for (int idx = 0; idx < active_areas.size(); idx+=4){ | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:828:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 828 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ //DEPRECATED | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In function ‘scitbx::af::shared > rstbx::bandpass::ext::use_case_bp2_picture_fast_slow(scitbx::af::shared >, const cctbx::crystal_orientation&, const scitbx::vec3&, const double&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const double&, const scitbx::vec3&, const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:933:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 933 | for (int idx = 0; idx < indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = resolution_limited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:616:87: required from here 616 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = unlimited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:620:78: required from here 620 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o rstbx/indexing_api/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/indexing_api/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/src -Irstbx/indexing_api/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = scitbx::vec3; MillerConversionPolicy = rstbx::diffraction::fastbragg::vec3_double_miller_index_policy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:134:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = cctbx::miller::index<>; MillerConversionPolicy = rstbx::diffraction::fastbragg::integer_miller_index_policy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:138:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 138 | .def("sweep_over_detector_integer_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | rstbx::diffraction::fastbragg::miller_t, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | rstbx::diffraction::fastbragg::integer_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_tls_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_ext.so.0 mmtbx/tls/tls_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/rstbx_bpcx_detector_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bpcx_detector_model_ext.so.0 rstbx/bpcx/detector_model/detector_model_ext.o rstbx/bpcx/detector_model/sensor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so.0'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' Create symlinks for: 'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so.0'->'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so'->'lib/mmtbx_tls_ext.so.0.0.1' g++ -o rstbx/apps/integration_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/apps/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/src -Irstbx/apps/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/integration_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/simage/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/simage/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/src -Irstbx/simage/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/real_to_complex.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/directional_fft.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/dps_core.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/indexing_api.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/indexing_api.h:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘void indexing_api::rayleigh_cpp::estimate_parameters_from_cdf(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:59:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 59 | for (int i=0; i < x_data.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::pdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:80:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::cdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:96:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::d_cdf_d_sigma(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::gradients(scitbx::af::shared, const int&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:129:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:135:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for (int i = 0; i < gradients.size(); ++i){ | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/scope.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:4: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/libdistl.h:81, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/distl.h:14, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/integration_ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/scanbox.h: In member function ‘Distl::interval_list Distl::scanbox_tiling_explicit::generate_defined_x_tiles(const int&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/scanbox.h:268:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | for (int tile = 0 ; tile < tile_count; ++tile){ | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::append_ISmask(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:222:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 222 | for (int i=0; i < mask.size(); i+=2){ | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::positional_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:273:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 273 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for (int p=0; p >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:310:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 310 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 320 | for (int p=0; p > rstbx::integration::simple_integration::safe_background(const scitbx::af::flex_int&, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:366:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 366 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 378 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 395 | for (int i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 495 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 550 | for (int i=0; i >, scitbx::af::shared >, scitbx::af::shared >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:575:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 575 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 638 | for (int k=0; k >&, const scitbx::af::const_ref&, const scitbx::mat3&, double, double, int, double, scitbx::vec2, scitbx::vec2, unsigned int, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/image_simple.hpp:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 144 | for(int i=0;i<=point_spread;i++) { | ~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/image_simple.hpp:148:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 148 | for(int j=0;j<=point_spread;j++) { | ~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/image_simple.hpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/ext.cpp: In function ‘std::string rstbx::simage::ext::combine_rgb_images(const boost::python::list&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/ext.cpp:58:42: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | TBXX_ASSERT(bp::len(rgb_images[j]) == img_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ g++ -o lib/rstbx_bandpass_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bandpass_ext.so.0 rstbx/bandpass/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lann-cctbx -lann_adaptor -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so.0'->'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so'->'lib/rstbx_bandpass_ext.so.0.0.1' g++ -o rstbx/simulation/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/simulation/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/src -Irstbx/simulation/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_diffraction_fastbragg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_diffraction_fastbragg_ext.so.0 rstbx/diffraction/fastbragg/fastbragg_ext.o rstbx/diffraction/fastbragg/fastbragg.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so.0'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' g++ -o rstbx/symmetry/constraints/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/symmetry/constraints/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/symmetry/constraints/src -Irstbx/symmetry/constraints/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/symmetry/constraints/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/symmetry/constraints/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_indexing_api_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_indexing_api_ext.so.0 rstbx/indexing_api/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so.0'->'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so'->'lib/rstbx_indexing_api_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_simage_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simage_ext.so.0 rstbx/simage/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so.0'->'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so'->'lib/rstbx_simage_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_grid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/ext.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::shared rstbx::xfel1::select_proximal_indices(const int&, const double&, const double&, const cctbx::crystal_orientation&, const double&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int x = 0; x < indices_all.size(); ++x){ | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::versa > rstbx::xfel1::raw_diffraction(scitbx::af::shared, scitbx::af::versa >, const size_t&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 178 | for (int mcount=0; mcount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 230 | for (int isel = 0; isel < selected.size(); ++isel){ | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h:231:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int imos = 0; imos < mosaic_perturbations.size(); ++imos){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp: In member function ‘const char* scitbx::af::boost_python::cost_of_m_handle_in_af_shared::operator()(unsigned int, unsigned int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:367:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 367 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:375:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 375 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:383:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 383 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/selections.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:2: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/selections.h: In instantiation of ‘scitbx::af::shared scitbx::af::reindexing_array(std::size_t, const const_ref&) [with IntType = int; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:544:7: required from here 544 | reindexing_array, | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/selections.h:156:35: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | SCITBX_ASSERT(iselection[i] < selectee_size); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/selections.h:156:7: note: in expansion of macro ‘SCITBX_ASSERT’ 156 | SCITBX_ASSERT(iselection[i] < selectee_size); | ^~~~~~~~~~~~~ g++ -o lib/rstbx_integration_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_integration_ext.so.0 rstbx/apps/integration_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lann-cctbx -lann_adaptor -lspotfinder -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so.0'->'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so'->'lib/rstbx_integration_ext.so.0.0.1' g++ -o lib/mmtbx_tls_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_utils_ext.so.0 mmtbx/tls/utils.o mmtbx/tls/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/c_grid_flex_conversions.h:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:84:46: required from here 84 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:85:45: required from here 85 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:86:36: required from here 86 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:87:36: required from here 87 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:88:36: required from here 88 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:89:36: required from here 89 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:90:37: required from here 90 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:91:39: required from here 91 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:92:39: required from here 92 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:93:39: required from here 93 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:94:39: required from here 94 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:95:39: required from here 95 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:96:53: required from here 96 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:97:53: required from here 97 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:98:53: required from here 98 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:100:50: required from here 100 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:101:51: required from here 101 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:102:55: required from here 102 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:103:55: required from here 103 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:104:55: required from here 104 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:105:58: required from here 105 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:106:53: required from here 106 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:107:53: required from here 107 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:108:53: required from here 108 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:110:54: required from here 110 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:112:46: required from here 112 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:113:46: required from here 113 | tuple_mapping_fixed_size >(); // scitbx/math/golay.h | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:115:49: required from here 115 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:117:50: required from here 117 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:118:50: required from here 118 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:119:50: required from here 119 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:120:50: required from here 120 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:122:53: required from here 122 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:123:53: required from here 123 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:124:53: required from here 124 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:127:51: required from here 127 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:128:52: required from here 128 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:129:42: required from here 129 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:130:42: required from here 130 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:131:45: required from here 131 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:132:63: required from here 132 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:133:45: required from here 133 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:134:49: required from here 134 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:135:51: required from here 135 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:136:52: required from here 136 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:137:42: required from here 137 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:138:42: required from here 138 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:139:45: required from here 139 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:140:45: required from here 140 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:141:49: required from here 141 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:143:60: required from here 143 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:144:60: required from here 144 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:146:54: required from here 146 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:147:54: required from here 147 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:148:54: required from here 148 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:149:54: required from here 149 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:150:54: required from here 150 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:151:54: required from here 151 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:153:64: required from here 153 | tuple_mapping_fixed_capacity(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 3>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:154:56: required from here 154 | tuple_mapping_fixed_capacity, 3> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 2>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:155:56: required from here 155 | tuple_mapping_fixed_capacity, 2> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 6>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:156:59: required from here 156 | tuple_mapping_fixed_capacity, 6> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 7>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:157:59: required from here 157 | tuple_mapping_fixed_capacity, 7> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:158:59: required from here 158 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:159:59: required from here 159 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ Create symlinks for: 'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so.0'->'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so'->'lib/mmtbx_tls_utils_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = cctbx::crystal_orientation]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const cctbx::crystal_orientation&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = cctbx::crystal_orientation]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o lib/rstbx_symmetry_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_symmetry_constraints_ext.so.0 rstbx/symmetry/constraints/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so.0'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:429:8: required from here 429 | def("first_index", f_w::first_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:430:8: required from here 430 | def("last_index", f_w::last_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ g++ -o lib/rstbx_simulation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simulation_ext.so.0 rstbx/simulation/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so.0'->'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so'->'lib/rstbx_simulation_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/rstbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_ext.so.0 rstbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so'->'lib/rstbx_ext.so.0.0.1' /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, small, const const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:119:74: required from here 119 | double (*matrix_norm_1)(const_ref const &) = matrix::norm_1; | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h:16:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:177:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:178:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | .def("matrix_norm_frobenius", matrix::norm_frobenius) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h:46:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int k=0; k < a_ij.size(); ++k) norm_accu(a_ij[k]); | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘scitbx::af::flex::type* scitbx::af::{anonymous}::from_list_or_tuple_of_lists_or_tuples(PyObject*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:154:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 154 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:206:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 206 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘std::string scitbx::af::{anonymous}::mathematica_form(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:452:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 452 | for (int i=1; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 454 | if (i != indices.size() - 1) o << ","; | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:365:26: required from here 365 | return matrix::norm_1(self); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | for (int i=0; i scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:536:8: required from here 536 | def( | ~~~^ 537 | "double_from_byte_str", | ~~~~~~~~~~~~~~~~~~~~~~~ 538 | shared_from_byte_str, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | (arg("byte_str"))); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o lib/rstbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_array_family_flex_ext.so.0 rstbx/array_family/ext.o rstbx/array_family/flex_rstbx_arrays.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so.0'->'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so'->'lib/rstbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:885:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 885 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:886:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 886 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sort.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_weighted_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mean_and_variance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_linear_interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:2: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/basic_statistics.h: In instantiation of ‘scitbx::math::median_statistics scitbx::math::median_functor::dispersion(const scitbx::af::ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:31:26: required from ‘static scitbx::math::median_statistics scitbx::af::boost_python::median_functor_wrapper::dispersion(wt&, const scitbx::af::const_ref&) [with FloatType = double; wt = scitbx::math::median_functor]’ 31 | return O.dispersion(af::make_ref(buffer)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:40:13: required from ‘static void scitbx::af::boost_python::median_functor_wrapper::wrap(const char*) [with FloatType = double]’ 36 | class_(name, no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | .def(init<>()) | ~~~~~~~~~~~~~~ 38 | .def(init(arg("seed"))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | .def("__call__", call, arg("data")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | .def("dispersion", dispersion, arg("data")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:63:41: required from here 63 | median_functor_wrapper::wrap("median_functor"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/basic_statistics.h:210:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (int i=0; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp: In function ‘scitbx::af::flex >::type* scitbx::af::{anonymous}::array_indices_as_double_from_array_focus_dimensions(const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:128:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 128 | for(std::size_t i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::af::tiny; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::sym_mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::sym_mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::sym_mat3*; _Size = long unsigned int; _Tp = scitbx::sym_mat3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::mat3*; _Size = long unsigned int; _Tp = scitbx::mat3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec2; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec2*; _Size = long unsigned int; _Tp = scitbx::vec2]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/loops.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/show_sizes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:40:53: required from here 40 | shared_wrapper, rir>::wrap("stl_vector_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:41:51: required from here 41 | shared_wrapper, rir>::wrap("stl_vector_double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:42:50: required from here 42 | shared_wrapper, rir>::wrap("stl_set_unsigned") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:48:37: required from here 48 | shared_wrapper >::wrap("mat3_int"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:49:40: required from here 49 | shared_wrapper >::wrap("tiny_int_3"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:50:40: required from here 50 | shared_wrapper >::wrap("tiny_int_4"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:51:40: required from here 51 | shared_wrapper >::wrap("tiny_int_2"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors_ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp: In instantiation of ‘std::map > scitbx::cubicle_neighbors::neighbors_of(const scitbx::af::const_ref >&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors_ext.cpp:23:36: required from here 23 | .def("neighbors_of", &w_t::neighbors_of, ( | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:61:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 61 | if (i_cub[0] < 0 || i_cub[0] >= n_cubicles[0]) continue; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:63:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 63 | if (i_cub[1] < 0 || i_cub[1] >= n_cubicles[1]) continue; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:65:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 65 | if (i_cub[2] < 0 || i_cub[2] >= n_cubicles[2]) continue; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = scitbx::vec3; CubicleContentType = std::vector::cubicle_site, std::allocator::cubicle_site> >; FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:43:30: required from ‘scitbx::cubicle_neighbors::cubicle_neighbors(const scitbx::af::const_ref >&, const FloatType&, const FloatType&) [with FloatType = double]’ 43 | cubicles_.i_cubicle(main_sites_cart[i_seq])); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; Value = scitbx::cubicle_neighbors<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<3>::apply::execute(PyObject*, t0, t1, t2) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector3 >&, const double&, const double&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const double&; t2 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector3 >&, const double&, const double&>; Arity = boost::mpl::size >&, const double&, const double&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const double&, const double&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const double&, const double&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const double&, const double&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const double&, const double&>; W = scitbx::cubicle_neighbors<>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors_ext.cpp:16:13: required from here 15 | class_("cubicle_neighbors", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 | .def(init< | ~~~~^~~~~~ 17 | af::const_ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 18 | double const&, | ~~~~~~~~~~~~~~ 19 | double const&>(( | ~~~~~~~~~~~~~~~~ 20 | arg("main_sites_cart"), | ~~~~~~~~~~~~~~~~~~~~~~~ 21 | arg("cubicle_edge"), | ~~~~~~~~~~~~~~~~~~~~ 22 | arg("epsilon")=1.e-6))) | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/glmtbx/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/graphics_utils/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/gridding.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/iso_surface/iso_surface_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/lbfgs/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgs/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable scitbx/lbfgs/lbfgs_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/lbfgs_fem.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/linalg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j::minimizer(const int&, const int&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, bool, const FloatType&, const FloatType&, const int&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value >; A3 = boost::python::objects::reference_to_value >; A4 = boost::python::objects::reference_to_value >; A5 = bool; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; Value = scitbx::lbfgsb::minimizer; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<9>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; PyObject = _object; t0 = const int&; t1 = const int&; t2 = scitbx::af::shared; t3 = scitbx::af::shared; t4 = scitbx::af::shared; t5 = bool; t6 = const double&; t7 = const double&; t8 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; Arity = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, not_specified, not_specified, not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = scitbx::lbfgsb::minimizer; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:20:13: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 19 | class_("minimizer", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 20 | .def(init, | ~~~~~~~~~~~~~~~~~~~~~~ 23 | af::shared, | ~~~~~~~~~~~~~~~~~~~~~~ 24 | af::shared, | ~~~~~~~~~~~~~~~~ 25 | bool, | ~~~~~ 26 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 27 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 28 | int const&>()) | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:118:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 118 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:118:9: note: in expansion of macro ‘SCITBX_ASSERT’ 118 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:119:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 119 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:119:9: note: in expansion of macro ‘SCITBX_ASSERT’ 119 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:120:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 120 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:120:9: note: in expansion of macro ‘SCITBX_ASSERT’ 120 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/eigensystem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lstbx/boost_python/lstbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lstbx/boost_python/normal_equations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp: In function ‘int scitbx::lapack::boost_python::dsyev_wrapper(const std::string&, const std::string&, const scitbx::af::ref >&, const scitbx::af::ref&, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 246 | SCITBX_ASSERT(w.size() == n); | ~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:5: note: in expansion of macro ‘SCITBX_ASSERT’ 246 | SCITBX_ASSERT(w.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/basic_statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/golay.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/minimum_covering_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/principal_axes_of_inertia.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/row_echelon.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/chebyshev.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/icosahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/slatec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/line_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/line_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/r3_rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/r3_rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/resample.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/resample.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o scitbx/math/boost_python/quadrature.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/quadrature.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/unimodular_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/unimodular_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/halton.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/halton.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/least_squares_plane.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/least_squares_plane.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/continued_fraction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/continued_fraction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/numeric_limits.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/numeric_limits.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/exp_functions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/exp_functions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/zernike.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/2d_zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/weighted_covariance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/weighted_covariance.cpp g++ -o scitbx/math/boost_python/rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/tetrahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/angle_derivative.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/minpack/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/r3_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/r3_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/random/boost_python/random_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/raw.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/levenberg_marquardt.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/ext.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/levenberg_marquardt.h: In member function ‘void scitbx::minpack::levenberg_marquardt::process_fvec(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/levenberg_marquardt.h:80:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | SCITBX_ASSERT(fvec.size() == m); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/levenberg_marquardt.h:80:9: note: in expansion of macro ‘SCITBX_ASSERT’ 80 | SCITBX_ASSERT(fvec.size() == m); | ^~~~~~~~~~~~~ g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/random/boost_python/basic_distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/rigid_body/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/vector.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/approx_equal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/lu_factorization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rotr3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/spatial_lib.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/featherstone.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:14: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 4]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:361:21: required from ‘scitbx::rotr3 scitbx::rigid_body::joint_lib::six_dof_aja_simplified(const scitbx::vec3&, const scitbx::af::const_ref&) [with FloatType = double]’ 361 | af::tiny qe(&q[0], &q[4]); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:24:49: required from here 24 | result = joint_lib::six_dof_aja_simplified(center_of_mass, q); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_matrix.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/spatial_lib.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/featherstone.h:683:31: required from ‘scitbx::af::shared > scitbx::rigid_body::featherstone::system_model::inverse_dynamics(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&) [with FloatType = double]’ 683 | tau_array[ib] = af::small(f[ib].begin(), f[ib].end()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/featherstone.h:705:21: required from ‘scitbx::af::shared scitbx::rigid_body::featherstone::system_model::inverse_dynamics_packed(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with FloatType = double]’ 705 | tau_array = inverse_dynamics( | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:120:46: required from here 120 | .def("inverse_dynamics_packed", &wt::inverse_dynamics_packed, ( | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h: In instantiation of ‘scitbx::af::shared > > scitbx::rigid_body::tardy::construct_bodies(const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const boost::python::api::object&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h:203:54: required from ‘scitbx::rigid_body::tardy::model::model(const boost::python::api::object&, const scitbx::af::shared >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, const ft&) [with FloatType = double; ft = double]’ 203 | featherstone::system_model(construct_bodies( | ~~~~~~~~~~~~~~~~^ 204 | sites_.const_ref(), | ~~~~~~~~~~~~~~~~~~~ 205 | masses_.const_ref(), | ~~~~~~~~~~~~~~~~~~~~ 206 | tardy_tree_.attr("cluster_manager"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 | near_singular_hinges_angular_tolerance_deg_)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = scitbx::rigid_body::tardy::model<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; PyObject = _object; t0 = const boost::python::api::object&; t1 = const scitbx::af::shared >&; t2 = const scitbx::af::shared&; t3 = const boost::python::api::object&; t4 = const boost::python::api::object&; t5 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; Arity = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:344:31: required from ‘static void boost::python::detail::define_class_init_helper::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, boost::python::detail::keyword_range) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; int NDefaults = 1; boost::python::detail::keyword_range = std::pair]’ 344 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedT = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional > >; classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedVisitor = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >; W = scitbx::rigid_body::tardy::model<>; X1 = boost::python::bases >; X2 = boost::noncopyable_::noncopyable; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:151:13: required from here 146 | class_ >, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | boost::noncopyable | ~~~~~~~~~~~~~~~~~~ 149 | >("tardy_model", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .enable_pickling() | ~~~~~~~~~~~~~~~~~~ 151 | .def(init< | ~~~~^~~~~~ 152 | object const&, | ~~~~~~~~~~~~~~ 153 | af::shared > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | af::shared const&, | ~~~~~~~~~~~~~~~~~~~~~~ 155 | object const&, | ~~~~~~~~~~~~~~ 156 | object const&, | ~~~~~~~~~~~~~~ 157 | optional >(( | ~~~~~~~~~~~~~~~~~~~~~~~ 158 | arg("labels"), | ~~~~~~~~~~~~~~ 159 | arg("sites"), | ~~~~~~~~~~~~~ 160 | arg("masses"), | ~~~~~~~~~~~~~~ 161 | arg("tardy_tree"), | ~~~~~~~~~~~~~~~~~~ 162 | arg("potential_obj"), | ~~~~~~~~~~~~~~~~~~~~~ 163 | arg("near_singular_hinges_angular_tolerance_deg")=5))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h:163:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 163 | SCITBX_ASSERT(body->parent < nc); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h:163:9: note: in expansion of macro ‘SCITBX_ASSERT’ 163 | SCITBX_ASSERT(body->parent < nc); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 1]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:648:13: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::revolute::new_q(const scitbx::af::const_ref&) const [with FloatType = double]’ 648 | af::tiny(q.begin(), q.end()))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:643:5: required from here 643 | new_q( | ^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 12]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:45:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::rbda_eq_4_13(const scitbx::af::tiny&) [with FloatType = double]’ 45 | return af::tiny(coeffs, coeffs+4*3) * ft(0.5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:279:21: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::six_dof::time_step_position(const scitbx::af::const_ref&, const ft&) const [with FloatType = double; ft = double]’ 279 | rbda_eq_4_13(unit_quaternion), w_body_frame); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:271:5: required from here 271 | time_step_position( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 16]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:79:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::d_unit_quaternion_d_qe_matrix(const scitbx::af::tiny&) [with FloatType = double]’ 79 | return af::tiny(coeffs, coeffs+4*4) / n3; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:317:58: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 317 | af::tiny d = d_unit_quaternion_d_qe_matrix(qe); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:324:24: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 324 | af::small result(cn.begin(), cn.end()); | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/sparse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o scitbx/stl/set_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_ext.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o scitbx/stl/vector_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = unsigned int; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_ext.cpp:9:32: required from here 9 | set_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_ext.cpp:10:35: required from here 10 | set_wrapper::wrap("stl_string"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_matrix.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/array_as_list.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:3: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/suffixtree/boost_python/object_extensions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp:2: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp:10:35: required from here 10 | vector_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp:11:33: required from here 11 | vector_wrapper::wrap("double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp:14:50: required from here 14 | vector_wrapper, rir>::wrap("set_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' g++ -o scitbx/wigner/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/wigner/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/ab_initio/ab_initio_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o smtbx/array_family/af_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/array_family/af_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/constraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/boost_python/least_squares_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/boost_python/weighting_schemes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/boost_python/least_squares.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/restraints/boost_python/origin_fixing.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/restraints/boost_python/restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/structure_factors/direct/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_distl_spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/flex_distl_spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/boost_python/distltbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/distltbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o spotfinder/diffraction/geometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/diffraction/geometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/dxtbx_toolbox/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/dxtbx_toolbox/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/src -Ispotfinder/dxtbx_toolbox/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scaled_adp.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python314 -lm g++ -o spotfinder/core_toolbox/boost_python/hough_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/hough_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o mmtbx/masks/tst_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/masks/tst_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/list.hpp:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:156:78: required from here 156 | scitbx::boost_python::container_conversions::variable_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:160:72: required from here 160 | scitbx::boost_python::container_conversions::linked_list_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:164:71: required from here 164 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:168:71: required from here 168 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:172:75: required from here 172 | scitbx::boost_python::container_conversions::fixed_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/spotfinder_hough_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_hough_ext.so.0 spotfinder/core_toolbox/boost_python/hough_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so.0'->'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so'->'lib/spotfinder_hough_ext.so.0.0.1' g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_dxtbx_ext.so.0 spotfinder/dxtbx_toolbox/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -ldxtbxspotfinder -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so.0'->'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so'->'lib/spotfinder_dxtbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/masks/tst_mask -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread mmtbx/masks/tst_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:15: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<1>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:127:11: required from here 127 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<4>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:145:11: required from here 145 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<2>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:172:11: required from here 172 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<3>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:202:11: required from here 202 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:248:11: required from here 248 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:280:11: required from here 280 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:326:11: required from here 326 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:371:11: required from here 371 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/scoped_array.hpp:14, from /usr/include/boost/scoped_array.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/tiny_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small_plain]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::small]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:621:46: required from here 621 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared_plain]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:624:48: required from here 624 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:629:42: required from here 629 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_1() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:635:64: required from here 634 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 | af::versa_plain > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:637:58: required from here 636 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 | af::versa > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/small_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = int; long unsigned int N = 128]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:41:17: required from ‘static void {anonymous}::array_exercise::run_1() [with ArrayType = scitbx::af::small_plain]’ 41 | ArrayType a5(a4.begin(), a4.begin()); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:28:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 28 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_accessors.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_4.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_5.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_mat3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp: In function ‘int main()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 52 | for(int i=0; i'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so'->'lib/spotfinder_distltbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_vec3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_vec3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_optional_copy -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/error/tst_error.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/error -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error/tst_error.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so.0'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/timing/fftpack_timer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_ref_matrix_facet -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_ref_matrix_facet.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/fftpack/timing/test0.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/timing/test0.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/error/tst_error -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/error/tst_error.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable scitbx/lbfgs/sdrive_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgs/tst_lbfgs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/timing/fftpack_timer.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/sdrive_fem.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_vec3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/complex_to_complex_3d.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/timing/test0.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ g++ -o scitbx/array_family/tst_sym_mat3 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_sym_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver1.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgs/tst_lbfgs -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgs/tst_lbfgs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver2.cpp:102:19: required from here 102 | write_ref1(" ", x); | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver2.cpp:70:11: required from here 70 | setulb( | ~~~~~~^ 71 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm g++ -o scitbx/math/tests/tst.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/math/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/tests/tst.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver3.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver3.cpp:82:19: required from here 82 | write_ref1(" ", wa.get1(j+1,n)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver3.cpp:72:11: required from here 72 | setulb( | ~~~~~~^ 73 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/fftpack/timing/fftpack_timer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/math/tests/tst -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/math/tests/tst.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests/tst_cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests/tst_givens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests/tst_householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests/tst_svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/fftpack/timing/test0.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/serialization -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/serialization /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/serialization/tst_base_256.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/sparse/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/tests/tst_sparse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_givens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/serialization/tst_base_256.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_cholesky.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/tests/tst_special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_householder.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_svd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o lib/spotfinder_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_array_family_flex_ext.so.0 spotfinder/array_family/flex_ext.o spotfinder/array_family/flex_distl_spot.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so.0'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/sparse/tests/tst_sparse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_special_position.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_4.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm scons: done building targets. usr+sys time: 55.91 seconds wall clock time: 21 minutes 11.10 seconds (1271.10 seconds total) I: pybuild base:385: cd '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build'_ && ./bin/libtbx.scons -j 8 scons: Reading SConscript files ... libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 libtbx.scons: OpenMP is disabled. BOOST_PYTHON_LIB_VERSION: boost_python313 BOOST_NUMPY_LIB_VERSION: boost_numpy313 BOOST_VERSION: 109000 Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/exe_dev/cbflib.tst_memory' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o annlib_adaptbx/ann/ann_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -Iannlib_adaptbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/src -Iannlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/ann/ann_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o annlib_adaptbx/ann/boost_python/annlib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/usr/include/python3.13 -Iannlib_adaptbx/ann/boost_python/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/ann/boost_python/src -Iannlib_adaptbx/ann/boost_python/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/ann/boost_python/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/ann/boost_python/annlib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/blobs_cmd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/blobs_cmd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/asymmetric_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/skeletons.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/skeletons.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/dijkstra.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/dijkstra.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_reader.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/xplor/map_reader.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_writer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/xplor/map_writer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/cut.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/basic.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/basic.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering/it1992.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering/wk1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering/n_gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/fp_fdp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/fp_fdp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_01_12.cpp g++ -o cctbx/eltbx/henke_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_73_84.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_73_84.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_85_92.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/henke_tables_85_92.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/icsd_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/icsd_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/covalent_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/covalent_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/neutron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/neutron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_73_82.cpp g++ -o cctbx/eltbx/tiny_pse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/tiny_pse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/wavelengths.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/wavelengths.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/electron_scattering/peng1996.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/attenuation_coefficient.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/attenuation_coefficient.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/bricks.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/bricks.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/change_of_basis_op.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/group_codes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/group_codes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/hall_in.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/hall_in.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_tr.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/lattice_tr.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/miller.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/miller.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reciprocal_space_ref_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/row_echelon_solve.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/row_echelon_solve.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reference_settings/normalizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/reference_settings/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/uctbx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/uctbx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/spoil_optimization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/spoil_optimization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/crystal_orientation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/crystal_orientation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o omptbx/stubs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/omptbx/stubs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread Create symlinks for: 'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm Create symlinks for: 'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/metric_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/utility_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/hybrid_times_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/meta_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/optional_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/rational_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/std_pair_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/tests/boost_thread_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/tests/python_streambuf_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/tests/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/boost_adaptbx/tuple_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread boost_adaptbx/tests/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSWIG_PYTHON_STRICT_BYTE_CHAR -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/buffer_based_service.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/cbf_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/mar_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCBF_NO_REGEX -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx/detectors/tst_memory.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ccp4io_adaptbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io_adaptbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io_adaptbx/fortran_call_stubs.c gcc -o ccp4io_adaptbx/printf_wrappers.o -c -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ccp4io_adaptbx/printf_wrappers.c g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/adp_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/adp_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/adp_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/aniso_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lm g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/isotropic_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o cctbx/maptbx/skeletons.o cctbx/maptbx/dijkstra.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/rigid_bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o bin/cctbx_blobs -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/maptbx/blobs_cmd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o cctbx/adp_restraints/rigu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adp_restraints/rigu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adptbx/boost_python/adptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/anharmonic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adptbx/boost_python/anharmonic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/adptbx/boost_python/hirshfeld.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/array_family/boost_python/flex_miller_index.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/array_family/boost_python/flex_xray_scatterer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/emma_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/boost_python/emma_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/french_wilson_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/boost_python/french_wilson_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/orientation_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/boost_python/orientation_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/statistics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/boost_python/statistics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/covariance/boost_python/covariance_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/asu_clusters_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/asu_clusters_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/close_packing_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/close_packing_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/coordination_sequences_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/crystal_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/crystal_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/incremental_pairs_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/neighbors_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/neighbors_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/pair_tables_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/pair_tables_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/site_cluster_analysis_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/symmetry_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/symmetry_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/dmtbx/boost_python/dmtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/dmtbx/boost_python/triplet_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/chemical_elements_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/covalent_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/fp_fdp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/henke_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/icsd_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/neutron_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/sasaki_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/tiny_pse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/wavelengths_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/boost_python/xray_scattering_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/convert_ccp4_symop_lib.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/find_distances.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/find_distances.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/getting_started.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/getting_started.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/examples/sys_abs_equiv_space_groups.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry/boost_python/geometry_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::angle_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:75:65: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_angle_proxy") | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_misc.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:14: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::map; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:129:23: required from here 129 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 130 | "bond_params_table") | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:232:25: required from here 232 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 233 | "shared_bond_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_bpl.cpp:340:25: required from here 340 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 341 | "shared_bond_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:12: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity.h:84:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for(int i=0;i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity.h:108:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | for(int i=0;i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_similarity_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:55:44: required from here 54 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | bond_similarity_proxy, rir>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | "shared_bond_similarity_proxy"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny, 2>; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:79:54: required from here 78 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | af::tiny, 2>, rbv>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 80 | "sites_array"); | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_sorted.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h: In instantiation of ‘int cctbx::crystal::direct_space_asu::asu_mappings::find_i_sym(unsigned int, const cctbx::sgtbx::rt_mx&) const [with FloatType = double; IntShiftType = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/pair_tables.h:643:46: required from ‘bool cctbx::crystal::pair_asu_table::process_pair(unsigned int, unsigned int, const cctbx::sgtbx::rt_mx&) [with FloatType = double; IntShiftType = int]’ 643 | int j_sym = asu_mappings_->find_i_sym(j_seq, rt_mx_j); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/pair_tables.h:543:35: required from ‘cctbx::crystal::pair_asu_table& cctbx::crystal::pair_asu_table::add_pair(const scitbx::af::tiny&) [with FloatType = double; IntShiftType = int]’ 543 | bool is_new = process_pair(i_seqs[0], i_seqs[1], rt_mx_ji); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond_sorted.h:16:30: required from here 16 | pair_asu_table.add_pair(bond_simple_proxies[i].i_seqs); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:859:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 859 | for(int i_sym=0; i_sym, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 869 | for(int i_sym=0; i_sym::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/geometry_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::chirality_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:75:60: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_chirality_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/motif_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/motif_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/angle_bpl.cpp:2: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:12: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = dihedral_proxy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:110:17: required from here 110 | shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::dihedral_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:84:65: required from here 84 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 85 | "shared_dihedral_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:92:25: required from here 92 | shared_w_t::wrap("shared_nonbonded_simple_proxy") | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:125:25: required from here 125 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 126 | "shared_nonbonded_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/neighbors_fast.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/pair_tables.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = cctbx::cartesian; CubicleContentType = std::vector; FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/neighbors_fast.h:77:34: required from ‘cctbx::crystal::neighbors::fast_pair_generator::fast_pair_generator(const boost::shared_ptr >&, const FloatType&, bool, const FloatType&, const FloatType&) [with FloatType = double; IntShiftType = int]’ 77 | cubicles_.i_cubicle(mappings[mi.i_seq][mi.i_sym].mapped_site())); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:80:27: required from here 80 | min_cubicle_edge); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::parallelity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp:82:60: required from here 82 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 83 | "shared_parallelity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/planarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::planarity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:62:23: required from here 62 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 63 | "shared_planarity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/asymmetric_map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/bcr/bcr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/bcr/bcr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/coordinate_transformers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/grid_tags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/gridding.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/maptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/misc.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/peak_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/pymol_interface.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/maptbx/boost_python/structure_factors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/masks/boost_python/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/math/time_trigonometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/math/time_trigonometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_timer -lm g++ -o cctbx/merging/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/merging/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/amplitude_normalisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/change_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/change_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/expand_to_p1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/f_calc_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/f_calc_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/lookup_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/lookup_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/merge_equivalents.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/miller_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/miller_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_integrator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/phase_integrator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_transfer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/phase_transfer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/slices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/slices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/boost_python/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/multipolar/aspherical_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/multipolar/aspherical_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/brick.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/brick.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/change_of_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/phase_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/search_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/sgtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/tensors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/boost_python/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/translation_search/boost_python/fast_nv1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/translation_search/boost_python/fast_terms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lm g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/translation_search/boost_python/symmetry_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/translation_search/boost_python/translation_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/niggli_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/boost_python/niggli_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/boost_python/uctbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_SINGLEFILE_NCDIST -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx/determine_unit_cell/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/conversions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/conversions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/curvatures_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/extinction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/extinction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/f_model_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/fast_gradients.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/fast_gradients.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/curvatures_simple.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/curvatures_simple.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/gradient_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/gradient_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/fast_gradients.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/fast_gradients.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/f_model.h:4: /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/gradients_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/gradients_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/f_model.h: In instantiation of ‘cctbx::xray::f_model_core_data::f_model_core_data cctbx::xray::f_model_core_data::f_model_core_data::select(const scitbx::af::const_ref&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/f_model_bpl.cpp:174:32: required from here 174 | .def("select", &w_t::select) | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/f_model.h:732:38: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | CCTBX_ASSERT( iselection[ii]::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/parameter_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/parameter_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sampled_model_density.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:14, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:4: /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/minimization.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/minimization.cpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:257:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for (long int ii=0;ii::r_abs() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:69:31: required from here 69 | .def("r_abs", &w_t::r_abs) | ^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:271:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for (long int ii=0;ii cctbx::xray::grouped_data::merger::combine_obs(long int) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:258:24: required from ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’ 258 | tmp_result = combine_obs( ii ); | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:213:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 213 | for (int ii=1;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int ii=1;ii::unmerged_data(scitbx::af::const_ref >, scitbx::af::const_ref >, const cctbx::sgtbx::space_group&, const bool&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::unmerged_data; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<4>::apply::execute(PyObject*, t0, t1, t2, t3) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; W = cctbx::xray::grouped_data::unmerged_data; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:27:15: required from here 26 | class_("unmerged_data", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | bool const& | ~~~~~~~~~~~ 31 | > | ~ 32 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 33 | arg("asu_hkl"), | ~~~~~~~~~~~~~~~ 34 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 35 | arg("anomalous_flag") ))) | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:54:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 54 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for (int ii=0; ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:67:11: note: in expansion of macro ‘CCTBX_ASSERT’ 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::merger::merger(scitbx::af::const_ref >, scitbx::af::const_ref, scitbx::af::const_ref, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::merger; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref&; t2 = const scitbx::af::const_ref&; t3 = const cctbx::sgtbx::space_group&; t4 = const bool&; t5 = const cctbx::uctbx::unit_cell&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; W = cctbx::xray::grouped_data::merger; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/grouped_data.cpp:54:15: required from here 53 | class_("merger", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 | cctbx::uctbx::unit_cell const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | > | ~ 61 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 62 | arg("i_obs"), | ~~~~~~~~~~~~~ 63 | arg("s_obs"), | ~~~~~~~~~~~~~ 64 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 65 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 66 | arg("unit_cell") | ~~~~~~~~~~~~~~~~ 67 | ))) | ~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/grouped_data.h:151:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | for (int ii=0;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 167 | for (int ii=0; ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/parameter_map.h: In instantiation of ‘void cctbx::xray::parameter_map::init_scatterer_part(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/parameter_map.h:54:7: required from ‘cctbx::xray::parameter_map::parameter_map(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’ 54 | init_scatterer_part(scatterers); | ^~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0) [with A0 = boost::python::objects::reference_to_value, scitbx::af::trivial_accessor>&>; Value = cctbx::xray::parameter_map >; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<1>::apply::execute(PyObject*, t0) [with Holder = boost::python::objects::value_holder > >; ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; PyObject = _object; t0 = const scitbx::af::const_ref, scitbx::af::trivial_accessor>&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; Arity = boost::mpl::size, scitbx::af::trivial_accessor>&> >; Holder = boost::python::objects::value_holder > >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = cctbx::xray::parameter_map >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:46:11: required from ‘static void cctbx::xray::boost_python::parameter_map_wrapper::wrap(const char*) [with XRayScattererType = cctbx::xray::scatterer<>]’ 45 | class_("parameter_map", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 | .def(init const &>(( | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 | arg("scatterers")))) | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/parameter_map.cpp:60:50: required from here 60 | parameter_map_wrapper >::wrap("parameter_map"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/parameter_map.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for(int i_sc=0; i_sc < scatterers.size(); ++i_sc) { | ~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scatterer_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sampling_base.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::henke::table]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scatterer.cpp:349:54: required from here 349 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::sasaki::table]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scatterer.cpp:353:55: required from here 353 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sigmaa.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sigmaa.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/structure_factors_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::xray::scatterer_flags; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:142:44: required from here 140 | class_ wrapper = scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | scatterer_flags, | ~~~~~~~~~~~~~~~~ 142 | return_internal_reference<> >::wrap("shared_scatterer_flags"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const cctbx::xray::scattering_type_registry::unique_counts_t&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/sigmaa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/sigmaa.cpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/structure_factors_simple.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/twin_components.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_components.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_components.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_components.cpp:91:77: required from here 91 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_components.cpp:92:78: required from here 92 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/xray_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/observations/boost_python/observations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/observations/boost_python/observations_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:14, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/string:51, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/istream:42, from /usr/include/c++/15/sstream:42, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:4: /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -o chiltbx/handle_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/chiltbx/handle_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::shared cctbx::xray::twin_targets::twin_completion::get_free_model_selection(scitbx::af::const_ref >, const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:42:50: required from here 42 | .def("get_free_model_selection", &w_t::get_free_model_selection) | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:128:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | CCTBX_ASSERT( index < flags.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:128:11: note: in expansion of macro ‘CCTBX_ASSERT’ 128 | CCTBX_ASSERT( index < flags.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:182:39: required from here 182 | .def("r_intensity_abs", &w_t::r_intensity_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:559:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:559:6: note: in expansion of macro ‘CCTBX_ASSERT’ 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:560:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:560:6: note: in expansion of macro ‘CCTBX_ASSERT’ 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:561:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:561:6: note: in expansion of macro ‘CCTBX_ASSERT’ 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:189:38: required from here 189 | .def("r_intensity_sq", &w_t::r_intensity_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:604:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:604:6: note: in expansion of macro ‘CCTBX_ASSERT’ 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:605:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:605:6: note: in expansion of macro ‘CCTBX_ASSERT’ 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:606:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:606:6: note: in expansion of macro ‘CCTBX_ASSERT’ 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:196:39: required from here 196 | .def("r_amplitude_abs", &w_t::r_amplitude_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:649:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:649:6: note: in expansion of macro ‘CCTBX_ASSERT’ 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:650:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:650:6: note: in expansion of macro ‘CCTBX_ASSERT’ 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:651:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:651:6: note: in expansion of macro ‘CCTBX_ASSERT’ 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:203:38: required from here 203 | .def("r_amplitude_sq", &w_t::r_amplitude_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:697:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:697:6: note: in expansion of macro ‘CCTBX_ASSERT’ 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:698:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:698:6: note: in expansion of macro ‘CCTBX_ASSERT’ 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:699:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:699:6: note: in expansion of macro ‘CCTBX_ASSERT’ 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:263:45: required from here 263 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:997:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:997:19: note: in expansion of macro ‘CCTBX_ASSERT’ 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1003:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1003:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1006:41: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1006:13: note: in expansion of macro ‘CCTBX_ASSERT’ 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1010:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1010:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:275:45: required from here 275 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:936:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:936:17: note: in expansion of macro ‘CCTBX_ASSERT’ 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:942:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:942:19: note: in expansion of macro ‘CCTBX_ASSERT’ 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:945:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:945:17: note: in expansion of macro ‘CCTBX_ASSERT’ 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:948:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:948:17: note: in expansion of macro ‘CCTBX_ASSERT’ 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ g++ -o chiltbx/handle_test -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread chiltbx/handle_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o cma_es/cma/cmaes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cma_es/cma/cmaes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘cctbx::xray::twin_targets::hemihedral_r_values::hemihedral_r_values(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value&>; Value = cctbx::xray::twin_targets::hemihedral_r_values; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<5>::apply::execute(PyObject*, t0, t1, t2, t3, t4) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&; t4 = const scitbx::mat3&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; W = cctbx::xray::twin_targets::hemihedral_r_values; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:169:13: required from here 168 | class_("hemihedral_r_values", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | .def(init< | ~~~~^~~~~~ 170 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 1 obs indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 2 calc indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | sgtbx::space_group const&, // 3 space group | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | bool const&, // 4 anomalous flag | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | scitbx::mat3 const& // 5 twin law | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 | > | ~ 176 | ((arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~ 177 | arg("hkl_calc"), | ~~~~~~~~~~~~~~~~ 178 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 179 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 180 | arg("twin_law") | ~~~~~~~~~~~~~~~ 181 | ))) | ~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:544:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 544 | for (long ii=0;ii::refine(const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/quadrature.h:523:14: required from ‘scitbx::math::quadrature::gauss_legendre_engine::gauss_legendre_engine(const int&) [with FloatType = double]’ 523 | x = refine( start_guess ); | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/twin_targets.h:1070:68: required from ‘cctbx::xray::twin_targets::single_twin_likelihood::single_twin_likelihood(const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const bool&, const bool&, const FloatType&, const FloatType&, const FloatType&, const int&) [with FloatType = double]’ 1070 | scitbx::math::quadrature::gauss_legendre_engine tmp_gle(n_quad_); | ^~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8, A9, A10, A11, A12, A13) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; A9 = boost::python::objects::reference_to_value; A10 = boost::python::objects::reference_to_value; A11 = boost::python::objects::reference_to_value; A12 = boost::python::objects::reference_to_value; A13 = boost::python::objects::reference_to_value; Value = cctbx::xray::twin_targets::single_twin_likelihood; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<14>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8, t9, t10, t11, t12, t13) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector14; PyObject = _object; t0 = const double&; t1 = const double&; t2 = const double&; t3 = const double&; t4 = const double&; t5 = const double&; t6 = const double&; t7 = const double&; t8 = const bool&; t9 = const bool&; t10 = const double&; t11 = const double&; t12 = const double&; t13 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector14; NArgs = boost::mpl::size >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init; W = cctbx::xray::twin_targets::single_twin_likelihood; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/boost_python/twin_targets.cpp:343:14: required from here 342 | class_("single_twin_likelihood", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | .def(init< | ~~~~^~~~~~ 344 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 | bool const&, bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | double const&, int const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 | > | ~ 352 | ((arg("i_obs1"), arg("s_obs1"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | arg("i_obs2"), arg("s_obs2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 | arg("f_calc1"), arg("f_calc2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 | arg("eps1"), arg("eps2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | arg("centric1"),arg("centric2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 | arg("alpha"), arg("beta"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | arg("twin_fraction"), arg("n_quad") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | )) | ~~ 360 | ) | ~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/quadrature.h:546:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 546 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘unsigned int dxtbx::boost_python::cbf_decompress(const char*, std::size_t, int*, std::size_t)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:124:50: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | while ((j < packed_sz) && ((values - original) < values_sz)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘void dxtbx::boost_python::rod_TY5_TY6_decompress(int*, const char*, const char*, int, int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:207:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 207 | for (size_t iy = 0; iy < slow; iy++) { | ~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:228:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 228 | for (int k = 0; k < nblock; k++) { | ~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:254:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 254 | for (int j = 0; j < nbit; j++) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:261:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 261 | for (int j = 0; j < BLOCKSIZE; j++) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:282:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < nrest; i++) { | ~~^~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/flumpy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/imageset_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘scitbx::af::flex_int dxtbx::boost_python::uncompress(const boost::python::api::object&, const int&, const int&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 183 | DXTBX_ASSERT(nn == (slow * fast)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:5: note: in expansion of macro ‘DXTBX_ASSERT’ 183 | DXTBX_ASSERT(nn == (slow * fast)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘void dxtbx::boost_python::radial_average(scitbx::af::versa >&, scitbx::af::versa >&, const scitbx::vec2&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, double, double, const scitbx::vec2&, const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:218:43: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 218 | for (std::size_t y = upper_left[1]; y < lower_right[1]; y++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:219:45: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 219 | for (std::size_t x = upper_left[0]; x < lower_right[0]; x++) { g++ -o dxtbx/src/dxtbx/format/boost_python/image_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = bool; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/nexus_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp:10:1: warning: ‘typedef’ was ignored in this declaration 10 | typedef struct cbf_handle_struct; | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = signed char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = float; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = double; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:138:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:140:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 140 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:166:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:168:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 168 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = long unsigned int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:191:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:193:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:215:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:217:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 217 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:113:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:115:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/masking/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:24, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:25: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:27: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = bool]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = int]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = double]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/beam.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/detector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/goniometer_shadow_masking.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:30: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::ImageBuffer dxtbx::ImageSet::get_raw_data(std::size_t)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:651:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | if (data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::Image dxtbx::ImageSet::get_raw_data_as_double(std::size_t)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1119:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1119 | if (double_raw_data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1206:12: note: by ‘dxtbx::ImageSet dxtbx::ImageGrid::partial_set(std::size_t, std::size_t) const’ 1206 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1142:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1142:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1156:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1156:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1477:12: note: by ‘dxtbx::ImageSet dxtbx::ImageSequence::partial_set(std::size_t, std::size_t) const’ 1477 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1241:23: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1241 | if (data.size() != scan->get_num_images()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1280:26: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1280 | if (indices.size() != scan->get_num_images()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘void dxtbx::ImageSequence::set_scan(const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1402:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1402 | if (scan->get_num_images() != size()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1418:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:1418:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:469:56: required from here 469 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:471:55: required from here 471 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:473:53: required from here 473 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::BeamBase; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:250:56: required from here 250 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 251 | obj, | ~~~~ 252 | boost::python::extract(models[0])(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 | &ImageSetData::set_beam); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Detector; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:254:56: required from here 254 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 255 | obj, | ~~~~ 256 | boost::python::extract(models[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | &ImageSetData::set_detector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Goniometer; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:258:58: required from here 258 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 259 | obj, | ~~~~ 260 | boost::python::extract(models[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 | &ImageSetData::set_goniometer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Scan; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:262:52: required from here 262 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 263 | obj, | ~~~~ 264 | boost::python::extract(models[3]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 | &ImageSetData::set_scan); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_tuple(dxtbx::model::CrystalBase&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:119:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 119 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_list(dxtbx::model::CrystalBase&, boost::python::list)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:129:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 129 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_B_covariance_from_tuple(dxtbx::model::CrystalBase&, boost::python::api::object)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:141:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 141 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_tuple(dxtbx::model::Beam&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:209:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 209 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_list(dxtbx::model::Beam&, boost::python::list)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:219:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 219 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static boost::python::tuple dxtbx::model::boost_python::PolychromaticBeamPickleSuite::getstate(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:302:32: warning: unused variable ‘beam’ [-Wunused-variable] 302 | const PolychromaticBeam &beam = | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static void dxtbx::model::boost_python::PolychromaticBeamPickleSuite::setstate(boost::python::api::object, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:308:26: warning: unused variable ‘beam’ [-Wunused-variable] 308 | PolychromaticBeam &beam = boost::python::extract(obj)(); | ^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:22: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:23: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘void dxtbx::model::boost_python::detector_detail::node_from_dict(boost::python::dict, dxtbx::model::Detector::Node*, boost::python::list, scitbx::af::ref)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:88:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:88:9: note: in expansion of macro ‘DXTBX_ASSERT’ 88 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:9: note: in expansion of macro ‘DXTBX_ASSERT’ 89 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:100:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 100 | for (std::size_t i = 0; i < boost::python::len(obj["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:124:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 124 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:134:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 134 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict, const dxtbx::format::Image&, const dxtbx::format::Image&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:158:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 158 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:168:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 168 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In static member function ‘static void dxtbx::model::boost_python::detector_detail::DetectorPickleSuite::copy_node(dxtbx::model::Detector::Node::pointer, boost::python::dict, boost::python::list)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:228:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 228 | for (std::size_t i = 0; i < boost::python::len(node["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:19: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment_list.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/history.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/history.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment_list.h:23, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/experiment_list.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_tuple(dxtbx::model::Goniometer&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:79:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 79 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_list(dxtbx::model::Goniometer&, boost::python::list)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList* dxtbx::model::boost_python::make_experiment_list(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:30:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 30 | for (std::size_t i = 0; i < boost::python::len(items); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_setitem(dxtbx::model::ExperimentList&, int, dxtbx::model::Experiment)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:174:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::Experiment& dxtbx::model::boost_python::experiment_list_getitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:184:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList dxtbx::model::boost_python::experiment_list_getitem_slice(const dxtbx::model::ExperimentList&, boost::python::slice)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:193:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 193 | for (std::size_t i = as.start; i < as.stop && i < self.size(); i += as.step) { | ~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_delitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:203:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/model_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/panel.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:21: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:16: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc: In function ‘T* dxtbx::model::boost_python::from_dict(boost::python::dict) [with T = dxtbx::model::MultiAxisGoniometer]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:105:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 105 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/parallax_correction.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/scan.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc:14: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/spectrum.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cbflib_adaptbx -I/usr/include/python3.13 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:19: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec2.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:17: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In static member function ‘static void dxtbx::model::boost_python::ScanPickleSuite::setstate(dxtbx::model::Scan&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:41: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:7: note: in expansion of macro ‘DXTBX_ASSERT’ 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::dict dxtbx::model::boost_python::MaptoPythonDict(dxtbx::model::ExpImgRangeMap)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:187:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | for (int k = 0; k < val.size(); ++k) { | ~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::list dxtbx::model::boost_python::get_valid_image_ranges(dxtbx::model::Scan&, std::string)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:374:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 374 | for (int k = 0; k < ranges.size(); ++k) { | ~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc:16: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:24: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T* dxtbx::af::flex_table_suite::make_flex_table(boost::python::list) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1233:42: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:416:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 416 | for (std::size_t i = 0; i < len(columns); ++i) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::setitem_row(T&, typename T::size_type, boost::python::dict) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; typename T::size_type = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1252:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:525:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 525 | for (std::size_t i = 0; i < len(row); ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T dxtbx::af::flex_table_suite::select_cols_tuple(const T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1265:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:747:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 747 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::set_selected_cols_tuple(T&, boost::python::tuple, const T&) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1269:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:838:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 838 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::del_selected_cols_tuple(T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1273:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 | .def("del_selected", &del_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 | .def("del_selected", &del_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 | .def("del_selected", &del_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 | .def("del_selected", &del_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:890:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 890 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ g++ -o lib/libcbf-private.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libcbf-private.so.0 cbflib_adaptbx/detectors/mar_adaptor.o cbflib_adaptbx/detectors/cbf_adaptor.o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o cbflib_adaptbx/detectors/buffer_based_service.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lboost_thread -lhdf5 -lcbf Create symlinks for: 'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so.0'->'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so'->'lib/libcbf-private.so.0.0.1' g++ -o exe_dev/cbflib.tst_memory -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cbflib_adaptbx/detectors/tst_memory.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lcbf -lcbf-private -lm -lhdf5 g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/convert_ccp4_symop_lib.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/find_distances.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/getting_started.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/lattice_symmetry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/sym_equiv_sites.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread cctbx/examples/sys_abs_equiv_space_groups.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o fable/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_10x20.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/font_ucs_10x20.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/spectrum.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o gltbx/font_ucs_8x13.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/font_ucs_8x13.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_9x15.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/font_ucs_9x15.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/fonts_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/fonts_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/str_ref.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/format.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp: In function ‘unsigned int fable::ext::get_code_stop(const boost::python::api::object&, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:24:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | TBXX_ASSERT(stop <= len_code); | ~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp: In function ‘int fable::ext::floating_point_scan_after_dot(const boost::python::api::object&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/ext.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 71 | if (i < code_stop) { | ~~^~~~~~~~~~~ g++ -o gltbx/gl_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_defines_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_defines_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_defines_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_defines_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_defines_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_defines_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/gl_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_08_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_08_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_09_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_09_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_10_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_10_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:23: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/scan.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ In file included from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:11: /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec2&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec2]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec3&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec3]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ g++ -o gltbx/gl_functions_11_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_11_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_12_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_12_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_13_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_13_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_14_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_14_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_15_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/gl_functions_15_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/glu_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/glu_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/glu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/glu_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/glu_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/glu_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 gltbx/glu_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/quadrics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/quadrics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/util_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/util_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/viewer_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/gltbx/viewer_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/ccp4_map/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/cif/boost_python/cif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/cif/boost_python/cif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/bruker.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/bruker.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/bruker_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_set_grid(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 178 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:213:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 213 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 215 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:216:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 216 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_box(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:245:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 278 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:280:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 280 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:281:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 281 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_p1_cell(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/ccp4_map/ext.cpp:311:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/detectors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/image_divider.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/image_divider.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/dsn6/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/dsn6/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/misc/boost_python/dtrek_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/misc/boost_python/scalepack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/batch_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp: In member function ‘void iotbx::mtz::column::set_reals(const scitbx::af::const_ref&, const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp:253:48: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.cpp:253:5: note: in expansion of macro ‘IOTBX_ASSERT’ 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/crystal_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch_bpl.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::batch; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch_bpl.cpp:78:60: required from here 78 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 79 | "shared_batch"); | ~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/mtz/dataset.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column_bpl.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::column; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/column_bpl.cpp:76:60: required from here 76 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 77 | "shared_column"); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/mtz/dataset_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/object.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/object_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal_bpl.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::crystal; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal_bpl.cpp:42:60: required from here 42 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 43 | "shared_crystal"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/pdb/atom_selection.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/atom_selection.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/sym_equiv.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/miller/asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp: In member function ‘void iotbx::mtz::object::replace_miller_indices(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:433:40: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:433:5: note: in expansion of macro ‘IOTBX_ASSERT’ 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:435:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for(int i_refl=0;i_refl iotbx::mtz::object::extract_integers(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:624:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 624 | for(int i=0;i iotbx::mtz::object::extract_reals(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.cpp:684:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 684 | for(int i=0;i&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::dataset; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset_bpl.cpp:43:60: required from here 43 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 44 | "shared_dataset"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object_bpl.cpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/pdb/common_residue_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/common_residue_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/construct_hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/construct_hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atom_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:244:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:250:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 250 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:259:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 259 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.cpp:263:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 263 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_select.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h: At global scope: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_write.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/cassert:46, from /usr/include/boost/function/function_template.hpp:20, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:87:36: required from here 87 | class_ wa = wat::wrap("af_shared_atom"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hybrid_36_c.c /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom_with_labels; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:91:44: required from here 91 | class_ wawl = wawl_t::wrap("af_shared_atom_with_labels"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/hybrid_36_cpp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable iotbx/pdb/hybrid_36_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/input.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/input.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem.hpp:10, from iotbx/pdb/hybrid_36_fem.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/file_utils.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/input.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/input_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread iotbx/pdb/hybrid_36_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o iotbx/pdb/input_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/input_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/overall_counts.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/rna_dna_atom_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/write_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/write_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/xray_structure_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/shelx/shelx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/wildcard_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/wildcard_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/xray_structure.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/pdb/xray_structure_bpl.cpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o lib/libann_adaptor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libann_adaptor.so.0 annlib_adaptbx/ann/ann_adaptor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lann-cctbx Create symlinks for: 'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so.0'->'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so'->'lib/libann_adaptor.so.0.0.1' g++ -o lib/annlib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=annlib_ext.so.0 annlib_adaptbx/ann/boost_python/annlib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lann-cctbx -lann_adaptor -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so.0'->'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so'->'lib/annlib_ext.so.0.0.1' g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so.0'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm -lboost_timer Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm -lboost_timer Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm -lboost_timer g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm -lboost_timer Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' g++ -o lib/cbflib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cbflib_ext.so.0 cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lcbf-private -lcbf -lboost_thread -lboost_python313 -lm -lhdf5 Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' g++ -o lib/libccp4io.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libccp4io.so.0 ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/printf_wrappers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lm -lccp4c Create symlinks for: 'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so.0'->'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so'->'lib/libccp4io.so.0.0.1' g++ -o lib/ccp4io_adaptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=ccp4io_adaptbx_ext.so.0 ccp4io_adaptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lccp4io -lccp4c -lssm -lmmdb2 -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so.0'->'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so'->'lib/cbflib_ext.so.0.0.1' g++ -o scitbx/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' Create symlinks for: 'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so.0'->'lib/ccp4io_adaptbx_ext.so.0.0.1' 'lib/ccp4io_adaptbx_ext.so'->'lib/ccp4io_adaptbx_ext.so.0.0.1' g++ -o scitbx/boost_python/slice.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/slice.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/cma_es_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cma_es_ext.so.0 cma_es/cma_es_ext.o cma_es/cma/cmaes.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so.0'->'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so'->'lib/cma_es_ext.so.0.0.1' g++ -o lib/dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_ext.so.0 dxtbx/src/dxtbx/boost_python/ext.o dxtbx/src/dxtbx/boost_python/compression.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python313 -lcbf Create symlinks for: 'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so.0'->'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so'->'lib/dxtbx_ext.so.0.0.1' g++ -o lib/dxtbx_format_image_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_image_ext.so.0 dxtbx/src/dxtbx/format/boost_python/image_ext.o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python313 -lcbf -lhdf5 g++ -o lib/dxtbx_format_nexus_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_nexus_ext.so.0 dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python313 -lcbf -lhdf5 g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=fable_ext.so.0 fable/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so.0'->'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so'->'lib/dxtbx_format_nexus_ext.so.0.0.1' g++ -o lib/iotbx_ccp4_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_ccp4_map_ext.so.0 iotbx/ccp4_map/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lccp4c -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o ucif/cifParser.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ucif/cifParser.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so.0'->'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so'->'lib/iotbx_ccp4_map_ext.so.0.0.1' g++ -o ucif/cifLexer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/ucif/cifLexer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so.0'->'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so'->'lib/dxtbx_format_image_ext.so.0.0.1' g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python313 -lm g++ -o lib/libiotbx_mtz.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_mtz.so.0 iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lccp4io -lccp4c -lm -lboost_thread Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -shared -rdynamic -std=c++14 -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 Create symlinks for: 'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so.0'->'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so'->'lib/libiotbx_mtz.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o cctbx/uctbx/boost_python/niggli_reduction.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' g++ -o lib/dxtbx_flumpy.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_flumpy.so.0 dxtbx/src/dxtbx/boost_python/flumpy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python313 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python313 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' g++ -o lib/gltbx_fonts_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_fonts_ext.so.0 gltbx/fonts_ext.o gltbx/font_ucs_8x13.o gltbx/font_ucs_9x15.o gltbx/font_ucs_10x20.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so.0'->'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so'->'lib/gltbx_fonts_ext.so.0.0.1' g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' g++ -o lib/gltbx_util_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_util_ext.so.0 gltbx/util_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lGLU -lGL -lm g++ -o lib/iotbx_cif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_cif_ext.so.0 iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm -lantlr3c Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so.0'->'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so'->'lib/iotbx_cif_ext.so.0.0.1' g++ -o lib/iotbx_mtz_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_mtz_ext.so.0 iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_mtz -lcctbx -lccp4io -lccp4c -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o lib/gltbx_quadrics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_quadrics_ext.so.0 gltbx/quadrics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lGLU -lGL -lm g++ -o lib/dxtbx_masking_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_masking_ext.so.0 dxtbx/src/dxtbx/masking/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python313 -lcbf -lhdf5 Create symlinks for: 'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so.0'->'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so'->'lib/gltbx_util_ext.so.0.0.1' g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so.0'->'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so'->'lib/dxtbx_flumpy.so.0.0.1' g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so.0'->'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so'->'lib/gltbx_quadrics_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_bcr_bcr_ext.so.0 cctbx/maptbx/bcr/bcr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so.0'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so.0'->'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so'->'lib/iotbx_mtz_ext.so.0.0.1' g++ -o lib/dxtbx_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_model_ext.so.0 dxtbx/src/dxtbx/model/boost_python/beam.o dxtbx/src/dxtbx/model/boost_python/spectrum.o dxtbx/src/dxtbx/model/boost_python/goniometer.o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o dxtbx/src/dxtbx/model/boost_python/panel.o dxtbx/src/dxtbx/model/boost_python/detector.o dxtbx/src/dxtbx/model/boost_python/scan.o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o dxtbx/src/dxtbx/model/boost_python/crystal.o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o dxtbx/src/dxtbx/model/boost_python/history.o dxtbx/src/dxtbx/model/boost_python/experiment.o dxtbx/src/dxtbx/model/boost_python/experiment_list.o dxtbx/src/dxtbx/model/boost_python/model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python313 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python313 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' g++ -o lib/gltbx_glu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_glu_ext.so.0 gltbx/glu_ext.o gltbx/glu_defines_00_bpl.o gltbx/glu_defines_01_bpl.o gltbx/glu_functions_00_bpl.o gltbx/glu_functions_01_bpl.o gltbx/glu_functions_02_bpl.o gltbx/glu_functions_03_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so.0'->'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so'->'lib/gltbx_glu_ext.so.0.0.1' g++ -o lib/gltbx_viewer_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_viewer_utils_ext.so.0 gltbx/viewer_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lGLU -lGL -lm Create symlinks for: 'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so.0'->'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so'->'lib/dxtbx_masking_ext.so.0.0.1' g++ -o lib/gltbx_gl_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_gl_ext.so.0 gltbx/gl_ext.o gltbx/gl_defines_00_bpl.o gltbx/gl_defines_01_bpl.o gltbx/gl_defines_02_bpl.o gltbx/gl_defines_03_bpl.o gltbx/gl_defines_04_bpl.o gltbx/gl_defines_05_bpl.o gltbx/gl_defines_06_bpl.o gltbx/gl_defines_07_bpl.o gltbx/gl_functions_00_bpl.o gltbx/gl_functions_01_bpl.o gltbx/gl_functions_02_bpl.o gltbx/gl_functions_03_bpl.o gltbx/gl_functions_04_bpl.o gltbx/gl_functions_05_bpl.o gltbx/gl_functions_06_bpl.o gltbx/gl_functions_07_bpl.o gltbx/gl_functions_08_bpl.o gltbx/gl_functions_09_bpl.o gltbx/gl_functions_10_bpl.o gltbx/gl_functions_11_bpl.o gltbx/gl_functions_12_bpl.o gltbx/gl_functions_13_bpl.o gltbx/gl_functions_14_bpl.o gltbx/gl_functions_15_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so.0'->'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so'->'lib/gltbx_viewer_utils_ext.so.0.0.1' g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' Create symlinks for: 'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so.0'->'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so'->'lib/gltbx_gl_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/dxtbx_imageset_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_imageset_ext.so.0 dxtbx/src/dxtbx/boost_python/imageset_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/base/lib -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lm -ltiff -lboost_python313 -lcbf -lhdf5 -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python313 -lcbf -lhdf5 Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so.0'->'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so'->'lib/dxtbx_model_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/hough.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/hough.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/spotfilter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/spotfilter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/masks/atom_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/masks/atom_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/decompose.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/decompose.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' g++ -o rstbx/dps_core/dps_core.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/dps_core.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o rstbx/dps_core/directional_fft.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/directional_fft.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libspotfinder.so.0 spotfinder/core_toolbox/spot.o spotfinder/core_toolbox/libdistl.o spotfinder/core_toolbox/hough.o spotfinder/core_toolbox/distl.o spotfinder/core_toolbox/spotfilter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' g++ -o rstbx/indexing_api/indexing_api.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/indexing_api.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so.0'->'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so'->'lib/libspotfinder.so.0.0.1' g++ -o lib/libdxtbxspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libdxtbxspotfinder.so.0 spotfinder/dxtbx_toolbox/libdistl.o spotfinder/dxtbx_toolbox/distl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lspotfinder -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so.0'->'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so'->'lib/libdxtbxspotfinder.so.0.0.1' g++ -o rstbx/diffraction/ewald_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/ewald_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so.0'->'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so'->'lib/dxtbx_imageset_ext.so.0.0.1' g++ -o rstbx/diffraction/partial_spot_position_partial_H.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/partial_spot_position_partial_H.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libmmtbx_tls.so.0.0.1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libmmtbx_tls.so.0 mmtbx/tls/decompose.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lm Create symlinks for: 'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so.0'->'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so'->'lib/libmmtbx_tls.so.0.0.1' g++ -o scitbx/minpack/raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/slatec/lib_c.c g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lm g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lm g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/rigid.cpp g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/librstbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=librstbx.so.0 rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/indexing_api/indexing_api.o rstbx/diffraction/ewald_sphere.o rstbx/diffraction/partial_spot_position_partial_H.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lcctbx -lm Create symlinks for: 'lib/librstbx.so.0.0.1' 'lib/librstbx.so.0'->'lib/librstbx.so.0.0.1' 'lib/librstbx.so'->'lib/librstbx.so.0.0.1' g++ -o smtbx/refinement/constraints/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/alignment/alignment_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/alignment/alignment_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/building/loop_closure/ccd_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/building/loop_closure/ccd_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/bulk_solvent/bulk_solvent_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/bulk_solvent/bulk_solvent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/den/boost_python/den_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/den/boost_python/den_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/secondary_structure/dssp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/secondary_structure/dssp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libmmtbx_masks.so.0.0.1 -shared -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -Wl,-soname=libmmtbx_masks.so.0 mmtbx/masks/atom_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread -shared -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/scaled_adp.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread Create symlinks for: 'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so.0'->'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so'->'lib/libmmtbx_masks.so.0.0.1' g++ -o mmtbx/dynamics/dynamics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/dynamics/dynamics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o mmtbx/dynamics/dynamics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/dynamics/dynamics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/f_model/f_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/f_model/f_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry/boost_python/asa_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/asa_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/den/den.h:2, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/den/boost_python/den_ext.cpp:12: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::den::den_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/den/boost_python/den_ext.cpp:53:78: required from here 53 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 54 | "shared_den_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_alignment_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_alignment_ext.so.0 mmtbx/alignment/alignment_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so.0'->'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so'->'lib/mmtbx_alignment_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/clash_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/clash_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_dssp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dssp_ext.so.0 mmtbx/secondary_structure/dssp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so.0'->'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so'->'lib/mmtbx_dssp_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/indexing_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_dynamics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dynamics_ext.so.0 mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so.0'->'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so'->'lib/mmtbx_dynamics_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/primitive_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/primitive_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_building_loop_closure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_building_loop_closure_ext.so.0 mmtbx/building/loop_closure/ccd_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -liotbx_pdb -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so.0'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/shared_types_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/asa_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/clash_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/extract.hpp:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_den_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_den_restraints_ext.so.0 mmtbx/den/boost_python/den_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/mmtbx_geometry_primitive_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_primitive_ext.so.0 mmtbx/geometry/boost_python/primitive_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so.0'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry/boost_python/sphere_surface_sampling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so.0'->'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so'->'lib/mmtbx_den_restraints_ext.so.0.0.1' g++ -o mmtbx/hydrogens/hydrogens_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/hydrogens/hydrogens_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_shared_types_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_shared_types_ext.so.0 mmtbx/geometry/boost_python/shared_types_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so.0'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' g++ -o mmtbx/masks/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/masks/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_f_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_f_model_ext.so.0 mmtbx/f_model/f_model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so.0'->'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so'->'lib/mmtbx_f_model_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/max_lik/max_lik_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_sphere_surface_sampling_ext.so.0 mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/max_lik/max_lik.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_hydrogens_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_hydrogens_ext.so.0 mmtbx/hydrogens/hydrogens_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so.0'->'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so'->'lib/mmtbx_hydrogens_ext.so.0.0.1' g++ -o mmtbx/bulk_solvent/mosaic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/bulk_solvent/mosaic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_masks_ext.so.0 mmtbx/masks/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/mmtbx_bulk_solvent_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_bulk_solvent_ext.so.0 mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so.0'->'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so'->'lib/mmtbx_masks_ext.so.0.0.1' Create symlinks for: 'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so.0'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' g++ -o mmtbx/ncs/cartesian_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/ncs/cartesian_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/ncs/tncs_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/ncs/tncs_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/pair_interaction/interaction_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/pair_interaction/interaction_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_indexing_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_indexing_ext.so.0 mmtbx/geometry/boost_python/indexing_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so.0'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' g++ -o mmtbx/probe/boost_python/probe_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/probe/boost_python/probe_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_max_lik_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_max_lik_ext.so.0 mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so.0'->'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so'->'lib/mmtbx_max_lik_ext.so.0.0.1' g++ -o mmtbx/probe/Scoring.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/probe/Scoring.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_clash_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_clash_ext.so.0 mmtbx/geometry/boost_python/clash_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/mmtbx_mosaic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_mosaic_ext.so.0 mmtbx/bulk_solvent/mosaic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so.0'->'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so'->'lib/mmtbx_mosaic_ext.so.0.0.1' g++ -o mmtbx/probe/DotSpheres.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/probe/DotSpheres.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so.0'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' g++ -o mmtbx/probe/SpatialQuery.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/probe/SpatialQuery.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_cartesian_restraints_ext.so.0 mmtbx/ncs/cartesian_restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' g++ -o mmtbx/reduce/boost_python/reduce_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/reduce/boost_python/reduce_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/reduce/PositionReturn.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/reduce/PositionReturn.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/ramachandran.h:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i mmtbx::geometry_restraints::target_phi_psi(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const phi_psi_proxy&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/ramachandran.h:314:35: required from here 314 | r = target_phi_psi(general_table, sites_cart, proxy);} | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/ramachandran.h:269:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 269 | for(int i=0; i, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 284 | for(int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/format/parsing.hpp:21, from /usr/include/boost/format.hpp:50, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/dihedral.h:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::phi_psi_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:52:75: required from here 52 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 53 | "shared_phi_psi_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ ar rc probe/lib/libprobelib.a mmtbx/probe/Scoring.o mmtbx/probe/DotSpheres.o mmtbx/probe/SpatialQuery.o g++ -o lib/mmtbx_ncs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_ext.so.0 mmtbx/ncs/tncs_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so.0'->'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so'->'lib/mmtbx_ncs_ext.so.0.0.1' g++ -o mmtbx/reduce/InteractionGraph.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/reduce/InteractionGraph.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ranlib probe/lib/libprobelib.a g++ -o lib/mmtbx_pair_interaction_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_pair_interaction_ext.so.0 mmtbx/pair_interaction/interaction_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so.0'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' g++ -o mmtbx/reduce/Optimizers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/reduce/Optimizers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/rotamer/fit_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/rotamer/fit_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/reference_coordinate.h:2, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:13: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = mmtbx::geometry_restraints::reference_coordinate_proxy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:80:41: required from here 80 | cctbx::geometry_restraints::shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::reference_coordinate_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:61:25: required from here 61 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 62 | "shared_reference_coordinate_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o mmtbx/rsr/rsr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/rsr/rsr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_asa_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_asa_ext.so.0 mmtbx/geometry/boost_python/asa_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so.0'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' g++ -o mmtbx/scaling/scaling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/scaling/scaling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_probe_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_probe_ext.so.0 mmtbx/probe/boost_python/probe_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/probe/lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/mmtbx_ramachandran_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ramachandran_restraints_ext.so.0 mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so.0'->'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so'->'lib/mmtbx_probe_ext.so.0.0.1' g++ -o mmtbx/scaling/twinning_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/scaling/twinning_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so.0'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/scaling/relative_scaling_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_rotamer_fit_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rotamer_fit_ext.so.0 mmtbx/rotamer/fit_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so.0'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' g++ -o mmtbx/scaling/outlier_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/scaling/outlier_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reference_coordinate_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reference_coordinate_ext.so.0 mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so.0'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' g++ -o mmtbx/secondary_structure/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/secondary_structure/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_rsr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rsr_ext.so.0 mmtbx/rsr/rsr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so.0'->'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so'->'lib/mmtbx_rsr_ext.so.0.0.1' g++ -o mmtbx/tls/decompose_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/decompose_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc reduce/lib/libreduce2lib.a mmtbx/reduce/PositionReturn.o mmtbx/reduce/InteractionGraph.o mmtbx/reduce/Optimizers.o ranlib reduce/lib/libreduce2lib.a g++ -o mmtbx/tls/tls_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/tls_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/optimise_amplitudes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/optimise_amplitudes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_secondary_structure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_secondary_structure_ext.so.0 mmtbx/secondary_structure/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so.0'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/optimise_amplitudes_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_decompose_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_decompose_ext.so.0 mmtbx/tls/decompose_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so.0'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' g++ -o mmtbx/tls/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/tls/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/utils/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/utils/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_optimise_amplitudes_ext.so.0 mmtbx/tls/optimise_amplitudes.o mmtbx/tls/optimise_amplitudes_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' g++ -o mmtbx/validation/ramachandran/rama_eval_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/validation/ramachandran/rama_eval_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reduce_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reduce_ext.so.0 mmtbx/reduce/boost_python/reduce_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Lreduce/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/reduce/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/probe/lib -lreduce2lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o omptbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/omptbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so.0'->'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so'->'lib/mmtbx_reduce_ext.so.0.0.1' g++ -o rstbx/array_family/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/array_family/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/array_family/flex_rstbx_arrays.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/bandpass/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/bandpass/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/src -Irstbx/bandpass/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_scaling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_scaling_ext.so.0 mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so.0'->'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so'->'lib/mmtbx_scaling_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/detector_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/detector_model/detector_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_utils_ext.so.0 mmtbx/utils/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lomptbx -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/sensor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bpcx/detector_model/sensor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h: In constructor ‘rstbx::bandpass::active_area_filter::active_area_filter(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h:100:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i < tiles.size()/4; ++i){ | ~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h: In member function ‘bool rstbx::bandpass::active_area_filter::operator()(rstbx::bandpass::vec3, const int&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h:126:39: warning: comparison of integer expressions of different signedness: ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/parameters.h:126:9: note: in expansion of macro ‘SCITBX_ASSERT’ 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/subpixel_joint_model.h: In member function ‘void rstbx::bandpass::subpixel_joint_model::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/subpixel_joint_model.h:26:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/subpixel_joint_model.h:31:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::prescreen_indices(const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:46:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared rstbx::bandpass::use_case_bp3::selected_partialities() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:93:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:152:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 152 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow_force()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:296:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 296 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:462:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 | for ( int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectangles(rstbx::bandpass::vec3ref)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 477 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectregions(rstbx::bandpass::vec3ref, const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:511:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 511 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::enclosed_pixels() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:543:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 543 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hi_predictions() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:752:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 752 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_lo_predictions() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:763:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 763 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:774:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 774 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions_labelit_format() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:787:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 787 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hkls() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:802:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 802 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::restricted_to_active_areas(scitbx::af::shared, scitbx::af::shared >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:815:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 815 | for (int idx = 0; idx < active_areas.size(); idx+=4){ | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:828:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 828 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ //DEPRECATED | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In function ‘scitbx::af::shared > rstbx::bandpass::ext::use_case_bp2_picture_fast_slow(scitbx::af::shared >, const cctbx::crystal_orientation&, const scitbx::vec3&, const double&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const double&, const scitbx::vec3&, const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:933:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 933 | for (int idx = 0; idx < indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = resolution_limited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:616:87: required from here 616 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = unlimited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:620:78: required from here 620 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so.0'->'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so'->'lib/mmtbx_utils_ext.so.0.0.1' g++ -o rstbx/diffraction/fastbragg/fastbragg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/diffraction/fastbragg/fastbragg.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_validation_ramachandran_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_validation_ramachandran_ext.so.0 mmtbx/validation/ramachandran/rama_eval_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so.0'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' g++ -o rstbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_tls_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_ext.so.0 mmtbx/tls/tls_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o rstbx/indexing_api/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/indexing_api/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/src -Irstbx/indexing_api/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so.0'->'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so'->'lib/mmtbx_tls_ext.so.0.0.1' In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o rstbx/apps/integration_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/apps/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/src -Irstbx/apps/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/integration_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = scitbx::vec3; MillerConversionPolicy = rstbx::diffraction::fastbragg::vec3_double_miller_index_policy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:134:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = cctbx::miller::index<>; MillerConversionPolicy = rstbx::diffraction::fastbragg::integer_miller_index_policy]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:138:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 138 | .def("sweep_over_detector_integer_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | rstbx::diffraction::fastbragg::miller_t, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | rstbx::diffraction::fastbragg::integer_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o lib/rstbx_bpcx_detector_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bpcx_detector_model_ext.so.0 rstbx/bpcx/detector_model/detector_model_ext.o rstbx/bpcx/detector_model/sensor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so.0'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' g++ -o rstbx/simage/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/simage/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/src -Irstbx/simage/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/scope.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/bandpass/ext.cpp:4: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/real_to_complex.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/directional_fft.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/dps_core/dps_core.h:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/indexing_api.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/libdistl.h:81, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/distl.h:14, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/integration_ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/scanbox.h: In member function ‘Distl::interval_list Distl::scanbox_tiling_explicit::generate_defined_x_tiles(const int&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/iotbx/detectors/scanbox.h:268:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | for (int tile = 0 ; tile < tile_count; ++tile){ | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/detector.h:25, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/indexing_api.h:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::append_ISmask(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:222:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 222 | for (int i=0; i < mask.size(); i+=2){ | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::positional_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:273:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 273 | for (int i=0; i dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:287:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for (int p=0; p >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:310:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 310 | for (int i=0; i dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:320:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 320 | for (int p=0; p= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘scitbx::af::shared > rstbx::integration::simple_integration::safe_background(const scitbx::af::flex_int&, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:366:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 366 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 378 | for (int isort=0; isort dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:395:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 395 | for (int i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 495 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 550 | for (int i=0; i >, scitbx::af::shared >, scitbx::af::shared >)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/apps/stills/simple_integration.h:575:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 575 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 638 | for (int k=0; k >) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:435:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 435 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src/dxtbx/model/panel.h:436:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 436 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘void indexing_api::rayleigh_cpp::estimate_parameters_from_cdf(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:59:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 59 | for (int i=0; i < x_data.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::pdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:80:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::cdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:96:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::d_cdf_d_sigma(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::gradients(scitbx::af::shared, const int&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:129:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/indexing_api/ext.cpp:135:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for (int i = 0; i < gradients.size(); ++i){ | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/ext.cpp:2: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/image_simple.hpp: In member function ‘rstbx::simage::image_simple& rstbx::simage::image_simple::compute(const cctbx::uctbx::unit_cell&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const scitbx::mat3&, double, double, int, double, scitbx::vec2, scitbx::vec2, unsigned int, double)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/image_simple.hpp:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 144 | for(int i=0;i<=point_spread;i++) { | ~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/image_simple.hpp:148:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 148 | for(int j=0;j<=point_spread;j++) { | ~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/image_simple.hpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/ext.cpp: In function ‘std::string rstbx::simage::ext::combine_rgb_images(const boost::python::list&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simage/ext.cpp:58:42: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | TBXX_ASSERT(bp::len(rgb_images[j]) == img_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ g++ -o lib/rstbx_bandpass_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bandpass_ext.so.0 rstbx/bandpass/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lann-cctbx -lann_adaptor -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so.0'->'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so'->'lib/rstbx_bandpass_ext.so.0.0.1' g++ -o rstbx/simulation/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/simulation/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/src -Irstbx/simulation/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_diffraction_fastbragg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_diffraction_fastbragg_ext.so.0 rstbx/diffraction/fastbragg/fastbragg_ext.o rstbx/diffraction/fastbragg/fastbragg.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/rstbx_simage_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simage_ext.so.0 rstbx/simage/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so.0'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' Create symlinks for: 'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so.0'->'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so'->'lib/rstbx_simage_ext.so.0.0.1' g++ -o rstbx/symmetry/constraints/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -Irstbx/symmetry/constraints/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/symmetry/constraints/src -Irstbx/symmetry/constraints/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/symmetry/constraints/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/symmetry/constraints/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/ext.cpp:11: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::shared rstbx::xfel1::select_proximal_indices(const int&, const double&, const double&, const cctbx::crystal_orientation&, const double&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int x = 0; x < indices_all.size(); ++x){ | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::versa > rstbx::xfel1::raw_diffraction(scitbx::af::shared, scitbx::af::versa >, const size_t&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 178 | for (int mcount=0; mcount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 230 | for (int isel = 0; isel < selected.size(); ++isel){ | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h:231:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int imos = 0; imos < mosaic_perturbations.size(); ++imos){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/rstbx_indexing_api_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_indexing_api_ext.so.0 rstbx/indexing_api/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so.0'->'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so'->'lib/rstbx_indexing_api_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_grid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_integration_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_integration_ext.so.0 rstbx/apps/integration_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lann-cctbx -lann_adaptor -lspotfinder -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so.0'->'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so'->'lib/rstbx_integration_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp: In member function ‘const char* scitbx::af::boost_python::cost_of_m_handle_in_af_shared::operator()(unsigned int, unsigned int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:367:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 367 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:375:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 375 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:383:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 383 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/selections.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:2: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/selections.h: In instantiation of ‘scitbx::af::shared scitbx::af::reindexing_array(std::size_t, const const_ref&) [with IntType = int; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:544:7: required from here 544 | reindexing_array, | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/selections.h:156:35: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | SCITBX_ASSERT(iselection[i] < selectee_size); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/selections.h:156:7: note: in expansion of macro ‘SCITBX_ASSERT’ 156 | SCITBX_ASSERT(iselection[i] < selectee_size); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/c_grid_flex_conversions.h:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:10: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:84:46: required from here 84 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:85:45: required from here 85 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:86:36: required from here 86 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:87:36: required from here 87 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:88:36: required from here 88 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:89:36: required from here 89 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:90:37: required from here 90 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:91:39: required from here 91 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:92:39: required from here 92 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:93:39: required from here 93 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:94:39: required from here 94 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:95:39: required from here 95 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:96:53: required from here 96 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:97:53: required from here 97 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:98:53: required from here 98 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:100:50: required from here 100 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:101:51: required from here 101 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:102:55: required from here 102 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:103:55: required from here 103 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:104:55: required from here 104 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:105:58: required from here 105 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:106:53: required from here 106 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:107:53: required from here 107 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:108:53: required from here 108 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:110:54: required from here 110 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:112:46: required from here 112 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:113:46: required from here 113 | tuple_mapping_fixed_size >(); // scitbx/math/golay.h | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:115:49: required from here 115 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:117:50: required from here 117 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:118:50: required from here 118 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:119:50: required from here 119 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:120:50: required from here 120 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:122:53: required from here 122 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:123:53: required from here 123 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:124:53: required from here 124 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:127:51: required from here 127 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:128:52: required from here 128 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:129:42: required from here 129 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:130:42: required from here 130 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:131:45: required from here 131 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:132:63: required from here 132 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:133:45: required from here 133 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:134:49: required from here 134 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:135:51: required from here 135 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:136:52: required from here 136 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:137:42: required from here 137 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:138:42: required from here 138 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:139:45: required from here 139 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:140:45: required from here 140 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:141:49: required from here 141 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:143:60: required from here 143 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:144:60: required from here 144 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:146:54: required from here 146 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:147:54: required from here 147 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:148:54: required from here 148 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:149:54: required from here 149 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:150:54: required from here 150 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:151:54: required from here 151 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:153:64: required from here 153 | tuple_mapping_fixed_capacity(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 3>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:154:56: required from here 154 | tuple_mapping_fixed_capacity, 3> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 2>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:155:56: required from here 155 | tuple_mapping_fixed_capacity, 2> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 6>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:156:59: required from here 156 | tuple_mapping_fixed_capacity, 6> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 7>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:157:59: required from here 157 | tuple_mapping_fixed_capacity, 7> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:158:59: required from here 158 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_ext.cpp:159:59: required from here 159 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_tls_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_utils_ext.so.0 mmtbx/tls/utils.o mmtbx/tls/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so.0'->'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so'->'lib/mmtbx_tls_utils_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/rstbx/simulation/sim_xfel1.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = cctbx::crystal_orientation]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const cctbx::crystal_orientation&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = cctbx::crystal_orientation]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:429:8: required from here 429 | def("first_index", f_w::first_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:430:8: required from here 430 | def("last_index", f_w::last_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o lib/rstbx_symmetry_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_symmetry_constraints_ext.so.0 rstbx/symmetry/constraints/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so.0'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ g++ -o lib/rstbx_simulation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simulation_ext.so.0 rstbx/simulation/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so.0'->'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so'->'lib/rstbx_simulation_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ g++ -o lib/rstbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_ext.so.0 rstbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ Create symlinks for: 'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so.0'->'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so'->'lib/rstbx_ext.so.0.0.1' In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:119:74: required from here 119 | double (*matrix_norm_1)(const_ref const &) = matrix::norm_1; | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h:16:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:177:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:178:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | .def("matrix_norm_frobenius", matrix::norm_frobenius) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h:46:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int k=0; k < a_ij.size(); ++k) norm_accu(a_ij[k]); | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘scitbx::af::flex::type* scitbx::af::{anonymous}::from_list_or_tuple_of_lists_or_tuples(PyObject*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:154:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 154 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:206:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 206 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘std::string scitbx::af::{anonymous}::mathematica_form(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:452:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 452 | for (int i=1; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 454 | if (i != indices.size() - 1) o << ","; | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:365:26: required from here 365 | return matrix::norm_1(self); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/norms.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | for (int i=0; i scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:536:8: required from here 536 | def( | ~~~^ 537 | "double_from_byte_str", | ~~~~~~~~~~~~~~~~~~~~~~~ 538 | shared_from_byte_str, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | (arg("byte_str"))); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/byte_str.h:81:5: note: in expansion of macro ‘SCITBX_ASSERT’ 81 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o lib/rstbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_array_family_flex_ext.so.0 rstbx/array_family/ext.o rstbx/array_family/flex_rstbx_arrays.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so.0'->'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so'->'lib/rstbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:885:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 885 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/bits/stl_function.h:1480, from /usr/include/c++/15/string:51, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:886:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 886 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:132:16: required from here 132 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sort.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_weighted_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mean_and_variance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_linear_interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:2: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/basic_statistics.h: In instantiation of ‘scitbx::math::median_statistics scitbx::math::median_functor::dispersion(const scitbx::af::ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:31:26: required from ‘static scitbx::math::median_statistics scitbx::af::boost_python::median_functor_wrapper::dispersion(wt&, const scitbx::af::const_ref&) [with FloatType = double; wt = scitbx::math::median_functor]’ 31 | return O.dispersion(af::make_ref(buffer)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:40:13: required from ‘static void scitbx::af::boost_python::median_functor_wrapper::wrap(const char*) [with FloatType = double]’ 36 | class_(name, no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | .def(init<>()) | ~~~~~~~~~~~~~~ 38 | .def(init(arg("seed"))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | .def("__call__", call, arg("data")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | .def("dispersion", dispersion, arg("data")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_median.cpp:63:41: required from here 63 | median_functor_wrapper::wrap("median_functor"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/basic_statistics.h:210:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (int i=0; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp: In function ‘scitbx::af::flex >::type* scitbx::af::{anonymous}::array_indices_as_double_from_array_focus_dimensions(const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:128:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 128 | for(std::size_t i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::af::tiny; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::sym_mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::sym_mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::sym_mat3*; _Size = long unsigned int; _Tp = scitbx::sym_mat3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::mat3*; _Size = long unsigned int; _Tp = scitbx::mat3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec2; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec2*; _Size = long unsigned int; _Tp = scitbx::vec2]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/loops.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/show_sizes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:202:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:203:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:214:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:215:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here 191 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:86:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 86 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:224:3: required from here 199 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 132 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:132:5: note: in expansion of macro ‘SCITBX_ASSERT’ 132 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:138:5: note: in expansion of macro ‘SCITBX_ASSERT’ 138 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/optional/optional.hpp:25, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:40:53: required from here 40 | shared_wrapper, rir>::wrap("stl_vector_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:41:51: required from here 41 | shared_wrapper, rir>::wrap("stl_vector_double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/glmtbx/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:42:50: required from here 42 | shared_wrapper, rir>::wrap("stl_set_unsigned") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:48:37: required from here 48 | shared_wrapper >::wrap("mat3_int"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:49:40: required from here 49 | shared_wrapper >::wrap("tiny_int_3"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:50:40: required from here 50 | shared_wrapper >::wrap("tiny_int_4"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/shared_ext.cpp:51:40: required from here 51 | shared_wrapper >::wrap("tiny_int_2"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/graphics_utils/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/gridding.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/iso_surface/iso_surface_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors_ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp: In instantiation of ‘std::map > scitbx::cubicle_neighbors::neighbors_of(const scitbx::af::const_ref >&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors_ext.cpp:23:36: required from here 23 | .def("neighbors_of", &w_t::neighbors_of, ( | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:61:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 61 | if (i_cub[0] < 0 || i_cub[0] >= n_cubicles[0]) continue; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:63:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 63 | if (i_cub[1] < 0 || i_cub[1] >= n_cubicles[1]) continue; /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:65:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 65 | if (i_cub[2] < 0 || i_cub[2] >= n_cubicles[2]) continue; In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = scitbx::vec3; CubicleContentType = std::vector::cubicle_site, std::allocator::cubicle_site> >; FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors.hpp:43:30: required from ‘scitbx::cubicle_neighbors::cubicle_neighbors(const scitbx::af::const_ref >&, const FloatType&, const FloatType&) [with FloatType = double]’ 43 | cubicles_.i_cubicle(main_sites_cart[i_seq])); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; Value = scitbx::cubicle_neighbors<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<3>::apply::execute(PyObject*, t0, t1, t2) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector3 >&, const double&, const double&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const double&; t2 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector3 >&, const double&, const double&>; Arity = boost::mpl::size >&, const double&, const double&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const double&, const double&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const double&, const double&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const double&, const double&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const double&, const double&>; W = scitbx::cubicle_neighbors<>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicle_neighbors_ext.cpp:16:13: required from here 15 | class_("cubicle_neighbors", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 | .def(init< | ~~~~^~~~~~ 17 | af::const_ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 18 | double const&, | ~~~~~~~~~~~~~~ 19 | double const&>(( | ~~~~~~~~~~~~~~~~ 20 | arg("main_sites_cart"), | ~~~~~~~~~~~~~~~~~~~~~~~ 21 | arg("cubicle_edge"), | ~~~~~~~~~~~~~~~~~~~~ 22 | arg("epsilon")=1.e-6))) | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgs/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable scitbx/lbfgs/lbfgs_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/lbfgs_fem.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/linalg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j::minimizer(const int&, const int&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, bool, const FloatType&, const FloatType&, const int&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value >; A3 = boost::python::objects::reference_to_value >; A4 = boost::python::objects::reference_to_value >; A5 = bool; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; Value = scitbx::lbfgsb::minimizer; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<9>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; PyObject = _object; t0 = const int&; t1 = const int&; t2 = scitbx::af::shared; t3 = scitbx::af::shared; t4 = scitbx::af::shared; t5 = bool; t6 = const double&; t7 = const double&; t8 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; Arity = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, not_specified, not_specified, not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = scitbx::lbfgsb::minimizer; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:20:13: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 19 | class_("minimizer", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 20 | .def(init, | ~~~~~~~~~~~~~~~~~~~~~~ 23 | af::shared, | ~~~~~~~~~~~~~~~~~~~~~~ 24 | af::shared, | ~~~~~~~~~~~~~~~~ 25 | bool, | ~~~~~ 26 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 27 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 28 | int const&>()) | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:118:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 118 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:118:9: note: in expansion of macro ‘SCITBX_ASSERT’ 118 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:119:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 119 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:119:9: note: in expansion of macro ‘SCITBX_ASSERT’ 119 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:120:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 120 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb.h:120:9: note: in expansion of macro ‘SCITBX_ASSERT’ 120 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/eigensystem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm -lboost_numpy313 g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm -lboost_timer Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lstbx/boost_python/lstbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lstbx/boost_python/normal_equations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/basic_statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp: In function ‘int scitbx::lapack::boost_python::dsyev_wrapper(const std::string&, const std::string&, const scitbx::af::ref >&, const scitbx::af::ref&, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 246 | SCITBX_ASSERT(w.size() == n); | ~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:5: note: in expansion of macro ‘SCITBX_ASSERT’ 246 | SCITBX_ASSERT(w.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/golay.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm -lboost_numpy313 Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/minimum_covering_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/principal_axes_of_inertia.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/row_echelon.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/chebyshev.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/icosahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/slatec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/line_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/line_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/r3_rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/r3_rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/resample.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/resample.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/quadrature.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/quadrature.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/unimodular_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/unimodular_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/math/boost_python/halton.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/halton.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/least_squares_plane.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/least_squares_plane.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/continued_fraction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/continued_fraction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/numeric_limits.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/numeric_limits.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/exp_functions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/exp_functions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/zernike.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/2d_zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/weighted_covariance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/weighted_covariance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/tetrahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/boost_python/angle_derivative.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/minpack/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/r3_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/r3_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/raw.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/levenberg_marquardt.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/ext.cpp:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/levenberg_marquardt.h: In member function ‘void scitbx::minpack::levenberg_marquardt::process_fvec(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/levenberg_marquardt.h:80:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | SCITBX_ASSERT(fvec.size() == m); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/minpack/levenberg_marquardt.h:80:9: note: in expansion of macro ‘SCITBX_ASSERT’ 80 | SCITBX_ASSERT(fvec.size() == m); | ^~~~~~~~~~~~~ g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/random/boost_python/random_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/random/boost_python/basic_distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o scitbx/rigid_body/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/vector.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/approx_equal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/lu_factorization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rotr3.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/spatial_lib.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/featherstone.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:14: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 4]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:361:21: required from ‘scitbx::rotr3 scitbx::rigid_body::joint_lib::six_dof_aja_simplified(const scitbx::vec3&, const scitbx::af::const_ref&) [with FloatType = double]’ 361 | af::tiny qe(&q[0], &q[4]); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:24:49: required from here 24 | result = joint_lib::six_dof_aja_simplified(center_of_mass, q); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_matrix.h:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/spatial_lib.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/featherstone.h:683:31: required from ‘scitbx::af::shared > scitbx::rigid_body::featherstone::system_model::inverse_dynamics(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&) [with FloatType = double]’ 683 | tau_array[ib] = af::small(f[ib].begin(), f[ib].end()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/featherstone.h:705:21: required from ‘scitbx::af::shared scitbx::rigid_body::featherstone::system_model::inverse_dynamics_packed(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with FloatType = double]’ 705 | tau_array = inverse_dynamics( | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:120:46: required from here 120 | .def("inverse_dynamics_packed", &wt::inverse_dynamics_packed, ( | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/mat3.h:5: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h: In instantiation of ‘scitbx::af::shared > > scitbx::rigid_body::tardy::construct_bodies(const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const boost::python::api::object&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h:203:54: required from ‘scitbx::rigid_body::tardy::model::model(const boost::python::api::object&, const scitbx::af::shared >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, const ft&) [with FloatType = double; ft = double]’ 203 | featherstone::system_model(construct_bodies( | ~~~~~~~~~~~~~~~~^ 204 | sites_.const_ref(), | ~~~~~~~~~~~~~~~~~~~ 205 | masses_.const_ref(), | ~~~~~~~~~~~~~~~~~~~~ 206 | tardy_tree_.attr("cluster_manager"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 | near_singular_hinges_angular_tolerance_deg_)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = scitbx::rigid_body::tardy::model<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; PyObject = _object; t0 = const boost::python::api::object&; t1 = const scitbx::af::shared >&; t2 = const scitbx::af::shared&; t3 = const boost::python::api::object&; t4 = const boost::python::api::object&; t5 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; Arity = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:344:31: required from ‘static void boost::python::detail::define_class_init_helper::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, boost::python::detail::keyword_range) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; int NDefaults = 1; boost::python::detail::keyword_range = std::pair]’ 344 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedT = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional > >; classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedVisitor = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >; W = scitbx::rigid_body::tardy::model<>; X1 = boost::python::bases >; X2 = boost::noncopyable_::noncopyable; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:151:13: required from here 146 | class_ >, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | boost::noncopyable | ~~~~~~~~~~~~~~~~~~ 149 | >("tardy_model", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .enable_pickling() | ~~~~~~~~~~~~~~~~~~ 151 | .def(init< | ~~~~^~~~~~ 152 | object const&, | ~~~~~~~~~~~~~~ 153 | af::shared > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | af::shared const&, | ~~~~~~~~~~~~~~~~~~~~~~ 155 | object const&, | ~~~~~~~~~~~~~~ 156 | object const&, | ~~~~~~~~~~~~~~ 157 | optional >(( | ~~~~~~~~~~~~~~~~~~~~~~~ 158 | arg("labels"), | ~~~~~~~~~~~~~~ 159 | arg("sites"), | ~~~~~~~~~~~~~ 160 | arg("masses"), | ~~~~~~~~~~~~~~ 161 | arg("tardy_tree"), | ~~~~~~~~~~~~~~~~~~ 162 | arg("potential_obj"), | ~~~~~~~~~~~~~~~~~~~~~ 163 | arg("near_singular_hinges_angular_tolerance_deg")=5))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h:163:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 163 | SCITBX_ASSERT(body->parent < nc); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/tardy.h:163:9: note: in expansion of macro ‘SCITBX_ASSERT’ 163 | SCITBX_ASSERT(body->parent < nc); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 1]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:648:13: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::revolute::new_q(const scitbx::af::const_ref&) const [with FloatType = double]’ 648 | af::tiny(q.begin(), q.end()))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:643:5: required from here 643 | new_q( | ^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 12]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:45:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::rbda_eq_4_13(const scitbx::af::tiny&) [with FloatType = double]’ 45 | return af::tiny(coeffs, coeffs+4*3) * ft(0.5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:279:21: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::six_dof::time_step_position(const scitbx::af::const_ref&, const ft&) const [with FloatType = double; ft = double]’ 279 | rbda_eq_4_13(unit_quaternion), w_body_frame); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:271:5: required from here 271 | time_step_position( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 16]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:79:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::d_unit_quaternion_d_qe_matrix(const scitbx::af::tiny&) [with FloatType = double]’ 79 | return af::tiny(coeffs, coeffs+4*4) / n3; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:317:58: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 317 | af::tiny d = d_unit_quaternion_d_qe_matrix(qe); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:324:24: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 324 | af::small result(cn.begin(), cn.end()); | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/boost_python/sparse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/set_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_python313 -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_ext.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/15/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h:4: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = unsigned int; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_ext.cpp:9:32: required from here 9 | set_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/set_ext.cpp:10:35: required from here 10 | set_wrapper::wrap("stl_string"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' g++ -o scitbx/stl/vector_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/versa_matrix.h:4: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/array_as_list.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/rigid_body/ext.cpp:3: /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/15/bits/stl_uninitialized.h:526:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 526 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/suffixtree/boost_python/object_extensions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/shared_plain.h:307: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:64, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp:2: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp:10:35: required from here 10 | vector_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp:11:33: required from here 11 | vector_wrapper::wrap("double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/stl/vector_ext.cpp:14:50: required from here 14 | vector_wrapper, rir>::wrap("set_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/wigner/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/wigner/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/ab_initio/ab_initio_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o smtbx/array_family/af_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/array_family/af_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/constraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o smtbx/refinement/constraints/boost_python/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/boost_python/least_squares_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/boost_python/weighting_schemes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/boost_python/least_squares.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/restraints/boost_python/origin_fixing.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/restraints/boost_python/restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/structure_factors/direct/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.13 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_distl_spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.13 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/array_family/flex_distl_spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/boost_python/distltbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.13 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/distltbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o spotfinder/diffraction/geometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.13 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/diffraction/geometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/dxtbx_toolbox/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.13 -Ispotfinder/dxtbx_toolbox/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/src -Ispotfinder/dxtbx_toolbox/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/dxtbx_toolbox/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scaled_adp.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python313 -lm g++ -o spotfinder/core_toolbox/boost_python/hough_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/dxtbx/src -I/usr/include/python3.13 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/spotfinder/core_toolbox/boost_python/hough_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lboost_python313 -lm -lboost_timer Create symlinks for: 'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o mmtbx/masks/tst_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/mmtbx/masks/tst_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/usr/include/python3.13 /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_hough_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_hough_ext.so.0 spotfinder/core_toolbox/boost_python/hough_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so.0'->'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so'->'lib/spotfinder_hough_ext.so.0.0.1' g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_dxtbx_ext.so.0 spotfinder/dxtbx_toolbox/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -ldxtbxspotfinder -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so.0'->'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so'->'lib/spotfinder_dxtbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:15: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<1>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:127:11: required from here 127 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<4>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:145:11: required from here 145 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<2>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:172:11: required from here 172 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<3>]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:202:11: required from here 202 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:248:11: required from here 248 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:280:11: required from here 280 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:326:11: required from here 326 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_accessors.cpp:371:11: required from here 371 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/scoped_array.hpp:14, from /usr/include/boost/scoped_array.hpp:13, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/ref.h:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include/scitbx/array_family/tiny_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o mmtbx/masks/tst_mask -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread mmtbx/masks/tst_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small_plain]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::convertible(PyObject*) [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:156:78: required from here 156 | scitbx::boost_python::container_conversions::variable_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:621:46: required from here 621 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::convertible(PyObject*) [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:160:72: required from here 160 | scitbx::boost_python::container_conversions::linked_list_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:164:71: required from here 164 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::shared_plain]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:624:48: required from here 624 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:168:71: required from here 168 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:172:75: required from here 172 | scitbx::boost_python::container_conversions::fixed_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::shared]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:629:42: required from here 629 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_1() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:635:64: required from here 634 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 | af::versa_plain > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:637:58: required from here 636 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 | af::versa > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_2.cpp In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include/scitbx/array_family/small_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = int; long unsigned int N = 128]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:41:17: required from ‘static void {anonymous}::array_exercise::run_1() [with ArrayType = scitbx::af::small_plain]’ 41 | ArrayType a5(a4.begin(), a4.begin()); | ^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:28:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 28 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_accessors.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_4.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lboost_thread -lboost_python313 -lm g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_af_5.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_mat3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_distltbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_distltbx_ext.so.0 spotfinder/core_toolbox/boost_python/distltbx_ext.o spotfinder/diffraction/geometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python313 -lm -lboost_numpy313 Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_least_squares_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_least_squares_ext.so.0 smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python313 -lm Create symlinks for: 'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so.0'->'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so'->'lib/spotfinder_distltbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_ref_matrix_facet.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp: In function ‘int main()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 52 | for(int i=0; i'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' g++ -o scitbx/array_family/tst_sym_mat3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_sym_mat3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_5 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_5.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm g++ -o scitbx/array_family/tst_rectangular_full_packed -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_rectangular_full_packed.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_unsigned_float_arithmetic.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_vec3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/array_family/tst_vec3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_mat3 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm g++ -o scitbx/array_family/tst_optional_copy -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/error/tst_error.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/error -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error/tst_error.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/timing/fftpack_timer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_ref_matrix_facet -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_ref_matrix_facet.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/fftpack/timing/test0.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/timing/test0.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/error/tst_error -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/error/tst_error.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable scitbx/lbfgs/sdrive_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgs/tst_lbfgs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/timing/fftpack_timer.cpp:6: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/complex_to_complex_3d.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/timing/test0.cpp:3: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_vec3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/sdrive_fem.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_sym_mat3 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_sym_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/tst_lbfgs -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgs/tst_lbfgs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver1.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver2.cpp:102:19: required from here 102 | write_ref1(" ", x); | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver2.cpp:70:11: required from here 70 | setulb( | ~~~~~~^ 71 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm g++ -o scitbx/math/tests/tst.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/math/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/math/tests/tst.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver3.cpp:1: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver3.cpp:82:19: required from here 82 | write_ref1(" ", wa.get1(j+1,n)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/dev/driver3.cpp:72:11: required from here 72 | setulb( | ~~~~~~^ 73 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o lib/spotfinder_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_array_family_flex_ext.so.0 spotfinder/array_family/flex_ext.o spotfinder/array_family/flex_distl_spot.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python313 -lm g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/fftpack/timing/fftpack_timer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests/tst_cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/tests/tst -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/math/tests/tst.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests/tst_givens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/fftpack/timing/test0.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests/tst_householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so.0'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/matrix/tests/tst_svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/serialization -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/serialization /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/serialization/tst_base_256.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Iscitbx/sparse/tests -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/tests /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/scitbx/sparse/tests/tst_sparse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/lbfgsb/dev/driver3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/serialization/tst_base_256.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_givens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/smtbx/refinement/constraints/tests/tst_special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_cholesky.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_svd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/matrix/tests/tst_householder.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/sparse/tests/tst_sparse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_special_position.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-z,relro -L/usr/lib/loongarch64-linux-gnu/hdf5/serial -lhdf5 -std=c++14 -pthread scitbx/array_family/tst_af_4.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/lib -lm scons: done building targets. usr+sys time: 54.72 seconds wall clock time: 21 minutes 23.21 seconds (1283.21 seconds total) iconv -f ISO-8859-1 -t UTF-8 cctbx/eltbx/covalent_radii.h > covalent_radii.h mv covalent_radii.h cctbx/eltbx/covalent_radii.h dh_auto_build -- --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" pybuild --build -i python{version} -p "3.14 3.13" --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" --parallel=8 I: pybuild base:385: cp -f '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_/lib/*_ext.so '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_/scitbx/array_family/boost_python/regression_test_ext.so '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build' I: pybuild base:385: cp -f '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build'_/lib/*_ext.so '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build'_/scitbx/array_family/boost_python/regression_test_ext.so '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build' dh_auto_build -- --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" pybuild --build -i python{version} -p "3.14 3.13" --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" --parallel=8 I: pybuild base:385: cp -f '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_/lib/dxtbx_flumpy.so '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build' I: pybuild base:385: cp -f '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build'_/lib/dxtbx_flumpy.so '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build' make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' # DOES NOT WORK, source code must be modified in order to find the expected # /usr/share/cctbx libtbx_env file during the build process make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars rm -fr -- debian/.debhelper/generated/libcctbx0/ debian/libcctbx0/ debian/tmp/ debian/.debhelper/generated/libcctbx-dev/ debian/libcctbx-dev/ debian/.debhelper/generated/python3-cctbx/ debian/python3-cctbx/ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' # Python modules dh_auto_install -- --name cctbx install -m0755 -d /build/reproducible-path/cctbx-2026.4\+ds2\+\~3.28.0\+ds1/debian/tmp pybuild --install -i python{version} -p "3.14 3.13" --name cctbx --parallel=8 I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir I: pybuild plugin_pyproject:199: Copying package built for python3.13 to destdir dh_auto_install --sourcedirectory=dxtbx -- --name dxtbx install -m0755 -d /build/reproducible-path/cctbx-2026.4\+ds2\+\~3.28.0\+ds1/debian/tmp pybuild --install -i python{version} -p "3.14 3.13" --name dxtbx --dir dxtbx --parallel=8 I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir I: pybuild plugin_pyproject:199: Copying package built for python3.13 to destdir # pybuild does not set properly dest-dir when name is set. So merge both installation under debian/tmp install -d debian/tmp rsync -av --ignore-existing debian/python3-cctbx/ debian/python3-dxtbx/ debian/tmp sending incremental file list ./ usr/ usr/bin/ usr/bin/cxi.image2pickle usr/bin/cxi.image_average usr/bin/dev.dxtbx.debug_memory usr/bin/dev.dxtbx.read_sequence usr/bin/dxtbx.any2nexus usr/bin/dxtbx.depends_on usr/bin/dxtbx.detector_superpose usr/bin/dxtbx.display_parallax_correction usr/bin/dxtbx.dlsnxs2cbf usr/bin/dxtbx.image2pickle usr/bin/dxtbx.image_average usr/bin/dxtbx.install_format usr/bin/dxtbx.overload usr/bin/dxtbx.plot_detector_models usr/bin/dxtbx.print_header usr/bin/dxtbx.print_matching_images usr/bin/dxtbx.radial_average usr/bin/dxtbx.saturation usr/bin/dxtbx.show_mask_info usr/bin/dxtbx.show_matching_formats usr/bin/dxtbx.show_registry usr/lib/ usr/lib/python3.13/ usr/lib/python3.13/dist-packages/ usr/lib/python3.13/dist-packages/annlib_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_boost_thread_test_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_graph_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_graph_maximum_clique_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_graph_metric_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_graph_utility_ext.so usr/lib/python3.13/dist-packages/boost_adaptbx_python_streambuf_test_ext.so usr/lib/python3.13/dist-packages/boost_optional_ext.so usr/lib/python3.13/dist-packages/boost_python_hybrid_times_ext.so usr/lib/python3.13/dist-packages/boost_python_meta_ext.so usr/lib/python3.13/dist-packages/boost_rational_ext.so usr/lib/python3.13/dist-packages/boost_tuple_ext.so usr/lib/python3.13/dist-packages/cbflib_ext.so usr/lib/python3.13/dist-packages/ccp4io_adaptbx_ext.so usr/lib/python3.13/dist-packages/cctbx_adp_restraints_ext.so usr/lib/python3.13/dist-packages/cctbx_adptbx_ext.so usr/lib/python3.13/dist-packages/cctbx_anharmonic_ext.so usr/lib/python3.13/dist-packages/cctbx_array_family_flex_ext.so usr/lib/python3.13/dist-packages/cctbx_asymmetric_map_ext.so usr/lib/python3.13/dist-packages/cctbx_covariance_ext.so usr/lib/python3.13/dist-packages/cctbx_crystal_ext.so usr/lib/python3.13/dist-packages/cctbx_dmtbx_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_chemical_elements_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_covalent_radii_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_fp_fdp_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_henke_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_icsd_radii_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_neutron_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_sasaki_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_tiny_pse_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_wavelengths_ext.so usr/lib/python3.13/dist-packages/cctbx_eltbx_xray_scattering_ext.so usr/lib/python3.13/dist-packages/cctbx_emma_ext.so usr/lib/python3.13/dist-packages/cctbx_french_wilson_ext.so usr/lib/python3.13/dist-packages/cctbx_geometry_ext.so usr/lib/python3.13/dist-packages/cctbx_geometry_restraints_ext.so usr/lib/python3.13/dist-packages/cctbx_maptbx_bcr_bcr_ext.so usr/lib/python3.13/dist-packages/cctbx_maptbx_ext.so usr/lib/python3.13/dist-packages/cctbx_masks_ext.so usr/lib/python3.13/dist-packages/cctbx_math_ext.so usr/lib/python3.13/dist-packages/cctbx_merging_ext.so usr/lib/python3.13/dist-packages/cctbx_miller_ext.so usr/lib/python3.13/dist-packages/cctbx_multipolar_ext.so usr/lib/python3.13/dist-packages/cctbx_orientation_ext.so usr/lib/python3.13/dist-packages/cctbx_sgtbx_asu_ext.so usr/lib/python3.13/dist-packages/cctbx_sgtbx_ext.so usr/lib/python3.13/dist-packages/cctbx_statistics_ext.so usr/lib/python3.13/dist-packages/cctbx_symmetry_search_ext.so usr/lib/python3.13/dist-packages/cctbx_translation_search_ext.so usr/lib/python3.13/dist-packages/cctbx_uctbx_ext.so usr/lib/python3.13/dist-packages/cctbx_xray_ext.so usr/lib/python3.13/dist-packages/cctbx_xray_observations_ext.so usr/lib/python3.13/dist-packages/cma_es_ext.so usr/lib/python3.13/dist-packages/determine_unit_cell_ext.so usr/lib/python3.13/dist-packages/dxtbx_ext.so usr/lib/python3.13/dist-packages/dxtbx_flumpy.so usr/lib/python3.13/dist-packages/dxtbx_format_image_ext.so usr/lib/python3.13/dist-packages/dxtbx_format_nexus_ext.so usr/lib/python3.13/dist-packages/dxtbx_imageset_ext.so usr/lib/python3.13/dist-packages/dxtbx_masking_ext.so usr/lib/python3.13/dist-packages/dxtbx_model_ext.so usr/lib/python3.13/dist-packages/fable_ext.so usr/lib/python3.13/dist-packages/gltbx_fonts_ext.so usr/lib/python3.13/dist-packages/gltbx_gl_ext.so usr/lib/python3.13/dist-packages/gltbx_glu_ext.so usr/lib/python3.13/dist-packages/gltbx_quadrics_ext.so usr/lib/python3.13/dist-packages/gltbx_util_ext.so usr/lib/python3.13/dist-packages/gltbx_viewer_utils_ext.so usr/lib/python3.13/dist-packages/iotbx_ccp4_map_ext.so usr/lib/python3.13/dist-packages/iotbx_cif_ext.so usr/lib/python3.13/dist-packages/iotbx_detectors_bruker_ext.so usr/lib/python3.13/dist-packages/iotbx_detectors_ext.so usr/lib/python3.13/dist-packages/iotbx_dsn6_map_ext.so usr/lib/python3.13/dist-packages/iotbx_dtrek_ext.so usr/lib/python3.13/dist-packages/iotbx_mtz_ext.so usr/lib/python3.13/dist-packages/iotbx_pdb_ext.so usr/lib/python3.13/dist-packages/iotbx_pdb_hierarchy_ext.so usr/lib/python3.13/dist-packages/iotbx_scalepack_ext.so usr/lib/python3.13/dist-packages/iotbx_shelx_ext.so usr/lib/python3.13/dist-packages/iotbx_wildcard_ext.so usr/lib/python3.13/dist-packages/iotbx_xplor_ext.so usr/lib/python3.13/dist-packages/mmtbx_alignment_ext.so usr/lib/python3.13/dist-packages/mmtbx_building_loop_closure_ext.so usr/lib/python3.13/dist-packages/mmtbx_bulk_solvent_ext.so usr/lib/python3.13/dist-packages/mmtbx_den_restraints_ext.so usr/lib/python3.13/dist-packages/mmtbx_dssp_ext.so usr/lib/python3.13/dist-packages/mmtbx_dynamics_ext.so usr/lib/python3.13/dist-packages/mmtbx_f_model_ext.so usr/lib/python3.13/dist-packages/mmtbx_geometry_asa_ext.so usr/lib/python3.13/dist-packages/mmtbx_geometry_clash_ext.so usr/lib/python3.13/dist-packages/mmtbx_geometry_indexing_ext.so usr/lib/python3.13/dist-packages/mmtbx_geometry_primitive_ext.so usr/lib/python3.13/dist-packages/mmtbx_geometry_shared_types_ext.so usr/lib/python3.13/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.so usr/lib/python3.13/dist-packages/mmtbx_hydrogens_ext.so usr/lib/python3.13/dist-packages/mmtbx_masks_ext.so usr/lib/python3.13/dist-packages/mmtbx_max_lik_ext.so usr/lib/python3.13/dist-packages/mmtbx_mosaic_ext.so usr/lib/python3.13/dist-packages/mmtbx_ncs_cartesian_restraints_ext.so usr/lib/python3.13/dist-packages/mmtbx_ncs_ext.so usr/lib/python3.13/dist-packages/mmtbx_pair_interaction_ext.so usr/lib/python3.13/dist-packages/mmtbx_probe_ext.so usr/lib/python3.13/dist-packages/mmtbx_ramachandran_restraints_ext.so usr/lib/python3.13/dist-packages/mmtbx_reduce_ext.so usr/lib/python3.13/dist-packages/mmtbx_reference_coordinate_ext.so usr/lib/python3.13/dist-packages/mmtbx_rotamer_fit_ext.so usr/lib/python3.13/dist-packages/mmtbx_rsr_ext.so usr/lib/python3.13/dist-packages/mmtbx_scaling_ext.so usr/lib/python3.13/dist-packages/mmtbx_secondary_structure_ext.so usr/lib/python3.13/dist-packages/mmtbx_tls_decompose_ext.so usr/lib/python3.13/dist-packages/mmtbx_tls_ext.so usr/lib/python3.13/dist-packages/mmtbx_tls_optimise_amplitudes_ext.so usr/lib/python3.13/dist-packages/mmtbx_tls_utils_ext.so usr/lib/python3.13/dist-packages/mmtbx_utils_ext.so usr/lib/python3.13/dist-packages/mmtbx_validation_ramachandran_ext.so usr/lib/python3.13/dist-packages/omptbx_ext.so usr/lib/python3.13/dist-packages/regression_test_ext.so usr/lib/python3.13/dist-packages/rstbx_array_family_flex_ext.so usr/lib/python3.13/dist-packages/rstbx_bandpass_ext.so usr/lib/python3.13/dist-packages/rstbx_bpcx_detector_model_ext.so usr/lib/python3.13/dist-packages/rstbx_diffraction_fastbragg_ext.so usr/lib/python3.13/dist-packages/rstbx_ext.so usr/lib/python3.13/dist-packages/rstbx_indexing_api_ext.so usr/lib/python3.13/dist-packages/rstbx_integration_ext.so usr/lib/python3.13/dist-packages/rstbx_simage_ext.so usr/lib/python3.13/dist-packages/rstbx_simulation_ext.so usr/lib/python3.13/dist-packages/rstbx_symmetry_constraints_ext.so usr/lib/python3.13/dist-packages/scitbx_array_family_flex_ext.so usr/lib/python3.13/dist-packages/scitbx_array_family_shared_ext.so usr/lib/python3.13/dist-packages/scitbx_cubicle_neighbors_ext.so usr/lib/python3.13/dist-packages/scitbx_fftpack_ext.so usr/lib/python3.13/dist-packages/scitbx_glmtbx_ext.so usr/lib/python3.13/dist-packages/scitbx_graphics_utils_ext.so usr/lib/python3.13/dist-packages/scitbx_iso_surface_ext.so usr/lib/python3.13/dist-packages/scitbx_lbfgs_ext.so usr/lib/python3.13/dist-packages/scitbx_lbfgsb_ext.so usr/lib/python3.13/dist-packages/scitbx_linalg_ext.so usr/lib/python3.13/dist-packages/scitbx_lstbx_normal_equations_ext.so usr/lib/python3.13/dist-packages/scitbx_math_ext.so usr/lib/python3.13/dist-packages/scitbx_minpack_ext.so usr/lib/python3.13/dist-packages/scitbx_r3_utils_ext.so usr/lib/python3.13/dist-packages/scitbx_random_ext.so usr/lib/python3.13/dist-packages/scitbx_rigid_body_ext.so usr/lib/python3.13/dist-packages/scitbx_sparse_ext.so usr/lib/python3.13/dist-packages/scitbx_stl_map_ext.so usr/lib/python3.13/dist-packages/scitbx_stl_set_ext.so usr/lib/python3.13/dist-packages/scitbx_stl_vector_ext.so usr/lib/python3.13/dist-packages/scitbx_suffixtree_shared_ext.so usr/lib/python3.13/dist-packages/scitbx_suffixtree_single_ext.so usr/lib/python3.13/dist-packages/scitbx_wigner_ext.so usr/lib/python3.13/dist-packages/smtbx_ab_initio_ext.so usr/lib/python3.13/dist-packages/smtbx_array_family_ext.so usr/lib/python3.13/dist-packages/smtbx_refinement_constraints_ext.so usr/lib/python3.13/dist-packages/smtbx_refinement_least_squares_ext.so usr/lib/python3.13/dist-packages/smtbx_refinement_restraints_ext.so usr/lib/python3.13/dist-packages/smtbx_stl_map_ext.so usr/lib/python3.13/dist-packages/smtbx_structure_factors_direct_ext.so usr/lib/python3.13/dist-packages/spotfinder_array_family_flex_ext.so usr/lib/python3.13/dist-packages/spotfinder_distltbx_ext.so usr/lib/python3.13/dist-packages/spotfinder_dxtbx_ext.so usr/lib/python3.13/dist-packages/spotfinder_hough_ext.so usr/lib/python3.13/dist-packages/std_pair_ext.so usr/lib/python3.13/dist-packages/annlib_adaptbx/ usr/lib/python3.13/dist-packages/annlib_adaptbx/__init__.py usr/lib/python3.13/dist-packages/annlib_adaptbx/run_tests.py usr/lib/python3.13/dist-packages/annlib_adaptbx/annlib_adaptbx/ usr/lib/python3.13/dist-packages/annlib_adaptbx/annlib_adaptbx/__init__.py usr/lib/python3.13/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py usr/lib/python3.13/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py usr/lib/python3.13/dist-packages/annlib_adaptbx/source_generators/ usr/lib/python3.13/dist-packages/annlib_adaptbx/source_generators/__init__.py usr/lib/python3.13/dist-packages/annlib_adaptbx/source_generators/generate_all.py usr/lib/python3.13/dist-packages/boost/ usr/lib/python3.13/dist-packages/boost/__init__.py usr/lib/python3.13/dist-packages/boost/optional.py usr/lib/python3.13/dist-packages/boost/python.py usr/lib/python3.13/dist-packages/boost/rational.py usr/lib/python3.13/dist-packages/boost/std_pair.py usr/lib/python3.13/dist-packages/boost/tuple.py usr/lib/python3.13/dist-packages/boost_adaptbx/ usr/lib/python3.13/dist-packages/boost_adaptbx/__init__.py usr/lib/python3.13/dist-packages/boost_adaptbx/hybrid_times.py usr/lib/python3.13/dist-packages/boost_adaptbx/libtbx_refresh.py usr/lib/python3.13/dist-packages/boost_adaptbx/run_tests.py usr/lib/python3.13/dist-packages/boost_adaptbx/boost/ usr/lib/python3.13/dist-packages/boost_adaptbx/boost/__init__.py usr/lib/python3.13/dist-packages/boost_adaptbx/boost/optional.py usr/lib/python3.13/dist-packages/boost_adaptbx/boost/python.py usr/lib/python3.13/dist-packages/boost_adaptbx/boost/rational.py usr/lib/python3.13/dist-packages/boost_adaptbx/boost/std_pair.py usr/lib/python3.13/dist-packages/boost_adaptbx/boost/tuple.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/ usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/__init__.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/divide_by_zero.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/double_overflow.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/gcd.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/inexact.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/int_overflow.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/lcm.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/segmentation_fault.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/show_environ_usage.py usr/lib/python3.13/dist-packages/boost_adaptbx/command_line/show_platform_info.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/ usr/lib/python3.13/dist-packages/boost_adaptbx/graph/__init__.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/breadth_first_search.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/clustering_algorithm.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/connected_component_algorithm.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/graph_structure_comparison.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/maximum_clique.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/metric.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/min_cut_max_flow.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/minimum_cut_enumerate.py usr/lib/python3.13/dist-packages/boost_adaptbx/graph/utility.py usr/lib/python3.13/dist-packages/cbflib_adaptbx/ usr/lib/python3.13/dist-packages/cbflib_adaptbx/__init__.py usr/lib/python3.13/dist-packages/cbflib_adaptbx/copy_files.py usr/lib/python3.13/dist-packages/cbflib_adaptbx/exercise_compression.py usr/lib/python3.13/dist-packages/cbflib_adaptbx/run_tests.py usr/lib/python3.13/dist-packages/cbflib_adaptbx/command_line/ usr/lib/python3.13/dist-packages/cbflib_adaptbx/command_line/__init__.py usr/lib/python3.13/dist-packages/cbflib_adaptbx/command_line/dump.py usr/lib/python3.13/dist-packages/ccp4io_adaptbx/ usr/lib/python3.13/dist-packages/ccp4io_adaptbx/__init__.py usr/lib/python3.13/dist-packages/ccp4io_adaptbx/copy_files.py usr/lib/python3.13/dist-packages/ccp4io_adaptbx/tst.py usr/lib/python3.13/dist-packages/cctbx-2023.12.dist-info/ usr/lib/python3.13/dist-packages/cctbx-2023.12.dist-info/METADATA usr/lib/python3.13/dist-packages/cctbx-2023.12.dist-info/RECORD usr/lib/python3.13/dist-packages/cctbx-2023.12.dist-info/WHEEL usr/lib/python3.13/dist-packages/cctbx-2023.12.dist-info/top_level.txt usr/lib/python3.13/dist-packages/cctbx-2023.12.dist-info/licenses/ usr/lib/python3.13/dist-packages/cctbx-2023.12.dist-info/licenses/LICENSE.txt usr/lib/python3.13/dist-packages/cctbx/ usr/lib/python3.13/dist-packages/cctbx/__init__.py usr/lib/python3.13/dist-packages/cctbx/adptbx.py usr/lib/python3.13/dist-packages/cctbx/anharmonic.py usr/lib/python3.13/dist-packages/cctbx/crystal_orientation.py usr/lib/python3.13/dist-packages/cctbx/dmtbx.py usr/lib/python3.13/dist-packages/cctbx/euclidean_model_matching.py usr/lib/python3.13/dist-packages/cctbx/french_wilson.py usr/lib/python3.13/dist-packages/cctbx/libtbx_refresh.py usr/lib/python3.13/dist-packages/cctbx/math_module.py usr/lib/python3.13/dist-packages/cctbx/multipolar.py usr/lib/python3.13/dist-packages/cctbx/r_free_utils.py usr/lib/python3.13/dist-packages/cctbx/run_examples.py usr/lib/python3.13/dist-packages/cctbx/run_tests.py usr/lib/python3.13/dist-packages/cctbx/statistics.py usr/lib/python3.13/dist-packages/cctbx/symmetry_search.py usr/lib/python3.13/dist-packages/cctbx/translation_search.py usr/lib/python3.13/dist-packages/cctbx/adp_restraints/ usr/lib/python3.13/dist-packages/cctbx/adp_restraints/__init__.py usr/lib/python3.13/dist-packages/cctbx/adp_restraints/energies.py usr/lib/python3.13/dist-packages/cctbx/adp_restraints/flags.py usr/lib/python3.13/dist-packages/cctbx/adp_restraints/tst_ext.py usr/lib/python3.13/dist-packages/cctbx/array_family/ usr/lib/python3.13/dist-packages/cctbx/array_family/__init__.py usr/lib/python3.13/dist-packages/cctbx/array_family/flex.py usr/lib/python3.13/dist-packages/cctbx/command_line/ usr/lib/python3.13/dist-packages/cctbx/command_line/__init__.py usr/lib/python3.13/dist-packages/cctbx/command_line/auto_sharpen.py usr/lib/python3.13/dist-packages/cctbx/command_line/brehm_diederichs.py usr/lib/python3.13/dist-packages/cctbx/command_line/cctbx_test_nightly.py usr/lib/python3.13/dist-packages/cctbx/command_line/cod_select_and_pickle.py usr/lib/python3.13/dist-packages/cctbx/command_line/diffuse.py usr/lib/python3.13/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py usr/lib/python3.13/dist-packages/cctbx/command_line/euclidean_model_matching.py usr/lib/python3.13/dist-packages/cctbx/command_line/find_reticular_twin_laws.py usr/lib/python3.13/dist-packages/cctbx/command_line/form_factor_query.py usr/lib/python3.13/dist-packages/cctbx/command_line/precession_view.py usr/lib/python3.13/dist-packages/cctbx/command_line/qscore.py usr/lib/python3.13/dist-packages/cctbx/command_line/samosa_join.py usr/lib/python3.13/dist-packages/cctbx/command_line/samosa_scale.py usr/lib/python3.13/dist-packages/cctbx/command_line/segment_and_split_map.py usr/lib/python3.13/dist-packages/cctbx/command_line/space_group_info.py usr/lib/python3.13/dist-packages/cctbx/command_line/structure_factor_timings.py usr/lib/python3.13/dist-packages/cctbx/command_line/subgroups.py usr/lib/python3.13/dist-packages/cctbx/command_line/version.py usr/lib/python3.13/dist-packages/cctbx/command_line/wavelength_units.py usr/lib/python3.13/dist-packages/cctbx/covariance/ usr/lib/python3.13/dist-packages/cctbx/covariance/__init__.py usr/lib/python3.13/dist-packages/cctbx/crystal/ usr/lib/python3.13/dist-packages/cctbx/crystal/__init__.py usr/lib/python3.13/dist-packages/cctbx/crystal/burzlaff_zimmermann_dewolff.py usr/lib/python3.13/dist-packages/cctbx/crystal/close_packing.py usr/lib/python3.13/dist-packages/cctbx/crystal/coordination_sequences.py usr/lib/python3.13/dist-packages/cctbx/crystal/direct_space_asu.py usr/lib/python3.13/dist-packages/cctbx/crystal/distance_based_connectivity.py usr/lib/python3.13/dist-packages/cctbx/crystal/find_best_cell.py usr/lib/python3.13/dist-packages/cctbx/crystal/reindex.py usr/lib/python3.13/dist-packages/cctbx/crystal/super_cell.py usr/lib/python3.13/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py usr/lib/python3.13/dist-packages/cctbx/crystal/tst_ext.py usr/lib/python3.13/dist-packages/cctbx/crystal/tst_super_cell.py usr/lib/python3.13/dist-packages/cctbx/development/ usr/lib/python3.13/dist-packages/cctbx/development/__init__.py usr/lib/python3.13/dist-packages/cctbx/development/approx_amplitude_vs_resolution.py usr/lib/python3.13/dist-packages/cctbx/development/cns_density_modification.py usr/lib/python3.13/dist-packages/cctbx/development/create_models_or_maps.py usr/lib/python3.13/dist-packages/cctbx/development/debug_utils.py usr/lib/python3.13/dist-packages/cctbx/development/direct_or_fft.py usr/lib/python3.13/dist-packages/cctbx/development/electron_density_sampling.py usr/lib/python3.13/dist-packages/cctbx/development/fmt_utils.py usr/lib/python3.13/dist-packages/cctbx/development/github.py usr/lib/python3.13/dist-packages/cctbx/development/make_cns_input.py usr/lib/python3.13/dist-packages/cctbx/development/make_settings.py usr/lib/python3.13/dist-packages/cctbx/development/random_structure.py usr/lib/python3.13/dist-packages/cctbx/development/run_shelx.py usr/lib/python3.13/dist-packages/cctbx/development/run_shelx76.py usr/lib/python3.13/dist-packages/cctbx/development/space_group_option_parser.py usr/lib/python3.13/dist-packages/cctbx/development/structure_factor_utils.py usr/lib/python3.13/dist-packages/cctbx/development/tst_cns_epsilon.py usr/lib/python3.13/dist-packages/cctbx/development/tst_cns_hl.py usr/lib/python3.13/dist-packages/cctbx/eltbx/ usr/lib/python3.13/dist-packages/cctbx/eltbx/__init__.py usr/lib/python3.13/dist-packages/cctbx/eltbx/attenuation_coefficient.py usr/lib/python3.13/dist-packages/cctbx/eltbx/chemical_elements.py usr/lib/python3.13/dist-packages/cctbx/eltbx/covalent_radii.py usr/lib/python3.13/dist-packages/cctbx/eltbx/distance_based_connectivity.py usr/lib/python3.13/dist-packages/cctbx/eltbx/e_scattering.py usr/lib/python3.13/dist-packages/cctbx/eltbx/formula.py usr/lib/python3.13/dist-packages/cctbx/eltbx/fp_fdp.py usr/lib/python3.13/dist-packages/cctbx/eltbx/gaussian_fit.py usr/lib/python3.13/dist-packages/cctbx/eltbx/henke.py usr/lib/python3.13/dist-packages/cctbx/eltbx/icsd_radii.py usr/lib/python3.13/dist-packages/cctbx/eltbx/neutron.py usr/lib/python3.13/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py usr/lib/python3.13/dist-packages/cctbx/eltbx/sasaki.py usr/lib/python3.13/dist-packages/cctbx/eltbx/tiny_pse.py usr/lib/python3.13/dist-packages/cctbx/eltbx/van_der_waals_radii.py usr/lib/python3.13/dist-packages/cctbx/eltbx/wavelengths.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/ usr/lib/python3.13/dist-packages/cctbx/eltbx/development/__init__.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/combine_fits.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/e_scattering_plots.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/format_gaussian_fits.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/hydrogen_plots.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/itvc_approx.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/itvc_cross_validation.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/itvc_fits.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/itvc_kissel.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/itvc_section61_io.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/kissel_fits.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/kissel_io.py usr/lib/python3.13/dist-packages/cctbx/eltbx/development/rez_rez_grant.py usr/lib/python3.13/dist-packages/cctbx/eltbx/xray_scattering/ usr/lib/python3.13/dist-packages/cctbx/eltbx/xray_scattering/__init__.py usr/lib/python3.13/dist-packages/cctbx/examples/ usr/lib/python3.13/dist-packages/cctbx/examples/__init__.py usr/lib/python3.13/dist-packages/cctbx/examples/adp_symmetry_constraints.py usr/lib/python3.13/dist-packages/cctbx/examples/all_axes.py usr/lib/python3.13/dist-packages/cctbx/examples/analyze_adp.py usr/lib/python3.13/dist-packages/cctbx/examples/ccp4_map.py usr/lib/python3.13/dist-packages/cctbx/examples/change_hand_p31.py usr/lib/python3.13/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py usr/lib/python3.13/dist-packages/cctbx/examples/cr2o3_consistency_checks.py usr/lib/python3.13/dist-packages/cctbx/examples/cr2o3_primitive_cell.py usr/lib/python3.13/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/f_model_example.py usr/lib/python3.13/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py usr/lib/python3.13/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py usr/lib/python3.13/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py usr/lib/python3.13/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/getting_started.py usr/lib/python3.13/dist-packages/cctbx/examples/hirshfeld_test.py usr/lib/python3.13/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py usr/lib/python3.13/dist-packages/cctbx/examples/lebedev_2005_perturbation.py usr/lib/python3.13/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py usr/lib/python3.13/dist-packages/cctbx/examples/location_part.py usr/lib/python3.13/dist-packages/cctbx/examples/map_skewness.py usr/lib/python3.13/dist-packages/cctbx/examples/maximum_subgroups.py usr/lib/python3.13/dist-packages/cctbx/examples/miller_common_sets.py usr/lib/python3.13/dist-packages/cctbx/examples/miller_transform.py usr/lib/python3.13/dist-packages/cctbx/examples/neutron_structure_factors.py usr/lib/python3.13/dist-packages/cctbx/examples/phase_o_phrenia.py usr/lib/python3.13/dist-packages/cctbx/examples/quartz_structure.py usr/lib/python3.13/dist-packages/cctbx/examples/random_f_calc.py usr/lib/python3.13/dist-packages/cctbx/examples/random_puckers.py usr/lib/python3.13/dist-packages/cctbx/examples/reduced_cell_two_folds.py usr/lib/python3.13/dist-packages/cctbx/examples/site_symmetry_constraints.py usr/lib/python3.13/dist-packages/cctbx/examples/site_symmetry_table.py usr/lib/python3.13/dist-packages/cctbx/examples/space_group_matrices.py usr/lib/python3.13/dist-packages/cctbx/examples/space_subgroups.py usr/lib/python3.13/dist-packages/cctbx/examples/steve_collins.py usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_derivatives_2.py usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_derivatives_3.py usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_derivatives_4.py usr/lib/python3.13/dist-packages/cctbx/examples/sub_group_graph.py usr/lib/python3.13/dist-packages/cctbx/examples/symops_530.py usr/lib/python3.13/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py usr/lib/python3.13/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/tst_phase_o_phrenia.py usr/lib/python3.13/dist-packages/cctbx/examples/tst_space_subgroups.py usr/lib/python3.13/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py usr/lib/python3.13/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py usr/lib/python3.13/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py usr/lib/python3.13/dist-packages/cctbx/examples/unit_cell_minimizers.py usr/lib/python3.13/dist-packages/cctbx/examples/unit_cell_refinement.py usr/lib/python3.13/dist-packages/cctbx/examples/view_fft_map.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/ usr/lib/python3.13/dist-packages/cctbx/examples/merging/__init__.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/data_subset.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/data_utilities.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/show_results.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/sigma_correction.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/task4.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/test1.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/test_cc_half.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/tst_permutations.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/samosa/ usr/lib/python3.13/dist-packages/cctbx/examples/merging/samosa/__init__.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/samosa/join.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py usr/lib/python3.13/dist-packages/cctbx/examples/merging/samosa/scale.py usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_calculus/ usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py usr/lib/python3.13/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py usr/lib/python3.13/dist-packages/cctbx/geometry/ usr/lib/python3.13/dist-packages/cctbx/geometry/__init__.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/ usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/__init__.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/auto_linking_types.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/base_geometry.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/distance_least_squares.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/energies.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/flags.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/lbfgs.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/linking_class.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/manager.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/standard_cif_links.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/tst_ext.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/tst_motif.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py usr/lib/python3.13/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py usr/lib/python3.13/dist-packages/cctbx/macro_mol/ usr/lib/python3.13/dist-packages/cctbx/macro_mol/__init__.py usr/lib/python3.13/dist-packages/cctbx/macro_mol/rotation_parameters.py usr/lib/python3.13/dist-packages/cctbx/maptbx/ usr/lib/python3.13/dist-packages/cctbx/maptbx/__init__.py usr/lib/python3.13/dist-packages/cctbx/maptbx/auto_sharpen.py usr/lib/python3.13/dist-packages/cctbx/maptbx/box.py usr/lib/python3.13/dist-packages/cctbx/maptbx/fsc_curve.py usr/lib/python3.13/dist-packages/cctbx/maptbx/map_symmetry.py usr/lib/python3.13/dist-packages/cctbx/maptbx/mask.py usr/lib/python3.13/dist-packages/cctbx/maptbx/mem.py usr/lib/python3.13/dist-packages/cctbx/maptbx/minimization.py usr/lib/python3.13/dist-packages/cctbx/maptbx/prepare_map_for_docking.py usr/lib/python3.13/dist-packages/cctbx/maptbx/prepare_map_for_refinement.py usr/lib/python3.13/dist-packages/cctbx/maptbx/qscore.py usr/lib/python3.13/dist-packages/cctbx/maptbx/real_space_refinement_simple.py usr/lib/python3.13/dist-packages/cctbx/maptbx/refine_scales_errors.py usr/lib/python3.13/dist-packages/cctbx/maptbx/refine_sharpening.py usr/lib/python3.13/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py usr/lib/python3.13/dist-packages/cctbx/maptbx/segment_and_split_map.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_asymmetric_map.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_atom_curves.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_bcr.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_ccp.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_interpolation.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_interpolation_2.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_loft.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_mask.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_qscore.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py usr/lib/python3.13/dist-packages/cctbx/maptbx/tst_target_and_gradients.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/ usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/__init__.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/bcr.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/compute_tables.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/qmap.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/tst_adp_refine.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/tst_example.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/tst_qmap_02.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/tst_table.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/tst_two_atoms.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/tst_vrm.py usr/lib/python3.13/dist-packages/cctbx/maptbx/bcr/tst_vrm2.py usr/lib/python3.13/dist-packages/cctbx/masks/ usr/lib/python3.13/dist-packages/cctbx/masks/__init__.py usr/lib/python3.13/dist-packages/cctbx/merging/ usr/lib/python3.13/dist-packages/cctbx/merging/__init__.py usr/lib/python3.13/dist-packages/cctbx/merging/brehm_diederichs.py usr/lib/python3.13/dist-packages/cctbx/miller/ usr/lib/python3.13/dist-packages/cctbx/miller/__init__.py usr/lib/python3.13/dist-packages/cctbx/miller/display.py usr/lib/python3.13/dist-packages/cctbx/miller/reindexing.py usr/lib/python3.13/dist-packages/cctbx/miller/tst_map_to_asu_isym.py usr/lib/python3.13/dist-packages/cctbx/miller/tst_reindexing.py usr/lib/python3.13/dist-packages/cctbx/neutron/ usr/lib/python3.13/dist-packages/cctbx/neutron/__init__.py usr/lib/python3.13/dist-packages/cctbx/omz/ usr/lib/python3.13/dist-packages/cctbx/omz/__init__.py usr/lib/python3.13/dist-packages/cctbx/omz/bfgs.py usr/lib/python3.13/dist-packages/cctbx/omz/cif_refine.py usr/lib/python3.13/dist-packages/cctbx/omz/cod_refine.py usr/lib/python3.13/dist-packages/cctbx/omz/cod_select_and_pickle.py usr/lib/python3.13/dist-packages/cctbx/omz/dev.py usr/lib/python3.13/dist-packages/cctbx/omz/eval_iso_vs_refined.py usr/lib/python3.13/dist-packages/cctbx/omz/pdb_dev.py usr/lib/python3.13/dist-packages/cctbx/omz/tardy_adaptor.py usr/lib/python3.13/dist-packages/cctbx/omz/tst_bfgs.py usr/lib/python3.13/dist-packages/cctbx/omz/tst_dev.py usr/lib/python3.13/dist-packages/cctbx/regression/ usr/lib/python3.13/dist-packages/cctbx/regression/__init__.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_adp_constraints.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_amplitude_normalisation.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_change_basis.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_connectivity.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_connectivity_allsym.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_coordination_sequences.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_create_models_or_maps.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_crystal.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_crystal_close_packing.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_diffuse.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_direct_scaling.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_direct_space_asu.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_emma.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_expand_to_p1.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_f_model.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_fast_nv1995.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_find_best_cell.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_french_wilson.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_geometry_restraints.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_geometry_restraints_2.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_grm_modifications.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_grm_modifications_rm.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_grm_pickling.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_grouped_data.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_krivy_gruber.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_loc_res.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_map_is_periodic.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_maptbx_box.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_maptbx_mask.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_math_module.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_mem.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_mem_2.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_miller.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_miller_data_manipulation.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_miller_fft_map.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_miller_lookup_utils.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_miller_statistics.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_niggli_reduction_cpp.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_pair_asu_table.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_pointgroup_tools.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_r_free_utils.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_refine_xray_curvs.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_reflection_statistics.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sampled_model_density.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sgtbx.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sgtbx_denominators.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sgtbx_harker.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_show_cosets.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_sphericity.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_statistics_graphs.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_triplet_generator.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_twin_target.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_wavelength_units.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_web_change_basis.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_weighting_schemes.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_wilson_plot.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_xray.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_xray_derivatives.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_xray_fast_gradients.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_xray_minimization.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_xray_minimization_failure.py usr/lib/python3.13/dist-packages/cctbx/regression/tst_xray_target_functors.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/ usr/lib/python3.13/dist-packages/cctbx/sgtbx/__init__.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/bravais_types.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/cosets.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/harker.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/lattice_symmetry.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/literal_description.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/plane_groups.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/pointgroup_tools.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/reticular_pg_tools.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/reticular_twin_laws.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/show_cosets.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/sub_lattice_tools.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/subgroups.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/symbol_confidence.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/sys_abs_equiv.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/ usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/proto/ usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py usr/lib/python3.13/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py usr/lib/python3.13/dist-packages/cctbx/source_generators/ usr/lib/python3.13/dist-packages/cctbx/source_generators/__init__.py usr/lib/python3.13/dist-packages/cctbx/source_generators/flex_fwd_h.py usr/lib/python3.13/dist-packages/cctbx/source_generators/eltbx/ usr/lib/python3.13/dist-packages/cctbx/source_generators/eltbx/__init__.py usr/lib/python3.13/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py usr/lib/python3.13/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py usr/lib/python3.13/dist-packages/cctbx/uctbx/ usr/lib/python3.13/dist-packages/cctbx/uctbx/__init__.py usr/lib/python3.13/dist-packages/cctbx/uctbx/gruber_1973.py usr/lib/python3.13/dist-packages/cctbx/uctbx/gruber_1973_table_1.py usr/lib/python3.13/dist-packages/cctbx/uctbx/krivy_gruber_1976.py usr/lib/python3.13/dist-packages/cctbx/uctbx/reduction_base.py usr/lib/python3.13/dist-packages/cctbx/uctbx/determine_unit_cell/ usr/lib/python3.13/dist-packages/cctbx/uctbx/determine_unit_cell/__init__.py usr/lib/python3.13/dist-packages/cctbx/web/ usr/lib/python3.13/dist-packages/cctbx/web/__init__.py usr/lib/python3.13/dist-packages/cctbx/web/all_axes.py usr/lib/python3.13/dist-packages/cctbx/web/browse_settings.py usr/lib/python3.13/dist-packages/cctbx/web/cgi_utils.py usr/lib/python3.13/dist-packages/cctbx/web/change_basis.py usr/lib/python3.13/dist-packages/cctbx/web/change_hand.py usr/lib/python3.13/dist-packages/cctbx/web/change_setting.py usr/lib/python3.13/dist-packages/cctbx/web/dispatcher.py usr/lib/python3.13/dist-packages/cctbx/web/emma.py usr/lib/python3.13/dist-packages/cctbx/web/explore_symmetry.py usr/lib/python3.13/dist-packages/cctbx/web/frac_cart.py usr/lib/python3.13/dist-packages/cctbx/web/io_utils.py usr/lib/python3.13/dist-packages/cctbx/web/iotbx_cif_validate.py usr/lib/python3.13/dist-packages/cctbx/web/lattice_symmetry.py usr/lib/python3.13/dist-packages/cctbx/web/libtbx_help.py usr/lib/python3.13/dist-packages/cctbx/web/multiple_cell.py usr/lib/python3.13/dist-packages/cctbx/web/phase_o_phrenia.py usr/lib/python3.13/dist-packages/cctbx/web/replay.py usr/lib/python3.13/dist-packages/cctbx/web/shelx.py usr/lib/python3.13/dist-packages/cctbx/web/structure_factors.py usr/lib/python3.13/dist-packages/cctbx/web/structure_factors_pdb.py usr/lib/python3.13/dist-packages/cctbx/web/wyckoff.py usr/lib/python3.13/dist-packages/cctbx/web/asu_gallery/ usr/lib/python3.13/dist-packages/cctbx/web/asu_gallery/__init__.py usr/lib/python3.13/dist-packages/cctbx/web/asu_gallery/guide_to_notation.py usr/lib/python3.13/dist-packages/cctbx/web/asu_gallery/jv_asu.py usr/lib/python3.13/dist-packages/cctbx/web/asu_gallery/jv_index.py usr/lib/python3.13/dist-packages/cctbx/web/asu_gallery/jvx.py usr/lib/python3.13/dist-packages/cctbx/web/asu_gallery/web_links.py usr/lib/python3.13/dist-packages/cctbx/xray/ usr/lib/python3.13/dist-packages/cctbx/xray/__init__.py usr/lib/python3.13/dist-packages/cctbx/xray/ext.py usr/lib/python3.13/dist-packages/cctbx/xray/minimization.py usr/lib/python3.13/dist-packages/cctbx/xray/observation_types.py usr/lib/python3.13/dist-packages/cctbx/xray/scatterer.py usr/lib/python3.13/dist-packages/cctbx/xray/structure.py usr/lib/python3.13/dist-packages/cctbx/xray/target_functors.py usr/lib/python3.13/dist-packages/cctbx/xray/weighting_schemes.py usr/lib/python3.13/dist-packages/cctbx/xray/observations/ usr/lib/python3.13/dist-packages/cctbx/xray/observations/__init__.py usr/lib/python3.13/dist-packages/cctbx/xray/observations/tst_observations.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/ usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/__init__.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/algorithm.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/from_scatterers.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/from_scatterers_fft.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/global_counters.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/gradient_flags.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/gradients.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/gradients_base.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/gradients_direct.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/gradients_fft.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/manager.py usr/lib/python3.13/dist-packages/cctbx/xray/structure_factors/misc.py usr/lib/python3.13/dist-packages/cctbx/xray/targets/ usr/lib/python3.13/dist-packages/cctbx/xray/targets/__init__.py usr/lib/python3.13/dist-packages/cctbx/xray/targets/r1.py usr/lib/python3.13/dist-packages/cctbx/xray/targets/tst_r1.py usr/lib/python3.13/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py usr/lib/python3.13/dist-packages/cctbx_website/ usr/lib/python3.13/dist-packages/cctbx_website/__init__.py usr/lib/python3.13/dist-packages/cctbx_website/libtbx_refresh.py usr/lib/python3.13/dist-packages/cctbx_website/run_tests.py usr/lib/python3.13/dist-packages/cctbx_website/command_line/ usr/lib/python3.13/dist-packages/cctbx_website/command_line/__init__.py usr/lib/python3.13/dist-packages/cctbx_website/command_line/comment_to_docstring.py usr/lib/python3.13/dist-packages/cctbx_website/command_line/edit_for_boost.py usr/lib/python3.13/dist-packages/cctbx_website/command_line/edit_html.py usr/lib/python3.13/dist-packages/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py usr/lib/python3.13/dist-packages/cctbx_website/command_line/run_pdoc_cctbx_api.py usr/lib/python3.13/dist-packages/cctbx_website/command_line/tst_comment_to_docstring.py usr/lib/python3.13/dist-packages/cctbx_website/regression/ usr/lib/python3.13/dist-packages/cctbx_website/regression/__init__.py usr/lib/python3.13/dist-packages/cctbx_website/regression/exercise.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_10_doc_programming_tips_1.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_11_script_1.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_12_script_compare_ss.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_13_script_ideal_ss.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_15_doc_models_hierarchy.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_17_script_rfactors.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_18_doc_programming_tips_2.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_19_doc_programming_tips_3.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_1_template.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_2_doc_hlo_intro.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_3_doc_hlo_model_manager.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_4_doc_hlo_data_manager.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_5_doc_hlo_map_manager.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_7_doc_low_flex_advanced.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_8_doc_maps_intro.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_9_doc_maps_boxing.py usr/lib/python3.13/dist-packages/cctbx_website/regression/tst_py_from_html.py usr/lib/python3.13/dist-packages/cma_es/ usr/lib/python3.13/dist-packages/cma_es/__init__.py usr/lib/python3.13/dist-packages/cma_es/cma_es_interface.py usr/lib/python3.13/dist-packages/cma_es/run_tests.py usr/lib/python3.13/dist-packages/cma_es/tst_cma_es.py usr/lib/python3.13/dist-packages/cootbx/ usr/lib/python3.13/dist-packages/cootbx/__init__.py usr/lib/python3.13/dist-packages/cootbx/hydrogens_button.py usr/lib/python3.13/dist-packages/cootbx/interactive_edit.py usr/lib/python3.13/dist-packages/cootbx/ligand_checklist.py usr/lib/python3.13/dist-packages/cootbx/simple_zoom_list.py usr/lib/python3.13/dist-packages/cootbx/validation_lists.py usr/lib/python3.13/dist-packages/cootbx/view_refinement.py usr/lib/python3.13/dist-packages/cootbx/watch_file.py usr/lib/python3.13/dist-packages/cootbx/xmlrpc_server.py usr/lib/python3.13/dist-packages/dxtbx-3.28.0.dist-info/ usr/lib/python3.13/dist-packages/dxtbx-3.28.0.dist-info/METADATA usr/lib/python3.13/dist-packages/dxtbx-3.28.0.dist-info/RECORD usr/lib/python3.13/dist-packages/dxtbx-3.28.0.dist-info/WHEEL usr/lib/python3.13/dist-packages/dxtbx-3.28.0.dist-info/entry_points.txt usr/lib/python3.13/dist-packages/dxtbx-3.28.0.dist-info/licenses/ usr/lib/python3.13/dist-packages/dxtbx-3.28.0.dist-info/licenses/AUTHORS usr/lib/python3.13/dist-packages/dxtbx-3.28.0.dist-info/licenses/LICENSE.txt usr/lib/python3.13/dist-packages/dxtbx/ usr/lib/python3.13/dist-packages/dxtbx/CMakeLists.txt usr/lib/python3.13/dist-packages/dxtbx/__init__.py usr/lib/python3.13/dist-packages/dxtbx/datablock.py usr/lib/python3.13/dist-packages/dxtbx/dxtbx_ext.pyi usr/lib/python3.13/dist-packages/dxtbx/dxtbx_flumpy.pyi usr/lib/python3.13/dist-packages/dxtbx/dxtbx_format_image_ext.pyi usr/lib/python3.13/dist-packages/dxtbx/dxtbx_format_nexus_ext.pyi usr/lib/python3.13/dist-packages/dxtbx/dxtbx_imageset_ext.pyi usr/lib/python3.13/dist-packages/dxtbx/dxtbx_masking_ext.pyi usr/lib/python3.13/dist-packages/dxtbx/dxtbx_model_ext.pyi usr/lib/python3.13/dist-packages/dxtbx/error.h usr/lib/python3.13/dist-packages/dxtbx/ext.py usr/lib/python3.13/dist-packages/dxtbx/filecache.py usr/lib/python3.13/dist-packages/dxtbx/filecache_controller.py usr/lib/python3.13/dist-packages/dxtbx/flumpy.py usr/lib/python3.13/dist-packages/dxtbx/imageset.h usr/lib/python3.13/dist-packages/dxtbx/imageset.py usr/lib/python3.13/dist-packages/dxtbx/py.typed usr/lib/python3.13/dist-packages/dxtbx/sequence_filenames.py usr/lib/python3.13/dist-packages/dxtbx/version.py usr/lib/python3.13/dist-packages/dxtbx/array_family/ usr/lib/python3.13/dist-packages/dxtbx/array_family/flex_table.h usr/lib/python3.13/dist-packages/dxtbx/array_family/flex_table_suite.h usr/lib/python3.13/dist-packages/dxtbx/array_family/ref_pickle_double_buffered.h usr/lib/python3.13/dist-packages/dxtbx/boost_python/ usr/lib/python3.13/dist-packages/dxtbx/boost_python/compression.cc usr/lib/python3.13/dist-packages/dxtbx/boost_python/compression.h usr/lib/python3.13/dist-packages/dxtbx/boost_python/ext.cpp usr/lib/python3.13/dist-packages/dxtbx/boost_python/flumpy.cc usr/lib/python3.13/dist-packages/dxtbx/boost_python/imageset_ext.cc usr/lib/python3.13/dist-packages/dxtbx/command_line/ usr/lib/python3.13/dist-packages/dxtbx/command_line/__init__.py usr/lib/python3.13/dist-packages/dxtbx/command_line/any2nexus.py usr/lib/python3.13/dist-packages/dxtbx/command_line/debug_memory.py usr/lib/python3.13/dist-packages/dxtbx/command_line/depends_on.py usr/lib/python3.13/dist-packages/dxtbx/command_line/detector_superpose.py usr/lib/python3.13/dist-packages/dxtbx/command_line/display_parallax_correction.py 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usr/lib/python3.13/dist-packages/fable/command_line/cout.py usr/lib/python3.13/dist-packages/fable/command_line/fem_include_search_paths.py usr/lib/python3.13/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py usr/lib/python3.13/dist-packages/fable/command_line/read.py usr/lib/python3.13/dist-packages/fable/command_line/show_calls.py usr/lib/python3.13/dist-packages/fable/command_line/split.py usr/lib/python3.13/dist-packages/fast_linalg/ usr/lib/python3.13/dist-packages/fast_linalg/__init__.py usr/lib/python3.13/dist-packages/fftw3tbx/ usr/lib/python3.13/dist-packages/fftw3tbx/__init__.py usr/lib/python3.13/dist-packages/fftw3tbx/libtbx_refresh.py usr/lib/python3.13/dist-packages/fftw3tbx/tst_ext.py usr/lib/python3.13/dist-packages/gltbx/ usr/lib/python3.13/dist-packages/gltbx/__init__.py usr/lib/python3.13/dist-packages/gltbx/extract_opengl_specs.py usr/lib/python3.13/dist-packages/gltbx/fonts.py usr/lib/python3.13/dist-packages/gltbx/generate_defines_bpl.py usr/lib/python3.13/dist-packages/gltbx/generate_fonts_ucs_cpp.py usr/lib/python3.13/dist-packages/gltbx/generate_functions_bpl.py usr/lib/python3.13/dist-packages/gltbx/gl.py usr/lib/python3.13/dist-packages/gltbx/gl_managed.py usr/lib/python3.13/dist-packages/gltbx/glu.py usr/lib/python3.13/dist-packages/gltbx/images.py usr/lib/python3.13/dist-packages/gltbx/libtbx_refresh.py usr/lib/python3.13/dist-packages/gltbx/quadrics.py usr/lib/python3.13/dist-packages/gltbx/run_tests.py usr/lib/python3.13/dist-packages/gltbx/tst.py usr/lib/python3.13/dist-packages/gltbx/tst_ellipsoids.py usr/lib/python3.13/dist-packages/gltbx/tst_fonts.py usr/lib/python3.13/dist-packages/gltbx/tst_viewer_utils.py usr/lib/python3.13/dist-packages/gltbx/util.py usr/lib/python3.13/dist-packages/gltbx/viewer_utils.py usr/lib/python3.13/dist-packages/gltbx/wx_cube.py usr/lib/python3.13/dist-packages/gltbx/wx_ellipsoids_test.py usr/lib/python3.13/dist-packages/gltbx/wx_motion_on_tab.py usr/lib/python3.13/dist-packages/gltbx/wx_scene.py usr/lib/python3.13/dist-packages/gltbx/wx_viewer.py usr/lib/python3.13/dist-packages/gltbx/wx_viewer_example.py usr/lib/python3.13/dist-packages/gltbx/wx_viewer_leapmotion.py usr/lib/python3.13/dist-packages/gltbx/wx_viewers_images.py usr/lib/python3.13/dist-packages/gltbx/command_line/ usr/lib/python3.13/dist-packages/gltbx/command_line/__init__.py usr/lib/python3.13/dist-packages/gltbx/command_line/try_imports.py usr/lib/python3.13/dist-packages/iotbx/ usr/lib/python3.13/dist-packages/iotbx/__init__.py usr/lib/python3.13/dist-packages/iotbx/builders.py usr/lib/python3.13/dist-packages/iotbx/builders_depending_on_smtbx.py usr/lib/python3.13/dist-packages/iotbx/cif_mtz_data_labels.py usr/lib/python3.13/dist-packages/iotbx/cli_parser.py usr/lib/python3.13/dist-packages/iotbx/crystal_symmetry_from_any.py usr/lib/python3.13/dist-packages/iotbx/csv_utils.py usr/lib/python3.13/dist-packages/iotbx/data_plots.py usr/lib/python3.13/dist-packages/iotbx/extract_xtal_data.py usr/lib/python3.13/dist-packages/iotbx/file_reader.py usr/lib/python3.13/dist-packages/iotbx/format.py usr/lib/python3.13/dist-packages/iotbx/libtbx_refresh.py usr/lib/python3.13/dist-packages/iotbx/logfiles.py usr/lib/python3.13/dist-packages/iotbx/map_manager.py usr/lib/python3.13/dist-packages/iotbx/map_model_manager.py usr/lib/python3.13/dist-packages/iotbx/map_tools.py usr/lib/python3.13/dist-packages/iotbx/merging_statistics.py usr/lib/python3.13/dist-packages/iotbx/mtrix_biomt.py usr/lib/python3.13/dist-packages/iotbx/option_parser.py usr/lib/python3.13/dist-packages/iotbx/phases.py usr/lib/python3.13/dist-packages/iotbx/phil.py usr/lib/python3.13/dist-packages/iotbx/poscar.py usr/lib/python3.13/dist-packages/iotbx/pymol.py usr/lib/python3.13/dist-packages/iotbx/ranges.py usr/lib/python3.13/dist-packages/iotbx/reflection_file_converter.py usr/lib/python3.13/dist-packages/iotbx/reflection_file_editor.py usr/lib/python3.13/dist-packages/iotbx/reflection_file_reader.py usr/lib/python3.13/dist-packages/iotbx/reflection_file_utils.py usr/lib/python3.13/dist-packages/iotbx/run_tests.py usr/lib/python3.13/dist-packages/iotbx/simple_parser.py usr/lib/python3.13/dist-packages/iotbx/symmetry.py usr/lib/python3.13/dist-packages/iotbx/table_one.py usr/lib/python3.13/dist-packages/iotbx/wildcard.py usr/lib/python3.13/dist-packages/iotbx/PrettyPrint/ usr/lib/python3.13/dist-packages/iotbx/PrettyPrint/__init__.py usr/lib/python3.13/dist-packages/iotbx/PrettyPrint/tables.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/ usr/lib/python3.13/dist-packages/iotbx/bioinformatics/__init__.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/alignment_as_hsearch.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/ebi_wu_blast_xml.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/homologues.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/local_blast.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/ncbi_blast_xml.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/pdb_info.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/pubmed.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/structure.py usr/lib/python3.13/dist-packages/iotbx/bioinformatics/xmlbuild.py usr/lib/python3.13/dist-packages/iotbx/ccp4_map/ usr/lib/python3.13/dist-packages/iotbx/ccp4_map/__init__.py usr/lib/python3.13/dist-packages/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py usr/lib/python3.13/dist-packages/iotbx/ccp4_map/tst.py usr/lib/python3.13/dist-packages/iotbx/cif/ usr/lib/python3.13/dist-packages/iotbx/cif/__init__.py usr/lib/python3.13/dist-packages/iotbx/cif/builders.py usr/lib/python3.13/dist-packages/iotbx/cif/citations.py usr/lib/python3.13/dist-packages/iotbx/cif/cod_tools.py usr/lib/python3.13/dist-packages/iotbx/cif/crystal_symmetry_from_cif.py usr/lib/python3.13/dist-packages/iotbx/cif/errors.py usr/lib/python3.13/dist-packages/iotbx/cif/geometry.py usr/lib/python3.13/dist-packages/iotbx/cif/model.py usr/lib/python3.13/dist-packages/iotbx/cif/restraint_file_merge.py usr/lib/python3.13/dist-packages/iotbx/cif/restraints.py usr/lib/python3.13/dist-packages/iotbx/cif/validation.py usr/lib/python3.13/dist-packages/iotbx/cns/ usr/lib/python3.13/dist-packages/iotbx/cns/__init__.py usr/lib/python3.13/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py usr/lib/python3.13/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py usr/lib/python3.13/dist-packages/iotbx/cns/crystal_symmetry_utils.py usr/lib/python3.13/dist-packages/iotbx/cns/index_fobs_sigma_reader.py usr/lib/python3.13/dist-packages/iotbx/cns/miller_array.py usr/lib/python3.13/dist-packages/iotbx/cns/pdb_remarks.py usr/lib/python3.13/dist-packages/iotbx/cns/reflection_reader.py usr/lib/python3.13/dist-packages/iotbx/cns/sdb_reader.py usr/lib/python3.13/dist-packages/iotbx/cns/sdb_writer.py usr/lib/python3.13/dist-packages/iotbx/cns/space_group_symbols.py usr/lib/python3.13/dist-packages/iotbx/cns/tst_cns.py usr/lib/python3.13/dist-packages/iotbx/cns/xray_structure.py usr/lib/python3.13/dist-packages/iotbx/command_line/ usr/lib/python3.13/dist-packages/iotbx/command_line/__init__.py usr/lib/python3.13/dist-packages/iotbx/command_line/biomt_reconstruction.py usr/lib/python3.13/dist-packages/iotbx/command_line/blast_pdb.py usr/lib/python3.13/dist-packages/iotbx/command_line/build_phil_cache.py usr/lib/python3.13/dist-packages/iotbx/command_line/cbf_read.py usr/lib/python3.13/dist-packages/iotbx/command_line/cif.as_miller_arrays.py usr/lib/python3.13/dist-packages/iotbx/command_line/cif.as_xray_structure.py usr/lib/python3.13/dist-packages/iotbx/command_line/cif.validate.py usr/lib/python3.13/dist-packages/iotbx/command_line/cif_as_pdb.py usr/lib/python3.13/dist-packages/iotbx/command_line/cns.reflection_reader.py usr/lib/python3.13/dist-packages/iotbx/command_line/cns.sdb_reader.py usr/lib/python3.13/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py usr/lib/python3.13/dist-packages/iotbx/command_line/cns_as_mtz.py usr/lib/python3.13/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py usr/lib/python3.13/dist-packages/iotbx/command_line/csv_as_mtz.py usr/lib/python3.13/dist-packages/iotbx/command_line/dano_as_amplitudes.py usr/lib/python3.13/dist-packages/iotbx/command_line/detector_image_as_png.py usr/lib/python3.13/dist-packages/iotbx/command_line/distance_least_squares.py usr/lib/python3.13/dist-packages/iotbx/command_line/dtrek.to_cns.py usr/lib/python3.13/dist-packages/iotbx/command_line/effective_resolution.py usr/lib/python3.13/dist-packages/iotbx/command_line/emma.py usr/lib/python3.13/dist-packages/iotbx/command_line/explore_metric_symmetry.py usr/lib/python3.13/dist-packages/iotbx/command_line/export_scalepack_unmerged.py usr/lib/python3.13/dist-packages/iotbx/command_line/file_reader.py usr/lib/python3.13/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py usr/lib/python3.13/dist-packages/iotbx/command_line/french_wilson.py usr/lib/python3.13/dist-packages/iotbx/command_line/get_pubmed_citation.py usr/lib/python3.13/dist-packages/iotbx/command_line/lattice_symmetry.py usr/lib/python3.13/dist-packages/iotbx/command_line/merging_statistics.py usr/lib/python3.13/dist-packages/iotbx/command_line/mtrix_reconstruction.py usr/lib/python3.13/dist-packages/iotbx/command_line/mtz.dump.py usr/lib/python3.13/dist-packages/iotbx/command_line/mtz_as_cif.py usr/lib/python3.13/dist-packages/iotbx/command_line/patterson_map.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.as_xray_structure.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.b_factor_stats.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.box_around_molecule.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.hierarchy.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.insert_scale_records.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.join_fragment_files.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.print_sequence.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_add_conformations.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_as_cif.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_as_fasta.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_cif_conversion.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_get_citation.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_labels_comparison.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_labels_diff.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_remediator.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_show_connectivity.py usr/lib/python3.13/dist-packages/iotbx/command_line/pdb_split_models.py usr/lib/python3.13/dist-packages/iotbx/command_line/phil.py usr/lib/python3.13/dist-packages/iotbx/command_line/poscar_as_xray_structure.py usr/lib/python3.13/dist-packages/iotbx/command_line/r_free_flags_accumulation.py usr/lib/python3.13/dist-packages/iotbx/command_line/r_free_flags_as_cns.py usr/lib/python3.13/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py usr/lib/python3.13/dist-packages/iotbx/command_line/reflection_file_converter.py usr/lib/python3.13/dist-packages/iotbx/command_line/reflection_file_editor.py usr/lib/python3.13/dist-packages/iotbx/command_line/reflection_file_reader.py usr/lib/python3.13/dist-packages/iotbx/command_line/reflection_statistics.py usr/lib/python3.13/dist-packages/iotbx/command_line/reindex.py usr/lib/python3.13/dist-packages/iotbx/command_line/shelx.as_cif.py usr/lib/python3.13/dist-packages/iotbx/command_line/shelx.as_xray_structure.py usr/lib/python3.13/dist-packages/iotbx/command_line/shelx.dump_as_python.py usr/lib/python3.13/dist-packages/iotbx/command_line/show_distances.py usr/lib/python3.13/dist-packages/iotbx/command_line/show_systematic_absences.py usr/lib/python3.13/dist-packages/iotbx/command_line/simple_map_coefficients.py usr/lib/python3.13/dist-packages/iotbx/command_line/sort_atoms.py usr/lib/python3.13/dist-packages/iotbx/command_line/split_data_cif.py usr/lib/python3.13/dist-packages/iotbx/command_line/symmetry_search.py usr/lib/python3.13/dist-packages/iotbx/command_line/unique_with_biomt.py usr/lib/python3.13/dist-packages/iotbx/command_line/xplor.map.show_summary.py usr/lib/python3.13/dist-packages/iotbx/data_manager/ usr/lib/python3.13/dist-packages/iotbx/data_manager/__init__.py usr/lib/python3.13/dist-packages/iotbx/data_manager/common.py usr/lib/python3.13/dist-packages/iotbx/data_manager/map_coefficients.py usr/lib/python3.13/dist-packages/iotbx/data_manager/miller_array.py usr/lib/python3.13/dist-packages/iotbx/data_manager/model.py usr/lib/python3.13/dist-packages/iotbx/data_manager/ncs_spec.py usr/lib/python3.13/dist-packages/iotbx/data_manager/phil.py usr/lib/python3.13/dist-packages/iotbx/data_manager/real_map.py usr/lib/python3.13/dist-packages/iotbx/data_manager/restraint.py usr/lib/python3.13/dist-packages/iotbx/data_manager/sequence.py usr/lib/python3.13/dist-packages/iotbx/detectors/ usr/lib/python3.13/dist-packages/iotbx/detectors/__init__.py usr/lib/python3.13/dist-packages/iotbx/detectors/active_area_filter.py usr/lib/python3.13/dist-packages/iotbx/detectors/adsc.py usr/lib/python3.13/dist-packages/iotbx/detectors/adsc_minicbf.py usr/lib/python3.13/dist-packages/iotbx/detectors/adsc_module.py usr/lib/python3.13/dist-packages/iotbx/detectors/beam_center_convention.py usr/lib/python3.13/dist-packages/iotbx/detectors/bruker.py usr/lib/python3.13/dist-packages/iotbx/detectors/cbf.py usr/lib/python3.13/dist-packages/iotbx/detectors/cspad_detector_formats.py usr/lib/python3.13/dist-packages/iotbx/detectors/detectorbase.py usr/lib/python3.13/dist-packages/iotbx/detectors/dtrek.py usr/lib/python3.13/dist-packages/iotbx/detectors/edf.py usr/lib/python3.13/dist-packages/iotbx/detectors/eiger.py usr/lib/python3.13/dist-packages/iotbx/detectors/eiger_minicbf.py usr/lib/python3.13/dist-packages/iotbx/detectors/generic_detector.py usr/lib/python3.13/dist-packages/iotbx/detectors/hamamatsu.py usr/lib/python3.13/dist-packages/iotbx/detectors/image_from_http_request.py usr/lib/python3.13/dist-packages/iotbx/detectors/macscience.py usr/lib/python3.13/dist-packages/iotbx/detectors/mar.py usr/lib/python3.13/dist-packages/iotbx/detectors/marIP.py usr/lib/python3.13/dist-packages/iotbx/detectors/noir.py usr/lib/python3.13/dist-packages/iotbx/detectors/npy.py usr/lib/python3.13/dist-packages/iotbx/detectors/pilatus_minicbf.py usr/lib/python3.13/dist-packages/iotbx/detectors/pilatus_slice.py usr/lib/python3.13/dist-packages/iotbx/detectors/raxis.py usr/lib/python3.13/dist-packages/iotbx/detectors/raxis_nonsquare.py usr/lib/python3.13/dist-packages/iotbx/detectors/raxisbase.py usr/lib/python3.13/dist-packages/iotbx/detectors/saturn.py usr/lib/python3.13/dist-packages/iotbx/detectors/test_mar.py usr/lib/python3.13/dist-packages/iotbx/detectors/test_raxis2.py usr/lib/python3.13/dist-packages/iotbx/detectors/tst_adsc.py usr/lib/python3.13/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py usr/lib/python3.13/dist-packages/iotbx/detectors/tst_debug_write.py usr/lib/python3.13/dist-packages/iotbx/detectors/tst_detectors.py usr/lib/python3.13/dist-packages/iotbx/detectors/tst_py_cbf.py usr/lib/python3.13/dist-packages/iotbx/detectors/url_support.py usr/lib/python3.13/dist-packages/iotbx/detectors/context/ usr/lib/python3.13/dist-packages/iotbx/detectors/context/__init__.py usr/lib/python3.13/dist-packages/iotbx/detectors/context/camera_convention.py usr/lib/python3.13/dist-packages/iotbx/detectors/context/config_detector.py usr/lib/python3.13/dist-packages/iotbx/detectors/context/endstation.py usr/lib/python3.13/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py usr/lib/python3.13/dist-packages/iotbx/detectors/context/spot_xy_convention.py usr/lib/python3.13/dist-packages/iotbx/detectors/util/ usr/lib/python3.13/dist-packages/iotbx/detectors/util/__init__.py usr/lib/python3.13/dist-packages/iotbx/detectors/util/filters.py usr/lib/python3.13/dist-packages/iotbx/dsn6/ usr/lib/python3.13/dist-packages/iotbx/dsn6/__init__.py usr/lib/python3.13/dist-packages/iotbx/dsn6/tst.py usr/lib/python3.13/dist-packages/iotbx/dtrek/ usr/lib/python3.13/dist-packages/iotbx/dtrek/__init__.py usr/lib/python3.13/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py usr/lib/python3.13/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py usr/lib/python3.13/dist-packages/iotbx/dtrek/reflnlist_reader.py usr/lib/python3.13/dist-packages/iotbx/examples/ usr/lib/python3.13/dist-packages/iotbx/examples/__init__.py usr/lib/python3.13/dist-packages/iotbx/examples/direct_methods_light.py usr/lib/python3.13/dist-packages/iotbx/examples/libtbx_phil_examples.py usr/lib/python3.13/dist-packages/iotbx/examples/mtz_convert_free_to_work.py usr/lib/python3.13/dist-packages/iotbx/examples/mtz_free_flipper.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_hierarchy.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_shake.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_split_chains.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_symmetry_copies.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_to_map_simple.py usr/lib/python3.13/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py usr/lib/python3.13/dist-packages/iotbx/examples/prepare_model_for_rsr.py usr/lib/python3.13/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py usr/lib/python3.13/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py usr/lib/python3.13/dist-packages/iotbx/examples/tst_mtz_free_flipper.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_truncate_to_ala/ usr/lib/python3.13/dist-packages/iotbx/examples/pdb_truncate_to_ala/__init__.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_truncate_to_ala/v2_simple.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_truncate_to_ala/v3_better.py usr/lib/python3.13/dist-packages/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py usr/lib/python3.13/dist-packages/iotbx/fullprof/ usr/lib/python3.13/dist-packages/iotbx/fullprof/__init__.py usr/lib/python3.13/dist-packages/iotbx/fullprof/read_pcr.py usr/lib/python3.13/dist-packages/iotbx/fullprof/write_pcr.py usr/lib/python3.13/dist-packages/iotbx/gui_tools/ usr/lib/python3.13/dist-packages/iotbx/gui_tools/__init__.py usr/lib/python3.13/dist-packages/iotbx/gui_tools/cif_conversions.py usr/lib/python3.13/dist-packages/iotbx/gui_tools/import_data_and_flags.py usr/lib/python3.13/dist-packages/iotbx/gui_tools/models.py usr/lib/python3.13/dist-packages/iotbx/gui_tools/reflections.py usr/lib/python3.13/dist-packages/iotbx/gui_tools/tst.py usr/lib/python3.13/dist-packages/iotbx/kriber/ usr/lib/python3.13/dist-packages/iotbx/kriber/__init__.py usr/lib/python3.13/dist-packages/iotbx/kriber/strudat.py usr/lib/python3.13/dist-packages/iotbx/kriber/tst_strudat.py usr/lib/python3.13/dist-packages/iotbx/mrcfile/ usr/lib/python3.13/dist-packages/iotbx/mrcfile/__init__.py usr/lib/python3.13/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py usr/lib/python3.13/dist-packages/iotbx/mtz/ usr/lib/python3.13/dist-packages/iotbx/mtz/__init__.py usr/lib/python3.13/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py usr/lib/python3.13/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py usr/lib/python3.13/dist-packages/iotbx/mtz/tst.py usr/lib/python3.13/dist-packages/iotbx/mtz/tst_dano.py usr/lib/python3.13/dist-packages/iotbx/mtz/tst_ext.py usr/lib/python3.13/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py usr/lib/python3.13/dist-packages/iotbx/mtz/tst_miller_dict.py usr/lib/python3.13/dist-packages/iotbx/mtz/tst_unmerged.py usr/lib/python3.13/dist-packages/iotbx/ncs/ usr/lib/python3.13/dist-packages/iotbx/ncs/__init__.py usr/lib/python3.13/dist-packages/iotbx/pdb/ usr/lib/python3.13/dist-packages/iotbx/pdb/__init__.py usr/lib/python3.13/dist-packages/iotbx/pdb/aa_utils.py usr/lib/python3.13/dist-packages/iotbx/pdb/amino_acid_codes.py usr/lib/python3.13/dist-packages/iotbx/pdb/atom_name_interpretation.py usr/lib/python3.13/dist-packages/iotbx/pdb/atom_selection.py usr/lib/python3.13/dist-packages/iotbx/pdb/cryst1_interpretation.py usr/lib/python3.13/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py usr/lib/python3.13/dist-packages/iotbx/pdb/download.py usr/lib/python3.13/dist-packages/iotbx/pdb/experiment_type.py usr/lib/python3.13/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py usr/lib/python3.13/dist-packages/iotbx/pdb/fetch.py usr/lib/python3.13/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py usr/lib/python3.13/dist-packages/iotbx/pdb/hierarchy.py usr/lib/python3.13/dist-packages/iotbx/pdb/hybrid_36.py usr/lib/python3.13/dist-packages/iotbx/pdb/misc_records_output.py usr/lib/python3.13/dist-packages/iotbx/pdb/mmcif.py usr/lib/python3.13/dist-packages/iotbx/pdb/modified_aa_names.py usr/lib/python3.13/dist-packages/iotbx/pdb/modified_rna_dna_names.py usr/lib/python3.13/dist-packages/iotbx/pdb/nucleic_acid_codes.py usr/lib/python3.13/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py usr/lib/python3.13/dist-packages/iotbx/pdb/pdbe.py usr/lib/python3.13/dist-packages/iotbx/pdb/rcsb.py usr/lib/python3.13/dist-packages/iotbx/pdb/records.py usr/lib/python3.13/dist-packages/iotbx/pdb/remark_290_interpretation.py usr/lib/python3.13/dist-packages/iotbx/pdb/remark_2_interpretation.py usr/lib/python3.13/dist-packages/iotbx/pdb/remark_3_interpretation.py usr/lib/python3.13/dist-packages/iotbx/pdb/rna_dna_detection.py usr/lib/python3.13/dist-packages/iotbx/pdb/secondary_structure.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_atom_selection.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_atom_selection_string.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_ext.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_hierarchy.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_mmcif.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_pdb.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_secondary_structure.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_secondary_structure_2.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_tls.py usr/lib/python3.13/dist-packages/iotbx/pdb/tst_utils.py usr/lib/python3.13/dist-packages/iotbx/pdb/utils.py usr/lib/python3.13/dist-packages/iotbx/pdb/web_service_api.py usr/lib/python3.13/dist-packages/iotbx/pdb/xray_structure.py usr/lib/python3.13/dist-packages/iotbx/pdb/remediation/ usr/lib/python3.13/dist-packages/iotbx/pdb/remediation/__init__.py usr/lib/python3.13/dist-packages/iotbx/pdb/remediation/remediator.py usr/lib/python3.13/dist-packages/iotbx/pdb/remediation/tst_remediator.py usr/lib/python3.13/dist-packages/iotbx/programs/ usr/lib/python3.13/dist-packages/iotbx/programs/__init__.py usr/lib/python3.13/dist-packages/iotbx/programs/box_around_molecule.py usr/lib/python3.13/dist-packages/iotbx/programs/split_data_cif.py usr/lib/python3.13/dist-packages/iotbx/programs/unique_with_biomt.py usr/lib/python3.13/dist-packages/iotbx/regression/ usr/lib/python3.13/dist-packages/iotbx/regression/__init__.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_add_conformations.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_all_chain_ids.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_atom_selections_10k.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_bioinformatics.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_box_around_molecule.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_cif_1.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_cli_parser.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_csv_utils.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_data_manager.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_data_plots.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_examples.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_extract_xtal_data.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_fetch.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_file_reader.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_generate_n_char_string.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_group_rounding.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_id_str.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_lattice_symmetry.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_manager.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_manager_2.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_manager_wrapping.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_2.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_3.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_4.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_cif.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_map_tools.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_merging_statistics.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_miller_sort_asu.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_mmcif_input.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_mmcif_multimodel.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_mmcif_segids.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_mrc_io.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_mtz_as_cif.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_patterson.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_pdb_as_cif.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_pdb_as_fasta.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_pdb_cif_cells.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_pdb_link_records.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_phases.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_phil.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_poscar.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_reflection_file_editor.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_reflection_file_reader.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_reflection_file_utils.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_reflection_statistics.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_reindex.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_restraints_merge.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_show_systematic_absences.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_simple_map_coefficients.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_simple_parser.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_sort_atoms.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_split_data_cif.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_split_models.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_symmetry.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_wildcard.py usr/lib/python3.13/dist-packages/iotbx/regression/tst_xray_scale.py usr/lib/python3.13/dist-packages/iotbx/regression/utils.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/ usr/lib/python3.13/dist-packages/iotbx/regression/ncs/__init__.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_ncs.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_ncs_input.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py usr/lib/python3.13/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py usr/lib/python3.13/dist-packages/iotbx/scalepack/ usr/lib/python3.13/dist-packages/iotbx/scalepack/__init__.py usr/lib/python3.13/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py usr/lib/python3.13/dist-packages/iotbx/scalepack/merge.py usr/lib/python3.13/dist-packages/iotbx/scalepack/no_merge_original_index.py usr/lib/python3.13/dist-packages/iotbx/scalepack/space_group_dictionary.py usr/lib/python3.13/dist-packages/iotbx/scalepack/tst_merge.py usr/lib/python3.13/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py usr/lib/python3.13/dist-packages/iotbx/shelx/ usr/lib/python3.13/dist-packages/iotbx/shelx/__init__.py usr/lib/python3.13/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py usr/lib/python3.13/dist-packages/iotbx/shelx/errors.py usr/lib/python3.13/dist-packages/iotbx/shelx/fcf.py usr/lib/python3.13/dist-packages/iotbx/shelx/fvar_encoding.py usr/lib/python3.13/dist-packages/iotbx/shelx/hklf.py usr/lib/python3.13/dist-packages/iotbx/shelx/lexer.py usr/lib/python3.13/dist-packages/iotbx/shelx/parsers.py usr/lib/python3.13/dist-packages/iotbx/shelx/tokens.py usr/lib/python3.13/dist-packages/iotbx/shelx/tst_fvar_encoding.py usr/lib/python3.13/dist-packages/iotbx/shelx/tst_hklf.py usr/lib/python3.13/dist-packages/iotbx/shelx/tst_lex_parse_build.py usr/lib/python3.13/dist-packages/iotbx/shelx/tst_writer.py usr/lib/python3.13/dist-packages/iotbx/shelx/write_ins.py usr/lib/python3.13/dist-packages/iotbx/shelx/writer.py usr/lib/python3.13/dist-packages/iotbx/solve/ usr/lib/python3.13/dist-packages/iotbx/solve/__init__.py usr/lib/python3.13/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py usr/lib/python3.13/dist-packages/iotbx/solve/fpfm_reader.py usr/lib/python3.13/dist-packages/iotbx/xds/ usr/lib/python3.13/dist-packages/iotbx/xds/__init__.py usr/lib/python3.13/dist-packages/iotbx/xds/blank_cbf.py usr/lib/python3.13/dist-packages/iotbx/xds/correction.py usr/lib/python3.13/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py usr/lib/python3.13/dist-packages/iotbx/xds/gain_cbf.py usr/lib/python3.13/dist-packages/iotbx/xds/geometry.py usr/lib/python3.13/dist-packages/iotbx/xds/integrate_hkl.py usr/lib/python3.13/dist-packages/iotbx/xds/read_ascii.py usr/lib/python3.13/dist-packages/iotbx/xds/spot_xds.py usr/lib/python3.13/dist-packages/iotbx/xds/xds_cbf.py usr/lib/python3.13/dist-packages/iotbx/xds/xds_inp.py usr/lib/python3.13/dist-packages/iotbx/xds/xparm.py usr/lib/python3.13/dist-packages/iotbx/xplor/ usr/lib/python3.13/dist-packages/iotbx/xplor/__init__.py usr/lib/python3.13/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py usr/lib/python3.13/dist-packages/iotbx/xplor/ext.py usr/lib/python3.13/dist-packages/iotbx/xplor/map.py usr/lib/python3.13/dist-packages/iotbx/xplor/tst_xplormap.py usr/lib/python3.13/dist-packages/libtbx/ usr/lib/python3.13/dist-packages/libtbx/__init__.py usr/lib/python3.13/dist-packages/libtbx/assert_utils.py usr/lib/python3.13/dist-packages/libtbx/binary_search.py usr/lib/python3.13/dist-packages/libtbx/callbacks.py usr/lib/python3.13/dist-packages/libtbx/citations.py usr/lib/python3.13/dist-packages/libtbx/clear_paths.py usr/lib/python3.13/dist-packages/libtbx/cli.py usr/lib/python3.13/dist-packages/libtbx/cluster.py usr/lib/python3.13/dist-packages/libtbx/clusterTests.py usr/lib/python3.13/dist-packages/libtbx/code_analysis.py usr/lib/python3.13/dist-packages/libtbx/complex_math.py usr/lib/python3.13/dist-packages/libtbx/configure.py usr/lib/python3.13/dist-packages/libtbx/console_utils.py usr/lib/python3.13/dist-packages/libtbx/containers.py usr/lib/python3.13/dist-packages/libtbx/cpp_function_name.py usr/lib/python3.13/dist-packages/libtbx/crossmingw.py usr/lib/python3.13/dist-packages/libtbx/dlite.py usr/lib/python3.13/dist-packages/libtbx/easy_mp.py usr/lib/python3.13/dist-packages/libtbx/easy_pickle.py usr/lib/python3.13/dist-packages/libtbx/easy_profile.py usr/lib/python3.13/dist-packages/libtbx/easy_run.py usr/lib/python3.13/dist-packages/libtbx/env_config.py usr/lib/python3.13/dist-packages/libtbx/file_clutter.py usr/lib/python3.13/dist-packages/libtbx/find_reference_cycles.py usr/lib/python3.13/dist-packages/libtbx/forward_compatibility.py usr/lib/python3.13/dist-packages/libtbx/introspection.py usr/lib/python3.13/dist-packages/libtbx/libtbx_refresh.py usr/lib/python3.13/dist-packages/libtbx/load_env.py usr/lib/python3.13/dist-packages/libtbx/log.py usr/lib/python3.13/dist-packages/libtbx/math_utils.py usr/lib/python3.13/dist-packages/libtbx/metric_prefixes.py usr/lib/python3.13/dist-packages/libtbx/mpi4py.py usr/lib/python3.13/dist-packages/libtbx/object_oriented_patterns.py usr/lib/python3.13/dist-packages/libtbx/objgraph.py usr/lib/python3.13/dist-packages/libtbx/option_parser.py usr/lib/python3.13/dist-packages/libtbx/path.py usr/lib/python3.13/dist-packages/libtbx/pkg_utils.py usr/lib/python3.13/dist-packages/libtbx/program_template.py usr/lib/python3.13/dist-packages/libtbx/progress.py usr/lib/python3.13/dist-packages/libtbx/pyframe.py usr/lib/python3.13/dist-packages/libtbx/pyplot.py usr/lib/python3.13/dist-packages/libtbx/python_code_parsing.py usr/lib/python3.13/dist-packages/libtbx/resource_monitor.py usr/lib/python3.13/dist-packages/libtbx/run_tests.py usr/lib/python3.13/dist-packages/libtbx/runtime_utils.py usr/lib/python3.13/dist-packages/libtbx/simplexml.py usr/lib/python3.13/dist-packages/libtbx/smart_open.py usr/lib/python3.13/dist-packages/libtbx/start_print_trace.py usr/lib/python3.13/dist-packages/libtbx/str_utils.py usr/lib/python3.13/dist-packages/libtbx/subprocess_with_fixes.py usr/lib/python3.13/dist-packages/libtbx/table_utils.py usr/lib/python3.13/dist-packages/libtbx/thread_utils.py usr/lib/python3.13/dist-packages/libtbx/topological_sort.py usr/lib/python3.13/dist-packages/libtbx/try_hello_world_c.py usr/lib/python3.13/dist-packages/libtbx/tst_add_docstrings_with_ai.py usr/lib/python3.13/dist-packages/libtbx/tst_binary_search.py usr/lib/python3.13/dist-packages/libtbx/tst_citations.py usr/lib/python3.13/dist-packages/libtbx/tst_containers.py usr/lib/python3.13/dist-packages/libtbx/tst_dlite.py usr/lib/python3.13/dist-packages/libtbx/tst_easy_mp.py usr/lib/python3.13/dist-packages/libtbx/tst_easy_mp_multicore.py usr/lib/python3.13/dist-packages/libtbx/tst_easy_mp_state.py usr/lib/python3.13/dist-packages/libtbx/tst_easy_pickle.py usr/lib/python3.13/dist-packages/libtbx/tst_find_unused_imports.py usr/lib/python3.13/dist-packages/libtbx/tst_fully_buffered_timeout.py usr/lib/python3.13/dist-packages/libtbx/tst_mahalanobis.py usr/lib/python3.13/dist-packages/libtbx/tst_math_utils.py usr/lib/python3.13/dist-packages/libtbx/tst_object_oriented_patterns.py usr/lib/python3.13/dist-packages/libtbx/tst_path.py usr/lib/python3.13/dist-packages/libtbx/tst_program_template.py usr/lib/python3.13/dist-packages/libtbx/tst_python_code_parsing.py usr/lib/python3.13/dist-packages/libtbx/tst_representation.py usr/lib/python3.13/dist-packages/libtbx/tst_run_tests_parallel_retry.py usr/lib/python3.13/dist-packages/libtbx/tst_run_tests_parallel_unique_dirs.py usr/lib/python3.13/dist-packages/libtbx/tst_runtime_utils.py usr/lib/python3.13/dist-packages/libtbx/tst_scheduling.py usr/lib/python3.13/dist-packages/libtbx/tst_str_utils.py usr/lib/python3.13/dist-packages/libtbx/tst_thread_utils.py usr/lib/python3.13/dist-packages/libtbx/tst_topological_sort.py usr/lib/python3.13/dist-packages/libtbx/tst_utils.py usr/lib/python3.13/dist-packages/libtbx/tst_version.py usr/lib/python3.13/dist-packages/libtbx/tst_word_index_generator.py usr/lib/python3.13/dist-packages/libtbx/tst_xmlrpc_utils.py usr/lib/python3.13/dist-packages/libtbx/utils.py usr/lib/python3.13/dist-packages/libtbx/version.py usr/lib/python3.13/dist-packages/libtbx/wingide.py usr/lib/python3.13/dist-packages/libtbx/word_index_generator.py usr/lib/python3.13/dist-packages/libtbx/xmlrpc_server_example.py usr/lib/python3.13/dist-packages/libtbx/xmlrpc_utils.py usr/lib/python3.13/dist-packages/libtbx/auto_build/ usr/lib/python3.13/dist-packages/libtbx/auto_build/__init__.py usr/lib/python3.13/dist-packages/libtbx/auto_build/bootstrap.py usr/lib/python3.13/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py usr/lib/python3.13/dist-packages/libtbx/auto_build/create_installer.py usr/lib/python3.13/dist-packages/libtbx/auto_build/create_mac_app.py usr/lib/python3.13/dist-packages/libtbx/auto_build/create_mac_pkg.py usr/lib/python3.13/dist-packages/libtbx/auto_build/create_windows_exe.py usr/lib/python3.13/dist-packages/libtbx/auto_build/create_windows_installer.py usr/lib/python3.13/dist-packages/libtbx/auto_build/install_base_packages.py usr/lib/python3.13/dist-packages/libtbx/auto_build/install_conda.py usr/lib/python3.13/dist-packages/libtbx/auto_build/install_distribution.py usr/lib/python3.13/dist-packages/libtbx/auto_build/installer_utils.py usr/lib/python3.13/dist-packages/libtbx/auto_build/make_bundle.py usr/lib/python3.13/dist-packages/libtbx/auto_build/package_defs.py usr/lib/python3.13/dist-packages/libtbx/auto_build/plus_installer.py usr/lib/python3.13/dist-packages/libtbx/auto_build/regenerate_module_files.py usr/lib/python3.13/dist-packages/libtbx/auto_build/rpath.py usr/lib/python3.13/dist-packages/libtbx/auto_build/setup_installer.py usr/lib/python3.13/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py usr/lib/python3.13/dist-packages/libtbx/bundle/ usr/lib/python3.13/dist-packages/libtbx/bundle/__init__.py usr/lib/python3.13/dist-packages/libtbx/bundle/copy_all.py usr/lib/python3.13/dist-packages/libtbx/bundle/copy_build_libtbx.py usr/lib/python3.13/dist-packages/libtbx/bundle/copy_runtime_sources.py usr/lib/python3.13/dist-packages/libtbx/bundle/install_bat.py usr/lib/python3.13/dist-packages/libtbx/bundle/install_csh.py usr/lib/python3.13/dist-packages/libtbx/bundle/utils.py usr/lib/python3.13/dist-packages/libtbx/command_line/ usr/lib/python3.13/dist-packages/libtbx/command_line/__init__.py usr/lib/python3.13/dist-packages/libtbx/command_line/add_docstrings_with_ai.py usr/lib/python3.13/dist-packages/libtbx/command_line/analyse_code_comments.py usr/lib/python3.13/dist-packages/libtbx/command_line/any2unix.py usr/lib/python3.13/dist-packages/libtbx/command_line/assert_line_count.py usr/lib/python3.13/dist-packages/libtbx/command_line/assert_not_show_diff.py usr/lib/python3.13/dist-packages/libtbx/command_line/assert_stdin.py usr/lib/python3.13/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py usr/lib/python3.13/dist-packages/libtbx/command_line/assert_stdin_ends_with.py usr/lib/python3.13/dist-packages/libtbx/command_line/bootstrap.py usr/lib/python3.13/dist-packages/libtbx/command_line/bundle_as_exe.py usr/lib/python3.13/dist-packages/libtbx/command_line/cctbx_chunk.py usr/lib/python3.13/dist-packages/libtbx/command_line/check_libcpp.py usr/lib/python3.13/dist-packages/libtbx/command_line/clean_clutter.py usr/lib/python3.13/dist-packages/libtbx/command_line/clear_paths.py usr/lib/python3.13/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py usr/lib/python3.13/dist-packages/libtbx/command_line/create_install_script_bat.py usr/lib/python3.13/dist-packages/libtbx/command_line/create_installer.py usr/lib/python3.13/dist-packages/libtbx/command_line/create_mac_app.py usr/lib/python3.13/dist-packages/libtbx/command_line/create_selfx.py usr/lib/python3.13/dist-packages/libtbx/command_line/create_unzipsfx.py usr/lib/python3.13/dist-packages/libtbx/command_line/create_windows_exe.py usr/lib/python3.13/dist-packages/libtbx/command_line/dtrace.py usr/lib/python3.13/dist-packages/libtbx/command_line/easy_qsub.py usr/lib/python3.13/dist-packages/libtbx/command_line/env_run.py usr/lib/python3.13/dist-packages/libtbx/command_line/epydoc_run.py usr/lib/python3.13/dist-packages/libtbx/command_line/extract_code_from_txt.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_clutter.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_files.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_in_repositories.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_old_style_classes.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_pdb_mmcif_problems.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_reserved_names.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_under_build.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_untested.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_unused_imports.py usr/lib/python3.13/dist-packages/libtbx/command_line/find_unused_imports_crude.py usr/lib/python3.13/dist-packages/libtbx/command_line/git_avoid_merges.py usr/lib/python3.13/dist-packages/libtbx/command_line/help.py usr/lib/python3.13/dist-packages/libtbx/command_line/import_all_ext.py usr/lib/python3.13/dist-packages/libtbx/command_line/import_all_python.py usr/lib/python3.13/dist-packages/libtbx/command_line/install.py usr/lib/python3.13/dist-packages/libtbx/command_line/install_conda.py usr/lib/python3.13/dist-packages/libtbx/command_line/ipython_shell_start.py usr/lib/python3.13/dist-packages/libtbx/command_line/line_count.py usr/lib/python3.13/dist-packages/libtbx/command_line/list_files.py usr/lib/python3.13/dist-packages/libtbx/command_line/list_modules.py usr/lib/python3.13/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py usr/lib/python3.13/dist-packages/libtbx/command_line/make_dist.py usr/lib/python3.13/dist-packages/libtbx/command_line/make_sphinx_html.py usr/lib/python3.13/dist-packages/libtbx/command_line/nequal.py usr/lib/python3.13/dist-packages/libtbx/command_line/parallel_simple.py usr/lib/python3.13/dist-packages/libtbx/command_line/path_utility.py usr/lib/python3.13/dist-packages/libtbx/command_line/phil.py usr/lib/python3.13/dist-packages/libtbx/command_line/prime_factors_of.py usr/lib/python3.13/dist-packages/libtbx/command_line/printenv.py usr/lib/python3.13/dist-packages/libtbx/command_line/py_compile_all.py usr/lib/python3.13/dist-packages/libtbx/command_line/raise_exception_for_testing.py usr/lib/python3.13/dist-packages/libtbx/command_line/reindent.py usr/lib/python3.13/dist-packages/libtbx/command_line/remote_processing.py usr/lib/python3.13/dist-packages/libtbx/command_line/remove_tree.py usr/lib/python3.13/dist-packages/libtbx/command_line/remove_unused_imports.py usr/lib/python3.13/dist-packages/libtbx/command_line/resource_monitor_plot.py usr/lib/python3.13/dist-packages/libtbx/command_line/run_pickled_function.py usr/lib/python3.13/dist-packages/libtbx/command_line/run_tests_parallel.py usr/lib/python3.13/dist-packages/libtbx/command_line/scons.py usr/lib/python3.13/dist-packages/libtbx/command_line/seconds_since_the_epoch.py usr/lib/python3.13/dist-packages/libtbx/command_line/sge_available_slots.py usr/lib/python3.13/dist-packages/libtbx/command_line/sge_qstat_counts.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_all_on_path.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_bin_path.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_build_options.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_build_path.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_but_no_repr.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_commands.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_date_and_time.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_dist_paths.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_env.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_environ_usage.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_full_command_path.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_host_and_user.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_include_paths.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_lib_path.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_module_dependencies.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_number_of_processors.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_numeric_version.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_numpy_version.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_python_dependencies.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_python_sys_executable.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_pythonpath.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_repository_paths.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_tests.py usr/lib/python3.13/dist-packages/libtbx/command_line/show_variable_names.py usr/lib/python3.13/dist-packages/libtbx/command_line/sphinx_build.py usr/lib/python3.13/dist-packages/libtbx/command_line/start_binary_bundle.py usr/lib/python3.13/dist-packages/libtbx/command_line/start_process.py usr/lib/python3.13/dist-packages/libtbx/command_line/wait_for_file.py usr/lib/python3.13/dist-packages/libtbx/development/ usr/lib/python3.13/dist-packages/libtbx/development/__init__.py usr/lib/python3.13/dist-packages/libtbx/development/except_Exception.py usr/lib/python3.13/dist-packages/libtbx/development/timers.py usr/lib/python3.13/dist-packages/libtbx/development/xcode_build_phase.py usr/lib/python3.13/dist-packages/libtbx/langchain/ usr/lib/python3.13/dist-packages/libtbx/langchain/__init__.py usr/lib/python3.13/dist-packages/libtbx/langchain/phenix_knowledge.py usr/lib/python3.13/dist-packages/libtbx/langchain/run_build_db.py usr/lib/python3.13/dist-packages/libtbx/langchain/run_inspect_db.py usr/lib/python3.13/dist-packages/libtbx/langchain/run_query_docs.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/ usr/lib/python3.13/dist-packages/libtbx/langchain/agent/__init__.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/advice_preprocessor.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/api_client.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/best_files_tracker.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/command_builder.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/command_postprocessor.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/config_loader.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/contract.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/directive_extractor.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/directive_validator.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/display_data_model.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/docs_tools.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/dry_run_manager.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/error_analyzer.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/error_classifier.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/event_formatter.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/event_log.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/failure_diagnoser.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/file_metadata.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/file_utils.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/format_validation.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/gate_evaluator.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/generate_logic_doc.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/generate_safety_docs.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/graph.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/graph_nodes.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/graph_state.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/hypothesis_evaluator.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/intent_classifier.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/kb_tags.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/log_section_extractor.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/memory.py usr/lib/python3.13/dist-packages/libtbx/langchain/agent/metric_evaluator.py 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usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_autosol_bugs.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_backward_compat.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_best_files_tracker.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_command_builder.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_contract_compliance.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_copies_tracking.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_decision_flow.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_diagnosed_failure_stop.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_directive_extractor.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_directive_validator.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_directives_integration.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_display_data_model.py 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usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_hardcoded_cleanup.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_history_analysis.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_hypothesis_evaluator.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_integration.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_intent_classifier.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_langchain_tools.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_log_extractor.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_metric_patterns.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_metrics_analyzer.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_mtz_crosscheck.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_n_bugs.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_new_programs.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_old_client_compat.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_pattern_manager.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_perceive_stop_checks.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase0_static_audit.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase1_contract_gaps.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase2_path_consistency.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase3_bug5.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase3_serialization_symmetry.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase4_history_flags.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase5_error_classification.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase6_category_consumer.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase7_routing_simulation.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase8_command_building.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phase9_llm_perturbation.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phaser_multimodel.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_phil_validation.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_plan_generator.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_plan_schema.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_program_registration.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_sanity_checker.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_scenario_tracer.py usr/lib/python3.13/dist-packages/libtbx/langchain/tests/tst_session_directives.py 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usr/lib/python3.13/dist-packages/libtbx/scheduling/parallel_for.py usr/lib/python3.13/dist-packages/libtbx/scheduling/philgen.py usr/lib/python3.13/dist-packages/libtbx/scheduling/process_pool.py usr/lib/python3.13/dist-packages/libtbx/scheduling/result.py usr/lib/python3.13/dist-packages/libtbx/scheduling/shared_resource.py usr/lib/python3.13/dist-packages/libtbx/scheduling/socket_queue.py usr/lib/python3.13/dist-packages/libtbx/scheduling/stacktrace.py usr/lib/python3.13/dist-packages/libtbx/scheduling/thread_handler.py usr/lib/python3.13/dist-packages/libtbx/server/ usr/lib/python3.13/dist-packages/libtbx/server/FileClient.py usr/lib/python3.13/dist-packages/libtbx/server/FileServer.py usr/lib/python3.13/dist-packages/libtbx/server/FileSocket.py usr/lib/python3.13/dist-packages/libtbx/server/SocketServer.py usr/lib/python3.13/dist-packages/libtbx/server/StartServer.py usr/lib/python3.13/dist-packages/libtbx/server/__init__.py usr/lib/python3.13/dist-packages/libtbx/sphinx/ usr/lib/python3.13/dist-packages/libtbx/sphinx/__init__.py usr/lib/python3.13/dist-packages/libtbx/sphinx/phil.py usr/lib/python3.13/dist-packages/libtbx/sphinx/pubmed.py usr/lib/python3.13/dist-packages/libtbx/sphinx/python_string.py usr/lib/python3.13/dist-packages/libtbx/test_utils/ usr/lib/python3.13/dist-packages/libtbx/test_utils/__init__.py usr/lib/python3.13/dist-packages/libtbx/test_utils/parallel.py usr/lib/python3.13/dist-packages/mmtbx/ usr/lib/python3.13/dist-packages/mmtbx/__init__.py usr/lib/python3.13/dist-packages/mmtbx/arrays.py usr/lib/python3.13/dist-packages/mmtbx/clashes.py usr/lib/python3.13/dist-packages/mmtbx/domains_from_pae.py usr/lib/python3.13/dist-packages/mmtbx/f_model_info.py usr/lib/python3.13/dist-packages/mmtbx/find_peaks.py usr/lib/python3.13/dist-packages/mmtbx/grow_density.py usr/lib/python3.13/dist-packages/mmtbx/invariant_domain.py usr/lib/python3.13/dist-packages/mmtbx/lattice.py usr/lib/python3.13/dist-packages/mmtbx/libtbx_refresh.py usr/lib/python3.13/dist-packages/mmtbx/map_tools.py usr/lib/python3.13/dist-packages/mmtbx/model_vs_data.py usr/lib/python3.13/dist-packages/mmtbx/msa.py usr/lib/python3.13/dist-packages/mmtbx/pdb_distances.py usr/lib/python3.13/dist-packages/mmtbx/pdb_symmetry.py usr/lib/python3.13/dist-packages/mmtbx/pdbtools.py usr/lib/python3.13/dist-packages/mmtbx/process_predicted_model.py usr/lib/python3.13/dist-packages/mmtbx/proq2.py usr/lib/python3.13/dist-packages/mmtbx/real_space_correlation.py usr/lib/python3.13/dist-packages/mmtbx/resolve_resources.py usr/lib/python3.13/dist-packages/mmtbx/restraints.py usr/lib/python3.13/dist-packages/mmtbx/run_tests.py usr/lib/python3.13/dist-packages/mmtbx/superpose.py usr/lib/python3.13/dist-packages/mmtbx/xmanip.py usr/lib/python3.13/dist-packages/mmtbx/xmanip_tasks.py usr/lib/python3.13/dist-packages/mmtbx/alignment/ usr/lib/python3.13/dist-packages/mmtbx/alignment/__init__.py usr/lib/python3.13/dist-packages/mmtbx/atomic_environment_vectors/ usr/lib/python3.13/dist-packages/mmtbx/atomic_environment_vectors/__init__.py usr/lib/python3.13/dist-packages/mmtbx/atomic_environment_vectors/tst.py usr/lib/python3.13/dist-packages/mmtbx/building/ usr/lib/python3.13/dist-packages/mmtbx/building/__init__.py usr/lib/python3.13/dist-packages/mmtbx/building/cablam_idealization.py usr/lib/python3.13/dist-packages/mmtbx/building/extend_sidechains.py usr/lib/python3.13/dist-packages/mmtbx/building/loop_idealization.py usr/lib/python3.13/dist-packages/mmtbx/building/merge_models.py usr/lib/python3.13/dist-packages/mmtbx/building/minimize_chain.py usr/lib/python3.13/dist-packages/mmtbx/building/tst_extend_sidechains.py usr/lib/python3.13/dist-packages/mmtbx/building/tst_extend_sidechains_2.py usr/lib/python3.13/dist-packages/mmtbx/building/ligands/ usr/lib/python3.13/dist-packages/mmtbx/building/ligands/__init__.py usr/lib/python3.13/dist-packages/mmtbx/building/ligands/lifi.py usr/lib/python3.13/dist-packages/mmtbx/building/ligands/tst_00.py usr/lib/python3.13/dist-packages/mmtbx/building/loop_closure/ usr/lib/python3.13/dist-packages/mmtbx/building/loop_closure/__init__.py usr/lib/python3.13/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py usr/lib/python3.13/dist-packages/mmtbx/building/loop_closure/ccd.py usr/lib/python3.13/dist-packages/mmtbx/building/loop_closure/starting_conformations.py usr/lib/python3.13/dist-packages/mmtbx/building/loop_closure/utils.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/ usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/__init__.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/example.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/example2.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/mosaic.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/scaler.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py usr/lib/python3.13/dist-packages/mmtbx/bulk_solvent/tst_scaler.py usr/lib/python3.13/dist-packages/mmtbx/chemical_components/ usr/lib/python3.13/dist-packages/mmtbx/chemical_components/__init__.py usr/lib/python3.13/dist-packages/mmtbx/chemical_components/cif_parser.py usr/lib/python3.13/dist-packages/mmtbx/chemical_components/tst.py usr/lib/python3.13/dist-packages/mmtbx/command_line/ usr/lib/python3.13/dist-packages/mmtbx/command_line/__init__.py usr/lib/python3.13/dist-packages/mmtbx/command_line/altloc_remediate.py usr/lib/python3.13/dist-packages/mmtbx/command_line/angle.py usr/lib/python3.13/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py usr/lib/python3.13/dist-packages/mmtbx/command_line/arginine_geometry.py usr/lib/python3.13/dist-packages/mmtbx/command_line/atom_valence_simple.py usr/lib/python3.13/dist-packages/mmtbx/command_line/barbed_wire_analysis.py usr/lib/python3.13/dist-packages/mmtbx/command_line/cablam.py usr/lib/python3.13/dist-packages/mmtbx/command_line/cablam_idealization.py usr/lib/python3.13/dist-packages/mmtbx/command_line/cbetadev.py usr/lib/python3.13/dist-packages/mmtbx/command_line/cc_star.py usr/lib/python3.13/dist-packages/mmtbx/command_line/chiral_validation.py usr/lib/python3.13/dist-packages/mmtbx/command_line/cif_as_mtz.py usr/lib/python3.13/dist-packages/mmtbx/command_line/clashscore.py usr/lib/python3.13/dist-packages/mmtbx/command_line/clashscore2.py usr/lib/python3.13/dist-packages/mmtbx/command_line/comparama.py usr/lib/python3.13/dist-packages/mmtbx/command_line/debug_riding.py usr/lib/python3.13/dist-packages/mmtbx/command_line/density_modification.py usr/lib/python3.13/dist-packages/mmtbx/command_line/development_aev.py usr/lib/python3.13/dist-packages/mmtbx/command_line/development_fem.py usr/lib/python3.13/dist-packages/mmtbx/command_line/distance_difference.py usr/lib/python3.13/dist-packages/mmtbx/command_line/dynamics.py usr/lib/python3.13/dist-packages/mmtbx/command_line/electrons.py usr/lib/python3.13/dist-packages/mmtbx/command_line/emringer.py usr/lib/python3.13/dist-packages/mmtbx/command_line/emringer_score.py usr/lib/python3.13/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py usr/lib/python3.13/dist-packages/mmtbx/command_line/f000.py usr/lib/python3.13/dist-packages/mmtbx/command_line/fab_elbow_angle.py usr/lib/python3.13/dist-packages/mmtbx/command_line/fake_f_obs.py usr/lib/python3.13/dist-packages/mmtbx/command_line/fetch_pdb.py usr/lib/python3.13/dist-packages/mmtbx/command_line/find_peaks_holes.py usr/lib/python3.13/dist-packages/mmtbx/command_line/find_residue_in_pdb.py usr/lib/python3.13/dist-packages/mmtbx/command_line/find_tls_groups.py usr/lib/python3.13/dist-packages/mmtbx/command_line/fmodel.py usr/lib/python3.13/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py usr/lib/python3.13/dist-packages/mmtbx/command_line/geometry_minimization.py usr/lib/python3.13/dist-packages/mmtbx/command_line/grow_density.py usr/lib/python3.13/dist-packages/mmtbx/command_line/hbond.py usr/lib/python3.13/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py usr/lib/python3.13/dist-packages/mmtbx/command_line/holton_geometry_validation.py usr/lib/python3.13/dist-packages/mmtbx/command_line/hydrogenate.py usr/lib/python3.13/dist-packages/mmtbx/command_line/kinemage.py usr/lib/python3.13/dist-packages/mmtbx/command_line/ligand_restraints_validation.py usr/lib/python3.13/dist-packages/mmtbx/command_line/map_box.py usr/lib/python3.13/dist-packages/mmtbx/command_line/map_comparison.py usr/lib/python3.13/dist-packages/mmtbx/command_line/map_to_model_histogram.py usr/lib/python3.13/dist-packages/mmtbx/command_line/map_to_structure_factors.py usr/lib/python3.13/dist-packages/mmtbx/command_line/maps.py usr/lib/python3.13/dist-packages/mmtbx/command_line/mask.py usr/lib/python3.13/dist-packages/mmtbx/command_line/massage_data.py usr/lib/python3.13/dist-packages/mmtbx/command_line/matthews.py usr/lib/python3.13/dist-packages/mmtbx/command_line/maximum_entropy_map.py usr/lib/python3.13/dist-packages/mmtbx/command_line/model_idealization.py usr/lib/python3.13/dist-packages/mmtbx/command_line/model_map.py usr/lib/python3.13/dist-packages/mmtbx/command_line/model_model_distances.py usr/lib/python3.13/dist-packages/mmtbx/command_line/model_vs_data.py usr/lib/python3.13/dist-packages/mmtbx/command_line/model_vs_map.py usr/lib/python3.13/dist-packages/mmtbx/command_line/model_vs_sequence.py usr/lib/python3.13/dist-packages/mmtbx/command_line/models_as_chains.py usr/lib/python3.13/dist-packages/mmtbx/command_line/molprobity.py usr/lib/python3.13/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py usr/lib/python3.13/dist-packages/mmtbx/command_line/mp_geo.py usr/lib/python3.13/dist-packages/mmtbx/command_line/mp_validate_bonds.py usr/lib/python3.13/dist-packages/mmtbx/command_line/mtz2map.py usr/lib/python3.13/dist-packages/mmtbx/command_line/next_gen_atom_typing.py usr/lib/python3.13/dist-packages/mmtbx/command_line/nonbonded_overlaps.py usr/lib/python3.13/dist-packages/mmtbx/command_line/omegalyze.py usr/lib/python3.13/dist-packages/mmtbx/command_line/pdb_atom_selection.py usr/lib/python3.13/dist-packages/mmtbx/command_line/pdb_interpretation.py usr/lib/python3.13/dist-packages/mmtbx/command_line/pdbtools.py usr/lib/python3.13/dist-packages/mmtbx/command_line/perigee.py usr/lib/python3.13/dist-packages/mmtbx/command_line/plan_sad_experiment.py usr/lib/python3.13/dist-packages/mmtbx/command_line/polder.py usr/lib/python3.13/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py usr/lib/python3.13/dist-packages/mmtbx/command_line/probe2.py usr/lib/python3.13/dist-packages/mmtbx/command_line/probescore_ligand.py usr/lib/python3.13/dist-packages/mmtbx/command_line/process_predicted_model.py usr/lib/python3.13/dist-packages/mmtbx/command_line/prune_model.py usr/lib/python3.13/dist-packages/mmtbx/command_line/quantum_interface.py usr/lib/python3.13/dist-packages/mmtbx/command_line/r_factor_statistics.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rama_z.py usr/lib/python3.13/dist-packages/mmtbx/command_line/ramalyze.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rank_scale_map.py usr/lib/python3.13/dist-packages/mmtbx/command_line/real_space_correlation.py usr/lib/python3.13/dist-packages/mmtbx/command_line/real_space_diff_map.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py usr/lib/python3.13/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py usr/lib/python3.13/dist-packages/mmtbx/command_line/reduce2.py usr/lib/python3.13/dist-packages/mmtbx/command_line/reduce_cryoem_resolution.py usr/lib/python3.13/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py usr/lib/python3.13/dist-packages/mmtbx/command_line/remove_outliers.py usr/lib/python3.13/dist-packages/mmtbx/command_line/ribbons.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rigid_bond_test.py usr/lib/python3.13/dist-packages/mmtbx/command_line/ringer.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rna_validate.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rna_validate_bonds.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rna_validate_puckers.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rna_validate_suites.py usr/lib/python3.13/dist-packages/mmtbx/command_line/rotalyze.py usr/lib/python3.13/dist-packages/mmtbx/command_line/search_pdb_symmetry.py usr/lib/python3.13/dist-packages/mmtbx/command_line/secondary_structure_restraints.py usr/lib/python3.13/dist-packages/mmtbx/command_line/secondary_structure_validation.py usr/lib/python3.13/dist-packages/mmtbx/command_line/select_best_starting_model.py usr/lib/python3.13/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py usr/lib/python3.13/dist-packages/mmtbx/command_line/sisa.py usr/lib/python3.13/dist-packages/mmtbx/command_line/sort_hetatms.py usr/lib/python3.13/dist-packages/mmtbx/command_line/ss_idealization.py usr/lib/python3.13/dist-packages/mmtbx/command_line/suitename.py usr/lib/python3.13/dist-packages/mmtbx/command_line/suitename_old.py usr/lib/python3.13/dist-packages/mmtbx/command_line/super.py usr/lib/python3.13/dist-packages/mmtbx/command_line/superpose.py usr/lib/python3.13/dist-packages/mmtbx/command_line/taam_minus_iam.py usr/lib/python3.13/dist-packages/mmtbx/command_line/table_one.py usr/lib/python3.13/dist-packages/mmtbx/command_line/tls.py usr/lib/python3.13/dist-packages/mmtbx/command_line/tls_analysis.py usr/lib/python3.13/dist-packages/mmtbx/command_line/tls_as_xyz.py usr/lib/python3.13/dist-packages/mmtbx/command_line/undowser.py usr/lib/python3.13/dist-packages/mmtbx/command_line/undowser2.py usr/lib/python3.13/dist-packages/mmtbx/command_line/validate_H_cl_app.py usr/lib/python3.13/dist-packages/mmtbx/command_line/validate_ligands.py usr/lib/python3.13/dist-packages/mmtbx/command_line/validation_summary.py usr/lib/python3.13/dist-packages/mmtbx/command_line/verify_mon_lib_data.py usr/lib/python3.13/dist-packages/mmtbx/command_line/water_b_factors.py usr/lib/python3.13/dist-packages/mmtbx/command_line/where_is_that_cif_file.py usr/lib/python3.13/dist-packages/mmtbx/command_line/xmanip.py usr/lib/python3.13/dist-packages/mmtbx/command_line/xtrapol8.py usr/lib/python3.13/dist-packages/mmtbx/command_line/xtriage.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/ usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/__init__.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/enol_peptide_restraints.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/histidines.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/mcl.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/omega.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/omega_database.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/rotamers.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_enol_peptide.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py usr/lib/python3.13/dist-packages/mmtbx/conformation_dependent_library/utils.py usr/lib/python3.13/dist-packages/mmtbx/den/ usr/lib/python3.13/dist-packages/mmtbx/den/__init__.py usr/lib/python3.13/dist-packages/mmtbx/den/plot_weights.py usr/lib/python3.13/dist-packages/mmtbx/den/refinement.py usr/lib/python3.13/dist-packages/mmtbx/density_modification/ usr/lib/python3.13/dist-packages/mmtbx/density_modification/__init__.py usr/lib/python3.13/dist-packages/mmtbx/density_modification/tst_density_modification.py usr/lib/python3.13/dist-packages/mmtbx/disorder/ usr/lib/python3.13/dist-packages/mmtbx/disorder/__init__.py usr/lib/python3.13/dist-packages/mmtbx/disorder/analyze_model.py usr/lib/python3.13/dist-packages/mmtbx/disorder/backbone.py usr/lib/python3.13/dist-packages/mmtbx/disorder/tst.py usr/lib/python3.13/dist-packages/mmtbx/disorder/tst_analyze_model.py usr/lib/python3.13/dist-packages/mmtbx/disorder/tst_backbone.py usr/lib/python3.13/dist-packages/mmtbx/dynamics/ usr/lib/python3.13/dist-packages/mmtbx/dynamics/__init__.py usr/lib/python3.13/dist-packages/mmtbx/dynamics/cartesian_dynamics.py usr/lib/python3.13/dist-packages/mmtbx/dynamics/constants.py usr/lib/python3.13/dist-packages/mmtbx/dynamics/ensemble_cd.py usr/lib/python3.13/dist-packages/mmtbx/dynamics/simulated_annealing.py usr/lib/python3.13/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py usr/lib/python3.13/dist-packages/mmtbx/dynamics/tst_sa.py usr/lib/python3.13/dist-packages/mmtbx/f_model/ usr/lib/python3.13/dist-packages/mmtbx/f_model/__init__.py usr/lib/python3.13/dist-packages/mmtbx/f_model/f_model.py usr/lib/python3.13/dist-packages/mmtbx/f_model/f_model_info.py usr/lib/python3.13/dist-packages/mmtbx/geometry/ usr/lib/python3.13/dist-packages/mmtbx/geometry/__init__.py usr/lib/python3.13/dist-packages/mmtbx/geometry/altloc.py usr/lib/python3.13/dist-packages/mmtbx/geometry/asa.py usr/lib/python3.13/dist-packages/mmtbx/geometry/clash.py usr/lib/python3.13/dist-packages/mmtbx/geometry/indexing.py usr/lib/python3.13/dist-packages/mmtbx/geometry/shared_types.py usr/lib/python3.13/dist-packages/mmtbx/geometry/sphere_surface_sampling.py usr/lib/python3.13/dist-packages/mmtbx/geometry/topology.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/ usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/__init__.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/afitt.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/c_beta.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/external.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/mopac_manager.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/orca_manager.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/qi_utils.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/qm_manager.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/quantum_interface.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/ramachandran.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/reference.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/tst_manager.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/torsion_restraints/ usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py usr/lib/python3.13/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/ usr/lib/python3.13/dist-packages/mmtbx/hydrogens/__init__.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/build_hydrogens.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/connectivity.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/find.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/neutron_utils.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/parameterization.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/riding.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_0.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_1.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_4.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_5.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_6.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_7.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_8.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_9.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_time.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_connectivity.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_riding_manager.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/tst_validate_H.py usr/lib/python3.13/dist-packages/mmtbx/hydrogens/validate_H.py usr/lib/python3.13/dist-packages/mmtbx/ias/ usr/lib/python3.13/dist-packages/mmtbx/ias/__init__.py usr/lib/python3.13/dist-packages/mmtbx/ias/tst_ias.py usr/lib/python3.13/dist-packages/mmtbx/idealized_aa_residues/ usr/lib/python3.13/dist-packages/mmtbx/idealized_aa_residues/__init__.py usr/lib/python3.13/dist-packages/mmtbx/idealized_aa_residues/all_his.py usr/lib/python3.13/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py usr/lib/python3.13/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py usr/lib/python3.13/dist-packages/mmtbx/idealized_aa_residues/tst.py usr/lib/python3.13/dist-packages/mmtbx/ions/ usr/lib/python3.13/dist-packages/mmtbx/ions/__init__.py usr/lib/python3.13/dist-packages/mmtbx/ions/build.py usr/lib/python3.13/dist-packages/mmtbx/ions/environment.py usr/lib/python3.13/dist-packages/mmtbx/ions/geometry.py usr/lib/python3.13/dist-packages/mmtbx/ions/halides.py usr/lib/python3.13/dist-packages/mmtbx/ions/identify.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_environment.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_geometries.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_parameters.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_pick_approx_zn.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_pick_ca.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_pick_ca_svm.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_pick_k.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_pick_mg.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_pickle.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_symmetry_axis.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_utils.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_validate_ca.py usr/lib/python3.13/dist-packages/mmtbx/ions/tst_validate_mg.py usr/lib/python3.13/dist-packages/mmtbx/ions/utils.py usr/lib/python3.13/dist-packages/mmtbx/ions/svm/ usr/lib/python3.13/dist-packages/mmtbx/ions/svm/__init__.py usr/lib/python3.13/dist-packages/mmtbx/ions/svm/dump_sites.py usr/lib/python3.13/dist-packages/mmtbx/ions/svm/tst_classifier_01.py usr/lib/python3.13/dist-packages/mmtbx/ions/svm/tst_classifier_02.py usr/lib/python3.13/dist-packages/mmtbx/ions/svm/utils.py usr/lib/python3.13/dist-packages/mmtbx/kinemage/ usr/lib/python3.13/dist-packages/mmtbx/kinemage/__init__.py usr/lib/python3.13/dist-packages/mmtbx/kinemage/nrubs.py usr/lib/python3.13/dist-packages/mmtbx/kinemage/ribbons.py usr/lib/python3.13/dist-packages/mmtbx/kinemage/validation.py usr/lib/python3.13/dist-packages/mmtbx/ligands/ usr/lib/python3.13/dist-packages/mmtbx/ligands/__init__.py usr/lib/python3.13/dist-packages/mmtbx/ligands/chemistry.py usr/lib/python3.13/dist-packages/mmtbx/ligands/elbow_utils.py usr/lib/python3.13/dist-packages/mmtbx/ligands/electrons.py usr/lib/python3.13/dist-packages/mmtbx/ligands/hierarchy_utils.py usr/lib/python3.13/dist-packages/mmtbx/ligands/rdkit_utils.py usr/lib/python3.13/dist-packages/mmtbx/ligands/ready_set_basics.py usr/lib/python3.13/dist-packages/mmtbx/ligands/ready_set_utils.py usr/lib/python3.13/dist-packages/mmtbx/ligands/tst_electron_scripting.py usr/lib/python3.13/dist-packages/mmtbx/ligands/tst_ready_set_utils.py usr/lib/python3.13/dist-packages/mmtbx/ligands/tst_xtal_screens.py usr/lib/python3.13/dist-packages/mmtbx/ligands/xtal_screens.py usr/lib/python3.13/dist-packages/mmtbx/maps/ usr/lib/python3.13/dist-packages/mmtbx/maps/__init__.py usr/lib/python3.13/dist-packages/mmtbx/maps/composite_omit_map.py usr/lib/python3.13/dist-packages/mmtbx/maps/correlation.py usr/lib/python3.13/dist-packages/mmtbx/maps/fem.py usr/lib/python3.13/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py usr/lib/python3.13/dist-packages/mmtbx/maps/kick.py usr/lib/python3.13/dist-packages/mmtbx/maps/map_model_cc.py usr/lib/python3.13/dist-packages/mmtbx/maps/mtriage.py usr/lib/python3.13/dist-packages/mmtbx/maps/polder.py usr/lib/python3.13/dist-packages/mmtbx/maps/superpose.py usr/lib/python3.13/dist-packages/mmtbx/maps/tst_composite_omit_map.py usr/lib/python3.13/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py usr/lib/python3.13/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py usr/lib/python3.13/dist-packages/mmtbx/maps/tst_correlation.py usr/lib/python3.13/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py usr/lib/python3.13/dist-packages/mmtbx/maps/utils.py usr/lib/python3.13/dist-packages/mmtbx/maps/xtrapol8.py usr/lib/python3.13/dist-packages/mmtbx/masks/ usr/lib/python3.13/dist-packages/mmtbx/masks/__init__.py usr/lib/python3.13/dist-packages/mmtbx/masks/tst_asu_mask.py usr/lib/python3.13/dist-packages/mmtbx/masks/tst_masks.py usr/lib/python3.13/dist-packages/mmtbx/max_lik/ usr/lib/python3.13/dist-packages/mmtbx/max_lik/__init__.py usr/lib/python3.13/dist-packages/mmtbx/max_lik/max_like_non_uniform.py usr/lib/python3.13/dist-packages/mmtbx/max_lik/maxlik.py usr/lib/python3.13/dist-packages/mmtbx/max_lik/tst_max_lik.py usr/lib/python3.13/dist-packages/mmtbx/max_lik/tst_maxlik.py usr/lib/python3.13/dist-packages/mmtbx/model/ usr/lib/python3.13/dist-packages/mmtbx/model/__init__.py usr/lib/python3.13/dist-packages/mmtbx/model/model.py usr/lib/python3.13/dist-packages/mmtbx/model/restraints.py usr/lib/python3.13/dist-packages/mmtbx/model/statistics.py usr/lib/python3.13/dist-packages/mmtbx/model/utils.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/ usr/lib/python3.13/dist-packages/mmtbx/monomer_library/__init__.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/bondlength_defaults.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/cif_triage.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/cif_types.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/conv_v2_v3.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/geostd_utils.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/glyco_utils.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/idealized_aa.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/linking_mixins.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/linking_setup.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/linking_utils.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/mmtbx_utils.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/pdb_interpretation.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/rotamer_utils.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/server.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_chg.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_cif_triage.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_cif_types.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_linking.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_motif.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_paral_geo.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_4.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_5.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_selection.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_server.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py usr/lib/python3.13/dist-packages/mmtbx/monomer_library/tst_user_supplied_library.py usr/lib/python3.13/dist-packages/mmtbx/nci/ usr/lib/python3.13/dist-packages/mmtbx/nci/__init__.py usr/lib/python3.13/dist-packages/mmtbx/nci/data_filtering.py usr/lib/python3.13/dist-packages/mmtbx/nci/hbond.py usr/lib/python3.13/dist-packages/mmtbx/nci/skew_kurt_plot.py usr/lib/python3.13/dist-packages/mmtbx/nci/tst_hbond.py usr/lib/python3.13/dist-packages/mmtbx/ncs/ usr/lib/python3.13/dist-packages/mmtbx/ncs/__init__.py usr/lib/python3.13/dist-packages/mmtbx/ncs/cartesian_restraints.py usr/lib/python3.13/dist-packages/mmtbx/ncs/ligands.py usr/lib/python3.13/dist-packages/mmtbx/ncs/ncs.py usr/lib/python3.13/dist-packages/mmtbx/ncs/ncs_params.py usr/lib/python3.13/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py usr/lib/python3.13/dist-packages/mmtbx/ncs/ncs_search.py usr/lib/python3.13/dist-packages/mmtbx/ncs/ncs_utils.py usr/lib/python3.13/dist-packages/mmtbx/ncs/tncs.py usr/lib/python3.13/dist-packages/mmtbx/pair_interaction/ usr/lib/python3.13/dist-packages/mmtbx/pair_interaction/__init__.py usr/lib/python3.13/dist-packages/mmtbx/pair_interaction/pair_interaction.py usr/lib/python3.13/dist-packages/mmtbx/pair_interaction/tst_00.py usr/lib/python3.13/dist-packages/mmtbx/pair_interaction/tst_01.py usr/lib/python3.13/dist-packages/mmtbx/pair_interaction/tst_02.py usr/lib/python3.13/dist-packages/mmtbx/pair_interaction/tst_03.py usr/lib/python3.13/dist-packages/mmtbx/pair_interaction/tst_04.py usr/lib/python3.13/dist-packages/mmtbx/pair_interaction/tst_05.py usr/lib/python3.13/dist-packages/mmtbx/polygon/ usr/lib/python3.13/dist-packages/mmtbx/polygon/__init__.py usr/lib/python3.13/dist-packages/mmtbx/polygon/output.py usr/lib/python3.13/dist-packages/mmtbx/polygon/tst.py usr/lib/python3.13/dist-packages/mmtbx/polygon/tst_gui.py usr/lib/python3.13/dist-packages/mmtbx/polygon/tst_polygon_data.py usr/lib/python3.13/dist-packages/mmtbx/probe/ usr/lib/python3.13/dist-packages/mmtbx/probe/AtomTypes.py usr/lib/python3.13/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py usr/lib/python3.13/dist-packages/mmtbx/probe/Helpers.py usr/lib/python3.13/dist-packages/mmtbx/probe/__init__.py usr/lib/python3.13/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py usr/lib/python3.13/dist-packages/mmtbx/programs/ usr/lib/python3.13/dist-packages/mmtbx/programs/__init__.py usr/lib/python3.13/dist-packages/mmtbx/programs/arginine_geometry.py usr/lib/python3.13/dist-packages/mmtbx/programs/atom_selection.py usr/lib/python3.13/dist-packages/mmtbx/programs/atom_valence_simple.py usr/lib/python3.13/dist-packages/mmtbx/programs/barbed_wire_analysis.py usr/lib/python3.13/dist-packages/mmtbx/programs/cablam.py usr/lib/python3.13/dist-packages/mmtbx/programs/cablam_idealization.py usr/lib/python3.13/dist-packages/mmtbx/programs/cbetadev.py usr/lib/python3.13/dist-packages/mmtbx/programs/chiral_validation.py usr/lib/python3.13/dist-packages/mmtbx/programs/clashscore.py usr/lib/python3.13/dist-packages/mmtbx/programs/clashscore2.py usr/lib/python3.13/dist-packages/mmtbx/programs/comparama.py usr/lib/python3.13/dist-packages/mmtbx/programs/debug_riding.py usr/lib/python3.13/dist-packages/mmtbx/programs/elbow_services.py usr/lib/python3.13/dist-packages/mmtbx/programs/emringer.py usr/lib/python3.13/dist-packages/mmtbx/programs/fetch.py usr/lib/python3.13/dist-packages/mmtbx/programs/fmodel.py usr/lib/python3.13/dist-packages/mmtbx/programs/hbond.py usr/lib/python3.13/dist-packages/mmtbx/programs/holton_geometry_validation.py usr/lib/python3.13/dist-packages/mmtbx/programs/hydrogenate.py usr/lib/python3.13/dist-packages/mmtbx/programs/ligand_restraints_validation.py usr/lib/python3.13/dist-packages/mmtbx/programs/mask.py usr/lib/python3.13/dist-packages/mmtbx/programs/matthews.py usr/lib/python3.13/dist-packages/mmtbx/programs/model_vs_sequence.py usr/lib/python3.13/dist-packages/mmtbx/programs/mp_validate_bonds.py usr/lib/python3.13/dist-packages/mmtbx/programs/next_gen_atom_typing.py usr/lib/python3.13/dist-packages/mmtbx/programs/nonbonded_overlaps.py usr/lib/python3.13/dist-packages/mmtbx/programs/omegalyze.py usr/lib/python3.13/dist-packages/mmtbx/programs/pdb_as_cif.py usr/lib/python3.13/dist-packages/mmtbx/programs/pdbtools.py usr/lib/python3.13/dist-packages/mmtbx/programs/polder.py usr/lib/python3.13/dist-packages/mmtbx/programs/prepare_pdb_deposition.py usr/lib/python3.13/dist-packages/mmtbx/programs/probe2.py usr/lib/python3.13/dist-packages/mmtbx/programs/probescore_ligand.py usr/lib/python3.13/dist-packages/mmtbx/programs/process_predicted_model.py usr/lib/python3.13/dist-packages/mmtbx/programs/quantum_interface.py usr/lib/python3.13/dist-packages/mmtbx/programs/rama_z.py usr/lib/python3.13/dist-packages/mmtbx/programs/ramalyze.py usr/lib/python3.13/dist-packages/mmtbx/programs/real_space_correlation.py usr/lib/python3.13/dist-packages/mmtbx/programs/reduce2.py usr/lib/python3.13/dist-packages/mmtbx/programs/reduce_cryoem_resolution.py usr/lib/python3.13/dist-packages/mmtbx/programs/ribbons.py usr/lib/python3.13/dist-packages/mmtbx/programs/rna_validate.py usr/lib/python3.13/dist-packages/mmtbx/programs/rna_validate_bonds.py usr/lib/python3.13/dist-packages/mmtbx/programs/rna_validate_puckers.py usr/lib/python3.13/dist-packages/mmtbx/programs/rna_validate_suites.py usr/lib/python3.13/dist-packages/mmtbx/programs/rotalyze.py usr/lib/python3.13/dist-packages/mmtbx/programs/ss_idealization.py usr/lib/python3.13/dist-packages/mmtbx/programs/ss_validation.py usr/lib/python3.13/dist-packages/mmtbx/programs/suitename.py usr/lib/python3.13/dist-packages/mmtbx/programs/suitename_old.py usr/lib/python3.13/dist-packages/mmtbx/programs/taam_minus_iam.py usr/lib/python3.13/dist-packages/mmtbx/programs/undowser.py usr/lib/python3.13/dist-packages/mmtbx/programs/undowser2.py usr/lib/python3.13/dist-packages/mmtbx/programs/validate_ligands.py usr/lib/python3.13/dist-packages/mmtbx/programs/water_b_factors.py usr/lib/python3.13/dist-packages/mmtbx/programs/xtrapol8.py usr/lib/python3.13/dist-packages/mmtbx/real_space/ usr/lib/python3.13/dist-packages/mmtbx/real_space/__init__.py usr/lib/python3.13/dist-packages/mmtbx/real_space/tst.py usr/lib/python3.13/dist-packages/mmtbx/reduce/ usr/lib/python3.13/dist-packages/mmtbx/reduce/InteractionGraph.py usr/lib/python3.13/dist-packages/mmtbx/reduce/Movers.py usr/lib/python3.13/dist-packages/mmtbx/reduce/Optimizers.py usr/lib/python3.13/dist-packages/mmtbx/reduce/__init__.py usr/lib/python3.13/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py usr/lib/python3.13/dist-packages/mmtbx/refinement/ usr/lib/python3.13/dist-packages/mmtbx/refinement/__init__.py usr/lib/python3.13/dist-packages/mmtbx/refinement/adp_refinement.py usr/lib/python3.13/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py usr/lib/python3.13/dist-packages/mmtbx/refinement/calculators.py usr/lib/python3.13/dist-packages/mmtbx/refinement/data.py usr/lib/python3.13/dist-packages/mmtbx/refinement/energy_monitor.py usr/lib/python3.13/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py usr/lib/python3.13/dist-packages/mmtbx/refinement/geometry_minimization.py usr/lib/python3.13/dist-packages/mmtbx/refinement/group.py usr/lib/python3.13/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py usr/lib/python3.13/dist-packages/mmtbx/refinement/minimization.py usr/lib/python3.13/dist-packages/mmtbx/refinement/minimization_monitor.py usr/lib/python3.13/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py usr/lib/python3.13/dist-packages/mmtbx/refinement/occupancies.py usr/lib/python3.13/dist-packages/mmtbx/refinement/orca.py usr/lib/python3.13/dist-packages/mmtbx/refinement/print_statistics.py usr/lib/python3.13/dist-packages/mmtbx/refinement/refinement_flags.py usr/lib/python3.13/dist-packages/mmtbx/refinement/restraints.py usr/lib/python3.13/dist-packages/mmtbx/refinement/rigid_body.py usr/lib/python3.13/dist-packages/mmtbx/refinement/select_best_starting_model.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tardy.py usr/lib/python3.13/dist-packages/mmtbx/refinement/targets.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_fit_rotamers.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_group.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_group_2.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_misc.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_occupancy_selections.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_real_space_simple.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_refinement_flags.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_rigid_body.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py usr/lib/python3.13/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py usr/lib/python3.13/dist-packages/mmtbx/refinement/utils.py usr/lib/python3.13/dist-packages/mmtbx/refinement/weights.py usr/lib/python3.13/dist-packages/mmtbx/refinement/weights_params.py usr/lib/python3.13/dist-packages/mmtbx/refinement/wrappers.py usr/lib/python3.13/dist-packages/mmtbx/refinement/wx_tardy_pdb.py usr/lib/python3.13/dist-packages/mmtbx/refinement/ensemble_refinement/ usr/lib/python3.13/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py usr/lib/python3.13/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py usr/lib/python3.13/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/ usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/__init__.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/adp.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/fit_his.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/fit_residue.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/fit_residues.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/fit_water.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/individual_sites.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/occupancy.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/rigid_body.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_monitor.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/tst_weight.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/utils.py usr/lib/python3.13/dist-packages/mmtbx/refinement/real_space/weight.py usr/lib/python3.13/dist-packages/mmtbx/regression/ usr/lib/python3.13/dist-packages/mmtbx/regression/__init__.py usr/lib/python3.13/dist-packages/mmtbx/regression/make_fake_anomalous_data.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_add_h_to_water.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_adp_restraints.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_alignment.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_altloc_chain_break.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_altloc_remediate.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_angle.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_anomalous_substructure.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_arginine_geometry.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_cc_star.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_chain_comparison.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_chain_comparison_cif.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_clashes.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_command_line_input.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_domains_from_pae.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_domains_from_pae_cif.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_dynamics_cli.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_examples.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_find_ncs.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_find_ss_structure.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_find_ss_structure_cif.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_flipping_his.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_fmodel.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_fmodel_2.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_fmodel_and_dm.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_fmodel_fd.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_fmodel_misc.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_geometry_minimization.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_holton_geometry_validation.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_ligand_ncs.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_loop_closure.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_lrv.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_map_model_cc.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_map_type_parser.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_maps_misc.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_metal_link_1.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_minimize_chain.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_ml_estimate.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_model_map.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_model_vs_map.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_model_vs_sequence.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_models_to_from_chains.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_msa.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_mtz2map.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_multi_residue_class.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_origin_ids.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_pdbtools.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_polder.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_polder_1.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_polder_2.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_polder_3.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_polder_4.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_polder_box.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_polder_ccs.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_probe.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_process_predicted_model.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_process_predicted_model_cif.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_prune_model.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_rank_scale_map.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_rdkit_utils_fragmentation.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_real_space_correlation.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_reduce.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_reduce_cryoem_resolution.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_reduce_timeout.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_regularize_from_pdb_cif.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_ribbons.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_rigid_bond_test.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_ringer.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_sampled_model_density.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_scattering_table.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_scattering_type_registry.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_schrodinger_interface.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_sequence_validation.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_sort_hetatms.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_special_term_at_end.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_statistics_output.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_superpose.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_table_one.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_utils.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_validate_ligands.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_validate_ligands_2.py usr/lib/python3.13/dist-packages/mmtbx/regression/tst_validation_summary.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/ usr/lib/python3.13/dist-packages/mmtbx/regression/model/__init__.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_2.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_merge.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_mtrix.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_ncs.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_pairs_within.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_symmetry.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py usr/lib/python3.13/dist-packages/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/ usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/__init__.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py usr/lib/python3.13/dist-packages/mmtbx/regression/ncs/tst_restraints.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/ usr/lib/python3.13/dist-packages/mmtbx/regression/tls/__init__.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_tls.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_tls_utils.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py usr/lib/python3.13/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py usr/lib/python3.13/dist-packages/mmtbx/ringer/ usr/lib/python3.13/dist-packages/mmtbx/ringer/__init__.py usr/lib/python3.13/dist-packages/mmtbx/ringer/em_rolling.py usr/lib/python3.13/dist-packages/mmtbx/ringer/em_rscc.py usr/lib/python3.13/dist-packages/mmtbx/ringer/em_scoring.py usr/lib/python3.13/dist-packages/mmtbx/ringer/emringer.py usr/lib/python3.13/dist-packages/mmtbx/ringer/tst_em_rscc.py usr/lib/python3.13/dist-packages/mmtbx/ringer/tst_emringer.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/ usr/lib/python3.13/dist-packages/mmtbx/rotamer/__init__.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/graphics.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/n_dim_table.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/nqh.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/ramachandran_eval.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/rotamer_eval.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/sidechain_angles.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py usr/lib/python3.13/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py usr/lib/python3.13/dist-packages/mmtbx/rsr/ usr/lib/python3.13/dist-packages/mmtbx/rsr/__init__.py usr/lib/python3.13/dist-packages/mmtbx/rsr/tst.py usr/lib/python3.13/dist-packages/mmtbx/scaling/ usr/lib/python3.13/dist-packages/mmtbx/scaling/__init__.py usr/lib/python3.13/dist-packages/mmtbx/scaling/absence_likelihood.py usr/lib/python3.13/dist-packages/mmtbx/scaling/absences.py usr/lib/python3.13/dist-packages/mmtbx/scaling/absolute_scaling.py usr/lib/python3.13/dist-packages/mmtbx/scaling/basic_analyses.py usr/lib/python3.13/dist-packages/mmtbx/scaling/bayesian_estimator.py usr/lib/python3.13/dist-packages/mmtbx/scaling/data_statistics.py usr/lib/python3.13/dist-packages/mmtbx/scaling/fa_estimation.py usr/lib/python3.13/dist-packages/mmtbx/scaling/make_param.py usr/lib/python3.13/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py usr/lib/python3.13/dist-packages/mmtbx/scaling/matthews.py usr/lib/python3.13/dist-packages/mmtbx/scaling/mean_f_rms_f.py usr/lib/python3.13/dist-packages/mmtbx/scaling/outlier_plots.py usr/lib/python3.13/dist-packages/mmtbx/scaling/outlier_rejection.py usr/lib/python3.13/dist-packages/mmtbx/scaling/pair_analyses.py usr/lib/python3.13/dist-packages/mmtbx/scaling/plan_sad_experiment.py usr/lib/python3.13/dist-packages/mmtbx/scaling/pre_scale.py usr/lib/python3.13/dist-packages/mmtbx/scaling/random_omit.py usr/lib/python3.13/dist-packages/mmtbx/scaling/relative_scaling.py usr/lib/python3.13/dist-packages/mmtbx/scaling/relative_wilson.py usr/lib/python3.13/dist-packages/mmtbx/scaling/remove_outliers.py usr/lib/python3.13/dist-packages/mmtbx/scaling/sigmaa_estimation.py usr/lib/python3.13/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py usr/lib/python3.13/dist-packages/mmtbx/scaling/thorough_outlier_test.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_absences.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_massage_data.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_outlier.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_scaling.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_sigmaa.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_xtriage.py usr/lib/python3.13/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py usr/lib/python3.13/dist-packages/mmtbx/scaling/twin_analyses.py usr/lib/python3.13/dist-packages/mmtbx/scaling/twmad_scale.py usr/lib/python3.13/dist-packages/mmtbx/scaling/xtriage.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/ usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/__init__.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/nucleic_acids.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/proteins.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/ss_validation.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/tst.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/tst_segid.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/utils.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/build/ usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/build/__init__.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/build/tst_1.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/build/tst_2.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/build/tst_3.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/build/tst_io.py usr/lib/python3.13/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py usr/lib/python3.13/dist-packages/mmtbx/sisa/ usr/lib/python3.13/dist-packages/mmtbx/sisa/__init__.py usr/lib/python3.13/dist-packages/mmtbx/sisa/optimize/ usr/lib/python3.13/dist-packages/mmtbx/sisa/optimize/__init__.py usr/lib/python3.13/dist-packages/mmtbx/sisa/optimize/mod_ga.py usr/lib/python3.13/dist-packages/mmtbx/sisa/optimize/mod_input.py usr/lib/python3.13/dist-packages/mmtbx/sisa/optimize/mod_masks.py usr/lib/python3.13/dist-packages/mmtbx/sisa/optimize/mod_mtz.py usr/lib/python3.13/dist-packages/mmtbx/sisa/optimize/mod_optimize.py usr/lib/python3.13/dist-packages/mmtbx/sisa/optimize/mod_util.py usr/lib/python3.13/dist-packages/mmtbx/solvent/ usr/lib/python3.13/dist-packages/mmtbx/solvent/__init__.py usr/lib/python3.13/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py usr/lib/python3.13/dist-packages/mmtbx/solvent/map_to_water.py usr/lib/python3.13/dist-packages/mmtbx/solvent/ordered_solvent.py usr/lib/python3.13/dist-packages/mmtbx/suitename/ usr/lib/python3.13/dist-packages/mmtbx/suitename/__init__.py usr/lib/python3.13/dist-packages/mmtbx/suitename/diangle.py usr/lib/python3.13/dist-packages/mmtbx/suitename/dualparse.py usr/lib/python3.13/dist-packages/mmtbx/suitename/mainchain.py usr/lib/python3.13/dist-packages/mmtbx/suitename/suitealyze.py usr/lib/python3.13/dist-packages/mmtbx/suitename/suitename.py usr/lib/python3.13/dist-packages/mmtbx/suitename/suitenamedefs.py usr/lib/python3.13/dist-packages/mmtbx/suitename/suiteninit.py usr/lib/python3.13/dist-packages/mmtbx/suitename/suiteninput.py usr/lib/python3.13/dist-packages/mmtbx/suitename/suitenout.py usr/lib/python3.13/dist-packages/mmtbx/suitename/suites.py usr/lib/python3.13/dist-packages/mmtbx/suitename/transdent.py usr/lib/python3.13/dist-packages/mmtbx/tls/ usr/lib/python3.13/dist-packages/mmtbx/tls/__init__.py usr/lib/python3.13/dist-packages/mmtbx/tls/analysis.py usr/lib/python3.13/dist-packages/mmtbx/tls/command_line.py usr/lib/python3.13/dist-packages/mmtbx/tls/decompose.py usr/lib/python3.13/dist-packages/mmtbx/tls/ladp.py usr/lib/python3.13/dist-packages/mmtbx/tls/optimise_amplitudes.py usr/lib/python3.13/dist-packages/mmtbx/tls/perm10.py usr/lib/python3.13/dist-packages/mmtbx/tls/perm11.py usr/lib/python3.13/dist-packages/mmtbx/tls/perm12.py usr/lib/python3.13/dist-packages/mmtbx/tls/perm13.py usr/lib/python3.13/dist-packages/mmtbx/tls/perm14.py usr/lib/python3.13/dist-packages/mmtbx/tls/perm15.py usr/lib/python3.13/dist-packages/mmtbx/tls/tls_as_xyz.py usr/lib/python3.13/dist-packages/mmtbx/tls/tools.py usr/lib/python3.13/dist-packages/mmtbx/tls/utils.py usr/lib/python3.13/dist-packages/mmtbx/twinning/ usr/lib/python3.13/dist-packages/mmtbx/twinning/__init__.py usr/lib/python3.13/dist-packages/mmtbx/twinning/probabalistic_detwinning.py usr/lib/python3.13/dist-packages/mmtbx/twinning/twin_f_model.py usr/lib/python3.13/dist-packages/mmtbx/utils/ usr/lib/python3.13/dist-packages/mmtbx/utils/__init__.py usr/lib/python3.13/dist-packages/mmtbx/utils/fab_elbow_angle.py usr/lib/python3.13/dist-packages/mmtbx/utils/grid2d.py usr/lib/python3.13/dist-packages/mmtbx/utils/ntc.py usr/lib/python3.13/dist-packages/mmtbx/utils/rotatable_bonds.py usr/lib/python3.13/dist-packages/mmtbx/utils/tst_switch_rotamers.py usr/lib/python3.13/dist-packages/mmtbx/validation/ usr/lib/python3.13/dist-packages/mmtbx/validation/__init__.py usr/lib/python3.13/dist-packages/mmtbx/validation/analyze_peptides.py usr/lib/python3.13/dist-packages/mmtbx/validation/barbed_wire_analysis.py usr/lib/python3.13/dist-packages/mmtbx/validation/cablam.py usr/lib/python3.13/dist-packages/mmtbx/validation/cbd_utils.py usr/lib/python3.13/dist-packages/mmtbx/validation/cbetadev.py usr/lib/python3.13/dist-packages/mmtbx/validation/chain_comparison.py usr/lib/python3.13/dist-packages/mmtbx/validation/clashscore.py usr/lib/python3.13/dist-packages/mmtbx/validation/clashscore2.py usr/lib/python3.13/dist-packages/mmtbx/validation/comparama.py usr/lib/python3.13/dist-packages/mmtbx/validation/comprehensive_residue.py usr/lib/python3.13/dist-packages/mmtbx/validation/convert_lists.py usr/lib/python3.13/dist-packages/mmtbx/validation/datasets.py usr/lib/python3.13/dist-packages/mmtbx/validation/ensembles.py usr/lib/python3.13/dist-packages/mmtbx/validation/experimental.py usr/lib/python3.13/dist-packages/mmtbx/validation/fav_lists.py usr/lib/python3.13/dist-packages/mmtbx/validation/graphics.py usr/lib/python3.13/dist-packages/mmtbx/validation/holton_geometry_validation.py usr/lib/python3.13/dist-packages/mmtbx/validation/ligands.py usr/lib/python3.13/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py usr/lib/python3.13/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py usr/lib/python3.13/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py usr/lib/python3.13/dist-packages/mmtbx/validation/model_properties.py usr/lib/python3.13/dist-packages/mmtbx/validation/mp_validate_bonds.py usr/lib/python3.13/dist-packages/mmtbx/validation/omegalyze.py usr/lib/python3.13/dist-packages/mmtbx/validation/phi_psi_2_data.py usr/lib/python3.13/dist-packages/mmtbx/validation/rama_z.py usr/lib/python3.13/dist-packages/mmtbx/validation/ramalyze.py usr/lib/python3.13/dist-packages/mmtbx/validation/restraints.py usr/lib/python3.13/dist-packages/mmtbx/validation/rna_validate.py usr/lib/python3.13/dist-packages/mmtbx/validation/rotalyze.py usr/lib/python3.13/dist-packages/mmtbx/validation/sequence.py usr/lib/python3.13/dist-packages/mmtbx/validation/undowser.py usr/lib/python3.13/dist-packages/mmtbx/validation/undowser2.py usr/lib/python3.13/dist-packages/mmtbx/validation/utils.py usr/lib/python3.13/dist-packages/mmtbx/validation/validate_ligands.py usr/lib/python3.13/dist-packages/mmtbx/validation/waters.py usr/lib/python3.13/dist-packages/mmtbx/validation/molprobity/ usr/lib/python3.13/dist-packages/mmtbx/validation/molprobity/__init__.py usr/lib/python3.13/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py usr/lib/python3.13/dist-packages/mmtbx/validation/molprobity/mp_geo.py usr/lib/python3.13/dist-packages/mmtbx/validation/molprobity/percentile_clashscore.py usr/lib/python3.13/dist-packages/mmtbx/validation/molprobity/percentile_mpscore.py usr/lib/python3.13/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py usr/lib/python3.13/dist-packages/mmtbx/validation/molprobity/table_from_json.py usr/lib/python3.13/dist-packages/mmtbx/validation/ramachandran/ usr/lib/python3.13/dist-packages/mmtbx/validation/ramachandran/__init__.py usr/lib/python3.13/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/ usr/lib/python3.13/dist-packages/mmtbx/validation/regression/__init__.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/run_restraints.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_cablam.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_cablam_2.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_cbetadev.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_clashscore.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_experimental.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_model_properties.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_mp_geo.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_omegalyze.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_ramalyze.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_ramalyze_rare.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_restraints.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_rna_validate.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_rotalyze.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_suitename.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_undowser.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_undowser2.py usr/lib/python3.13/dist-packages/mmtbx/validation/regression/tst_waters.py usr/lib/python3.13/dist-packages/mmtbx/wwpdb/ usr/lib/python3.13/dist-packages/mmtbx/wwpdb/__init__.py usr/lib/python3.13/dist-packages/mmtbx/wwpdb/rcsb_entry_request.py usr/lib/python3.13/dist-packages/mmtbx/wwpdb/rcsb_web_services.py usr/lib/python3.13/dist-packages/mmtbx/wwpdb/tst_rcsb_entry_request.py usr/lib/python3.13/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py usr/lib/python3.13/dist-packages/omptbx/ usr/lib/python3.13/dist-packages/omptbx/__init__.py usr/lib/python3.13/dist-packages/omptbx/tst.py usr/lib/python3.13/dist-packages/qttbx/ usr/lib/python3.13/dist-packages/qttbx/__init__.py usr/lib/python3.13/dist-packages/qttbx/phil.py usr/lib/python3.13/dist-packages/qttbx/viewers/ usr/lib/python3.13/dist-packages/qttbx/viewers/__init__.py usr/lib/python3.13/dist-packages/qttbx/viewers/chimerax.py usr/lib/python3.13/dist-packages/rstbx/ usr/lib/python3.13/dist-packages/rstbx/__init__.py usr/lib/python3.13/dist-packages/rstbx/run_tests.py usr/lib/python3.13/dist-packages/rstbx/utils.py usr/lib/python3.13/dist-packages/rstbx/apps/ usr/lib/python3.13/dist-packages/rstbx/apps/__init__.py usr/lib/python3.13/dist-packages/rstbx/apps/dual_resolution_helpers.py usr/lib/python3.13/dist-packages/rstbx/apps/slip_helpers.py usr/lib/python3.13/dist-packages/rstbx/apps/spot_markup.py usr/lib/python3.13/dist-packages/rstbx/apps/stills/ usr/lib/python3.13/dist-packages/rstbx/apps/stills/__init__.py usr/lib/python3.13/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py usr/lib/python3.13/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py usr/lib/python3.13/dist-packages/rstbx/apps/stills/simple_integration.py usr/lib/python3.13/dist-packages/rstbx/apps/stills/stills_integration.py usr/lib/python3.13/dist-packages/rstbx/apps/stills/util.py usr/lib/python3.13/dist-packages/rstbx/array_family/ usr/lib/python3.13/dist-packages/rstbx/array_family/__init__.py usr/lib/python3.13/dist-packages/rstbx/array_family/flex.py usr/lib/python3.13/dist-packages/rstbx/bandpass/ usr/lib/python3.13/dist-packages/rstbx/bandpass/__init__.py usr/lib/python3.13/dist-packages/rstbx/bandpass/simulated_annealing.py usr/lib/python3.13/dist-packages/rstbx/bpcx/ usr/lib/python3.13/dist-packages/rstbx/bpcx/__init__.py usr/lib/python3.13/dist-packages/rstbx/bpcx/compare_mosflm_xds.py usr/lib/python3.13/dist-packages/rstbx/bpcx/ersatz_misset.py usr/lib/python3.13/dist-packages/rstbx/bpcx/uc1_2.py usr/lib/python3.13/dist-packages/rstbx/bpcx/uc1_2_positions.py usr/lib/python3.13/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py usr/lib/python3.13/dist-packages/rstbx/bpcx/uc1_2_validate.py usr/lib/python3.13/dist-packages/rstbx/bpcx/uc1_2a.py usr/lib/python3.13/dist-packages/rstbx/bpcx/detector_model/ usr/lib/python3.13/dist-packages/rstbx/bpcx/detector_model/__init__.py usr/lib/python3.13/dist-packages/rstbx/bpcx/detector_model/detector.py usr/lib/python3.13/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py usr/lib/python3.13/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py usr/lib/python3.13/dist-packages/rstbx/cftbx/ usr/lib/python3.13/dist-packages/rstbx/cftbx/__init__.py usr/lib/python3.13/dist-packages/rstbx/cftbx/coordinate_frame_converter.py usr/lib/python3.13/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py usr/lib/python3.13/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py usr/lib/python3.13/dist-packages/rstbx/command_line/ usr/lib/python3.13/dist-packages/rstbx/command_line/__init__.py usr/lib/python3.13/dist-packages/rstbx/command_line/example_viewer.py usr/lib/python3.13/dist-packages/rstbx/command_line/index.py usr/lib/python3.13/dist-packages/rstbx/command_line/simage.create.py usr/lib/python3.13/dist-packages/rstbx/command_line/simage.explore_completeness.py usr/lib/python3.13/dist-packages/rstbx/command_line/simage.solver.py usr/lib/python3.13/dist-packages/rstbx/command_line/simage.wx_display.py usr/lib/python3.13/dist-packages/rstbx/command_line/slip_viewer.py usr/lib/python3.13/dist-packages/rstbx/command_line/viewer.py usr/lib/python3.13/dist-packages/rstbx/detectors/ usr/lib/python3.13/dist-packages/rstbx/detectors/__init__.py usr/lib/python3.13/dist-packages/rstbx/detectors/silicon.py usr/lib/python3.13/dist-packages/rstbx/dials_core/ usr/lib/python3.13/dist-packages/rstbx/dials_core/__init__.py usr/lib/python3.13/dist-packages/rstbx/dials_core/integration_core.py usr/lib/python3.13/dist-packages/rstbx/diffraction/ usr/lib/python3.13/dist-packages/rstbx/diffraction/__init__.py usr/lib/python3.13/dist-packages/rstbx/diffraction/tst_ewald_sphere.py usr/lib/python3.13/dist-packages/rstbx/diffraction/tst_partial_derivatives.py usr/lib/python3.13/dist-packages/rstbx/diffraction/tst_predict.py usr/lib/python3.13/dist-packages/rstbx/diffraction/fastbragg/ usr/lib/python3.13/dist-packages/rstbx/diffraction/fastbragg/__init__.py usr/lib/python3.13/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py usr/lib/python3.13/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py usr/lib/python3.13/dist-packages/rstbx/dps_core/ usr/lib/python3.13/dist-packages/rstbx/dps_core/__init__.py usr/lib/python3.13/dist-packages/rstbx/dps_core/basis_choice.py usr/lib/python3.13/dist-packages/rstbx/dps_core/cell_assessment.py usr/lib/python3.13/dist-packages/rstbx/dps_core/constrainment.py usr/lib/python3.13/dist-packages/rstbx/dps_core/lepage.py usr/lib/python3.13/dist-packages/rstbx/dps_core/sampling.py usr/lib/python3.13/dist-packages/rstbx/dps_core/tst_iotbx_converter.py usr/lib/python3.13/dist-packages/rstbx/dps_core/zuoreduction.py usr/lib/python3.13/dist-packages/rstbx/indexing/ usr/lib/python3.13/dist-packages/rstbx/indexing/__init__.py usr/lib/python3.13/dist-packages/rstbx/indexing/do_index.py usr/lib/python3.13/dist-packages/rstbx/indexing/tst_auto_monoscan.py usr/lib/python3.13/dist-packages/rstbx/indexing/tst_dataset1.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/ usr/lib/python3.13/dist-packages/rstbx/indexing_api/__init__.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/basis_choice.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/force_cell.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/lattice.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/nearest_neighbor.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/outlier_detection.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/outlier_procedure.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/sampling.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/test_dps.py usr/lib/python3.13/dist-packages/rstbx/indexing_api/tools.py usr/lib/python3.13/dist-packages/rstbx/new_horizons/ usr/lib/python3.13/dist-packages/rstbx/new_horizons/__init__.py usr/lib/python3.13/dist-packages/rstbx/new_horizons/index.py usr/lib/python3.13/dist-packages/rstbx/new_horizons/oscillation_shots.py usr/lib/python3.13/dist-packages/rstbx/new_horizons/pixel_spread.py usr/lib/python3.13/dist-packages/rstbx/new_horizons/speckfinder.py usr/lib/python3.13/dist-packages/rstbx/new_horizons/spot_shape.py usr/lib/python3.13/dist-packages/rstbx/new_horizons/stats_index.py usr/lib/python3.13/dist-packages/rstbx/outlier_spots/ usr/lib/python3.13/dist-packages/rstbx/outlier_spots/__init__.py usr/lib/python3.13/dist-packages/rstbx/outlier_spots/fit_distribution.py usr/lib/python3.13/dist-packages/rstbx/phil/ usr/lib/python3.13/dist-packages/rstbx/phil/__init__.py usr/lib/python3.13/dist-packages/rstbx/phil/phil_preferences.py usr/lib/python3.13/dist-packages/rstbx/phil/preferences.py usr/lib/python3.13/dist-packages/rstbx/phil/scope.py usr/lib/python3.13/dist-packages/rstbx/simage/ usr/lib/python3.13/dist-packages/rstbx/simage/__init__.py usr/lib/python3.13/dist-packages/rstbx/simage/create.py usr/lib/python3.13/dist-packages/rstbx/simage/explore_completeness.py usr/lib/python3.13/dist-packages/rstbx/simage/integrate_crude.py usr/lib/python3.13/dist-packages/rstbx/simage/refine_uc_cr.py usr/lib/python3.13/dist-packages/rstbx/simage/run_labelit_index.py usr/lib/python3.13/dist-packages/rstbx/simage/run_spotfinder.py usr/lib/python3.13/dist-packages/rstbx/simage/solver.py usr/lib/python3.13/dist-packages/rstbx/simage/tst.py usr/lib/python3.13/dist-packages/rstbx/simage/wx_display.py usr/lib/python3.13/dist-packages/rstbx/simulation/ usr/lib/python3.13/dist-packages/rstbx/simulation/__init__.py usr/lib/python3.13/dist-packages/rstbx/simulation/constants.py usr/lib/python3.13/dist-packages/rstbx/simulation/sim_pdf.py usr/lib/python3.13/dist-packages/rstbx/simulation/sim_utils.py usr/lib/python3.13/dist-packages/rstbx/simulation/tst_xfel1_simple.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/ usr/lib/python3.13/dist-packages/rstbx/slip_viewer/__init__.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/calibration_frame.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/frame.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/pyslip.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/ring_frame.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/score_frame.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/slip_display.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/tile_generation.py usr/lib/python3.13/dist-packages/rstbx/slip_viewer/uc_frame.py usr/lib/python3.13/dist-packages/rstbx/sublattice_support/ usr/lib/python3.13/dist-packages/rstbx/sublattice_support/__init__.py usr/lib/python3.13/dist-packages/rstbx/sublattice_support/change_basis.py usr/lib/python3.13/dist-packages/rstbx/sublattice_support/tst_sublattice.py usr/lib/python3.13/dist-packages/rstbx/symmetry/ usr/lib/python3.13/dist-packages/rstbx/symmetry/__init__.py usr/lib/python3.13/dist-packages/rstbx/symmetry/sgtbx_adaptor.py usr/lib/python3.13/dist-packages/rstbx/symmetry/subgroup.py usr/lib/python3.13/dist-packages/rstbx/symmetry/constraints/ usr/lib/python3.13/dist-packages/rstbx/symmetry/constraints/__init__.py usr/lib/python3.13/dist-packages/rstbx/symmetry/constraints/g_gradients.py usr/lib/python3.13/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py usr/lib/python3.13/dist-packages/rstbx/viewer/ usr/lib/python3.13/dist-packages/rstbx/viewer/__init__.py usr/lib/python3.13/dist-packages/rstbx/viewer/calibration.py usr/lib/python3.13/dist-packages/rstbx/viewer/calibration_frame.py usr/lib/python3.13/dist-packages/rstbx/viewer/controls.py usr/lib/python3.13/dist-packages/rstbx/viewer/dataset.py usr/lib/python3.13/dist-packages/rstbx/viewer/display.py usr/lib/python3.13/dist-packages/rstbx/viewer/drivers.py usr/lib/python3.13/dist-packages/rstbx/viewer/frame.py usr/lib/python3.13/dist-packages/rstbx/viewer/indexing.py usr/lib/python3.13/dist-packages/rstbx/viewer/integration.py usr/lib/python3.13/dist-packages/rstbx/viewer/pixels3d.py usr/lib/python3.13/dist-packages/rstbx/viewer/processing.py usr/lib/python3.13/dist-packages/rstbx/viewer/results_base.py usr/lib/python3.13/dist-packages/rstbx/viewer/spotfinder_frame.py usr/lib/python3.13/dist-packages/rstbx/viewer/spotfinder_wrap.py usr/lib/python3.13/dist-packages/rstbx/viewer/tst.py usr/lib/python3.13/dist-packages/scitbx/ usr/lib/python3.13/dist-packages/scitbx/__init__.py usr/lib/python3.13/dist-packages/scitbx/cross_entropy.py usr/lib/python3.13/dist-packages/scitbx/cubicle_neighbors.py usr/lib/python3.13/dist-packages/scitbx/differential_evolution.py usr/lib/python3.13/dist-packages/scitbx/direct_search_simulated_annealing.py usr/lib/python3.13/dist-packages/scitbx/fftpack.py usr/lib/python3.13/dist-packages/scitbx/genetic_algorithm_with_mp.py usr/lib/python3.13/dist-packages/scitbx/golden_section_search.py usr/lib/python3.13/dist-packages/scitbx/lbfgsb.py usr/lib/python3.13/dist-packages/scitbx/libtbx_refresh.py usr/lib/python3.13/dist-packages/scitbx/minimizers.py usr/lib/python3.13/dist-packages/scitbx/minpack.py usr/lib/python3.13/dist-packages/scitbx/r3_utils.py usr/lib/python3.13/dist-packages/scitbx/regular_grid_on_unit_sphere.py usr/lib/python3.13/dist-packages/scitbx/restraints.py usr/lib/python3.13/dist-packages/scitbx/run_tests.py usr/lib/python3.13/dist-packages/scitbx/simplex.py usr/lib/python3.13/dist-packages/scitbx/smoothing.py usr/lib/python3.13/dist-packages/scitbx/array_family/ usr/lib/python3.13/dist-packages/scitbx/array_family/__init__.py usr/lib/python3.13/dist-packages/scitbx/array_family/flex.py usr/lib/python3.13/dist-packages/scitbx/array_family/shared.py usr/lib/python3.13/dist-packages/scitbx/array_family/accessors/ usr/lib/python3.13/dist-packages/scitbx/array_family/accessors/__init__.py usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/ usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/__init__.py usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/regression_test.py usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/tst_flex.py usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/tst_shared.py usr/lib/python3.13/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py usr/lib/python3.13/dist-packages/scitbx/array_family/detail/ usr/lib/python3.13/dist-packages/scitbx/array_family/detail/__init__.py usr/lib/python3.13/dist-packages/scitbx/boost_python/ usr/lib/python3.13/dist-packages/scitbx/boost_python/__init__.py usr/lib/python3.13/dist-packages/scitbx/command_line/ usr/lib/python3.13/dist-packages/scitbx/command_line/__init__.py usr/lib/python3.13/dist-packages/scitbx/command_line/apply_tapenade_hints.py usr/lib/python3.13/dist-packages/scitbx/command_line/generate_error_h.py usr/lib/python3.13/dist-packages/scitbx/command_line/histogram.py usr/lib/python3.13/dist-packages/scitbx/command_line/show_exp_times.py usr/lib/python3.13/dist-packages/scitbx/command_line/show_sizes.py usr/lib/python3.13/dist-packages/scitbx/command_line/unicode_examples.py usr/lib/python3.13/dist-packages/scitbx/dtmin/ usr/lib/python3.13/dist-packages/scitbx/dtmin/__init__.py usr/lib/python3.13/dist-packages/scitbx/dtmin/auxiliary.py usr/lib/python3.13/dist-packages/scitbx/dtmin/bounds.py usr/lib/python3.13/dist-packages/scitbx/dtmin/compulsory.py usr/lib/python3.13/dist-packages/scitbx/dtmin/min_logging.py usr/lib/python3.13/dist-packages/scitbx/dtmin/minimizer.py usr/lib/python3.13/dist-packages/scitbx/dtmin/optional.py usr/lib/python3.13/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py usr/lib/python3.13/dist-packages/scitbx/dtmin/refinebase.py usr/lib/python3.13/dist-packages/scitbx/dtmin/reparams.py usr/lib/python3.13/dist-packages/scitbx/dtmin/twisted_gaussian.py usr/lib/python3.13/dist-packages/scitbx/dtmin/regression/ usr/lib/python3.13/dist-packages/scitbx/dtmin/regression/__init__.py usr/lib/python3.13/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py usr/lib/python3.13/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py usr/lib/python3.13/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py usr/lib/python3.13/dist-packages/scitbx/error/ usr/lib/python3.13/dist-packages/scitbx/error/__init__.py usr/lib/python3.13/dist-packages/scitbx/error/tst_error.py usr/lib/python3.13/dist-packages/scitbx/examples/ usr/lib/python3.13/dist-packages/scitbx/examples/__init__.py usr/lib/python3.13/dist-packages/scitbx/examples/bootstrap.py usr/lib/python3.13/dist-packages/scitbx/examples/chebyshev_lsq_example.py usr/lib/python3.13/dist-packages/scitbx/examples/flex_array_loops.py usr/lib/python3.13/dist-packages/scitbx/examples/flex_grid.py usr/lib/python3.13/dist-packages/scitbx/examples/functions.py usr/lib/python3.13/dist-packages/scitbx/examples/immoptibox_ports.py usr/lib/python3.13/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py usr/lib/python3.13/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py usr/lib/python3.13/dist-packages/scitbx/examples/lbfgs_recipe.py usr/lib/python3.13/dist-packages/scitbx/examples/minimizer_comparisons.py usr/lib/python3.13/dist-packages/scitbx/examples/principal_axes_of_inertia.py usr/lib/python3.13/dist-packages/scitbx/examples/rigid_body_refinement_core.py usr/lib/python3.13/dist-packages/scitbx/examples/bevington/ usr/lib/python3.13/dist-packages/scitbx/examples/bevington/__init__.py usr/lib/python3.13/dist-packages/scitbx/examples/bevington/silver.py usr/lib/python3.13/dist-packages/scitbx/glmtbx/ usr/lib/python3.13/dist-packages/scitbx/glmtbx/__init__.py usr/lib/python3.13/dist-packages/scitbx/glmtbx/boost_python/ usr/lib/python3.13/dist-packages/scitbx/glmtbx/boost_python/__init__.py usr/lib/python3.13/dist-packages/scitbx/glmtbx/tests/ usr/lib/python3.13/dist-packages/scitbx/glmtbx/tests/__init__.py usr/lib/python3.13/dist-packages/scitbx/glmtbx/tests/tst.py usr/lib/python3.13/dist-packages/scitbx/graph/ usr/lib/python3.13/dist-packages/scitbx/graph/__init__.py usr/lib/python3.13/dist-packages/scitbx/graph/rigidity.py usr/lib/python3.13/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py usr/lib/python3.13/dist-packages/scitbx/graph/tardy_tree.py usr/lib/python3.13/dist-packages/scitbx/graph/test_cases_tardy_pdb.py usr/lib/python3.13/dist-packages/scitbx/graph/tst_rigidity.py usr/lib/python3.13/dist-packages/scitbx/graph/tst_tardy_tree.py usr/lib/python3.13/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py usr/lib/python3.13/dist-packages/scitbx/graph/tst_utils.py usr/lib/python3.13/dist-packages/scitbx/graph/utils.py usr/lib/python3.13/dist-packages/scitbx/graphics_utils/ usr/lib/python3.13/dist-packages/scitbx/graphics_utils/__init__.py usr/lib/python3.13/dist-packages/scitbx/graphics_utils/tst.py usr/lib/python3.13/dist-packages/scitbx/iso_surface/ usr/lib/python3.13/dist-packages/scitbx/iso_surface/__init__.py usr/lib/python3.13/dist-packages/scitbx/iso_surface/tst_iso_surface.py usr/lib/python3.13/dist-packages/scitbx/lbfgs/ usr/lib/python3.13/dist-packages/scitbx/lbfgs/__init__.py usr/lib/python3.13/dist-packages/scitbx/lbfgs/tst_curvatures.py usr/lib/python3.13/dist-packages/scitbx/lbfgs/tst_ext.py usr/lib/python3.13/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py usr/lib/python3.13/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py usr/lib/python3.13/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py usr/lib/python3.13/dist-packages/scitbx/lbfgs/dev/ usr/lib/python3.13/dist-packages/scitbx/lbfgs/dev/__init__.py usr/lib/python3.13/dist-packages/scitbx/lbfgs/dev/run.py usr/lib/python3.13/dist-packages/scitbx/lbfgs/dev/twisted_gaussian.py usr/lib/python3.13/dist-packages/scitbx/linalg/ usr/lib/python3.13/dist-packages/scitbx/linalg/__init__.py usr/lib/python3.13/dist-packages/scitbx/linalg/eigensystem.py usr/lib/python3.13/dist-packages/scitbx/linalg/ext.py usr/lib/python3.13/dist-packages/scitbx/linalg/householder.py usr/lib/python3.13/dist-packages/scitbx/linalg/svd.py usr/lib/python3.13/dist-packages/scitbx/linalg/boost_python/ usr/lib/python3.13/dist-packages/scitbx/linalg/boost_python/__init__.py usr/lib/python3.13/dist-packages/scitbx/linalg/tests/ usr/lib/python3.13/dist-packages/scitbx/linalg/tests/__init__.py usr/lib/python3.13/dist-packages/scitbx/linalg/tests/tst_cholesky.py usr/lib/python3.13/dist-packages/scitbx/linalg/tests/tst_eigensystem.py usr/lib/python3.13/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py usr/lib/python3.13/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py usr/lib/python3.13/dist-packages/scitbx/linalg/tests/tst_matrix.py usr/lib/python3.13/dist-packages/scitbx/linalg/tests/tst_svd.py usr/lib/python3.13/dist-packages/scitbx/line_search/ usr/lib/python3.13/dist-packages/scitbx/line_search/__init__.py usr/lib/python3.13/dist-packages/scitbx/lstbx/ usr/lib/python3.13/dist-packages/scitbx/lstbx/__init__.py usr/lib/python3.13/dist-packages/scitbx/lstbx/normal_eqns.py usr/lib/python3.13/dist-packages/scitbx/lstbx/normal_eqns_solving.py usr/lib/python3.13/dist-packages/scitbx/lstbx/benchmarks/ usr/lib/python3.13/dist-packages/scitbx/lstbx/benchmarks/__init__.py usr/lib/python3.13/dist-packages/scitbx/lstbx/boost_python/ usr/lib/python3.13/dist-packages/scitbx/lstbx/boost_python/__init__.py usr/lib/python3.13/dist-packages/scitbx/lstbx/tests/ usr/lib/python3.13/dist-packages/scitbx/lstbx/tests/__init__.py usr/lib/python3.13/dist-packages/scitbx/lstbx/tests/test_problems.py usr/lib/python3.13/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py usr/lib/python3.13/dist-packages/scitbx/math/ usr/lib/python3.13/dist-packages/scitbx/math/__init__.py usr/lib/python3.13/dist-packages/scitbx/math/besselk.py usr/lib/python3.13/dist-packages/scitbx/math/breakpoint.py usr/lib/python3.13/dist-packages/scitbx/math/chebyshev_lsq_fit.py usr/lib/python3.13/dist-packages/scitbx/math/clustering.py usr/lib/python3.13/dist-packages/scitbx/math/cubic_spline.py usr/lib/python3.13/dist-packages/scitbx/math/curve_fitting.py usr/lib/python3.13/dist-packages/scitbx/math/des_3_100_13.py usr/lib/python3.13/dist-packages/scitbx/math/des_3_240_21.py usr/lib/python3.13/dist-packages/scitbx/math/distributions.py usr/lib/python3.13/dist-packages/scitbx/math/euler_angles.py usr/lib/python3.13/dist-packages/scitbx/math/ext.py usr/lib/python3.13/dist-packages/scitbx/math/farey.py usr/lib/python3.13/dist-packages/scitbx/math/fit_peak.py usr/lib/python3.13/dist-packages/scitbx/math/fit_quadratic_function.py usr/lib/python3.13/dist-packages/scitbx/math/fliege_mayer_400.py usr/lib/python3.13/dist-packages/scitbx/math/fliege_mayer_900.py usr/lib/python3.13/dist-packages/scitbx/math/fliege_mayer_900_ylm.py usr/lib/python3.13/dist-packages/scitbx/math/gaussian.py usr/lib/python3.13/dist-packages/scitbx/math/gaussian_fit.py usr/lib/python3.13/dist-packages/scitbx/math/gumbel.py usr/lib/python3.13/dist-packages/scitbx/math/incremental_SO3_sampling.py usr/lib/python3.13/dist-packages/scitbx/math/lefebvre.py usr/lib/python3.13/dist-packages/scitbx/math/minimum_covering_ellipsoid.py usr/lib/python3.13/dist-packages/scitbx/math/multiple_superposition.py usr/lib/python3.13/dist-packages/scitbx/math/periodogram.py usr/lib/python3.13/dist-packages/scitbx/math/scale_curves.py usr/lib/python3.13/dist-packages/scitbx/math/sieve_of_eratosthenes.py usr/lib/python3.13/dist-packages/scitbx/math/so3_lie_algebra.py usr/lib/python3.13/dist-packages/scitbx/math/spe.py usr/lib/python3.13/dist-packages/scitbx/math/sphere_sphere_intersection.py usr/lib/python3.13/dist-packages/scitbx/math/superpose.py usr/lib/python3.13/dist-packages/scitbx/math/tst_2d_zernike.py usr/lib/python3.13/dist-packages/scitbx/math/tst_bessel_zeros.py usr/lib/python3.13/dist-packages/scitbx/math/tst_multivariate_moments.py usr/lib/python3.13/dist-packages/scitbx/math/tst_so3_lie_algebra.py usr/lib/python3.13/dist-packages/scitbx/math/tst_undirected_graph.py usr/lib/python3.13/dist-packages/scitbx/math/tst_zernike.py usr/lib/python3.13/dist-packages/scitbx/math/tst_zernike_mom.py usr/lib/python3.13/dist-packages/scitbx/math/undirected_graph.py usr/lib/python3.13/dist-packages/scitbx/math/zernike_align_fft.py usr/lib/python3.13/dist-packages/scitbx/math/boost_python/ usr/lib/python3.13/dist-packages/scitbx/math/boost_python/__init__.py usr/lib/python3.13/dist-packages/scitbx/math/dev/ usr/lib/python3.13/dist-packages/scitbx/math/dev/__init__.py usr/lib/python3.13/dist-packages/scitbx/math/erf/ usr/lib/python3.13/dist-packages/scitbx/math/erf/__init__.py usr/lib/python3.13/dist-packages/scitbx/math/tests/ usr/lib/python3.13/dist-packages/scitbx/math/tests/__init__.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_angle_derivative.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_bessel.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_clustering.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_cubic_equation.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_curve_fitting.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_dmatrix.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_euler_angles.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_exp_functions.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_fit_peak.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_g_function.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_gaussian.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_gcd.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_halton.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_line_search.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_math.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_periodogram.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_quadrature.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_r3_rotation.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_resample.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_similarity_indices.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_superpose.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_tetrahedron.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py usr/lib/python3.13/dist-packages/scitbx/math/tests/tst_weighted_correlation.py usr/lib/python3.13/dist-packages/scitbx/matrix/ usr/lib/python3.13/dist-packages/scitbx/matrix/__init__.py usr/lib/python3.13/dist-packages/scitbx/matrix/row_echelon.py usr/lib/python3.13/dist-packages/scitbx/matrix/tests/ usr/lib/python3.13/dist-packages/scitbx/matrix/tests/__init__.py usr/lib/python3.13/dist-packages/scitbx/matrix/tests/tst_householder.py usr/lib/python3.13/dist-packages/scitbx/matrix/tests/tst_row_echelon.py usr/lib/python3.13/dist-packages/scitbx/misc/ usr/lib/python3.13/dist-packages/scitbx/misc/__init__.py usr/lib/python3.13/dist-packages/scitbx/python_utils/ usr/lib/python3.13/dist-packages/scitbx/python_utils/__init__.py usr/lib/python3.13/dist-packages/scitbx/python_utils/command_line.py usr/lib/python3.13/dist-packages/scitbx/python_utils/dicts.py usr/lib/python3.13/dist-packages/scitbx/python_utils/graph_tools.py usr/lib/python3.13/dist-packages/scitbx/python_utils/misc.py usr/lib/python3.13/dist-packages/scitbx/python_utils/random_transform.py usr/lib/python3.13/dist-packages/scitbx/python_utils/robust_statistics.py usr/lib/python3.13/dist-packages/scitbx/python_utils/signal_utils.py usr/lib/python3.13/dist-packages/scitbx/python_utils/tst_graph.py usr/lib/python3.13/dist-packages/scitbx/python_utils/tst_random_transform.py usr/lib/python3.13/dist-packages/scitbx/python_utils/tst_robust.py usr/lib/python3.13/dist-packages/scitbx/random/ usr/lib/python3.13/dist-packages/scitbx/random/__init__.py usr/lib/python3.13/dist-packages/scitbx/random/boost_python/ usr/lib/python3.13/dist-packages/scitbx/random/boost_python/__init__.py usr/lib/python3.13/dist-packages/scitbx/random/tests/ usr/lib/python3.13/dist-packages/scitbx/random/tests/__init__.py usr/lib/python3.13/dist-packages/scitbx/random/tests/tst_random.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/ usr/lib/python3.13/dist-packages/scitbx/rigid_body/__init__.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/tst.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/ usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/__init__.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/body_lib.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/featherstone.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/joint_lib.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/make_bundles.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/spatial_lib.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/tardy.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/tst_basic.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/tst_tardy.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/essence/wx_tardy.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/ usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/__init__.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/featherstone.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/joint_lib.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/test_simulation.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/test_utils.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/tst_molecules.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/tst_singular.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/utils.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py usr/lib/python3.13/dist-packages/scitbx/rigid_body/proto/wx_molecules.py usr/lib/python3.13/dist-packages/scitbx/serialization/ usr/lib/python3.13/dist-packages/scitbx/serialization/__init__.py usr/lib/python3.13/dist-packages/scitbx/slatec/ usr/lib/python3.13/dist-packages/scitbx/slatec/__init__.py usr/lib/python3.13/dist-packages/scitbx/source_generators/ usr/lib/python3.13/dist-packages/scitbx/source_generators/__init__.py usr/lib/python3.13/dist-packages/scitbx/source_generators/flex_fwd_h.py usr/lib/python3.13/dist-packages/scitbx/source_generators/lbfgs_fem.py usr/lib/python3.13/dist-packages/scitbx/source_generators/utils.py usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/ usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/__init__.py usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/generate_algebras.py usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/generate_all.py usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/generate_apply.py usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/generate_reductions.py usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py usr/lib/python3.13/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py usr/lib/python3.13/dist-packages/scitbx/sparse/ usr/lib/python3.13/dist-packages/scitbx/sparse/__init__.py usr/lib/python3.13/dist-packages/scitbx/sparse/boost_python/ usr/lib/python3.13/dist-packages/scitbx/sparse/boost_python/__init__.py usr/lib/python3.13/dist-packages/scitbx/sparse/tests/ usr/lib/python3.13/dist-packages/scitbx/sparse/tests/__init__.py usr/lib/python3.13/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py usr/lib/python3.13/dist-packages/scitbx/sparse/tests/tst_sparse.py usr/lib/python3.13/dist-packages/scitbx/stdlib/ usr/lib/python3.13/dist-packages/scitbx/stdlib/__init__.py usr/lib/python3.13/dist-packages/scitbx/stl/ usr/lib/python3.13/dist-packages/scitbx/stl/__init__.py usr/lib/python3.13/dist-packages/scitbx/stl/map.py usr/lib/python3.13/dist-packages/scitbx/stl/set.py usr/lib/python3.13/dist-packages/scitbx/stl/tst_map.py usr/lib/python3.13/dist-packages/scitbx/stl/tst_set.py usr/lib/python3.13/dist-packages/scitbx/stl/tst_vector.py usr/lib/python3.13/dist-packages/scitbx/stl/vector.py usr/lib/python3.13/dist-packages/scitbx/suffixtree/ usr/lib/python3.13/dist-packages/scitbx/suffixtree/__init__.py usr/lib/python3.13/dist-packages/scitbx/suffixtree/single.py usr/lib/python3.13/dist-packages/scitbx/suffixtree/boost_python/ usr/lib/python3.13/dist-packages/scitbx/suffixtree/boost_python/__init__.py usr/lib/python3.13/dist-packages/scitbx/suffixtree/test/ usr/lib/python3.13/dist-packages/scitbx/suffixtree/test/__init__.py usr/lib/python3.13/dist-packages/scitbx/suffixtree/test/tst_single.py usr/lib/python3.13/dist-packages/scitbx/tests/ usr/lib/python3.13/dist-packages/scitbx/tests/__init__.py usr/lib/python3.13/dist-packages/scitbx/tests/differential_evolution.py usr/lib/python3.13/dist-packages/scitbx/tests/direct_search_simulated_annealing.py usr/lib/python3.13/dist-packages/scitbx/tests/golden_section_search.py usr/lib/python3.13/dist-packages/scitbx/tests/simplex.py usr/lib/python3.13/dist-packages/scitbx/tests/tst_basic.py usr/lib/python3.13/dist-packages/scitbx/tests/tst_cubicle_neighbors.py usr/lib/python3.13/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py usr/lib/python3.13/dist-packages/scitbx/tests/tst_minimizer_lbfgs_general.py usr/lib/python3.13/dist-packages/scitbx/tests/tst_r3_utils.py usr/lib/python3.13/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py usr/lib/python3.13/dist-packages/scitbx/tests/tst_smoothing.py usr/lib/python3.13/dist-packages/scitbx/wigner/ usr/lib/python3.13/dist-packages/scitbx/wigner/__init__.py usr/lib/python3.13/dist-packages/scitbx/wigner/tst_wigner3j.py usr/lib/python3.13/dist-packages/serialtbx/ usr/lib/python3.13/dist-packages/serialtbx/__init__.py usr/lib/python3.13/dist-packages/serialtbx/detector/ usr/lib/python3.13/dist-packages/serialtbx/detector/__init__.py usr/lib/python3.13/dist-packages/serialtbx/detector/cspad.py usr/lib/python3.13/dist-packages/serialtbx/detector/jungfrau.py usr/lib/python3.13/dist-packages/serialtbx/detector/rayonix.py usr/lib/python3.13/dist-packages/serialtbx/detector/xtc.py usr/lib/python3.13/dist-packages/serialtbx/detector/legacy_metrology/ usr/lib/python3.13/dist-packages/serialtbx/detector/legacy_metrology/__init__.py usr/lib/python3.13/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py usr/lib/python3.13/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py usr/lib/python3.13/dist-packages/serialtbx/detector/legacy_metrology/metrology.py usr/lib/python3.13/dist-packages/serialtbx/mono_simulation/ usr/lib/python3.13/dist-packages/serialtbx/mono_simulation/__init__.py usr/lib/python3.13/dist-packages/serialtbx/mono_simulation/max_like.py usr/lib/python3.13/dist-packages/serialtbx/mono_simulation/util.py usr/lib/python3.13/dist-packages/serialtbx/util/ usr/lib/python3.13/dist-packages/serialtbx/util/__init__.py usr/lib/python3.13/dist-packages/serialtbx/util/construct_frame.py usr/lib/python3.13/dist-packages/serialtbx/util/energy_scan_notch_finder.py usr/lib/python3.13/dist-packages/serialtbx/util/time.py usr/lib/python3.13/dist-packages/simtbx/ usr/lib/python3.13/dist-packages/simtbx/__init__.py usr/lib/python3.13/dist-packages/simtbx/run_tests.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/ usr/lib/python3.13/dist-packages/simtbx/diffBragg/__init__.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/attr_list.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/device.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/hopper_io.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/hopper_utils.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/mpi_logger.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/parameter_errors.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/phil.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/prep_stage2_input.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/psf.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/stage_two_utils.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/utils.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/ usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/__init__.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/base_refiner.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/geometry.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/parameters.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/crystal_systems/ usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py usr/lib/python3.13/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py usr/lib/python3.13/dist-packages/simtbx/gpu/ usr/lib/python3.13/dist-packages/simtbx/gpu/__init__.py usr/lib/python3.13/dist-packages/simtbx/gpu/tst_exafel_api.py usr/lib/python3.13/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py usr/lib/python3.13/dist-packages/simtbx/gpu/tst_shoeboxes.py usr/lib/python3.13/dist-packages/simtbx/kokkos/ usr/lib/python3.13/dist-packages/simtbx/kokkos/__init__.py usr/lib/python3.13/dist-packages/simtbx/kokkos/tst_kokkos_lib.py usr/lib/python3.13/dist-packages/simtbx/modeling/ usr/lib/python3.13/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py usr/lib/python3.13/dist-packages/simtbx/modeling/__init__.py usr/lib/python3.13/dist-packages/simtbx/modeling/forward_models.py usr/lib/python3.13/dist-packages/simtbx/modeling/predictions.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/ usr/lib/python3.13/dist-packages/simtbx/nanoBragg/__init__.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/nanoBragg_input.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/sim_data.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_multisource_background.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py usr/lib/python3.13/dist-packages/simtbx/nanoBragg/utils.py usr/lib/python3.13/dist-packages/simtbx/pixel/ usr/lib/python3.13/dist-packages/simtbx/pixel/__init__.py usr/lib/python3.13/dist-packages/smtbx/ usr/lib/python3.13/dist-packages/smtbx/__init__.py usr/lib/python3.13/dist-packages/smtbx/development.py usr/lib/python3.13/dist-packages/smtbx/libtbx_refresh.py usr/lib/python3.13/dist-packages/smtbx/run_tests.py usr/lib/python3.13/dist-packages/smtbx/utils.py usr/lib/python3.13/dist-packages/smtbx/ab_initio/ usr/lib/python3.13/dist-packages/smtbx/ab_initio/__init__.py usr/lib/python3.13/dist-packages/smtbx/ab_initio/charge_flipping.py usr/lib/python3.13/dist-packages/smtbx/ab_initio/tests/ usr/lib/python3.13/dist-packages/smtbx/ab_initio/tests/__init__.py usr/lib/python3.13/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py usr/lib/python3.13/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py usr/lib/python3.13/dist-packages/smtbx/absolute_structure/ usr/lib/python3.13/dist-packages/smtbx/absolute_structure/__init__.py usr/lib/python3.13/dist-packages/smtbx/array_family/ usr/lib/python3.13/dist-packages/smtbx/array_family/__init__.py usr/lib/python3.13/dist-packages/smtbx/command_line/ usr/lib/python3.13/dist-packages/smtbx/command_line/__init__.py usr/lib/python3.13/dist-packages/smtbx/command_line/absolute_structure.py usr/lib/python3.13/dist-packages/smtbx/command_line/anom_refine.py usr/lib/python3.13/dist-packages/smtbx/command_line/benchmark_refinement.py usr/lib/python3.13/dist-packages/smtbx/command_line/masks.py usr/lib/python3.13/dist-packages/smtbx/command_line/refine.py usr/lib/python3.13/dist-packages/smtbx/masks/ usr/lib/python3.13/dist-packages/smtbx/masks/__init__.py usr/lib/python3.13/dist-packages/smtbx/refinement/ usr/lib/python3.13/dist-packages/smtbx/refinement/__init__.py usr/lib/python3.13/dist-packages/smtbx/refinement/least_squares.py usr/lib/python3.13/dist-packages/smtbx/refinement/weighting_schemes.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/ usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/__init__.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/adp.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/all.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/fpfdp.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/occupancy.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/rigid.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/site.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/geometrical/ usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/geometrical/all.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/ usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/__init__.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py usr/lib/python3.13/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py usr/lib/python3.13/dist-packages/smtbx/refinement/restraints/ usr/lib/python3.13/dist-packages/smtbx/refinement/restraints/__init__.py usr/lib/python3.13/dist-packages/smtbx/refinement/restraints/adp_restraints.py usr/lib/python3.13/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py usr/lib/python3.13/dist-packages/smtbx/regression/ usr/lib/python3.13/dist-packages/smtbx/regression/__init__.py usr/lib/python3.13/dist-packages/smtbx/regression/tst_commandline_anomrefine.py usr/lib/python3.13/dist-packages/smtbx/regression/tst_commandline_refine.py usr/lib/python3.13/dist-packages/smtbx/regression/test_data/ usr/lib/python3.13/dist-packages/smtbx/regression/test_data/__init__.py usr/lib/python3.13/dist-packages/smtbx/source_generators/ usr/lib/python3.13/dist-packages/smtbx/source_generators/__init__.py usr/lib/python3.13/dist-packages/smtbx/source_generators/flex_fwd_h.py usr/lib/python3.13/dist-packages/smtbx/stl/ usr/lib/python3.13/dist-packages/smtbx/stl/__init__.py usr/lib/python3.13/dist-packages/smtbx/stl/map.py usr/lib/python3.13/dist-packages/smtbx/structure_factors/ usr/lib/python3.13/dist-packages/smtbx/structure_factors/__init__.py usr/lib/python3.13/dist-packages/smtbx/structure_factors/direct/ usr/lib/python3.13/dist-packages/smtbx/structure_factors/direct/__init__.py usr/lib/python3.13/dist-packages/spotfinder/ usr/lib/python3.13/dist-packages/spotfinder/__init__.py usr/lib/python3.13/dist-packages/spotfinder/exception.py usr/lib/python3.13/dist-packages/spotfinder/run_tests.py usr/lib/python3.13/dist-packages/spotfinder/applications/ usr/lib/python3.13/dist-packages/spotfinder/applications/__init__.py usr/lib/python3.13/dist-packages/spotfinder/applications/image_viewer.py usr/lib/python3.13/dist-packages/spotfinder/applications/practical_heuristics.py usr/lib/python3.13/dist-packages/spotfinder/applications/signal_strength.py usr/lib/python3.13/dist-packages/spotfinder/applications/stats_distl.py usr/lib/python3.13/dist-packages/spotfinder/applications/wrappers.py usr/lib/python3.13/dist-packages/spotfinder/applications/heuristic_tbx/ usr/lib/python3.13/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py usr/lib/python3.13/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py usr/lib/python3.13/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py usr/lib/python3.13/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py usr/lib/python3.13/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py usr/lib/python3.13/dist-packages/spotfinder/applications/xfel/ usr/lib/python3.13/dist-packages/spotfinder/applications/xfel/__init__.py usr/lib/python3.13/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py usr/lib/python3.13/dist-packages/spotfinder/applications/xfel/cxi_phil.py usr/lib/python3.13/dist-packages/spotfinder/applications/xfel/cxi_run3.py usr/lib/python3.13/dist-packages/spotfinder/array_family/ usr/lib/python3.13/dist-packages/spotfinder/array_family/__init__.py usr/lib/python3.13/dist-packages/spotfinder/array_family/flex.py usr/lib/python3.13/dist-packages/spotfinder/command_line/ usr/lib/python3.13/dist-packages/spotfinder/command_line/__init__.py usr/lib/python3.13/dist-packages/spotfinder/command_line/find_active_area.py usr/lib/python3.13/dist-packages/spotfinder/command_line/image_viewer.py usr/lib/python3.13/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py usr/lib/python3.13/dist-packages/spotfinder/command_line/signal_strength.py usr/lib/python3.13/dist-packages/spotfinder/command_line/sweep_strength.py usr/lib/python3.13/dist-packages/spotfinder/command_line/thin_client.py usr/lib/python3.13/dist-packages/spotfinder/core_toolbox/ usr/lib/python3.13/dist-packages/spotfinder/core_toolbox/__init__.py usr/lib/python3.13/dist-packages/spotfinder/core_toolbox/close_spots_detail.py usr/lib/python3.13/dist-packages/spotfinder/diffraction/ usr/lib/python3.13/dist-packages/spotfinder/diffraction/__init__.py usr/lib/python3.13/dist-packages/spotfinder/diffraction/geometry.py usr/lib/python3.13/dist-packages/spotfinder/diffraction/imagefiles.py usr/lib/python3.13/dist-packages/spotfinder/dxtbx_toolbox/ usr/lib/python3.13/dist-packages/spotfinder/dxtbx_toolbox/__init__.py usr/lib/python3.13/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py usr/lib/python3.13/dist-packages/spotfinder/math_support/ usr/lib/python3.13/dist-packages/spotfinder/math_support/__init__.py usr/lib/python3.13/dist-packages/spotfinder/math_support/sphere_formulae.py usr/lib/python3.13/dist-packages/spotfinder/servers/ usr/lib/python3.13/dist-packages/spotfinder/servers/__init__.py usr/lib/python3.13/dist-packages/spotfinder/servers/adsc_client.py usr/lib/python3.13/dist-packages/spotfinder/servers/apache.py usr/lib/python3.13/dist-packages/spotfinder/servers/apache_bcsb.py usr/lib/python3.13/dist-packages/spotfinder/servers/apache_dials.py usr/lib/python3.13/dist-packages/spotfinder/servers/apache_utils.py usr/lib/python3.13/dist-packages/spotfinder/servers/bcsb_client_example.py usr/lib/python3.13/dist-packages/spotfinder/servers/general_client_example.py usr/lib/python3.13/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py usr/lib/python3.13/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py usr/lib/python3.13/dist-packages/spotfinder/servers/multipart_encoder.py usr/lib/python3.13/dist-packages/spotfinder/servers/pilatus_client.py usr/lib/python3.13/dist-packages/spotfinder/servers/specific_client_example.py usr/lib/python3.13/dist-packages/spotfinder/servers/spotfinder_server_client_push.py usr/lib/python3.13/dist-packages/spotfinder/servers/spotfinder_server_read_file.py usr/lib/python3.13/dist-packages/spotfinder/servers/thin_client.py usr/lib/python3.13/dist-packages/wxtbx/ usr/lib/python3.13/dist-packages/wxtbx/__init__.py usr/lib/python3.13/dist-packages/wxtbx/adp_statistics.py usr/lib/python3.13/dist-packages/wxtbx/anomalous_scattering.py usr/lib/python3.13/dist-packages/wxtbx/app.py usr/lib/python3.13/dist-packages/wxtbx/b_plot.py usr/lib/python3.13/dist-packages/wxtbx/bitmaps.py usr/lib/python3.13/dist-packages/wxtbx/browser.py usr/lib/python3.13/dist-packages/wxtbx/checklistctrl.py usr/lib/python3.13/dist-packages/wxtbx/custom_restraints.py usr/lib/python3.13/dist-packages/wxtbx/ensemble_validation.py usr/lib/python3.13/dist-packages/wxtbx/errors.py usr/lib/python3.13/dist-packages/wxtbx/heavy_atoms.py usr/lib/python3.13/dist-packages/wxtbx/icons.py usr/lib/python3.13/dist-packages/wxtbx/info_panels.py usr/lib/python3.13/dist-packages/wxtbx/layout.py usr/lib/python3.13/dist-packages/wxtbx/listeditor.py usr/lib/python3.13/dist-packages/wxtbx/metallicbutton.py usr/lib/python3.13/dist-packages/wxtbx/misc_dialogs.py usr/lib/python3.13/dist-packages/wxtbx/monitor.py usr/lib/python3.13/dist-packages/wxtbx/mtz_dump.py usr/lib/python3.13/dist-packages/wxtbx/path_dialogs.py usr/lib/python3.13/dist-packages/wxtbx/pdb_editor.py usr/lib/python3.13/dist-packages/wxtbx/polygon.py usr/lib/python3.13/dist-packages/wxtbx/polygon_db_viewer.py usr/lib/python3.13/dist-packages/wxtbx/process_control.py usr/lib/python3.13/dist-packages/wxtbx/qstat_view.py usr/lib/python3.13/dist-packages/wxtbx/segmentedctrl.py usr/lib/python3.13/dist-packages/wxtbx/sequence_view.py usr/lib/python3.13/dist-packages/wxtbx/symmetry_dialog.py usr/lib/python3.13/dist-packages/wxtbx/tables.py usr/lib/python3.13/dist-packages/wxtbx/utils.py usr/lib/python3.13/dist-packages/wxtbx/windows.py usr/lib/python3.13/dist-packages/wxtbx/wx4_compatibility.py usr/lib/python3.13/dist-packages/wxtbx/xtriage.py usr/lib/python3.13/dist-packages/wxtbx/command_line/ usr/lib/python3.13/dist-packages/wxtbx/command_line/__init__.py usr/lib/python3.13/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py usr/lib/python3.13/dist-packages/wxtbx/command_line/b_plot.py usr/lib/python3.13/dist-packages/wxtbx/command_line/inspect_r_free_flags.py usr/lib/python3.13/dist-packages/wxtbx/command_line/loggraph.py usr/lib/python3.13/dist-packages/wxtbx/command_line/pdb_editor.py usr/lib/python3.13/dist-packages/wxtbx/command_line/pdb_statistics.py usr/lib/python3.13/dist-packages/wxtbx/command_line/plan_sad_experiment.py usr/lib/python3.13/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py usr/lib/python3.13/dist-packages/wxtbx/command_line/show_file_info.py usr/lib/python3.13/dist-packages/wxtbx/command_line/wxpython.py usr/lib/python3.13/dist-packages/wxtbx/command_line/xtriage.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/ usr/lib/python3.13/dist-packages/wxtbx/phil_controls/__init__.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/array_label.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/boolctrl.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/choice.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/choice_multi.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/floatctrl.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/floats.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/intctrl.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/ints.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/misc_ctrls.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/numbers.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/path.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/simple_dialogs.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/space_group.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/strctrl.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/strings.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/symop.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/text_base.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/tree.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/tribool.py usr/lib/python3.13/dist-packages/wxtbx/phil_controls/unit_cell.py usr/lib/python3.13/dist-packages/wxtbx/plots/ usr/lib/python3.13/dist-packages/wxtbx/plots/__init__.py usr/lib/python3.13/dist-packages/wxtbx/plots/emringer.py usr/lib/python3.13/dist-packages/wxtbx/plots/molprobity.py usr/lib/python3.13/dist-packages/wxtbx/reports/ usr/lib/python3.13/dist-packages/wxtbx/reports/__init__.py usr/lib/python3.13/dist-packages/wxtbx/reports/blast.py usr/lib/python3.13/dist-packages/wxtbx/reports/pdb_symmetry.py usr/lib/python3.13/dist-packages/xcif/ usr/lib/python3.13/dist-packages/xcif/__init__.py usr/lib/python3.13/dist-packages/xcif/run_tests.py usr/lib/python3.13/dist-packages/xcif/benchmarks/ usr/lib/python3.13/dist-packages/xcif/benchmarks/__init__.py usr/lib/python3.13/dist-packages/xcif/benchmarks/run_benchmarks.py usr/lib/python3.13/dist-packages/xcif/regression/ usr/lib/python3.13/dist-packages/xcif/regression/__init__.py usr/lib/python3.13/dist-packages/xcif/regression/tst_api_compat.py usr/lib/python3.13/dist-packages/xcif/regression/tst_bindings.py usr/lib/python3.13/dist-packages/xcif/regression/tst_example_parse.py usr/lib/python3.13/dist-packages/xcif/regression/tst_example_tokenize.py usr/lib/python3.13/dist-packages/xcif/regression/tst_gil_release.py usr/lib/python3.13/dist-packages/xcif/regression/tst_iotbx_cif_reader_engine.py usr/lib/python3.13/dist-packages/xcif/regression/tst_iotbx_cif_reader_parity.py usr/lib/python3.13/dist-packages/xcif/regression/tst_memory.py usr/lib/python3.13/dist-packages/xcif/regression/tst_non_strict_mode.py usr/lib/python3.13/dist-packages/xcif/regression/tst_parse_verify.py usr/lib/python3.13/dist-packages/xcif/regression/tst_pdb_coordinates.py usr/lib/python3.13/dist-packages/xcif/regression/tst_pdb_sf.py usr/lib/python3.13/dist-packages/xcif/regression/tst_quoted_string_delimiter.py usr/lib/python3.13/dist-packages/xcif/regression/tst_roundtrip.py usr/lib/python3.13/dist-packages/xcif/regression/tst_semicolon_field_strict.py usr/lib/python3.13/dist-packages/xcif/regression/tst_string_interning.py usr/lib/python3.13/dist-packages/xcif/regression/tst_utf8.py usr/lib/python3.14/ usr/lib/python3.14/dist-packages/ usr/lib/python3.14/dist-packages/annlib_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_boost_thread_test_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_maximum_clique_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_metric_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_utility_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_python_streambuf_test_ext.so usr/lib/python3.14/dist-packages/boost_optional_ext.so usr/lib/python3.14/dist-packages/boost_python_hybrid_times_ext.so usr/lib/python3.14/dist-packages/boost_python_meta_ext.so usr/lib/python3.14/dist-packages/boost_rational_ext.so usr/lib/python3.14/dist-packages/boost_tuple_ext.so usr/lib/python3.14/dist-packages/cbflib_ext.so usr/lib/python3.14/dist-packages/ccp4io_adaptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_adp_restraints_ext.so usr/lib/python3.14/dist-packages/cctbx_adptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_anharmonic_ext.so usr/lib/python3.14/dist-packages/cctbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/cctbx_asymmetric_map_ext.so usr/lib/python3.14/dist-packages/cctbx_covariance_ext.so usr/lib/python3.14/dist-packages/cctbx_crystal_ext.so usr/lib/python3.14/dist-packages/cctbx_dmtbx_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_chemical_elements_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_covalent_radii_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_fp_fdp_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_henke_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_icsd_radii_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_neutron_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_sasaki_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_tiny_pse_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_wavelengths_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_xray_scattering_ext.so usr/lib/python3.14/dist-packages/cctbx_emma_ext.so usr/lib/python3.14/dist-packages/cctbx_french_wilson_ext.so usr/lib/python3.14/dist-packages/cctbx_geometry_ext.so usr/lib/python3.14/dist-packages/cctbx_geometry_restraints_ext.so usr/lib/python3.14/dist-packages/cctbx_maptbx_bcr_bcr_ext.so usr/lib/python3.14/dist-packages/cctbx_maptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_masks_ext.so usr/lib/python3.14/dist-packages/cctbx_math_ext.so usr/lib/python3.14/dist-packages/cctbx_merging_ext.so usr/lib/python3.14/dist-packages/cctbx_miller_ext.so usr/lib/python3.14/dist-packages/cctbx_multipolar_ext.so usr/lib/python3.14/dist-packages/cctbx_orientation_ext.so usr/lib/python3.14/dist-packages/cctbx_sgtbx_asu_ext.so usr/lib/python3.14/dist-packages/cctbx_sgtbx_ext.so usr/lib/python3.14/dist-packages/cctbx_statistics_ext.so usr/lib/python3.14/dist-packages/cctbx_symmetry_search_ext.so usr/lib/python3.14/dist-packages/cctbx_translation_search_ext.so usr/lib/python3.14/dist-packages/cctbx_uctbx_ext.so usr/lib/python3.14/dist-packages/cctbx_xray_ext.so usr/lib/python3.14/dist-packages/cctbx_xray_observations_ext.so usr/lib/python3.14/dist-packages/cma_es_ext.so usr/lib/python3.14/dist-packages/determine_unit_cell_ext.so usr/lib/python3.14/dist-packages/dxtbx_ext.so usr/lib/python3.14/dist-packages/dxtbx_flumpy.so usr/lib/python3.14/dist-packages/dxtbx_format_image_ext.so usr/lib/python3.14/dist-packages/dxtbx_format_nexus_ext.so usr/lib/python3.14/dist-packages/dxtbx_imageset_ext.so usr/lib/python3.14/dist-packages/dxtbx_masking_ext.so usr/lib/python3.14/dist-packages/dxtbx_model_ext.so usr/lib/python3.14/dist-packages/fable_ext.so usr/lib/python3.14/dist-packages/gltbx_fonts_ext.so usr/lib/python3.14/dist-packages/gltbx_gl_ext.so usr/lib/python3.14/dist-packages/gltbx_glu_ext.so usr/lib/python3.14/dist-packages/gltbx_quadrics_ext.so usr/lib/python3.14/dist-packages/gltbx_util_ext.so usr/lib/python3.14/dist-packages/gltbx_viewer_utils_ext.so usr/lib/python3.14/dist-packages/iotbx_ccp4_map_ext.so usr/lib/python3.14/dist-packages/iotbx_cif_ext.so usr/lib/python3.14/dist-packages/iotbx_detectors_bruker_ext.so usr/lib/python3.14/dist-packages/iotbx_detectors_ext.so usr/lib/python3.14/dist-packages/iotbx_dsn6_map_ext.so usr/lib/python3.14/dist-packages/iotbx_dtrek_ext.so usr/lib/python3.14/dist-packages/iotbx_mtz_ext.so usr/lib/python3.14/dist-packages/iotbx_pdb_ext.so usr/lib/python3.14/dist-packages/iotbx_pdb_hierarchy_ext.so usr/lib/python3.14/dist-packages/iotbx_scalepack_ext.so usr/lib/python3.14/dist-packages/iotbx_shelx_ext.so usr/lib/python3.14/dist-packages/iotbx_wildcard_ext.so usr/lib/python3.14/dist-packages/iotbx_xplor_ext.so usr/lib/python3.14/dist-packages/mmtbx_alignment_ext.so usr/lib/python3.14/dist-packages/mmtbx_building_loop_closure_ext.so usr/lib/python3.14/dist-packages/mmtbx_bulk_solvent_ext.so usr/lib/python3.14/dist-packages/mmtbx_den_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_dssp_ext.so usr/lib/python3.14/dist-packages/mmtbx_dynamics_ext.so usr/lib/python3.14/dist-packages/mmtbx_f_model_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_asa_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_clash_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_indexing_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_primitive_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_shared_types_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.so usr/lib/python3.14/dist-packages/mmtbx_hydrogens_ext.so usr/lib/python3.14/dist-packages/mmtbx_masks_ext.so usr/lib/python3.14/dist-packages/mmtbx_max_lik_ext.so usr/lib/python3.14/dist-packages/mmtbx_mosaic_ext.so usr/lib/python3.14/dist-packages/mmtbx_ncs_cartesian_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_ncs_ext.so usr/lib/python3.14/dist-packages/mmtbx_pair_interaction_ext.so usr/lib/python3.14/dist-packages/mmtbx_probe_ext.so usr/lib/python3.14/dist-packages/mmtbx_ramachandran_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_reduce_ext.so usr/lib/python3.14/dist-packages/mmtbx_reference_coordinate_ext.so usr/lib/python3.14/dist-packages/mmtbx_rotamer_fit_ext.so usr/lib/python3.14/dist-packages/mmtbx_rsr_ext.so usr/lib/python3.14/dist-packages/mmtbx_scaling_ext.so usr/lib/python3.14/dist-packages/mmtbx_secondary_structure_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_decompose_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_optimise_amplitudes_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_utils_ext.so usr/lib/python3.14/dist-packages/mmtbx_utils_ext.so usr/lib/python3.14/dist-packages/mmtbx_validation_ramachandran_ext.so usr/lib/python3.14/dist-packages/omptbx_ext.so usr/lib/python3.14/dist-packages/regression_test_ext.so usr/lib/python3.14/dist-packages/rstbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/rstbx_bandpass_ext.so usr/lib/python3.14/dist-packages/rstbx_bpcx_detector_model_ext.so usr/lib/python3.14/dist-packages/rstbx_diffraction_fastbragg_ext.so usr/lib/python3.14/dist-packages/rstbx_ext.so usr/lib/python3.14/dist-packages/rstbx_indexing_api_ext.so usr/lib/python3.14/dist-packages/rstbx_integration_ext.so usr/lib/python3.14/dist-packages/rstbx_simage_ext.so usr/lib/python3.14/dist-packages/rstbx_simulation_ext.so usr/lib/python3.14/dist-packages/rstbx_symmetry_constraints_ext.so usr/lib/python3.14/dist-packages/scitbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/scitbx_array_family_shared_ext.so usr/lib/python3.14/dist-packages/scitbx_cubicle_neighbors_ext.so usr/lib/python3.14/dist-packages/scitbx_fftpack_ext.so usr/lib/python3.14/dist-packages/scitbx_glmtbx_ext.so usr/lib/python3.14/dist-packages/scitbx_graphics_utils_ext.so usr/lib/python3.14/dist-packages/scitbx_iso_surface_ext.so usr/lib/python3.14/dist-packages/scitbx_lbfgs_ext.so usr/lib/python3.14/dist-packages/scitbx_lbfgsb_ext.so usr/lib/python3.14/dist-packages/scitbx_linalg_ext.so usr/lib/python3.14/dist-packages/scitbx_lstbx_normal_equations_ext.so usr/lib/python3.14/dist-packages/scitbx_math_ext.so usr/lib/python3.14/dist-packages/scitbx_minpack_ext.so usr/lib/python3.14/dist-packages/scitbx_r3_utils_ext.so usr/lib/python3.14/dist-packages/scitbx_random_ext.so usr/lib/python3.14/dist-packages/scitbx_rigid_body_ext.so 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usr/lib/python3.14/dist-packages/boost/python.py usr/lib/python3.14/dist-packages/boost/rational.py usr/lib/python3.14/dist-packages/boost/std_pair.py usr/lib/python3.14/dist-packages/boost/tuple.py usr/lib/python3.14/dist-packages/boost_adaptbx/ usr/lib/python3.14/dist-packages/boost_adaptbx/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/hybrid_times.py usr/lib/python3.14/dist-packages/boost_adaptbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/boost_adaptbx/run_tests.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/ usr/lib/python3.14/dist-packages/boost_adaptbx/boost/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/optional.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/python.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/rational.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/std_pair.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/tuple.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/ usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/divide_by_zero.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/double_overflow.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/gcd.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/inexact.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/int_overflow.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/lcm.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/segmentation_fault.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/show_environ_usage.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/show_platform_info.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/ usr/lib/python3.14/dist-packages/boost_adaptbx/graph/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/breadth_first_search.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/clustering_algorithm.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/connected_component_algorithm.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/graph_structure_comparison.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/maximum_clique.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/metric.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/min_cut_max_flow.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/minimum_cut_enumerate.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/utility.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/ usr/lib/python3.14/dist-packages/cbflib_adaptbx/__init__.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/copy_files.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/exercise_compression.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/run_tests.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/command_line/ usr/lib/python3.14/dist-packages/cbflib_adaptbx/command_line/__init__.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/command_line/dump.py usr/lib/python3.14/dist-packages/ccp4io_adaptbx/ usr/lib/python3.14/dist-packages/ccp4io_adaptbx/__init__.py usr/lib/python3.14/dist-packages/ccp4io_adaptbx/copy_files.py usr/lib/python3.14/dist-packages/ccp4io_adaptbx/tst.py usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/ usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/METADATA usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/RECORD usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/WHEEL usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/top_level.txt usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/licenses/ usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/licenses/LICENSE.txt usr/lib/python3.14/dist-packages/cctbx/ usr/lib/python3.14/dist-packages/cctbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/adptbx.py usr/lib/python3.14/dist-packages/cctbx/anharmonic.py usr/lib/python3.14/dist-packages/cctbx/crystal_orientation.py usr/lib/python3.14/dist-packages/cctbx/dmtbx.py usr/lib/python3.14/dist-packages/cctbx/euclidean_model_matching.py usr/lib/python3.14/dist-packages/cctbx/french_wilson.py usr/lib/python3.14/dist-packages/cctbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/cctbx/math_module.py usr/lib/python3.14/dist-packages/cctbx/multipolar.py usr/lib/python3.14/dist-packages/cctbx/r_free_utils.py usr/lib/python3.14/dist-packages/cctbx/run_examples.py usr/lib/python3.14/dist-packages/cctbx/run_tests.py usr/lib/python3.14/dist-packages/cctbx/statistics.py usr/lib/python3.14/dist-packages/cctbx/symmetry_search.py usr/lib/python3.14/dist-packages/cctbx/translation_search.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/ usr/lib/python3.14/dist-packages/cctbx/adp_restraints/__init__.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/energies.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/flags.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/array_family/ usr/lib/python3.14/dist-packages/cctbx/array_family/__init__.py usr/lib/python3.14/dist-packages/cctbx/array_family/flex.py usr/lib/python3.14/dist-packages/cctbx/command_line/ usr/lib/python3.14/dist-packages/cctbx/command_line/__init__.py usr/lib/python3.14/dist-packages/cctbx/command_line/auto_sharpen.py usr/lib/python3.14/dist-packages/cctbx/command_line/brehm_diederichs.py usr/lib/python3.14/dist-packages/cctbx/command_line/cctbx_test_nightly.py usr/lib/python3.14/dist-packages/cctbx/command_line/cod_select_and_pickle.py usr/lib/python3.14/dist-packages/cctbx/command_line/diffuse.py usr/lib/python3.14/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py usr/lib/python3.14/dist-packages/cctbx/command_line/euclidean_model_matching.py usr/lib/python3.14/dist-packages/cctbx/command_line/find_reticular_twin_laws.py usr/lib/python3.14/dist-packages/cctbx/command_line/form_factor_query.py usr/lib/python3.14/dist-packages/cctbx/command_line/precession_view.py usr/lib/python3.14/dist-packages/cctbx/command_line/qscore.py usr/lib/python3.14/dist-packages/cctbx/command_line/samosa_join.py usr/lib/python3.14/dist-packages/cctbx/command_line/samosa_scale.py usr/lib/python3.14/dist-packages/cctbx/command_line/segment_and_split_map.py usr/lib/python3.14/dist-packages/cctbx/command_line/space_group_info.py usr/lib/python3.14/dist-packages/cctbx/command_line/structure_factor_timings.py usr/lib/python3.14/dist-packages/cctbx/command_line/subgroups.py usr/lib/python3.14/dist-packages/cctbx/command_line/version.py usr/lib/python3.14/dist-packages/cctbx/command_line/wavelength_units.py usr/lib/python3.14/dist-packages/cctbx/covariance/ usr/lib/python3.14/dist-packages/cctbx/covariance/__init__.py usr/lib/python3.14/dist-packages/cctbx/crystal/ usr/lib/python3.14/dist-packages/cctbx/crystal/__init__.py usr/lib/python3.14/dist-packages/cctbx/crystal/burzlaff_zimmermann_dewolff.py usr/lib/python3.14/dist-packages/cctbx/crystal/close_packing.py usr/lib/python3.14/dist-packages/cctbx/crystal/coordination_sequences.py usr/lib/python3.14/dist-packages/cctbx/crystal/direct_space_asu.py usr/lib/python3.14/dist-packages/cctbx/crystal/distance_based_connectivity.py usr/lib/python3.14/dist-packages/cctbx/crystal/find_best_cell.py usr/lib/python3.14/dist-packages/cctbx/crystal/reindex.py usr/lib/python3.14/dist-packages/cctbx/crystal/super_cell.py usr/lib/python3.14/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py usr/lib/python3.14/dist-packages/cctbx/crystal/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/crystal/tst_super_cell.py usr/lib/python3.14/dist-packages/cctbx/development/ usr/lib/python3.14/dist-packages/cctbx/development/__init__.py usr/lib/python3.14/dist-packages/cctbx/development/approx_amplitude_vs_resolution.py usr/lib/python3.14/dist-packages/cctbx/development/cns_density_modification.py usr/lib/python3.14/dist-packages/cctbx/development/create_models_or_maps.py usr/lib/python3.14/dist-packages/cctbx/development/debug_utils.py usr/lib/python3.14/dist-packages/cctbx/development/direct_or_fft.py usr/lib/python3.14/dist-packages/cctbx/development/electron_density_sampling.py usr/lib/python3.14/dist-packages/cctbx/development/fmt_utils.py usr/lib/python3.14/dist-packages/cctbx/development/github.py usr/lib/python3.14/dist-packages/cctbx/development/make_cns_input.py usr/lib/python3.14/dist-packages/cctbx/development/make_settings.py usr/lib/python3.14/dist-packages/cctbx/development/random_structure.py usr/lib/python3.14/dist-packages/cctbx/development/run_shelx.py usr/lib/python3.14/dist-packages/cctbx/development/run_shelx76.py usr/lib/python3.14/dist-packages/cctbx/development/space_group_option_parser.py usr/lib/python3.14/dist-packages/cctbx/development/structure_factor_utils.py usr/lib/python3.14/dist-packages/cctbx/development/tst_cns_epsilon.py usr/lib/python3.14/dist-packages/cctbx/development/tst_cns_hl.py usr/lib/python3.14/dist-packages/cctbx/eltbx/ usr/lib/python3.14/dist-packages/cctbx/eltbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/eltbx/attenuation_coefficient.py usr/lib/python3.14/dist-packages/cctbx/eltbx/chemical_elements.py usr/lib/python3.14/dist-packages/cctbx/eltbx/covalent_radii.py usr/lib/python3.14/dist-packages/cctbx/eltbx/distance_based_connectivity.py usr/lib/python3.14/dist-packages/cctbx/eltbx/e_scattering.py usr/lib/python3.14/dist-packages/cctbx/eltbx/formula.py usr/lib/python3.14/dist-packages/cctbx/eltbx/fp_fdp.py usr/lib/python3.14/dist-packages/cctbx/eltbx/gaussian_fit.py usr/lib/python3.14/dist-packages/cctbx/eltbx/henke.py usr/lib/python3.14/dist-packages/cctbx/eltbx/icsd_radii.py usr/lib/python3.14/dist-packages/cctbx/eltbx/neutron.py usr/lib/python3.14/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py usr/lib/python3.14/dist-packages/cctbx/eltbx/sasaki.py usr/lib/python3.14/dist-packages/cctbx/eltbx/tiny_pse.py usr/lib/python3.14/dist-packages/cctbx/eltbx/van_der_waals_radii.py usr/lib/python3.14/dist-packages/cctbx/eltbx/wavelengths.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/ usr/lib/python3.14/dist-packages/cctbx/eltbx/development/__init__.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/combine_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/e_scattering_plots.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/format_gaussian_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/hydrogen_plots.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_approx.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_cross_validation.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_kissel.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_section61_io.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/kissel_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/kissel_io.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/rez_rez_grant.py usr/lib/python3.14/dist-packages/cctbx/eltbx/xray_scattering/ usr/lib/python3.14/dist-packages/cctbx/eltbx/xray_scattering/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/ usr/lib/python3.14/dist-packages/cctbx/examples/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/adp_symmetry_constraints.py usr/lib/python3.14/dist-packages/cctbx/examples/all_axes.py usr/lib/python3.14/dist-packages/cctbx/examples/analyze_adp.py usr/lib/python3.14/dist-packages/cctbx/examples/ccp4_map.py usr/lib/python3.14/dist-packages/cctbx/examples/change_hand_p31.py usr/lib/python3.14/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py usr/lib/python3.14/dist-packages/cctbx/examples/cr2o3_consistency_checks.py usr/lib/python3.14/dist-packages/cctbx/examples/cr2o3_primitive_cell.py usr/lib/python3.14/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/f_model_example.py usr/lib/python3.14/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py usr/lib/python3.14/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py usr/lib/python3.14/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py usr/lib/python3.14/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/getting_started.py usr/lib/python3.14/dist-packages/cctbx/examples/hirshfeld_test.py usr/lib/python3.14/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py usr/lib/python3.14/dist-packages/cctbx/examples/lebedev_2005_perturbation.py usr/lib/python3.14/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py usr/lib/python3.14/dist-packages/cctbx/examples/location_part.py usr/lib/python3.14/dist-packages/cctbx/examples/map_skewness.py usr/lib/python3.14/dist-packages/cctbx/examples/maximum_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/miller_common_sets.py usr/lib/python3.14/dist-packages/cctbx/examples/miller_transform.py usr/lib/python3.14/dist-packages/cctbx/examples/neutron_structure_factors.py usr/lib/python3.14/dist-packages/cctbx/examples/phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/examples/quartz_structure.py usr/lib/python3.14/dist-packages/cctbx/examples/random_f_calc.py usr/lib/python3.14/dist-packages/cctbx/examples/random_puckers.py usr/lib/python3.14/dist-packages/cctbx/examples/reduced_cell_two_folds.py usr/lib/python3.14/dist-packages/cctbx/examples/site_symmetry_constraints.py usr/lib/python3.14/dist-packages/cctbx/examples/site_symmetry_table.py usr/lib/python3.14/dist-packages/cctbx/examples/space_group_matrices.py usr/lib/python3.14/dist-packages/cctbx/examples/space_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/steve_collins.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_2.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_3.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_4.py usr/lib/python3.14/dist-packages/cctbx/examples/sub_group_graph.py usr/lib/python3.14/dist-packages/cctbx/examples/symops_530.py usr/lib/python3.14/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_space_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py usr/lib/python3.14/dist-packages/cctbx/examples/unit_cell_minimizers.py usr/lib/python3.14/dist-packages/cctbx/examples/unit_cell_refinement.py usr/lib/python3.14/dist-packages/cctbx/examples/view_fft_map.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/ usr/lib/python3.14/dist-packages/cctbx/examples/merging/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/data_subset.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/data_utilities.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/show_results.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/sigma_correction.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/task4.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test1.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test_cc_half.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/tst_permutations.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/ usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/join.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/scale.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/ usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py usr/lib/python3.14/dist-packages/cctbx/geometry/ usr/lib/python3.14/dist-packages/cctbx/geometry/__init__.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/ usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/__init__.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/auto_linking_types.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/base_geometry.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/distance_least_squares.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/energies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/flags.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/lbfgs.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/linking_class.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/manager.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/standard_cif_links.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_motif.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py usr/lib/python3.14/dist-packages/cctbx/macro_mol/ usr/lib/python3.14/dist-packages/cctbx/macro_mol/__init__.py usr/lib/python3.14/dist-packages/cctbx/macro_mol/rotation_parameters.py usr/lib/python3.14/dist-packages/cctbx/maptbx/ usr/lib/python3.14/dist-packages/cctbx/maptbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/maptbx/auto_sharpen.py usr/lib/python3.14/dist-packages/cctbx/maptbx/box.py usr/lib/python3.14/dist-packages/cctbx/maptbx/fsc_curve.py usr/lib/python3.14/dist-packages/cctbx/maptbx/map_symmetry.py usr/lib/python3.14/dist-packages/cctbx/maptbx/mask.py usr/lib/python3.14/dist-packages/cctbx/maptbx/mem.py usr/lib/python3.14/dist-packages/cctbx/maptbx/minimization.py usr/lib/python3.14/dist-packages/cctbx/maptbx/prepare_map_for_docking.py usr/lib/python3.14/dist-packages/cctbx/maptbx/prepare_map_for_refinement.py usr/lib/python3.14/dist-packages/cctbx/maptbx/qscore.py usr/lib/python3.14/dist-packages/cctbx/maptbx/real_space_refinement_simple.py usr/lib/python3.14/dist-packages/cctbx/maptbx/refine_scales_errors.py usr/lib/python3.14/dist-packages/cctbx/maptbx/refine_sharpening.py usr/lib/python3.14/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py usr/lib/python3.14/dist-packages/cctbx/maptbx/segment_and_split_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_asymmetric_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_atom_curves.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_bcr.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_ccp.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_interpolation.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_interpolation_2.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_loft.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_mask.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_qscore.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_target_and_gradients.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/ usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/__init__.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/bcr.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/compute_tables.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/qmap.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_adp_refine.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_example.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_qmap_02.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_table.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_two_atoms.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_vrm.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_vrm2.py usr/lib/python3.14/dist-packages/cctbx/masks/ usr/lib/python3.14/dist-packages/cctbx/masks/__init__.py usr/lib/python3.14/dist-packages/cctbx/merging/ usr/lib/python3.14/dist-packages/cctbx/merging/__init__.py usr/lib/python3.14/dist-packages/cctbx/merging/brehm_diederichs.py usr/lib/python3.14/dist-packages/cctbx/miller/ usr/lib/python3.14/dist-packages/cctbx/miller/__init__.py usr/lib/python3.14/dist-packages/cctbx/miller/display.py usr/lib/python3.14/dist-packages/cctbx/miller/reindexing.py usr/lib/python3.14/dist-packages/cctbx/miller/tst_map_to_asu_isym.py usr/lib/python3.14/dist-packages/cctbx/miller/tst_reindexing.py usr/lib/python3.14/dist-packages/cctbx/neutron/ usr/lib/python3.14/dist-packages/cctbx/neutron/__init__.py usr/lib/python3.14/dist-packages/cctbx/omz/ usr/lib/python3.14/dist-packages/cctbx/omz/__init__.py usr/lib/python3.14/dist-packages/cctbx/omz/bfgs.py usr/lib/python3.14/dist-packages/cctbx/omz/cif_refine.py usr/lib/python3.14/dist-packages/cctbx/omz/cod_refine.py usr/lib/python3.14/dist-packages/cctbx/omz/cod_select_and_pickle.py usr/lib/python3.14/dist-packages/cctbx/omz/dev.py usr/lib/python3.14/dist-packages/cctbx/omz/eval_iso_vs_refined.py usr/lib/python3.14/dist-packages/cctbx/omz/pdb_dev.py usr/lib/python3.14/dist-packages/cctbx/omz/tardy_adaptor.py usr/lib/python3.14/dist-packages/cctbx/omz/tst_bfgs.py usr/lib/python3.14/dist-packages/cctbx/omz/tst_dev.py usr/lib/python3.14/dist-packages/cctbx/regression/ usr/lib/python3.14/dist-packages/cctbx/regression/__init__.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_constraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_amplitude_normalisation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_change_basis.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_connectivity.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_connectivity_allsym.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_coordination_sequences.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_create_models_or_maps.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal_close_packing.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_diffuse.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_direct_scaling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_direct_space_asu.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_emma.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_expand_to_p1.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_f_model.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fast_nv1995.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_find_best_cell.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_french_wilson.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints_2.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_modifications.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_modifications_rm.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_pickling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grouped_data.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_krivy_gruber.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_loc_res.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_map_is_periodic.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_box.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_mask.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_math_module.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_mem.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_mem_2.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_data_manipulation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_fft_map.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_lookup_utils.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_statistics.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_niggli_reduction_cpp.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_pair_asu_table.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_pointgroup_tools.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_r_free_utils.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_refine_xray_curvs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_reflection_statistics.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sampled_model_density.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_denominators.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_harker.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_show_cosets.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sphericity.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_statistics_graphs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_triplet_generator.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_twin_target.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_wavelength_units.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_web_change_basis.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_weighting_schemes.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_wilson_plot.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_derivatives.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_fast_gradients.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_minimization.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_minimization_failure.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_target_functors.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/bravais_types.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/cosets.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/harker.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/literal_description.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/plane_groups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/pointgroup_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/reticular_pg_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/reticular_twin_laws.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/show_cosets.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/sub_lattice_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/subgroups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/symbol_confidence.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/sys_abs_equiv.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py usr/lib/python3.14/dist-packages/cctbx/source_generators/ usr/lib/python3.14/dist-packages/cctbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/cctbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/ usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py usr/lib/python3.14/dist-packages/cctbx/uctbx/ usr/lib/python3.14/dist-packages/cctbx/uctbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/uctbx/gruber_1973.py usr/lib/python3.14/dist-packages/cctbx/uctbx/gruber_1973_table_1.py 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usr/lib/python3.14/dist-packages/iotbx/cif/geometry.py usr/lib/python3.14/dist-packages/iotbx/cif/model.py usr/lib/python3.14/dist-packages/iotbx/cif/restraint_file_merge.py usr/lib/python3.14/dist-packages/iotbx/cif/restraints.py usr/lib/python3.14/dist-packages/iotbx/cif/validation.py usr/lib/python3.14/dist-packages/iotbx/cns/ usr/lib/python3.14/dist-packages/iotbx/cns/__init__.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_utils.py usr/lib/python3.14/dist-packages/iotbx/cns/index_fobs_sigma_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/miller_array.py usr/lib/python3.14/dist-packages/iotbx/cns/pdb_remarks.py usr/lib/python3.14/dist-packages/iotbx/cns/reflection_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/sdb_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/sdb_writer.py usr/lib/python3.14/dist-packages/iotbx/cns/space_group_symbols.py usr/lib/python3.14/dist-packages/iotbx/cns/tst_cns.py usr/lib/python3.14/dist-packages/iotbx/cns/xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/ usr/lib/python3.14/dist-packages/iotbx/command_line/__init__.py usr/lib/python3.14/dist-packages/iotbx/command_line/biomt_reconstruction.py usr/lib/python3.14/dist-packages/iotbx/command_line/blast_pdb.py usr/lib/python3.14/dist-packages/iotbx/command_line/build_phil_cache.py usr/lib/python3.14/dist-packages/iotbx/command_line/cbf_read.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.as_miller_arrays.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.validate.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif_as_pdb.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.reflection_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.sdb_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns_as_mtz.py usr/lib/python3.14/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/command_line/csv_as_mtz.py usr/lib/python3.14/dist-packages/iotbx/command_line/dano_as_amplitudes.py usr/lib/python3.14/dist-packages/iotbx/command_line/detector_image_as_png.py usr/lib/python3.14/dist-packages/iotbx/command_line/distance_least_squares.py usr/lib/python3.14/dist-packages/iotbx/command_line/dtrek.to_cns.py usr/lib/python3.14/dist-packages/iotbx/command_line/effective_resolution.py usr/lib/python3.14/dist-packages/iotbx/command_line/emma.py usr/lib/python3.14/dist-packages/iotbx/command_line/explore_metric_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/export_scalepack_unmerged.py usr/lib/python3.14/dist-packages/iotbx/command_line/file_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py usr/lib/python3.14/dist-packages/iotbx/command_line/french_wilson.py usr/lib/python3.14/dist-packages/iotbx/command_line/get_pubmed_citation.py usr/lib/python3.14/dist-packages/iotbx/command_line/lattice_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtrix_reconstruction.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtz.dump.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtz_as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/patterson_map.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.b_factor_stats.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.hierarchy.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.insert_scale_records.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.join_fragment_files.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.print_sequence.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_add_conformations.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_as_fasta.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_get_citation.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_labels_comparison.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_labels_diff.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_remediator.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_show_connectivity.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_split_models.py usr/lib/python3.14/dist-packages/iotbx/command_line/phil.py usr/lib/python3.14/dist-packages/iotbx/command_line/poscar_as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_accumulation.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_as_cns.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_converter.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_statistics.py usr/lib/python3.14/dist-packages/iotbx/command_line/reindex.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.dump_as_python.py usr/lib/python3.14/dist-packages/iotbx/command_line/show_distances.py usr/lib/python3.14/dist-packages/iotbx/command_line/show_systematic_absences.py usr/lib/python3.14/dist-packages/iotbx/command_line/simple_map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/command_line/sort_atoms.py usr/lib/python3.14/dist-packages/iotbx/command_line/split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/symmetry_search.py usr/lib/python3.14/dist-packages/iotbx/command_line/unique_with_biomt.py usr/lib/python3.14/dist-packages/iotbx/command_line/xplor.map.show_summary.py usr/lib/python3.14/dist-packages/iotbx/data_manager/ usr/lib/python3.14/dist-packages/iotbx/data_manager/__init__.py usr/lib/python3.14/dist-packages/iotbx/data_manager/common.py usr/lib/python3.14/dist-packages/iotbx/data_manager/map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/data_manager/miller_array.py usr/lib/python3.14/dist-packages/iotbx/data_manager/model.py usr/lib/python3.14/dist-packages/iotbx/data_manager/ncs_spec.py usr/lib/python3.14/dist-packages/iotbx/data_manager/phil.py usr/lib/python3.14/dist-packages/iotbx/data_manager/real_map.py usr/lib/python3.14/dist-packages/iotbx/data_manager/restraint.py usr/lib/python3.14/dist-packages/iotbx/data_manager/sequence.py usr/lib/python3.14/dist-packages/iotbx/detectors/ usr/lib/python3.14/dist-packages/iotbx/detectors/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/active_area_filter.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc_module.py usr/lib/python3.14/dist-packages/iotbx/detectors/beam_center_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/bruker.py usr/lib/python3.14/dist-packages/iotbx/detectors/cbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/cspad_detector_formats.py usr/lib/python3.14/dist-packages/iotbx/detectors/detectorbase.py usr/lib/python3.14/dist-packages/iotbx/detectors/dtrek.py usr/lib/python3.14/dist-packages/iotbx/detectors/edf.py usr/lib/python3.14/dist-packages/iotbx/detectors/eiger.py usr/lib/python3.14/dist-packages/iotbx/detectors/eiger_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/generic_detector.py usr/lib/python3.14/dist-packages/iotbx/detectors/hamamatsu.py usr/lib/python3.14/dist-packages/iotbx/detectors/image_from_http_request.py usr/lib/python3.14/dist-packages/iotbx/detectors/macscience.py usr/lib/python3.14/dist-packages/iotbx/detectors/mar.py usr/lib/python3.14/dist-packages/iotbx/detectors/marIP.py usr/lib/python3.14/dist-packages/iotbx/detectors/noir.py usr/lib/python3.14/dist-packages/iotbx/detectors/npy.py usr/lib/python3.14/dist-packages/iotbx/detectors/pilatus_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/pilatus_slice.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxis.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxis_nonsquare.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxisbase.py usr/lib/python3.14/dist-packages/iotbx/detectors/saturn.py usr/lib/python3.14/dist-packages/iotbx/detectors/test_mar.py usr/lib/python3.14/dist-packages/iotbx/detectors/test_raxis2.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_adsc.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_debug_write.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_detectors.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_py_cbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/url_support.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/ usr/lib/python3.14/dist-packages/iotbx/detectors/context/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/camera_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/config_detector.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/endstation.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/spot_xy_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/util/ usr/lib/python3.14/dist-packages/iotbx/detectors/util/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/util/filters.py usr/lib/python3.14/dist-packages/iotbx/dsn6/ usr/lib/python3.14/dist-packages/iotbx/dsn6/__init__.py usr/lib/python3.14/dist-packages/iotbx/dsn6/tst.py usr/lib/python3.14/dist-packages/iotbx/dtrek/ usr/lib/python3.14/dist-packages/iotbx/dtrek/__init__.py usr/lib/python3.14/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py usr/lib/python3.14/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py usr/lib/python3.14/dist-packages/iotbx/dtrek/reflnlist_reader.py usr/lib/python3.14/dist-packages/iotbx/examples/ usr/lib/python3.14/dist-packages/iotbx/examples/__init__.py usr/lib/python3.14/dist-packages/iotbx/examples/direct_methods_light.py usr/lib/python3.14/dist-packages/iotbx/examples/libtbx_phil_examples.py usr/lib/python3.14/dist-packages/iotbx/examples/mtz_convert_free_to_work.py usr/lib/python3.14/dist-packages/iotbx/examples/mtz_free_flipper.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_shake.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_split_chains.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_symmetry_copies.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_to_map_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py usr/lib/python3.14/dist-packages/iotbx/examples/prepare_model_for_rsr.py usr/lib/python3.14/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py usr/lib/python3.14/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py usr/lib/python3.14/dist-packages/iotbx/examples/tst_mtz_free_flipper.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/ usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/__init__.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v2_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v3_better.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py usr/lib/python3.14/dist-packages/iotbx/fullprof/ usr/lib/python3.14/dist-packages/iotbx/fullprof/__init__.py usr/lib/python3.14/dist-packages/iotbx/fullprof/read_pcr.py usr/lib/python3.14/dist-packages/iotbx/fullprof/write_pcr.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/ usr/lib/python3.14/dist-packages/iotbx/gui_tools/__init__.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/cif_conversions.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/import_data_and_flags.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/models.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/reflections.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/tst.py usr/lib/python3.14/dist-packages/iotbx/kriber/ usr/lib/python3.14/dist-packages/iotbx/kriber/__init__.py usr/lib/python3.14/dist-packages/iotbx/kriber/strudat.py usr/lib/python3.14/dist-packages/iotbx/kriber/tst_strudat.py usr/lib/python3.14/dist-packages/iotbx/mrcfile/ usr/lib/python3.14/dist-packages/iotbx/mrcfile/__init__.py usr/lib/python3.14/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py usr/lib/python3.14/dist-packages/iotbx/mtz/ usr/lib/python3.14/dist-packages/iotbx/mtz/__init__.py usr/lib/python3.14/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py usr/lib/python3.14/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_dano.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_ext.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_miller_dict.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_unmerged.py usr/lib/python3.14/dist-packages/iotbx/ncs/ usr/lib/python3.14/dist-packages/iotbx/ncs/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/ usr/lib/python3.14/dist-packages/iotbx/pdb/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/aa_utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/amino_acid_codes.py usr/lib/python3.14/dist-packages/iotbx/pdb/atom_name_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/atom_selection.py usr/lib/python3.14/dist-packages/iotbx/pdb/cryst1_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py usr/lib/python3.14/dist-packages/iotbx/pdb/download.py usr/lib/python3.14/dist-packages/iotbx/pdb/experiment_type.py usr/lib/python3.14/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py usr/lib/python3.14/dist-packages/iotbx/pdb/fetch.py usr/lib/python3.14/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/pdb/hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/hybrid_36.py usr/lib/python3.14/dist-packages/iotbx/pdb/misc_records_output.py usr/lib/python3.14/dist-packages/iotbx/pdb/mmcif.py usr/lib/python3.14/dist-packages/iotbx/pdb/modified_aa_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/modified_rna_dna_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/nucleic_acid_codes.py usr/lib/python3.14/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/pdb/pdbe.py usr/lib/python3.14/dist-packages/iotbx/pdb/rcsb.py usr/lib/python3.14/dist-packages/iotbx/pdb/records.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_290_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_2_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_3_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/rna_dna_detection.py usr/lib/python3.14/dist-packages/iotbx/pdb/secondary_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_selection.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_selection_string.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_ext.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_pdb.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_secondary_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_secondary_structure_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_tls.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/web_service_api.py usr/lib/python3.14/dist-packages/iotbx/pdb/xray_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/ usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/remediator.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/tst_remediator.py usr/lib/python3.14/dist-packages/iotbx/programs/ usr/lib/python3.14/dist-packages/iotbx/programs/__init__.py usr/lib/python3.14/dist-packages/iotbx/programs/box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/programs/split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/programs/unique_with_biomt.py usr/lib/python3.14/dist-packages/iotbx/regression/ usr/lib/python3.14/dist-packages/iotbx/regression/__init__.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_add_conformations.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_all_chain_ids.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_atom_selections_10k.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_bioinformatics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cif_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cli_parser.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_csv_utils.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_data_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_data_plots.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_examples.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_extract_xtal_data.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_fetch.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_file_reader.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_generate_n_char_string.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_group_rounding.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_id_str.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_lattice_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager_wrapping.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_4.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_tools.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_miller_sort_asu.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_input.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_multimodel.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_segids.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mrc_io.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mtz_as_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_patterson.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_as_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_as_fasta.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_cif_cells.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_link_records.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_phases.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_phil.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_poscar.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_utils.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_statistics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reindex.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_restraints_merge.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_show_systematic_absences.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_simple_map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_simple_parser.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_sort_atoms.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_split_models.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_wildcard.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_xray_scale.py usr/lib/python3.14/dist-packages/iotbx/regression/utils.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/ usr/lib/python3.14/dist-packages/iotbx/regression/ncs/__init__.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_input.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py usr/lib/python3.14/dist-packages/iotbx/scalepack/ usr/lib/python3.14/dist-packages/iotbx/scalepack/__init__.py usr/lib/python3.14/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py usr/lib/python3.14/dist-packages/iotbx/scalepack/merge.py usr/lib/python3.14/dist-packages/iotbx/scalepack/no_merge_original_index.py usr/lib/python3.14/dist-packages/iotbx/scalepack/space_group_dictionary.py usr/lib/python3.14/dist-packages/iotbx/scalepack/tst_merge.py usr/lib/python3.14/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py usr/lib/python3.14/dist-packages/iotbx/shelx/ usr/lib/python3.14/dist-packages/iotbx/shelx/__init__.py usr/lib/python3.14/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py usr/lib/python3.14/dist-packages/iotbx/shelx/errors.py usr/lib/python3.14/dist-packages/iotbx/shelx/fcf.py usr/lib/python3.14/dist-packages/iotbx/shelx/fvar_encoding.py usr/lib/python3.14/dist-packages/iotbx/shelx/hklf.py usr/lib/python3.14/dist-packages/iotbx/shelx/lexer.py usr/lib/python3.14/dist-packages/iotbx/shelx/parsers.py usr/lib/python3.14/dist-packages/iotbx/shelx/tokens.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_fvar_encoding.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_hklf.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_lex_parse_build.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_writer.py usr/lib/python3.14/dist-packages/iotbx/shelx/write_ins.py usr/lib/python3.14/dist-packages/iotbx/shelx/writer.py usr/lib/python3.14/dist-packages/iotbx/solve/ usr/lib/python3.14/dist-packages/iotbx/solve/__init__.py usr/lib/python3.14/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py usr/lib/python3.14/dist-packages/iotbx/solve/fpfm_reader.py usr/lib/python3.14/dist-packages/iotbx/xds/ usr/lib/python3.14/dist-packages/iotbx/xds/__init__.py usr/lib/python3.14/dist-packages/iotbx/xds/blank_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/correction.py usr/lib/python3.14/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py usr/lib/python3.14/dist-packages/iotbx/xds/gain_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/geometry.py usr/lib/python3.14/dist-packages/iotbx/xds/integrate_hkl.py usr/lib/python3.14/dist-packages/iotbx/xds/read_ascii.py usr/lib/python3.14/dist-packages/iotbx/xds/spot_xds.py usr/lib/python3.14/dist-packages/iotbx/xds/xds_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/xds_inp.py usr/lib/python3.14/dist-packages/iotbx/xds/xparm.py usr/lib/python3.14/dist-packages/iotbx/xplor/ usr/lib/python3.14/dist-packages/iotbx/xplor/__init__.py usr/lib/python3.14/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py usr/lib/python3.14/dist-packages/iotbx/xplor/ext.py usr/lib/python3.14/dist-packages/iotbx/xplor/map.py usr/lib/python3.14/dist-packages/iotbx/xplor/tst_xplormap.py usr/lib/python3.14/dist-packages/libtbx/ usr/lib/python3.14/dist-packages/libtbx/__init__.py usr/lib/python3.14/dist-packages/libtbx/assert_utils.py usr/lib/python3.14/dist-packages/libtbx/binary_search.py usr/lib/python3.14/dist-packages/libtbx/callbacks.py usr/lib/python3.14/dist-packages/libtbx/citations.py usr/lib/python3.14/dist-packages/libtbx/clear_paths.py usr/lib/python3.14/dist-packages/libtbx/cli.py usr/lib/python3.14/dist-packages/libtbx/cluster.py usr/lib/python3.14/dist-packages/libtbx/clusterTests.py usr/lib/python3.14/dist-packages/libtbx/code_analysis.py usr/lib/python3.14/dist-packages/libtbx/complex_math.py usr/lib/python3.14/dist-packages/libtbx/configure.py usr/lib/python3.14/dist-packages/libtbx/console_utils.py usr/lib/python3.14/dist-packages/libtbx/containers.py usr/lib/python3.14/dist-packages/libtbx/cpp_function_name.py usr/lib/python3.14/dist-packages/libtbx/crossmingw.py usr/lib/python3.14/dist-packages/libtbx/dlite.py usr/lib/python3.14/dist-packages/libtbx/easy_mp.py usr/lib/python3.14/dist-packages/libtbx/easy_pickle.py usr/lib/python3.14/dist-packages/libtbx/easy_profile.py usr/lib/python3.14/dist-packages/libtbx/easy_run.py usr/lib/python3.14/dist-packages/libtbx/env_config.py usr/lib/python3.14/dist-packages/libtbx/file_clutter.py usr/lib/python3.14/dist-packages/libtbx/find_reference_cycles.py usr/lib/python3.14/dist-packages/libtbx/forward_compatibility.py usr/lib/python3.14/dist-packages/libtbx/introspection.py usr/lib/python3.14/dist-packages/libtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/libtbx/load_env.py usr/lib/python3.14/dist-packages/libtbx/log.py usr/lib/python3.14/dist-packages/libtbx/math_utils.py usr/lib/python3.14/dist-packages/libtbx/metric_prefixes.py usr/lib/python3.14/dist-packages/libtbx/mpi4py.py usr/lib/python3.14/dist-packages/libtbx/object_oriented_patterns.py usr/lib/python3.14/dist-packages/libtbx/objgraph.py usr/lib/python3.14/dist-packages/libtbx/option_parser.py usr/lib/python3.14/dist-packages/libtbx/path.py usr/lib/python3.14/dist-packages/libtbx/pkg_utils.py usr/lib/python3.14/dist-packages/libtbx/program_template.py usr/lib/python3.14/dist-packages/libtbx/progress.py usr/lib/python3.14/dist-packages/libtbx/pyframe.py usr/lib/python3.14/dist-packages/libtbx/pyplot.py usr/lib/python3.14/dist-packages/libtbx/python_code_parsing.py usr/lib/python3.14/dist-packages/libtbx/resource_monitor.py usr/lib/python3.14/dist-packages/libtbx/run_tests.py usr/lib/python3.14/dist-packages/libtbx/runtime_utils.py usr/lib/python3.14/dist-packages/libtbx/simplexml.py usr/lib/python3.14/dist-packages/libtbx/smart_open.py usr/lib/python3.14/dist-packages/libtbx/start_print_trace.py usr/lib/python3.14/dist-packages/libtbx/str_utils.py usr/lib/python3.14/dist-packages/libtbx/subprocess_with_fixes.py usr/lib/python3.14/dist-packages/libtbx/table_utils.py usr/lib/python3.14/dist-packages/libtbx/thread_utils.py usr/lib/python3.14/dist-packages/libtbx/topological_sort.py usr/lib/python3.14/dist-packages/libtbx/try_hello_world_c.py usr/lib/python3.14/dist-packages/libtbx/tst_add_docstrings_with_ai.py usr/lib/python3.14/dist-packages/libtbx/tst_binary_search.py usr/lib/python3.14/dist-packages/libtbx/tst_citations.py usr/lib/python3.14/dist-packages/libtbx/tst_containers.py usr/lib/python3.14/dist-packages/libtbx/tst_dlite.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp_multicore.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp_state.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_pickle.py usr/lib/python3.14/dist-packages/libtbx/tst_find_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/tst_fully_buffered_timeout.py usr/lib/python3.14/dist-packages/libtbx/tst_mahalanobis.py usr/lib/python3.14/dist-packages/libtbx/tst_math_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_object_oriented_patterns.py usr/lib/python3.14/dist-packages/libtbx/tst_path.py usr/lib/python3.14/dist-packages/libtbx/tst_program_template.py usr/lib/python3.14/dist-packages/libtbx/tst_python_code_parsing.py usr/lib/python3.14/dist-packages/libtbx/tst_representation.py usr/lib/python3.14/dist-packages/libtbx/tst_run_tests_parallel_retry.py usr/lib/python3.14/dist-packages/libtbx/tst_run_tests_parallel_unique_dirs.py usr/lib/python3.14/dist-packages/libtbx/tst_runtime_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_scheduling.py usr/lib/python3.14/dist-packages/libtbx/tst_str_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_thread_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_topological_sort.py usr/lib/python3.14/dist-packages/libtbx/tst_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_version.py usr/lib/python3.14/dist-packages/libtbx/tst_word_index_generator.py usr/lib/python3.14/dist-packages/libtbx/tst_xmlrpc_utils.py usr/lib/python3.14/dist-packages/libtbx/utils.py usr/lib/python3.14/dist-packages/libtbx/version.py usr/lib/python3.14/dist-packages/libtbx/wingide.py usr/lib/python3.14/dist-packages/libtbx/word_index_generator.py usr/lib/python3.14/dist-packages/libtbx/xmlrpc_server_example.py usr/lib/python3.14/dist-packages/libtbx/xmlrpc_utils.py usr/lib/python3.14/dist-packages/libtbx/auto_build/ usr/lib/python3.14/dist-packages/libtbx/auto_build/__init__.py usr/lib/python3.14/dist-packages/libtbx/auto_build/bootstrap.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_mac_app.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_mac_pkg.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_windows_exe.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_windows_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_base_packages.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_conda.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_distribution.py usr/lib/python3.14/dist-packages/libtbx/auto_build/installer_utils.py usr/lib/python3.14/dist-packages/libtbx/auto_build/make_bundle.py usr/lib/python3.14/dist-packages/libtbx/auto_build/package_defs.py usr/lib/python3.14/dist-packages/libtbx/auto_build/plus_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/regenerate_module_files.py usr/lib/python3.14/dist-packages/libtbx/auto_build/rpath.py usr/lib/python3.14/dist-packages/libtbx/auto_build/setup_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py usr/lib/python3.14/dist-packages/libtbx/bundle/ usr/lib/python3.14/dist-packages/libtbx/bundle/__init__.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_all.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_build_libtbx.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_runtime_sources.py usr/lib/python3.14/dist-packages/libtbx/bundle/install_bat.py usr/lib/python3.14/dist-packages/libtbx/bundle/install_csh.py usr/lib/python3.14/dist-packages/libtbx/bundle/utils.py usr/lib/python3.14/dist-packages/libtbx/command_line/ usr/lib/python3.14/dist-packages/libtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/libtbx/command_line/add_docstrings_with_ai.py usr/lib/python3.14/dist-packages/libtbx/command_line/analyse_code_comments.py usr/lib/python3.14/dist-packages/libtbx/command_line/any2unix.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_line_count.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_not_show_diff.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin_ends_with.py usr/lib/python3.14/dist-packages/libtbx/command_line/bootstrap.py usr/lib/python3.14/dist-packages/libtbx/command_line/bundle_as_exe.py usr/lib/python3.14/dist-packages/libtbx/command_line/cctbx_chunk.py usr/lib/python3.14/dist-packages/libtbx/command_line/check_libcpp.py usr/lib/python3.14/dist-packages/libtbx/command_line/clean_clutter.py usr/lib/python3.14/dist-packages/libtbx/command_line/clear_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_install_script_bat.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_installer.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_mac_app.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_selfx.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_unzipsfx.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_windows_exe.py usr/lib/python3.14/dist-packages/libtbx/command_line/dtrace.py usr/lib/python3.14/dist-packages/libtbx/command_line/easy_qsub.py usr/lib/python3.14/dist-packages/libtbx/command_line/env_run.py usr/lib/python3.14/dist-packages/libtbx/command_line/epydoc_run.py usr/lib/python3.14/dist-packages/libtbx/command_line/extract_code_from_txt.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_clutter.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_files.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_in_repositories.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_old_style_classes.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_pdb_mmcif_problems.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_reserved_names.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_under_build.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_untested.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_unused_imports_crude.py usr/lib/python3.14/dist-packages/libtbx/command_line/git_avoid_merges.py usr/lib/python3.14/dist-packages/libtbx/command_line/help.py usr/lib/python3.14/dist-packages/libtbx/command_line/import_all_ext.py usr/lib/python3.14/dist-packages/libtbx/command_line/import_all_python.py usr/lib/python3.14/dist-packages/libtbx/command_line/install.py usr/lib/python3.14/dist-packages/libtbx/command_line/install_conda.py usr/lib/python3.14/dist-packages/libtbx/command_line/ipython_shell_start.py usr/lib/python3.14/dist-packages/libtbx/command_line/line_count.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_files.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_modules.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py usr/lib/python3.14/dist-packages/libtbx/command_line/make_dist.py usr/lib/python3.14/dist-packages/libtbx/command_line/make_sphinx_html.py usr/lib/python3.14/dist-packages/libtbx/command_line/nequal.py usr/lib/python3.14/dist-packages/libtbx/command_line/parallel_simple.py usr/lib/python3.14/dist-packages/libtbx/command_line/path_utility.py usr/lib/python3.14/dist-packages/libtbx/command_line/phil.py usr/lib/python3.14/dist-packages/libtbx/command_line/prime_factors_of.py usr/lib/python3.14/dist-packages/libtbx/command_line/printenv.py usr/lib/python3.14/dist-packages/libtbx/command_line/py_compile_all.py usr/lib/python3.14/dist-packages/libtbx/command_line/raise_exception_for_testing.py usr/lib/python3.14/dist-packages/libtbx/command_line/reindent.py usr/lib/python3.14/dist-packages/libtbx/command_line/remote_processing.py usr/lib/python3.14/dist-packages/libtbx/command_line/remove_tree.py usr/lib/python3.14/dist-packages/libtbx/command_line/remove_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/command_line/resource_monitor_plot.py usr/lib/python3.14/dist-packages/libtbx/command_line/run_pickled_function.py usr/lib/python3.14/dist-packages/libtbx/command_line/run_tests_parallel.py usr/lib/python3.14/dist-packages/libtbx/command_line/scons.py usr/lib/python3.14/dist-packages/libtbx/command_line/seconds_since_the_epoch.py usr/lib/python3.14/dist-packages/libtbx/command_line/sge_available_slots.py usr/lib/python3.14/dist-packages/libtbx/command_line/sge_qstat_counts.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_all_on_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_bin_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_build_options.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_build_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_but_no_repr.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_commands.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_date_and_time.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_dist_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_env.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_environ_usage.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_full_command_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_host_and_user.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_include_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_lib_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_module_dependencies.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_number_of_processors.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_numeric_version.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_numpy_version.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_python_dependencies.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_python_sys_executable.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_pythonpath.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_repository_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_tests.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_variable_names.py usr/lib/python3.14/dist-packages/libtbx/command_line/sphinx_build.py usr/lib/python3.14/dist-packages/libtbx/command_line/start_binary_bundle.py usr/lib/python3.14/dist-packages/libtbx/command_line/start_process.py usr/lib/python3.14/dist-packages/libtbx/command_line/wait_for_file.py usr/lib/python3.14/dist-packages/libtbx/development/ usr/lib/python3.14/dist-packages/libtbx/development/__init__.py usr/lib/python3.14/dist-packages/libtbx/development/except_Exception.py usr/lib/python3.14/dist-packages/libtbx/development/timers.py usr/lib/python3.14/dist-packages/libtbx/development/xcode_build_phase.py usr/lib/python3.14/dist-packages/libtbx/langchain/ usr/lib/python3.14/dist-packages/libtbx/langchain/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/phenix_knowledge.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_build_db.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_inspect_db.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_query_docs.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/ usr/lib/python3.14/dist-packages/libtbx/langchain/agent/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/advice_preprocessor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/api_client.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/best_files_tracker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/command_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/command_postprocessor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/config_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/contract.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/directive_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/directive_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/display_data_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/docs_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/dry_run_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/error_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/error_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/event_formatter.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/event_log.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/failure_diagnoser.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/file_metadata.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/file_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/format_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/gate_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/generate_logic_doc.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/generate_safety_docs.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph_nodes.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/hypothesis_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/intent_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/kb_tags.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/log_section_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/metric_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/metrics_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/nl_to_phil.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/pattern_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/perceive_checks.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/phenix_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/phil_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/placement_checker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/plan_generator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/planner.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/program_registry.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/program_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/rate_limit_handler.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/rules_selector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/sanity_checker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/session.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/session_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/strategy_memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/structure_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/template_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/thinking_agent.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/transport.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/tst_agent_enhancements.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/validation_history.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/validation_inspector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/workflow_engine.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/workflow_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/yaml_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/ usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/agent_session_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/log_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/state_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/summarizer.py usr/lib/python3.14/dist-packages/libtbx/langchain/commands/ usr/lib/python3.14/dist-packages/libtbx/langchain/commands/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/commands/base.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/ usr/lib/python3.14/dist-packages/libtbx/langchain/core/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/llm.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/types.py usr/lib/python3.14/dist-packages/libtbx/langchain/examples/ usr/lib/python3.14/dist-packages/libtbx/langchain/examples/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/ usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/api_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/explanation_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/html_report_template.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/kb_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/metric_patterns.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/phenix_programs.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/plan_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/plan_template_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/program_registration.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/prompts_hybrid.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/summary_display.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/thinking_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/yaml_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/ usr/lib/python3.14/dist-packages/libtbx/langchain/rag/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/document_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/retriever.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/vector_store.py usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/ usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/base.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/analyze_tutorial_runs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/audit_phase_rename.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/run_all_tests.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/test_api_keys.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_abort_message_all_stops.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_action_item_1.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_advice_preprocessing.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_api_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_audit_fixes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autosol_bugs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_backward_compat.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_best_files_tracker.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_command_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_contract_compliance.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_copies_tracking.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_decision_flow.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_diagnosed_failure_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directives_integration.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_display_data_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_docs_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_dry_run.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_error_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_error_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_event_formatter_file_categories.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_event_system.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_explanation_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_fabricated_stop_condition.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_categorization.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_fix_verification.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_gate_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_hardcoded_cleanup.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_history_analysis.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_hypothesis_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_integration.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_intent_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_langchain_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_log_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_metric_patterns.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_metrics_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_mtz_crosscheck.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_n_bugs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_new_programs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_old_client_compat.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_pattern_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_perceive_stop_checks.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase0_static_audit.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase1_contract_gaps.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase2_path_consistency.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase3_bug5.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase3_serialization_symmetry.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase4_history_flags.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase5_error_classification.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase6_category_consumer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase7_routing_simulation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase8_command_building.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase9_llm_perturbation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phaser_multimodel.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phil_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_plan_generator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_plan_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_program_registration.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_sanity_checker.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_scenario_tracer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_session_directives.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_session_summary.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_session_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_shared_code_imports.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_silent_stop_abort_messages.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_state_serialization.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_condition_fix.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_reason_codes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_reason_prompt.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_strategy_memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_structure_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_summary_display.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_template.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_thinking_agent.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_thinking_defense.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_transport.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_v112_13_fixes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validate_file_overrides.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validation_history.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_workflow_complete_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_workflow_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_yaml_config.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_yaml_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/integration/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/integration/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/ usr/lib/python3.14/dist-packages/libtbx/langchain/utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/query.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/run_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/text_processing.py usr/lib/python3.14/dist-packages/libtbx/langchain/validation/ usr/lib/python3.14/dist-packages/libtbx/langchain/validation/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/validation/base.py usr/lib/python3.14/dist-packages/libtbx/langchain/validation/core_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/validation/mtz_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/validation/phenix_refine.py usr/lib/python3.14/dist-packages/libtbx/langchain/validation/registry.py usr/lib/python3.14/dist-packages/libtbx/phil/ usr/lib/python3.14/dist-packages/libtbx/phil/__init__.py usr/lib/python3.14/dist-packages/libtbx/phil/command_line.py usr/lib/python3.14/dist-packages/libtbx/phil/experimental.py usr/lib/python3.14/dist-packages/libtbx/phil/gui_objects.py usr/lib/python3.14/dist-packages/libtbx/phil/interface.py usr/lib/python3.14/dist-packages/libtbx/phil/parser.py usr/lib/python3.14/dist-packages/libtbx/phil/tokenizer.py usr/lib/python3.14/dist-packages/libtbx/phil/tst.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_experimental.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_interface.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_tokenizer.py usr/lib/python3.14/dist-packages/libtbx/program_utils/ usr/lib/python3.14/dist-packages/libtbx/program_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/program_utils/result.py usr/lib/python3.14/dist-packages/libtbx/program_utils/statistics_info.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/ usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/communication.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/generic.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/looping.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/lsf.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/pbs_utils.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/remote.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/scheduling.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/scheduling_helpers.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/sge_utils.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/tst.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/ usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/__init__.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/errors.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/polling.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/status.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/submission.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/transfer.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/util.py usr/lib/python3.14/dist-packages/libtbx/scheduling/ usr/lib/python3.14/dist-packages/libtbx/scheduling/__init__.py usr/lib/python3.14/dist-packages/libtbx/scheduling/cluster_handler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/file_queue.py usr/lib/python3.14/dist-packages/libtbx/scheduling/job_scheduler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/mainthread.py usr/lib/python3.14/dist-packages/libtbx/scheduling/mp_handler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/parallel_for.py usr/lib/python3.14/dist-packages/libtbx/scheduling/philgen.py usr/lib/python3.14/dist-packages/libtbx/scheduling/process_pool.py usr/lib/python3.14/dist-packages/libtbx/scheduling/result.py usr/lib/python3.14/dist-packages/libtbx/scheduling/shared_resource.py usr/lib/python3.14/dist-packages/libtbx/scheduling/socket_queue.py usr/lib/python3.14/dist-packages/libtbx/scheduling/stacktrace.py usr/lib/python3.14/dist-packages/libtbx/scheduling/thread_handler.py usr/lib/python3.14/dist-packages/libtbx/server/ usr/lib/python3.14/dist-packages/libtbx/server/FileClient.py usr/lib/python3.14/dist-packages/libtbx/server/FileServer.py usr/lib/python3.14/dist-packages/libtbx/server/FileSocket.py usr/lib/python3.14/dist-packages/libtbx/server/SocketServer.py usr/lib/python3.14/dist-packages/libtbx/server/StartServer.py usr/lib/python3.14/dist-packages/libtbx/server/__init__.py usr/lib/python3.14/dist-packages/libtbx/sphinx/ usr/lib/python3.14/dist-packages/libtbx/sphinx/__init__.py usr/lib/python3.14/dist-packages/libtbx/sphinx/phil.py usr/lib/python3.14/dist-packages/libtbx/sphinx/pubmed.py usr/lib/python3.14/dist-packages/libtbx/sphinx/python_string.py usr/lib/python3.14/dist-packages/libtbx/test_utils/ usr/lib/python3.14/dist-packages/libtbx/test_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/test_utils/parallel.py usr/lib/python3.14/dist-packages/mmtbx/ usr/lib/python3.14/dist-packages/mmtbx/__init__.py usr/lib/python3.14/dist-packages/mmtbx/arrays.py usr/lib/python3.14/dist-packages/mmtbx/clashes.py usr/lib/python3.14/dist-packages/mmtbx/domains_from_pae.py usr/lib/python3.14/dist-packages/mmtbx/f_model_info.py usr/lib/python3.14/dist-packages/mmtbx/find_peaks.py usr/lib/python3.14/dist-packages/mmtbx/grow_density.py usr/lib/python3.14/dist-packages/mmtbx/invariant_domain.py usr/lib/python3.14/dist-packages/mmtbx/lattice.py usr/lib/python3.14/dist-packages/mmtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/mmtbx/map_tools.py usr/lib/python3.14/dist-packages/mmtbx/model_vs_data.py usr/lib/python3.14/dist-packages/mmtbx/msa.py usr/lib/python3.14/dist-packages/mmtbx/pdb_distances.py usr/lib/python3.14/dist-packages/mmtbx/pdb_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/proq2.py usr/lib/python3.14/dist-packages/mmtbx/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/resolve_resources.py usr/lib/python3.14/dist-packages/mmtbx/restraints.py usr/lib/python3.14/dist-packages/mmtbx/run_tests.py usr/lib/python3.14/dist-packages/mmtbx/superpose.py usr/lib/python3.14/dist-packages/mmtbx/xmanip.py usr/lib/python3.14/dist-packages/mmtbx/xmanip_tasks.py usr/lib/python3.14/dist-packages/mmtbx/alignment/ usr/lib/python3.14/dist-packages/mmtbx/alignment/__init__.py usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/ usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/__init__.py usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/tst.py usr/lib/python3.14/dist-packages/mmtbx/building/ usr/lib/python3.14/dist-packages/mmtbx/building/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/building/extend_sidechains.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_idealization.py usr/lib/python3.14/dist-packages/mmtbx/building/merge_models.py usr/lib/python3.14/dist-packages/mmtbx/building/minimize_chain.py usr/lib/python3.14/dist-packages/mmtbx/building/tst_extend_sidechains.py usr/lib/python3.14/dist-packages/mmtbx/building/tst_extend_sidechains_2.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/ usr/lib/python3.14/dist-packages/mmtbx/building/ligands/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/lifi.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/tst_00.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/ usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/ccd.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/starting_conformations.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/utils.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/ usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/__init__.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/example.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/example2.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/mosaic.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/scaler.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_scaler.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/ usr/lib/python3.14/dist-packages/mmtbx/chemical_components/__init__.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/cif_parser.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/tst.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ usr/lib/python3.14/dist-packages/mmtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/mmtbx/command_line/altloc_remediate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/angle.py usr/lib/python3.14/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py usr/lib/python3.14/dist-packages/mmtbx/command_line/arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/command_line/atom_valence_simple.py usr/lib/python3.14/dist-packages/mmtbx/command_line/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cablam.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cc_star.py usr/lib/python3.14/dist-packages/mmtbx/command_line/chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cif_as_mtz.py usr/lib/python3.14/dist-packages/mmtbx/command_line/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/command_line/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/comparama.py usr/lib/python3.14/dist-packages/mmtbx/command_line/debug_riding.py usr/lib/python3.14/dist-packages/mmtbx/command_line/density_modification.py usr/lib/python3.14/dist-packages/mmtbx/command_line/development_aev.py usr/lib/python3.14/dist-packages/mmtbx/command_line/development_fem.py usr/lib/python3.14/dist-packages/mmtbx/command_line/distance_difference.py usr/lib/python3.14/dist-packages/mmtbx/command_line/dynamics.py usr/lib/python3.14/dist-packages/mmtbx/command_line/electrons.py usr/lib/python3.14/dist-packages/mmtbx/command_line/emringer.py usr/lib/python3.14/dist-packages/mmtbx/command_line/emringer_score.py usr/lib/python3.14/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py usr/lib/python3.14/dist-packages/mmtbx/command_line/f000.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fab_elbow_angle.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fake_f_obs.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fetch_pdb.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_peaks_holes.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_residue_in_pdb.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_tls_groups.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fmodel.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/grow_density.py usr/lib/python3.14/dist-packages/mmtbx/command_line/hbond.py usr/lib/python3.14/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py usr/lib/python3.14/dist-packages/mmtbx/command_line/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/hydrogenate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/kinemage.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ligand_restraints_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_box.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_comparison.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_to_model_histogram.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_to_structure_factors.py usr/lib/python3.14/dist-packages/mmtbx/command_line/maps.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mask.py usr/lib/python3.14/dist-packages/mmtbx/command_line/massage_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/matthews.py usr/lib/python3.14/dist-packages/mmtbx/command_line/maximum_entropy_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_model_distances.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/command_line/models_as_chains.py usr/lib/python3.14/dist-packages/mmtbx/command_line/molprobity.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mtz2map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/next_gen_atom_typing.py usr/lib/python3.14/dist-packages/mmtbx/command_line/nonbonded_overlaps.py usr/lib/python3.14/dist-packages/mmtbx/command_line/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdb_atom_selection.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/command_line/perigee.py usr/lib/python3.14/dist-packages/mmtbx/command_line/plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/command_line/polder.py usr/lib/python3.14/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py usr/lib/python3.14/dist-packages/mmtbx/command_line/probe2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/command_line/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/prune_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/command_line/r_factor_statistics.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rank_scale_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/real_space_diff_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reduce2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/command_line/remove_outliers.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rigid_bond_test.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ringer.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_puckers.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_suites.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/search_pdb_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/command_line/secondary_structure_restraints.py usr/lib/python3.14/dist-packages/mmtbx/command_line/secondary_structure_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py usr/lib/python3.14/dist-packages/mmtbx/command_line/sisa.py usr/lib/python3.14/dist-packages/mmtbx/command_line/sort_hetatms.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/suitename.py usr/lib/python3.14/dist-packages/mmtbx/command_line/suitename_old.py usr/lib/python3.14/dist-packages/mmtbx/command_line/super.py usr/lib/python3.14/dist-packages/mmtbx/command_line/superpose.py usr/lib/python3.14/dist-packages/mmtbx/command_line/taam_minus_iam.py usr/lib/python3.14/dist-packages/mmtbx/command_line/table_one.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls_analysis.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/command_line/undowser.py usr/lib/python3.14/dist-packages/mmtbx/command_line/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validate_H_cl_app.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validation_summary.py usr/lib/python3.14/dist-packages/mmtbx/command_line/verify_mon_lib_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/water_b_factors.py usr/lib/python3.14/dist-packages/mmtbx/command_line/where_is_that_cif_file.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xmanip.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xtriage.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/ usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/__init__.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/enol_peptide_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/histidines.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/mcl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/omega.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/omega_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/rotamers.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_enol_peptide.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/utils.py usr/lib/python3.14/dist-packages/mmtbx/den/ usr/lib/python3.14/dist-packages/mmtbx/den/__init__.py usr/lib/python3.14/dist-packages/mmtbx/den/plot_weights.py usr/lib/python3.14/dist-packages/mmtbx/den/refinement.py usr/lib/python3.14/dist-packages/mmtbx/density_modification/ usr/lib/python3.14/dist-packages/mmtbx/density_modification/__init__.py usr/lib/python3.14/dist-packages/mmtbx/density_modification/tst_density_modification.py usr/lib/python3.14/dist-packages/mmtbx/disorder/ usr/lib/python3.14/dist-packages/mmtbx/disorder/__init__.py usr/lib/python3.14/dist-packages/mmtbx/disorder/analyze_model.py usr/lib/python3.14/dist-packages/mmtbx/disorder/backbone.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst_analyze_model.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst_backbone.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/ usr/lib/python3.14/dist-packages/mmtbx/dynamics/__init__.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/cartesian_dynamics.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/constants.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/ensemble_cd.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/simulated_annealing.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/tst_sa.py usr/lib/python3.14/dist-packages/mmtbx/f_model/ usr/lib/python3.14/dist-packages/mmtbx/f_model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/f_model/f_model.py usr/lib/python3.14/dist-packages/mmtbx/f_model/f_model_info.py usr/lib/python3.14/dist-packages/mmtbx/geometry/ usr/lib/python3.14/dist-packages/mmtbx/geometry/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry/altloc.py usr/lib/python3.14/dist-packages/mmtbx/geometry/asa.py usr/lib/python3.14/dist-packages/mmtbx/geometry/clash.py usr/lib/python3.14/dist-packages/mmtbx/geometry/indexing.py usr/lib/python3.14/dist-packages/mmtbx/geometry/shared_types.py usr/lib/python3.14/dist-packages/mmtbx/geometry/sphere_surface_sampling.py usr/lib/python3.14/dist-packages/mmtbx/geometry/topology.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/ usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/afitt.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/c_beta.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/external.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/mopac_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/orca_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/qi_utils.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/qm_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/reference.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/ usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/ usr/lib/python3.14/dist-packages/mmtbx/hydrogens/__init__.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/build_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/connectivity.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/find.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/neutron_utils.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/parameterization.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/riding.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_0.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_6.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_7.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_8.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_9.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_time.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_connectivity.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_manager.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_validate_H.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/validate_H.py usr/lib/python3.14/dist-packages/mmtbx/ias/ usr/lib/python3.14/dist-packages/mmtbx/ias/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ias/tst_ias.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/ usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/__init__.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/all_his.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/tst.py usr/lib/python3.14/dist-packages/mmtbx/ions/ usr/lib/python3.14/dist-packages/mmtbx/ions/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ions/build.py usr/lib/python3.14/dist-packages/mmtbx/ions/environment.py usr/lib/python3.14/dist-packages/mmtbx/ions/geometry.py usr/lib/python3.14/dist-packages/mmtbx/ions/halides.py usr/lib/python3.14/dist-packages/mmtbx/ions/identify.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_environment.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_geometries.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_parameters.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_approx_zn.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_ca.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_ca_svm.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_k.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_mg.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pickle.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_symmetry_axis.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_validate_ca.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_validate_mg.py usr/lib/python3.14/dist-packages/mmtbx/ions/utils.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/ usr/lib/python3.14/dist-packages/mmtbx/ions/svm/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/dump_sites.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/tst_classifier_01.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/tst_classifier_02.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/utils.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ usr/lib/python3.14/dist-packages/mmtbx/kinemage/__init__.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/nrubs.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/validation.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ usr/lib/python3.14/dist-packages/mmtbx/ligands/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ligands/chemistry.py usr/lib/python3.14/dist-packages/mmtbx/ligands/elbow_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/electrons.py usr/lib/python3.14/dist-packages/mmtbx/ligands/hierarchy_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/rdkit_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ready_set_basics.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ready_set_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_electron_scripting.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_ready_set_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_xtal_screens.py usr/lib/python3.14/dist-packages/mmtbx/ligands/xtal_screens.py usr/lib/python3.14/dist-packages/mmtbx/maps/ usr/lib/python3.14/dist-packages/mmtbx/maps/__init__.py usr/lib/python3.14/dist-packages/mmtbx/maps/composite_omit_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/correlation.py usr/lib/python3.14/dist-packages/mmtbx/maps/fem.py usr/lib/python3.14/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/kick.py usr/lib/python3.14/dist-packages/mmtbx/maps/map_model_cc.py usr/lib/python3.14/dist-packages/mmtbx/maps/mtriage.py usr/lib/python3.14/dist-packages/mmtbx/maps/polder.py usr/lib/python3.14/dist-packages/mmtbx/maps/superpose.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_correlation.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py usr/lib/python3.14/dist-packages/mmtbx/maps/utils.py usr/lib/python3.14/dist-packages/mmtbx/maps/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/masks/ usr/lib/python3.14/dist-packages/mmtbx/masks/__init__.py usr/lib/python3.14/dist-packages/mmtbx/masks/tst_asu_mask.py usr/lib/python3.14/dist-packages/mmtbx/masks/tst_masks.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/ usr/lib/python3.14/dist-packages/mmtbx/max_lik/__init__.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/max_like_non_uniform.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/maxlik.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/tst_max_lik.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/tst_maxlik.py usr/lib/python3.14/dist-packages/mmtbx/model/ usr/lib/python3.14/dist-packages/mmtbx/model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/model/model.py usr/lib/python3.14/dist-packages/mmtbx/model/restraints.py usr/lib/python3.14/dist-packages/mmtbx/model/statistics.py usr/lib/python3.14/dist-packages/mmtbx/model/utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/ usr/lib/python3.14/dist-packages/mmtbx/monomer_library/__init__.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/bondlength_defaults.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/cif_types.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/conv_v2_v3.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/geostd_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/glyco_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/idealized_aa.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_mixins.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_setup.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/mmtbx_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/rotamer_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/server.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_chg.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_cif_types.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_linking.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_motif.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_paral_geo.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_4.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_5.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_selection.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_server.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_user_supplied_library.py usr/lib/python3.14/dist-packages/mmtbx/nci/ usr/lib/python3.14/dist-packages/mmtbx/nci/__init__.py usr/lib/python3.14/dist-packages/mmtbx/nci/data_filtering.py usr/lib/python3.14/dist-packages/mmtbx/nci/hbond.py usr/lib/python3.14/dist-packages/mmtbx/nci/skew_kurt_plot.py usr/lib/python3.14/dist-packages/mmtbx/nci/tst_hbond.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ usr/lib/python3.14/dist-packages/mmtbx/ncs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ncs/cartesian_restraints.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ligands.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_params.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_search.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_utils.py usr/lib/python3.14/dist-packages/mmtbx/ncs/tncs.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/ usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/__init__.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/pair_interaction.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_00.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_01.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_02.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_03.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_04.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_05.py usr/lib/python3.14/dist-packages/mmtbx/polygon/ usr/lib/python3.14/dist-packages/mmtbx/polygon/__init__.py usr/lib/python3.14/dist-packages/mmtbx/polygon/output.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst_gui.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst_polygon_data.py usr/lib/python3.14/dist-packages/mmtbx/probe/ usr/lib/python3.14/dist-packages/mmtbx/probe/AtomTypes.py usr/lib/python3.14/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py usr/lib/python3.14/dist-packages/mmtbx/probe/Helpers.py usr/lib/python3.14/dist-packages/mmtbx/probe/__init__.py usr/lib/python3.14/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py usr/lib/python3.14/dist-packages/mmtbx/programs/ usr/lib/python3.14/dist-packages/mmtbx/programs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/programs/arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/programs/atom_selection.py usr/lib/python3.14/dist-packages/mmtbx/programs/atom_valence_simple.py usr/lib/python3.14/dist-packages/mmtbx/programs/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/programs/cablam.py usr/lib/python3.14/dist-packages/mmtbx/programs/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/programs/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/programs/chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/programs/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/programs/comparama.py usr/lib/python3.14/dist-packages/mmtbx/programs/debug_riding.py usr/lib/python3.14/dist-packages/mmtbx/programs/elbow_services.py usr/lib/python3.14/dist-packages/mmtbx/programs/emringer.py usr/lib/python3.14/dist-packages/mmtbx/programs/fetch.py usr/lib/python3.14/dist-packages/mmtbx/programs/fmodel.py usr/lib/python3.14/dist-packages/mmtbx/programs/hbond.py usr/lib/python3.14/dist-packages/mmtbx/programs/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/hydrogenate.py usr/lib/python3.14/dist-packages/mmtbx/programs/ligand_restraints_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/mask.py usr/lib/python3.14/dist-packages/mmtbx/programs/matthews.py usr/lib/python3.14/dist-packages/mmtbx/programs/model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/programs/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/programs/next_gen_atom_typing.py usr/lib/python3.14/dist-packages/mmtbx/programs/nonbonded_overlaps.py usr/lib/python3.14/dist-packages/mmtbx/programs/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/pdb_as_cif.py usr/lib/python3.14/dist-packages/mmtbx/programs/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/programs/polder.py usr/lib/python3.14/dist-packages/mmtbx/programs/prepare_pdb_deposition.py usr/lib/python3.14/dist-packages/mmtbx/programs/probe2.py usr/lib/python3.14/dist-packages/mmtbx/programs/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/programs/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/programs/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/programs/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/programs/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/programs/reduce2.py usr/lib/python3.14/dist-packages/mmtbx/programs/reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/programs/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_puckers.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_suites.py usr/lib/python3.14/dist-packages/mmtbx/programs/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/programs/ss_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/suitename.py usr/lib/python3.14/dist-packages/mmtbx/programs/suitename_old.py usr/lib/python3.14/dist-packages/mmtbx/programs/taam_minus_iam.py usr/lib/python3.14/dist-packages/mmtbx/programs/undowser.py usr/lib/python3.14/dist-packages/mmtbx/programs/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/programs/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/programs/water_b_factors.py usr/lib/python3.14/dist-packages/mmtbx/programs/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/real_space/ usr/lib/python3.14/dist-packages/mmtbx/real_space/__init__.py usr/lib/python3.14/dist-packages/mmtbx/real_space/tst.py usr/lib/python3.14/dist-packages/mmtbx/reduce/ usr/lib/python3.14/dist-packages/mmtbx/reduce/InteractionGraph.py usr/lib/python3.14/dist-packages/mmtbx/reduce/Movers.py usr/lib/python3.14/dist-packages/mmtbx/reduce/Optimizers.py usr/lib/python3.14/dist-packages/mmtbx/reduce/__init__.py usr/lib/python3.14/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ usr/lib/python3.14/dist-packages/mmtbx/refinement/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/adp_refinement.py usr/lib/python3.14/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py usr/lib/python3.14/dist-packages/mmtbx/refinement/calculators.py usr/lib/python3.14/dist-packages/mmtbx/refinement/data.py usr/lib/python3.14/dist-packages/mmtbx/refinement/energy_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py usr/lib/python3.14/dist-packages/mmtbx/refinement/geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/refinement/group.py usr/lib/python3.14/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/refinement/occupancies.py usr/lib/python3.14/dist-packages/mmtbx/refinement/orca.py usr/lib/python3.14/dist-packages/mmtbx/refinement/print_statistics.py usr/lib/python3.14/dist-packages/mmtbx/refinement/refinement_flags.py usr/lib/python3.14/dist-packages/mmtbx/refinement/restraints.py usr/lib/python3.14/dist-packages/mmtbx/refinement/rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tardy.py usr/lib/python3.14/dist-packages/mmtbx/refinement/targets.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_fit_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_group.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_group_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_misc.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_occupancy_selections.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_real_space_simple.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_refinement_flags.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/refinement/utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/weights.py usr/lib/python3.14/dist-packages/mmtbx/refinement/weights_params.py usr/lib/python3.14/dist-packages/mmtbx/refinement/wrappers.py usr/lib/python3.14/dist-packages/mmtbx/refinement/wx_tardy_pdb.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/ usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/adp.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_his.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_residue.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_residues.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_water.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/individual_sites.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/occupancy.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_weight.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/weight.py usr/lib/python3.14/dist-packages/mmtbx/regression/ usr/lib/python3.14/dist-packages/mmtbx/regression/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/make_fake_anomalous_data.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_add_h_to_water.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_adp_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_alignment.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_altloc_chain_break.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_altloc_remediate.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_angle.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cc_star.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_chain_comparison.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_chain_comparison_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_clashes.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_command_line_input.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_domains_from_pae.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_domains_from_pae_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_dynamics_cli.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_examples.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ss_structure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ss_structure_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_flipping_his.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_and_dm.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_fd.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ligand_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_loop_closure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_lrv.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_map_model_cc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_map_type_parser.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_maps_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_metal_link_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_minimize_chain.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ml_estimate.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_vs_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_models_to_from_chains.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_msa.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mtz2map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_multi_residue_class.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_origin_ids.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_3.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_4.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_box.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_ccs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_probe.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_process_predicted_model_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_prune_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rank_scale_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rdkit_utils_fragmentation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_timeout.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_regularize_from_pdb_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ribbons.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rigid_bond_test.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ringer.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sampled_model_density.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_scattering_table.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_scattering_type_registry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_schrodinger_interface.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sequence_validation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sort_hetatms.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_special_term_at_end.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_statistics_output.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_superpose.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_table_one.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validation_summary.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/ usr/lib/python3.14/dist-packages/mmtbx/regression/model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_merge.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_mtrix.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_pairs_within.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/ usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/ usr/lib/python3.14/dist-packages/mmtbx/regression/tls/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py usr/lib/python3.14/dist-packages/mmtbx/ringer/ usr/lib/python3.14/dist-packages/mmtbx/ringer/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_rolling.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_rscc.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_scoring.py usr/lib/python3.14/dist-packages/mmtbx/ringer/emringer.py usr/lib/python3.14/dist-packages/mmtbx/ringer/tst_em_rscc.py usr/lib/python3.14/dist-packages/mmtbx/ringer/tst_emringer.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ usr/lib/python3.14/dist-packages/mmtbx/rotamer/__init__.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/graphics.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/n_dim_table.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/nqh.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ramachandran_eval.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/rotamer_eval.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/sidechain_angles.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py usr/lib/python3.14/dist-packages/mmtbx/rsr/ usr/lib/python3.14/dist-packages/mmtbx/rsr/__init__.py usr/lib/python3.14/dist-packages/mmtbx/rsr/tst.py usr/lib/python3.14/dist-packages/mmtbx/scaling/ usr/lib/python3.14/dist-packages/mmtbx/scaling/__init__.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absence_likelihood.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absences.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absolute_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/basic_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/bayesian_estimator.py usr/lib/python3.14/dist-packages/mmtbx/scaling/data_statistics.py usr/lib/python3.14/dist-packages/mmtbx/scaling/fa_estimation.py usr/lib/python3.14/dist-packages/mmtbx/scaling/make_param.py usr/lib/python3.14/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py usr/lib/python3.14/dist-packages/mmtbx/scaling/matthews.py usr/lib/python3.14/dist-packages/mmtbx/scaling/mean_f_rms_f.py usr/lib/python3.14/dist-packages/mmtbx/scaling/outlier_plots.py usr/lib/python3.14/dist-packages/mmtbx/scaling/outlier_rejection.py usr/lib/python3.14/dist-packages/mmtbx/scaling/pair_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/scaling/pre_scale.py usr/lib/python3.14/dist-packages/mmtbx/scaling/random_omit.py usr/lib/python3.14/dist-packages/mmtbx/scaling/relative_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/relative_wilson.py usr/lib/python3.14/dist-packages/mmtbx/scaling/remove_outliers.py usr/lib/python3.14/dist-packages/mmtbx/scaling/sigmaa_estimation.py usr/lib/python3.14/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py usr/lib/python3.14/dist-packages/mmtbx/scaling/thorough_outlier_test.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_absences.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_massage_data.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_outlier.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_sigmaa.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_xtriage.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/twin_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/twmad_scale.py usr/lib/python3.14/dist-packages/mmtbx/scaling/xtriage.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/ usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/__init__.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/nucleic_acids.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/proteins.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/ss_validation.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst_segid.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/utils.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/ usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/__init__.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_1.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_2.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_3.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_io.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py usr/lib/python3.14/dist-packages/mmtbx/sisa/ usr/lib/python3.14/dist-packages/mmtbx/sisa/__init__.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/ usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/__init__.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_ga.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_input.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_masks.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_mtz.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_optimize.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_util.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ usr/lib/python3.14/dist-packages/mmtbx/solvent/__init__.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/solvent/map_to_water.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/suitename/ usr/lib/python3.14/dist-packages/mmtbx/suitename/__init__.py usr/lib/python3.14/dist-packages/mmtbx/suitename/diangle.py usr/lib/python3.14/dist-packages/mmtbx/suitename/dualparse.py usr/lib/python3.14/dist-packages/mmtbx/suitename/mainchain.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitealyze.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitename.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitenamedefs.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suiteninit.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suiteninput.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitenout.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suites.py usr/lib/python3.14/dist-packages/mmtbx/suitename/transdent.py usr/lib/python3.14/dist-packages/mmtbx/tls/ usr/lib/python3.14/dist-packages/mmtbx/tls/__init__.py usr/lib/python3.14/dist-packages/mmtbx/tls/analysis.py usr/lib/python3.14/dist-packages/mmtbx/tls/command_line.py usr/lib/python3.14/dist-packages/mmtbx/tls/decompose.py usr/lib/python3.14/dist-packages/mmtbx/tls/ladp.py usr/lib/python3.14/dist-packages/mmtbx/tls/optimise_amplitudes.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm10.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm11.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm12.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm13.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm14.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm15.py usr/lib/python3.14/dist-packages/mmtbx/tls/tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/tls/tools.py usr/lib/python3.14/dist-packages/mmtbx/tls/utils.py usr/lib/python3.14/dist-packages/mmtbx/twinning/ usr/lib/python3.14/dist-packages/mmtbx/twinning/__init__.py usr/lib/python3.14/dist-packages/mmtbx/twinning/probabalistic_detwinning.py usr/lib/python3.14/dist-packages/mmtbx/twinning/twin_f_model.py usr/lib/python3.14/dist-packages/mmtbx/utils/ usr/lib/python3.14/dist-packages/mmtbx/utils/__init__.py usr/lib/python3.14/dist-packages/mmtbx/utils/fab_elbow_angle.py usr/lib/python3.14/dist-packages/mmtbx/utils/grid2d.py usr/lib/python3.14/dist-packages/mmtbx/utils/ntc.py usr/lib/python3.14/dist-packages/mmtbx/utils/rotatable_bonds.py usr/lib/python3.14/dist-packages/mmtbx/utils/tst_switch_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/validation/ usr/lib/python3.14/dist-packages/mmtbx/validation/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/analyze_peptides.py usr/lib/python3.14/dist-packages/mmtbx/validation/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/validation/cablam.py usr/lib/python3.14/dist-packages/mmtbx/validation/cbd_utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/validation/chain_comparison.py usr/lib/python3.14/dist-packages/mmtbx/validation/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/validation/comparama.py usr/lib/python3.14/dist-packages/mmtbx/validation/comprehensive_residue.py usr/lib/python3.14/dist-packages/mmtbx/validation/convert_lists.py usr/lib/python3.14/dist-packages/mmtbx/validation/datasets.py usr/lib/python3.14/dist-packages/mmtbx/validation/ensembles.py usr/lib/python3.14/dist-packages/mmtbx/validation/experimental.py usr/lib/python3.14/dist-packages/mmtbx/validation/fav_lists.py usr/lib/python3.14/dist-packages/mmtbx/validation/graphics.py usr/lib/python3.14/dist-packages/mmtbx/validation/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/validation/ligands.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/model_properties.py usr/lib/python3.14/dist-packages/mmtbx/validation/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/validation/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/phi_psi_2_data.py usr/lib/python3.14/dist-packages/mmtbx/validation/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/validation/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/sequence.py usr/lib/python3.14/dist-packages/mmtbx/validation/undowser.py usr/lib/python3.14/dist-packages/mmtbx/validation/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/validation/utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/validation/waters.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/ usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/percentile_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/percentile_mpscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/table_from_json.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/ usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/ usr/lib/python3.14/dist-packages/mmtbx/validation/regression/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/run_restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cablam.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cablam_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_experimental.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_model_properties.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze_rare.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_suitename.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_undowser.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_undowser2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_waters.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/ usr/lib/python3.14/dist-packages/mmtbx/wwpdb/__init__.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/rcsb_entry_request.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/rcsb_web_services.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/tst_rcsb_entry_request.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py usr/lib/python3.14/dist-packages/omptbx/ usr/lib/python3.14/dist-packages/omptbx/__init__.py usr/lib/python3.14/dist-packages/omptbx/tst.py usr/lib/python3.14/dist-packages/qttbx/ usr/lib/python3.14/dist-packages/qttbx/__init__.py usr/lib/python3.14/dist-packages/qttbx/phil.py usr/lib/python3.14/dist-packages/qttbx/viewers/ usr/lib/python3.14/dist-packages/qttbx/viewers/__init__.py usr/lib/python3.14/dist-packages/qttbx/viewers/chimerax.py usr/lib/python3.14/dist-packages/rstbx/ usr/lib/python3.14/dist-packages/rstbx/__init__.py usr/lib/python3.14/dist-packages/rstbx/run_tests.py usr/lib/python3.14/dist-packages/rstbx/utils.py usr/lib/python3.14/dist-packages/rstbx/apps/ usr/lib/python3.14/dist-packages/rstbx/apps/__init__.py usr/lib/python3.14/dist-packages/rstbx/apps/dual_resolution_helpers.py usr/lib/python3.14/dist-packages/rstbx/apps/slip_helpers.py usr/lib/python3.14/dist-packages/rstbx/apps/spot_markup.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/ usr/lib/python3.14/dist-packages/rstbx/apps/stills/__init__.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/simple_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/stills_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/util.py usr/lib/python3.14/dist-packages/rstbx/array_family/ usr/lib/python3.14/dist-packages/rstbx/array_family/__init__.py usr/lib/python3.14/dist-packages/rstbx/array_family/flex.py usr/lib/python3.14/dist-packages/rstbx/bandpass/ usr/lib/python3.14/dist-packages/rstbx/bandpass/__init__.py usr/lib/python3.14/dist-packages/rstbx/bandpass/simulated_annealing.py usr/lib/python3.14/dist-packages/rstbx/bpcx/ usr/lib/python3.14/dist-packages/rstbx/bpcx/__init__.py usr/lib/python3.14/dist-packages/rstbx/bpcx/compare_mosflm_xds.py usr/lib/python3.14/dist-packages/rstbx/bpcx/ersatz_misset.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_positions.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_validate.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2a.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/ usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/__init__.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/detector.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py usr/lib/python3.14/dist-packages/rstbx/cftbx/ usr/lib/python3.14/dist-packages/rstbx/cftbx/__init__.py usr/lib/python3.14/dist-packages/rstbx/cftbx/coordinate_frame_converter.py usr/lib/python3.14/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py usr/lib/python3.14/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py usr/lib/python3.14/dist-packages/rstbx/command_line/ usr/lib/python3.14/dist-packages/rstbx/command_line/__init__.py usr/lib/python3.14/dist-packages/rstbx/command_line/example_viewer.py usr/lib/python3.14/dist-packages/rstbx/command_line/index.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.create.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.explore_completeness.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.solver.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.wx_display.py usr/lib/python3.14/dist-packages/rstbx/command_line/slip_viewer.py usr/lib/python3.14/dist-packages/rstbx/command_line/viewer.py usr/lib/python3.14/dist-packages/rstbx/detectors/ usr/lib/python3.14/dist-packages/rstbx/detectors/__init__.py usr/lib/python3.14/dist-packages/rstbx/detectors/silicon.py usr/lib/python3.14/dist-packages/rstbx/dials_core/ usr/lib/python3.14/dist-packages/rstbx/dials_core/__init__.py usr/lib/python3.14/dist-packages/rstbx/dials_core/integration_core.py usr/lib/python3.14/dist-packages/rstbx/diffraction/ usr/lib/python3.14/dist-packages/rstbx/diffraction/__init__.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_ewald_sphere.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_partial_derivatives.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_predict.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/ usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/__init__.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py usr/lib/python3.14/dist-packages/rstbx/dps_core/ usr/lib/python3.14/dist-packages/rstbx/dps_core/__init__.py usr/lib/python3.14/dist-packages/rstbx/dps_core/basis_choice.py usr/lib/python3.14/dist-packages/rstbx/dps_core/cell_assessment.py usr/lib/python3.14/dist-packages/rstbx/dps_core/constrainment.py usr/lib/python3.14/dist-packages/rstbx/dps_core/lepage.py usr/lib/python3.14/dist-packages/rstbx/dps_core/sampling.py usr/lib/python3.14/dist-packages/rstbx/dps_core/tst_iotbx_converter.py usr/lib/python3.14/dist-packages/rstbx/dps_core/zuoreduction.py usr/lib/python3.14/dist-packages/rstbx/indexing/ usr/lib/python3.14/dist-packages/rstbx/indexing/__init__.py usr/lib/python3.14/dist-packages/rstbx/indexing/do_index.py usr/lib/python3.14/dist-packages/rstbx/indexing/tst_auto_monoscan.py usr/lib/python3.14/dist-packages/rstbx/indexing/tst_dataset1.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/ usr/lib/python3.14/dist-packages/rstbx/indexing_api/__init__.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/basis_choice.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/force_cell.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/lattice.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/nearest_neighbor.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/outlier_detection.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/outlier_procedure.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/sampling.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/test_dps.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/tools.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/ usr/lib/python3.14/dist-packages/rstbx/new_horizons/__init__.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/index.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/oscillation_shots.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/pixel_spread.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/speckfinder.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/spot_shape.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/stats_index.py usr/lib/python3.14/dist-packages/rstbx/outlier_spots/ usr/lib/python3.14/dist-packages/rstbx/outlier_spots/__init__.py usr/lib/python3.14/dist-packages/rstbx/outlier_spots/fit_distribution.py usr/lib/python3.14/dist-packages/rstbx/phil/ usr/lib/python3.14/dist-packages/rstbx/phil/__init__.py usr/lib/python3.14/dist-packages/rstbx/phil/phil_preferences.py usr/lib/python3.14/dist-packages/rstbx/phil/preferences.py usr/lib/python3.14/dist-packages/rstbx/phil/scope.py usr/lib/python3.14/dist-packages/rstbx/simage/ usr/lib/python3.14/dist-packages/rstbx/simage/__init__.py usr/lib/python3.14/dist-packages/rstbx/simage/create.py usr/lib/python3.14/dist-packages/rstbx/simage/explore_completeness.py usr/lib/python3.14/dist-packages/rstbx/simage/integrate_crude.py usr/lib/python3.14/dist-packages/rstbx/simage/refine_uc_cr.py usr/lib/python3.14/dist-packages/rstbx/simage/run_labelit_index.py usr/lib/python3.14/dist-packages/rstbx/simage/run_spotfinder.py usr/lib/python3.14/dist-packages/rstbx/simage/solver.py usr/lib/python3.14/dist-packages/rstbx/simage/tst.py usr/lib/python3.14/dist-packages/rstbx/simage/wx_display.py usr/lib/python3.14/dist-packages/rstbx/simulation/ usr/lib/python3.14/dist-packages/rstbx/simulation/__init__.py usr/lib/python3.14/dist-packages/rstbx/simulation/constants.py usr/lib/python3.14/dist-packages/rstbx/simulation/sim_pdf.py usr/lib/python3.14/dist-packages/rstbx/simulation/sim_utils.py usr/lib/python3.14/dist-packages/rstbx/simulation/tst_xfel1_simple.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/ usr/lib/python3.14/dist-packages/rstbx/slip_viewer/__init__.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/calibration_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/pyslip.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/ring_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/score_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/slip_display.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/tile_generation.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/uc_frame.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/ usr/lib/python3.14/dist-packages/rstbx/sublattice_support/__init__.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/change_basis.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/tst_sublattice.py usr/lib/python3.14/dist-packages/rstbx/symmetry/ usr/lib/python3.14/dist-packages/rstbx/symmetry/__init__.py usr/lib/python3.14/dist-packages/rstbx/symmetry/sgtbx_adaptor.py usr/lib/python3.14/dist-packages/rstbx/symmetry/subgroup.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/ usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/__init__.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/g_gradients.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py usr/lib/python3.14/dist-packages/rstbx/viewer/ usr/lib/python3.14/dist-packages/rstbx/viewer/__init__.py usr/lib/python3.14/dist-packages/rstbx/viewer/calibration.py usr/lib/python3.14/dist-packages/rstbx/viewer/calibration_frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/controls.py usr/lib/python3.14/dist-packages/rstbx/viewer/dataset.py usr/lib/python3.14/dist-packages/rstbx/viewer/display.py usr/lib/python3.14/dist-packages/rstbx/viewer/drivers.py usr/lib/python3.14/dist-packages/rstbx/viewer/frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/indexing.py usr/lib/python3.14/dist-packages/rstbx/viewer/integration.py usr/lib/python3.14/dist-packages/rstbx/viewer/pixels3d.py usr/lib/python3.14/dist-packages/rstbx/viewer/processing.py usr/lib/python3.14/dist-packages/rstbx/viewer/results_base.py usr/lib/python3.14/dist-packages/rstbx/viewer/spotfinder_frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/spotfinder_wrap.py usr/lib/python3.14/dist-packages/rstbx/viewer/tst.py usr/lib/python3.14/dist-packages/scitbx/ usr/lib/python3.14/dist-packages/scitbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/cross_entropy.py usr/lib/python3.14/dist-packages/scitbx/cubicle_neighbors.py usr/lib/python3.14/dist-packages/scitbx/differential_evolution.py usr/lib/python3.14/dist-packages/scitbx/direct_search_simulated_annealing.py usr/lib/python3.14/dist-packages/scitbx/fftpack.py usr/lib/python3.14/dist-packages/scitbx/genetic_algorithm_with_mp.py usr/lib/python3.14/dist-packages/scitbx/golden_section_search.py usr/lib/python3.14/dist-packages/scitbx/lbfgsb.py usr/lib/python3.14/dist-packages/scitbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/scitbx/minimizers.py usr/lib/python3.14/dist-packages/scitbx/minpack.py usr/lib/python3.14/dist-packages/scitbx/r3_utils.py usr/lib/python3.14/dist-packages/scitbx/regular_grid_on_unit_sphere.py usr/lib/python3.14/dist-packages/scitbx/restraints.py usr/lib/python3.14/dist-packages/scitbx/run_tests.py usr/lib/python3.14/dist-packages/scitbx/simplex.py usr/lib/python3.14/dist-packages/scitbx/smoothing.py usr/lib/python3.14/dist-packages/scitbx/array_family/ usr/lib/python3.14/dist-packages/scitbx/array_family/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/flex.py usr/lib/python3.14/dist-packages/scitbx/array_family/shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/accessors/ usr/lib/python3.14/dist-packages/scitbx/array_family/accessors/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/ usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/regression_test.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_flex.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py usr/lib/python3.14/dist-packages/scitbx/array_family/detail/ usr/lib/python3.14/dist-packages/scitbx/array_family/detail/__init__.py usr/lib/python3.14/dist-packages/scitbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/command_line/ usr/lib/python3.14/dist-packages/scitbx/command_line/__init__.py usr/lib/python3.14/dist-packages/scitbx/command_line/apply_tapenade_hints.py usr/lib/python3.14/dist-packages/scitbx/command_line/generate_error_h.py usr/lib/python3.14/dist-packages/scitbx/command_line/histogram.py usr/lib/python3.14/dist-packages/scitbx/command_line/show_exp_times.py usr/lib/python3.14/dist-packages/scitbx/command_line/show_sizes.py usr/lib/python3.14/dist-packages/scitbx/command_line/unicode_examples.py usr/lib/python3.14/dist-packages/scitbx/dtmin/ usr/lib/python3.14/dist-packages/scitbx/dtmin/__init__.py usr/lib/python3.14/dist-packages/scitbx/dtmin/auxiliary.py usr/lib/python3.14/dist-packages/scitbx/dtmin/bounds.py usr/lib/python3.14/dist-packages/scitbx/dtmin/compulsory.py usr/lib/python3.14/dist-packages/scitbx/dtmin/min_logging.py usr/lib/python3.14/dist-packages/scitbx/dtmin/minimizer.py usr/lib/python3.14/dist-packages/scitbx/dtmin/optional.py usr/lib/python3.14/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py usr/lib/python3.14/dist-packages/scitbx/dtmin/refinebase.py usr/lib/python3.14/dist-packages/scitbx/dtmin/reparams.py usr/lib/python3.14/dist-packages/scitbx/dtmin/twisted_gaussian.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/ usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/__init__.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py usr/lib/python3.14/dist-packages/scitbx/error/ usr/lib/python3.14/dist-packages/scitbx/error/__init__.py usr/lib/python3.14/dist-packages/scitbx/error/tst_error.py usr/lib/python3.14/dist-packages/scitbx/examples/ usr/lib/python3.14/dist-packages/scitbx/examples/__init__.py usr/lib/python3.14/dist-packages/scitbx/examples/bootstrap.py usr/lib/python3.14/dist-packages/scitbx/examples/chebyshev_lsq_example.py usr/lib/python3.14/dist-packages/scitbx/examples/flex_array_loops.py usr/lib/python3.14/dist-packages/scitbx/examples/flex_grid.py usr/lib/python3.14/dist-packages/scitbx/examples/functions.py usr/lib/python3.14/dist-packages/scitbx/examples/immoptibox_ports.py usr/lib/python3.14/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py usr/lib/python3.14/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py usr/lib/python3.14/dist-packages/scitbx/examples/lbfgs_recipe.py usr/lib/python3.14/dist-packages/scitbx/examples/minimizer_comparisons.py usr/lib/python3.14/dist-packages/scitbx/examples/principal_axes_of_inertia.py usr/lib/python3.14/dist-packages/scitbx/examples/rigid_body_refinement_core.py usr/lib/python3.14/dist-packages/scitbx/examples/bevington/ usr/lib/python3.14/dist-packages/scitbx/examples/bevington/__init__.py usr/lib/python3.14/dist-packages/scitbx/examples/bevington/silver.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/tst.py usr/lib/python3.14/dist-packages/scitbx/graph/ usr/lib/python3.14/dist-packages/scitbx/graph/__init__.py usr/lib/python3.14/dist-packages/scitbx/graph/rigidity.py usr/lib/python3.14/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py usr/lib/python3.14/dist-packages/scitbx/graph/tardy_tree.py usr/lib/python3.14/dist-packages/scitbx/graph/test_cases_tardy_pdb.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_rigidity.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_tardy_tree.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_utils.py usr/lib/python3.14/dist-packages/scitbx/graph/utils.py usr/lib/python3.14/dist-packages/scitbx/graphics_utils/ usr/lib/python3.14/dist-packages/scitbx/graphics_utils/__init__.py usr/lib/python3.14/dist-packages/scitbx/graphics_utils/tst.py usr/lib/python3.14/dist-packages/scitbx/iso_surface/ usr/lib/python3.14/dist-packages/scitbx/iso_surface/__init__.py usr/lib/python3.14/dist-packages/scitbx/iso_surface/tst_iso_surface.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/ usr/lib/python3.14/dist-packages/scitbx/lbfgs/__init__.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_curvatures.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_ext.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/ usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/__init__.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/run.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/twisted_gaussian.py usr/lib/python3.14/dist-packages/scitbx/linalg/ usr/lib/python3.14/dist-packages/scitbx/linalg/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/eigensystem.py usr/lib/python3.14/dist-packages/scitbx/linalg/ext.py usr/lib/python3.14/dist-packages/scitbx/linalg/householder.py usr/lib/python3.14/dist-packages/scitbx/linalg/svd.py usr/lib/python3.14/dist-packages/scitbx/linalg/boost_python/ usr/lib/python3.14/dist-packages/scitbx/linalg/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/ usr/lib/python3.14/dist-packages/scitbx/linalg/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_cholesky.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_eigensystem.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_matrix.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_svd.py usr/lib/python3.14/dist-packages/scitbx/line_search/ usr/lib/python3.14/dist-packages/scitbx/line_search/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/ usr/lib/python3.14/dist-packages/scitbx/lstbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/normal_eqns.py usr/lib/python3.14/dist-packages/scitbx/lstbx/normal_eqns_solving.py usr/lib/python3.14/dist-packages/scitbx/lstbx/benchmarks/ usr/lib/python3.14/dist-packages/scitbx/lstbx/benchmarks/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/lstbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/ usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/test_problems.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py usr/lib/python3.14/dist-packages/scitbx/math/ usr/lib/python3.14/dist-packages/scitbx/math/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/besselk.py usr/lib/python3.14/dist-packages/scitbx/math/breakpoint.py usr/lib/python3.14/dist-packages/scitbx/math/chebyshev_lsq_fit.py usr/lib/python3.14/dist-packages/scitbx/math/clustering.py usr/lib/python3.14/dist-packages/scitbx/math/cubic_spline.py usr/lib/python3.14/dist-packages/scitbx/math/curve_fitting.py usr/lib/python3.14/dist-packages/scitbx/math/des_3_100_13.py usr/lib/python3.14/dist-packages/scitbx/math/des_3_240_21.py usr/lib/python3.14/dist-packages/scitbx/math/distributions.py usr/lib/python3.14/dist-packages/scitbx/math/euler_angles.py usr/lib/python3.14/dist-packages/scitbx/math/ext.py usr/lib/python3.14/dist-packages/scitbx/math/farey.py usr/lib/python3.14/dist-packages/scitbx/math/fit_peak.py usr/lib/python3.14/dist-packages/scitbx/math/fit_quadratic_function.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_400.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_900.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_900_ylm.py usr/lib/python3.14/dist-packages/scitbx/math/gaussian.py usr/lib/python3.14/dist-packages/scitbx/math/gaussian_fit.py usr/lib/python3.14/dist-packages/scitbx/math/gumbel.py usr/lib/python3.14/dist-packages/scitbx/math/incremental_SO3_sampling.py usr/lib/python3.14/dist-packages/scitbx/math/lefebvre.py usr/lib/python3.14/dist-packages/scitbx/math/minimum_covering_ellipsoid.py usr/lib/python3.14/dist-packages/scitbx/math/multiple_superposition.py usr/lib/python3.14/dist-packages/scitbx/math/periodogram.py usr/lib/python3.14/dist-packages/scitbx/math/scale_curves.py usr/lib/python3.14/dist-packages/scitbx/math/sieve_of_eratosthenes.py usr/lib/python3.14/dist-packages/scitbx/math/so3_lie_algebra.py usr/lib/python3.14/dist-packages/scitbx/math/spe.py usr/lib/python3.14/dist-packages/scitbx/math/sphere_sphere_intersection.py usr/lib/python3.14/dist-packages/scitbx/math/superpose.py usr/lib/python3.14/dist-packages/scitbx/math/tst_2d_zernike.py usr/lib/python3.14/dist-packages/scitbx/math/tst_bessel_zeros.py usr/lib/python3.14/dist-packages/scitbx/math/tst_multivariate_moments.py usr/lib/python3.14/dist-packages/scitbx/math/tst_so3_lie_algebra.py usr/lib/python3.14/dist-packages/scitbx/math/tst_undirected_graph.py usr/lib/python3.14/dist-packages/scitbx/math/tst_zernike.py usr/lib/python3.14/dist-packages/scitbx/math/tst_zernike_mom.py usr/lib/python3.14/dist-packages/scitbx/math/undirected_graph.py usr/lib/python3.14/dist-packages/scitbx/math/zernike_align_fft.py usr/lib/python3.14/dist-packages/scitbx/math/boost_python/ usr/lib/python3.14/dist-packages/scitbx/math/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/dev/ usr/lib/python3.14/dist-packages/scitbx/math/dev/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/erf/ usr/lib/python3.14/dist-packages/scitbx/math/erf/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/tests/ usr/lib/python3.14/dist-packages/scitbx/math/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_angle_derivative.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_bessel.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_clustering.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_cubic_equation.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_curve_fitting.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_dmatrix.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_euler_angles.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_exp_functions.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_fit_peak.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_g_function.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gaussian.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gcd.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_halton.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_line_search.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_math.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_periodogram.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_quadrature.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_r3_rotation.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_resample.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_similarity_indices.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_superpose.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_tetrahedron.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_weighted_correlation.py usr/lib/python3.14/dist-packages/scitbx/matrix/ usr/lib/python3.14/dist-packages/scitbx/matrix/__init__.py usr/lib/python3.14/dist-packages/scitbx/matrix/row_echelon.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/ usr/lib/python3.14/dist-packages/scitbx/matrix/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/tst_householder.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/tst_row_echelon.py usr/lib/python3.14/dist-packages/scitbx/misc/ usr/lib/python3.14/dist-packages/scitbx/misc/__init__.py usr/lib/python3.14/dist-packages/scitbx/python_utils/ usr/lib/python3.14/dist-packages/scitbx/python_utils/__init__.py usr/lib/python3.14/dist-packages/scitbx/python_utils/command_line.py usr/lib/python3.14/dist-packages/scitbx/python_utils/dicts.py usr/lib/python3.14/dist-packages/scitbx/python_utils/graph_tools.py usr/lib/python3.14/dist-packages/scitbx/python_utils/misc.py usr/lib/python3.14/dist-packages/scitbx/python_utils/random_transform.py usr/lib/python3.14/dist-packages/scitbx/python_utils/robust_statistics.py usr/lib/python3.14/dist-packages/scitbx/python_utils/signal_utils.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_graph.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_random_transform.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_robust.py usr/lib/python3.14/dist-packages/scitbx/random/ usr/lib/python3.14/dist-packages/scitbx/random/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/boost_python/ usr/lib/python3.14/dist-packages/scitbx/random/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/tests/ usr/lib/python3.14/dist-packages/scitbx/random/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/tests/tst_random.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/tst.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/body_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/make_bundles.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/spatial_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_basic.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/wx_tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/test_simulation.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/test_utils.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_molecules.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_singular.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/utils.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_molecules.py usr/lib/python3.14/dist-packages/scitbx/serialization/ usr/lib/python3.14/dist-packages/scitbx/serialization/__init__.py usr/lib/python3.14/dist-packages/scitbx/slatec/ usr/lib/python3.14/dist-packages/scitbx/slatec/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/ usr/lib/python3.14/dist-packages/scitbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/scitbx/source_generators/lbfgs_fem.py usr/lib/python3.14/dist-packages/scitbx/source_generators/utils.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/ usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_algebras.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_all.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_apply.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_reductions.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py usr/lib/python3.14/dist-packages/scitbx/sparse/ usr/lib/python3.14/dist-packages/scitbx/sparse/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/boost_python/ usr/lib/python3.14/dist-packages/scitbx/sparse/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/ usr/lib/python3.14/dist-packages/scitbx/sparse/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/tst_sparse.py usr/lib/python3.14/dist-packages/scitbx/stdlib/ usr/lib/python3.14/dist-packages/scitbx/stdlib/__init__.py usr/lib/python3.14/dist-packages/scitbx/stl/ usr/lib/python3.14/dist-packages/scitbx/stl/__init__.py usr/lib/python3.14/dist-packages/scitbx/stl/map.py usr/lib/python3.14/dist-packages/scitbx/stl/set.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_map.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_set.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_vector.py usr/lib/python3.14/dist-packages/scitbx/stl/vector.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/single.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/boost_python/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/tst_single.py usr/lib/python3.14/dist-packages/scitbx/tests/ usr/lib/python3.14/dist-packages/scitbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/tests/differential_evolution.py usr/lib/python3.14/dist-packages/scitbx/tests/direct_search_simulated_annealing.py usr/lib/python3.14/dist-packages/scitbx/tests/golden_section_search.py usr/lib/python3.14/dist-packages/scitbx/tests/simplex.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_basic.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_cubicle_neighbors.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_minimizer_lbfgs_general.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_r3_utils.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_smoothing.py usr/lib/python3.14/dist-packages/scitbx/wigner/ usr/lib/python3.14/dist-packages/scitbx/wigner/__init__.py usr/lib/python3.14/dist-packages/scitbx/wigner/tst_wigner3j.py usr/lib/python3.14/dist-packages/serialtbx/ usr/lib/python3.14/dist-packages/serialtbx/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/ usr/lib/python3.14/dist-packages/serialtbx/detector/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/cspad.py usr/lib/python3.14/dist-packages/serialtbx/detector/jungfrau.py usr/lib/python3.14/dist-packages/serialtbx/detector/rayonix.py usr/lib/python3.14/dist-packages/serialtbx/detector/xtc.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/ usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/metrology.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/ usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/__init__.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/max_like.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/util.py usr/lib/python3.14/dist-packages/serialtbx/util/ usr/lib/python3.14/dist-packages/serialtbx/util/__init__.py usr/lib/python3.14/dist-packages/serialtbx/util/construct_frame.py usr/lib/python3.14/dist-packages/serialtbx/util/energy_scan_notch_finder.py usr/lib/python3.14/dist-packages/serialtbx/util/time.py usr/lib/python3.14/dist-packages/simtbx/ usr/lib/python3.14/dist-packages/simtbx/__init__.py usr/lib/python3.14/dist-packages/simtbx/run_tests.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/attr_list.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/device.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_io.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/mpi_logger.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/parameter_errors.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/phil.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/prep_stage2_input.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/psf.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/stage_two_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/base_refiner.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/geometry.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/parameters.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py usr/lib/python3.14/dist-packages/simtbx/gpu/ usr/lib/python3.14/dist-packages/simtbx/gpu/__init__.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_exafel_api.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_shoeboxes.py usr/lib/python3.14/dist-packages/simtbx/kokkos/ usr/lib/python3.14/dist-packages/simtbx/kokkos/__init__.py usr/lib/python3.14/dist-packages/simtbx/kokkos/tst_kokkos_lib.py usr/lib/python3.14/dist-packages/simtbx/modeling/ usr/lib/python3.14/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py usr/lib/python3.14/dist-packages/simtbx/modeling/__init__.py usr/lib/python3.14/dist-packages/simtbx/modeling/forward_models.py usr/lib/python3.14/dist-packages/simtbx/modeling/predictions.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/ usr/lib/python3.14/dist-packages/simtbx/nanoBragg/__init__.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_input.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/sim_data.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_multisource_background.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/utils.py usr/lib/python3.14/dist-packages/simtbx/pixel/ usr/lib/python3.14/dist-packages/simtbx/pixel/__init__.py usr/lib/python3.14/dist-packages/smtbx/ usr/lib/python3.14/dist-packages/smtbx/__init__.py usr/lib/python3.14/dist-packages/smtbx/development.py usr/lib/python3.14/dist-packages/smtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/smtbx/run_tests.py usr/lib/python3.14/dist-packages/smtbx/utils.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/ usr/lib/python3.14/dist-packages/smtbx/ab_initio/__init__.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/charge_flipping.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/ usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/__init__.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py usr/lib/python3.14/dist-packages/smtbx/absolute_structure/ usr/lib/python3.14/dist-packages/smtbx/absolute_structure/__init__.py usr/lib/python3.14/dist-packages/smtbx/array_family/ usr/lib/python3.14/dist-packages/smtbx/array_family/__init__.py usr/lib/python3.14/dist-packages/smtbx/command_line/ usr/lib/python3.14/dist-packages/smtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/smtbx/command_line/absolute_structure.py usr/lib/python3.14/dist-packages/smtbx/command_line/anom_refine.py usr/lib/python3.14/dist-packages/smtbx/command_line/benchmark_refinement.py usr/lib/python3.14/dist-packages/smtbx/command_line/masks.py usr/lib/python3.14/dist-packages/smtbx/command_line/refine.py usr/lib/python3.14/dist-packages/smtbx/masks/ usr/lib/python3.14/dist-packages/smtbx/masks/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/ usr/lib/python3.14/dist-packages/smtbx/refinement/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/least_squares.py usr/lib/python3.14/dist-packages/smtbx/refinement/weighting_schemes.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/adp.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/all.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/fpfdp.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/occupancy.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/rigid.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/site.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/all.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/ usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/adp_restraints.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py usr/lib/python3.14/dist-packages/smtbx/regression/ usr/lib/python3.14/dist-packages/smtbx/regression/__init__.py usr/lib/python3.14/dist-packages/smtbx/regression/tst_commandline_anomrefine.py usr/lib/python3.14/dist-packages/smtbx/regression/tst_commandline_refine.py usr/lib/python3.14/dist-packages/smtbx/regression/test_data/ usr/lib/python3.14/dist-packages/smtbx/regression/test_data/__init__.py usr/lib/python3.14/dist-packages/smtbx/source_generators/ usr/lib/python3.14/dist-packages/smtbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/smtbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/smtbx/stl/ usr/lib/python3.14/dist-packages/smtbx/stl/__init__.py usr/lib/python3.14/dist-packages/smtbx/stl/map.py usr/lib/python3.14/dist-packages/smtbx/structure_factors/ usr/lib/python3.14/dist-packages/smtbx/structure_factors/__init__.py usr/lib/python3.14/dist-packages/smtbx/structure_factors/direct/ usr/lib/python3.14/dist-packages/smtbx/structure_factors/direct/__init__.py usr/lib/python3.14/dist-packages/spotfinder/ usr/lib/python3.14/dist-packages/spotfinder/__init__.py usr/lib/python3.14/dist-packages/spotfinder/exception.py usr/lib/python3.14/dist-packages/spotfinder/run_tests.py usr/lib/python3.14/dist-packages/spotfinder/applications/ usr/lib/python3.14/dist-packages/spotfinder/applications/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/image_viewer.py usr/lib/python3.14/dist-packages/spotfinder/applications/practical_heuristics.py usr/lib/python3.14/dist-packages/spotfinder/applications/signal_strength.py usr/lib/python3.14/dist-packages/spotfinder/applications/stats_distl.py usr/lib/python3.14/dist-packages/spotfinder/applications/wrappers.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/ usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/cxi_phil.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/cxi_run3.py usr/lib/python3.14/dist-packages/spotfinder/array_family/ usr/lib/python3.14/dist-packages/spotfinder/array_family/__init__.py usr/lib/python3.14/dist-packages/spotfinder/array_family/flex.py usr/lib/python3.14/dist-packages/spotfinder/command_line/ usr/lib/python3.14/dist-packages/spotfinder/command_line/__init__.py usr/lib/python3.14/dist-packages/spotfinder/command_line/find_active_area.py usr/lib/python3.14/dist-packages/spotfinder/command_line/image_viewer.py usr/lib/python3.14/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/command_line/signal_strength.py usr/lib/python3.14/dist-packages/spotfinder/command_line/sweep_strength.py usr/lib/python3.14/dist-packages/spotfinder/command_line/thin_client.py usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/ usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/__init__.py usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/close_spots_detail.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/ usr/lib/python3.14/dist-packages/spotfinder/diffraction/__init__.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/geometry.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/imagefiles.py usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/ usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/__init__.py usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py usr/lib/python3.14/dist-packages/spotfinder/math_support/ usr/lib/python3.14/dist-packages/spotfinder/math_support/__init__.py usr/lib/python3.14/dist-packages/spotfinder/math_support/sphere_formulae.py usr/lib/python3.14/dist-packages/spotfinder/servers/ usr/lib/python3.14/dist-packages/spotfinder/servers/__init__.py usr/lib/python3.14/dist-packages/spotfinder/servers/adsc_client.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_bcsb.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_dials.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_utils.py usr/lib/python3.14/dist-packages/spotfinder/servers/bcsb_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/general_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py usr/lib/python3.14/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/servers/multipart_encoder.py usr/lib/python3.14/dist-packages/spotfinder/servers/pilatus_client.py usr/lib/python3.14/dist-packages/spotfinder/servers/specific_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/spotfinder_server_client_push.py usr/lib/python3.14/dist-packages/spotfinder/servers/spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/servers/thin_client.py usr/lib/python3.14/dist-packages/wxtbx/ usr/lib/python3.14/dist-packages/wxtbx/__init__.py usr/lib/python3.14/dist-packages/wxtbx/adp_statistics.py usr/lib/python3.14/dist-packages/wxtbx/anomalous_scattering.py usr/lib/python3.14/dist-packages/wxtbx/app.py usr/lib/python3.14/dist-packages/wxtbx/b_plot.py usr/lib/python3.14/dist-packages/wxtbx/bitmaps.py usr/lib/python3.14/dist-packages/wxtbx/browser.py usr/lib/python3.14/dist-packages/wxtbx/checklistctrl.py usr/lib/python3.14/dist-packages/wxtbx/custom_restraints.py usr/lib/python3.14/dist-packages/wxtbx/ensemble_validation.py usr/lib/python3.14/dist-packages/wxtbx/errors.py usr/lib/python3.14/dist-packages/wxtbx/heavy_atoms.py usr/lib/python3.14/dist-packages/wxtbx/icons.py usr/lib/python3.14/dist-packages/wxtbx/info_panels.py usr/lib/python3.14/dist-packages/wxtbx/layout.py usr/lib/python3.14/dist-packages/wxtbx/listeditor.py usr/lib/python3.14/dist-packages/wxtbx/metallicbutton.py usr/lib/python3.14/dist-packages/wxtbx/misc_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/monitor.py usr/lib/python3.14/dist-packages/wxtbx/mtz_dump.py usr/lib/python3.14/dist-packages/wxtbx/path_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/pdb_editor.py usr/lib/python3.14/dist-packages/wxtbx/polygon.py usr/lib/python3.14/dist-packages/wxtbx/polygon_db_viewer.py usr/lib/python3.14/dist-packages/wxtbx/process_control.py usr/lib/python3.14/dist-packages/wxtbx/qstat_view.py usr/lib/python3.14/dist-packages/wxtbx/segmentedctrl.py usr/lib/python3.14/dist-packages/wxtbx/sequence_view.py usr/lib/python3.14/dist-packages/wxtbx/symmetry_dialog.py usr/lib/python3.14/dist-packages/wxtbx/tables.py usr/lib/python3.14/dist-packages/wxtbx/utils.py usr/lib/python3.14/dist-packages/wxtbx/windows.py usr/lib/python3.14/dist-packages/wxtbx/wx4_compatibility.py usr/lib/python3.14/dist-packages/wxtbx/xtriage.py usr/lib/python3.14/dist-packages/wxtbx/command_line/ usr/lib/python3.14/dist-packages/wxtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py usr/lib/python3.14/dist-packages/wxtbx/command_line/b_plot.py usr/lib/python3.14/dist-packages/wxtbx/command_line/inspect_r_free_flags.py usr/lib/python3.14/dist-packages/wxtbx/command_line/loggraph.py usr/lib/python3.14/dist-packages/wxtbx/command_line/pdb_editor.py usr/lib/python3.14/dist-packages/wxtbx/command_line/pdb_statistics.py usr/lib/python3.14/dist-packages/wxtbx/command_line/plan_sad_experiment.py usr/lib/python3.14/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py usr/lib/python3.14/dist-packages/wxtbx/command_line/show_file_info.py usr/lib/python3.14/dist-packages/wxtbx/command_line/wxpython.py usr/lib/python3.14/dist-packages/wxtbx/command_line/xtriage.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/ usr/lib/python3.14/dist-packages/wxtbx/phil_controls/__init__.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/array_label.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/boolctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/choice.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/choice_multi.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/floatctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/floats.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/intctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/ints.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/misc_ctrls.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/numbers.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/path.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/simple_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/space_group.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/strctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/strings.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/symop.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/text_base.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/tree.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/tribool.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/unit_cell.py usr/lib/python3.14/dist-packages/wxtbx/plots/ usr/lib/python3.14/dist-packages/wxtbx/plots/__init__.py usr/lib/python3.14/dist-packages/wxtbx/plots/emringer.py usr/lib/python3.14/dist-packages/wxtbx/plots/molprobity.py usr/lib/python3.14/dist-packages/wxtbx/reports/ usr/lib/python3.14/dist-packages/wxtbx/reports/__init__.py usr/lib/python3.14/dist-packages/wxtbx/reports/blast.py usr/lib/python3.14/dist-packages/wxtbx/reports/pdb_symmetry.py usr/lib/python3.14/dist-packages/xcif/ usr/lib/python3.14/dist-packages/xcif/__init__.py usr/lib/python3.14/dist-packages/xcif/run_tests.py usr/lib/python3.14/dist-packages/xcif/benchmarks/ usr/lib/python3.14/dist-packages/xcif/benchmarks/__init__.py usr/lib/python3.14/dist-packages/xcif/benchmarks/run_benchmarks.py usr/lib/python3.14/dist-packages/xcif/regression/ usr/lib/python3.14/dist-packages/xcif/regression/__init__.py usr/lib/python3.14/dist-packages/xcif/regression/tst_api_compat.py usr/lib/python3.14/dist-packages/xcif/regression/tst_bindings.py usr/lib/python3.14/dist-packages/xcif/regression/tst_example_parse.py usr/lib/python3.14/dist-packages/xcif/regression/tst_example_tokenize.py usr/lib/python3.14/dist-packages/xcif/regression/tst_gil_release.py usr/lib/python3.14/dist-packages/xcif/regression/tst_iotbx_cif_reader_engine.py usr/lib/python3.14/dist-packages/xcif/regression/tst_iotbx_cif_reader_parity.py usr/lib/python3.14/dist-packages/xcif/regression/tst_memory.py usr/lib/python3.14/dist-packages/xcif/regression/tst_non_strict_mode.py usr/lib/python3.14/dist-packages/xcif/regression/tst_parse_verify.py usr/lib/python3.14/dist-packages/xcif/regression/tst_pdb_coordinates.py usr/lib/python3.14/dist-packages/xcif/regression/tst_pdb_sf.py usr/lib/python3.14/dist-packages/xcif/regression/tst_quoted_string_delimiter.py usr/lib/python3.14/dist-packages/xcif/regression/tst_roundtrip.py usr/lib/python3.14/dist-packages/xcif/regression/tst_semicolon_field_strict.py usr/lib/python3.14/dist-packages/xcif/regression/tst_string_interning.py usr/lib/python3.14/dist-packages/xcif/regression/tst_utf8.py sent 2,316,238,941 bytes received 145,168 bytes 220,608,010.38 bytes/sec total size is 2,315,129,570 speedup is 1.00 dh_auto_build -- --name cctbx -s custom --build-args="debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp --pyver={version} --srcdir=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx'" pybuild --build -i python{version} -p "3.14 3.13" --name cctbx -s custom --build-args="debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp --pyver={version} --srcdir=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx'" --parallel=8 I: pybuild base:385: debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp --pyver=3.14 --srcdir=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 --builddir='/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build'_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx' debian/install-cctbx.sh: line 7: 0: command not found --destdir '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp' --pyver '3.14' --srcdir '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' --builddir '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_' --modules 'annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx' -- Installing CCTBX into a FHS system Modules: annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx From the source /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 and build /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_ To the FHS : destdir /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp pyver 3.14 bindir /usr/bin incdir /usr/include pkglibdir /usr/lib/cctbx/python3.14 libdir /usr/lib/loongarch64-linux-gnu pythondir /usr/lib/python3.14/dist-packages with PYTHONPATH /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build Copying libtbx_env from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.14_cctbx/build_ to /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14 {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.csh"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/csh.sh"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_module_dependencies"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_module_dependencies.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.configure"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/configure.sh"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.start_binary_bundle"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/start_binary_bundle.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.env_run"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/env_run.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_env"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_env.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.prime_factors_of"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/prime_factors_of.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_python_sys_executable"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_python_sys_executable.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_host_and_user"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_host_and_user.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_tests"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_tests.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.clear_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/clear_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.make_sphinx_html"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/make_sphinx_html.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.sge_available_slots"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/sge_available_slots.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.assert_not_show_diff"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/assert_not_show_diff.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_include_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_include_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.refresh"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/refresh.sh"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_build_options"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_options.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.create_installer"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/create_installer.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.add_docstrings_with_ai"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/add_docstrings_with_ai.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.printenv"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/printenv.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_but_no_repr"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_but_no_repr.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.line_count"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/line_count.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.bibtex"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/bibtex.sh"), 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relocatable="../../../libtbx/command_line/extract_code_from_txt.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.nequal"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/nequal.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.import_all_python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/import_all_python.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.valgrind"): 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relocatable="bin/libtbx.remove_tree"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/remove_tree.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.find_files"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/find_files.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.path_utility"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/path_utility.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.gdb"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/gdb.sh"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.show_numpy_version"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_numpy_version.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.find_unused_imports"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/find_unused_imports.py"), 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relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/cctbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/crys3d.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/iotbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/dxtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/gltbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/mmtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/spotfinder.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/rstbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/serialtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py")}, 'bin_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin"), 'boost_version': 109000, 'build_options': , 'build_path': absolute_path("/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="exe"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="include"), 'installed': False, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="lib"), 'missing_for_build': set(), 'missing_for_use': set(), 'missing_optional': {'king', 'docutils', 'probe', 'reduce', 'cbflib'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../annlib"), 'annlib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../annlib_adaptbx"), 'boost': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost"), 'boost_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cctbx"), 'chiltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../chiltbx"), 'cma_es': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cma_es"), 'crys3d': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../crys3d"), 'dxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../dxtbx"), 'fable': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../fable"), 'gltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../gltbx"), 'iotbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../iotbx"), 'libtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx"), 'mmtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../mmtbx"), 'omptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../omptbx"), 'rstbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../rstbx"), 'scitbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../scitbx"), 'serialtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../serialtbx"), 'smtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx"), 'spotfinder': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../spotfinder"), 'tbxx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../tbxx"), 'ucif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ucif"), 'wxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': False, 'path_utility': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), 'python_version_major_minor': (3, 14), 'pythonpath': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../.."), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost_adaptbx"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="lib"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/lib/python3.14/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/lib/python3/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/local/lib/python3.14/dist-packages")], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../..")], 'scons_dist_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr")} Saved /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.14/libtbx_env env {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/usr", relocatable="bin/libtbx.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.14"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.csh"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/csh.sh"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.show_numpy_version"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_numpy_version.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.find_unused_imports"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/find_unused_imports.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.check_libcpp"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/check_libcpp.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.parallel_simple"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/parallel_simple.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.chunk"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/cctbx_chunk.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.assert_stdin_contains_strings"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.assert_stdin_does_not_contain_strings"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.show_repository_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_repository_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.scons"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/scons.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.create_mac_app"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/create_mac_app.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.list_source_files_sorted_by_size"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.show_full_command_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_full_command_path.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.list_files"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/list_files.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.run_tests_parallel"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/run_tests_parallel.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.create_windows_exe"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/create_windows_exe.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.epydoc_run"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/epydoc_run.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.show_number_of_processors"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_number_of_processors.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.create_unzipsfx"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/create_unzipsfx.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.remote_processing"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/remote_processing.py"), relocatable_path(anchor="/usr", relocatable="bin/sphinx.build"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/sphinx_build.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.find_pdb_mmcif_problems"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/find_pdb_mmcif_problems.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.exec"): relocatable_path(anchor="/usr", 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relocatable="bin/scitbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/annlib.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/cbflib.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/ccp4io.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/crys3d.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/smtbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/gltbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/spotfinder.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/serialtbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/boost.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/omptbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/cma_es.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/fable.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/scitbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/annlib.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/cbflib.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/ccp4io.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/crys3d.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/smtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/gltbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/spotfinder.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/serialtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py")}, 'bin_path': relocatable_path(anchor="/usr", relocatable="bin"), 'boost_version': 109000, 'build_options': , 'build_path': absolute_path("/usr/lib/cctbx/python3.14"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/usr", relocatable="bin"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/usr", relocatable="include"), 'installed': True, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/usr", relocatable="lib"), 'missing_for_build': set(), 'missing_for_use': set(), 'missing_optional': {'king', 'docutils', 'probe', 'reduce', 'cbflib'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/annlib"), 'annlib_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/annlib_adaptbx"), 'boost': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost"), 'boost_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx"), 'chiltbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/chiltbx"), 'cma_es': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cma_es"), 'crys3d': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d"), 'dxtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx"), 'fable': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/fable"), 'gltbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/gltbx"), 'iotbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx"), 'libtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx"), 'mmtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx"), 'omptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/omptbx"), 'rstbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx"), 'scitbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/scitbx"), 'serialtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/serialtbx"), 'smtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/smtbx"), 'spotfinder': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder"), 'tbxx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/tbxx"), 'ucif': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ucif"), 'wxtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': True, 'path_utility': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/usr", relocatable="bin/python3.14"), 'python_version_major_minor': (3, 14), 'pythonpath': [], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages")], 'scons_dist_path': relocatable_path(anchor="/usr", relocatable=".")} building file list ... done ./ boost_adaptbx/ boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy iotbx/ iotbx/pdb/ iotbx/pdb/hybrid_36_fem scitbx/ scitbx/array_family/ scitbx/array_family/tst_accessors scitbx/array_family/tst_af_1 scitbx/array_family/tst_af_2 scitbx/array_family/tst_af_3 scitbx/array_family/tst_af_4 scitbx/array_family/tst_af_5 scitbx/array_family/tst_mat3 scitbx/array_family/tst_optional_copy scitbx/array_family/tst_rectangular_full_packed scitbx/array_family/tst_ref_matrix_facet scitbx/array_family/tst_sym_mat3 scitbx/array_family/tst_unsigned_float_arithmetic scitbx/array_family/tst_vec3 scitbx/error/ scitbx/error/tst_error scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky scitbx/matrix/tests/tst_givens scitbx/matrix/tests/tst_householder scitbx/matrix/tests/tst_svd scitbx/serialization/ scitbx/serialization/tst_base_256 smtbx/ smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens smtbx/refinement/constraints/tests/tst_reparametrisation smtbx/refinement/constraints/tests/tst_special_position sent 16,855,194 bytes received 568 bytes 33,711,524.00 bytes/sec total size is 16,843,352 speedup is 1.00 building file list ... done ./ libann_adaptor.so -> libann_adaptor.so.0.0.1 libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 libann_adaptor.so.0.0.1 libasymmetric_map.so -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0.0.1 libcbf-private.so -> libcbf-private.so.0.0.1 libcbf-private.so.0 -> libcbf-private.so.0.0.1 libcbf-private.so.0.0.1 libccp4io.so -> libccp4io.so.0.0.1 libccp4io.so.0 -> libccp4io.so.0.0.1 libccp4io.so.0.0.1 libcctbx.so -> libcctbx.so.0.0.1 libcctbx.so.0 -> libcctbx.so.0.0.1 libcctbx.so.0.0.1 libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0.0.1 libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0.0.1 libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0.0.1 libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0.0.1 libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0.0.1 libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0.0.1 libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0.0.1 libomptbx.so -> libomptbx.so.0.0.1 libomptbx.so.0 -> libomptbx.so.0.0.1 libomptbx.so.0.0.1 librstbx.so -> librstbx.so.0.0.1 librstbx.so.0 -> librstbx.so.0.0.1 librstbx.so.0.0.1 libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0.0.1 libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0.0.1 libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0.0.1 libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0.0.1 libspotfinder.so -> libspotfinder.so.0.0.1 libspotfinder.so.0 -> libspotfinder.so.0.0.1 libspotfinder.so.0.0.1 sent 58,337,887 bytes received 494 bytes 38,892,254.00 bytes/sec total size is 58,320,722 speedup is 1.00 building file list ... done annlib_adaptbx/ annlib_adaptbx/ann_adaptor.h sent 2,230 bytes received 38 bytes 4,536.00 bytes/sec total size is 2,068 speedup is 0.91 building file list ... done boost_adaptbx/ boost_adaptbx/boost_range_python.hpp boost_adaptbx/convertible.h boost_adaptbx/exporting.hpp boost_adaptbx/floating_point_exceptions.h boost_adaptbx/hash.h boost_adaptbx/iterator_range.h boost_adaptbx/optional_conversions.h boost_adaptbx/precompiled.h boost_adaptbx/python_streambuf.h boost_adaptbx/std_pair_conversion.h boost_adaptbx/std_pair_fwd.h boost_adaptbx/swig_arg.hpp boost_adaptbx/tuple_conversion.h boost_adaptbx/graph/ boost_adaptbx/graph/graph_export_adaptor.hpp boost_adaptbx/graph/graph_type.hpp boost_adaptbx/graph/maximum_clique_greedy.hpp boost_adaptbx/graph/maximum_clique_rascal.hpp boost_adaptbx/graph/vertex_map.hpp boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy.h sent 73,881 bytes received 386 bytes 148,534.00 bytes/sec total size is 72,301 speedup is 0.97 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/basic.h cbflib_adaptbx/detectors/buffer_based_service.h cbflib_adaptbx/detectors/cbf_adaptor.h cbflib_adaptbx/detectors/cbf_byte_offset_optimized.h cbflib_adaptbx/detectors/mar_adaptor.h cbflib_adaptbx/detectors/boost_python/ cbflib_adaptbx/detectors/boost_python/cbf_binary_adaptor.h cbflib_adaptbx/detectors/boost_python/general_cbf_write.h sent 22,310 bytes received 158 bytes 44,936.00 bytes/sec total size is 21,627 speedup is 0.96 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/ccp4_ccplib_fem.hpp ccp4io_adaptbx/ccp4_diskio_fem.hpp ccp4io_adaptbx/ccp4_fftlib_fem.hpp ccp4io_adaptbx/ccp4_library_fem.hpp ccp4io_adaptbx/ccp4_maplib_fem.hpp ccp4io_adaptbx/ccp4_mtzlib_fem.hpp ccp4io_adaptbx/ccp4_other_fem.hpp ccp4io_adaptbx/ccp4_parser_f.h ccp4io_adaptbx/ccp4_parser_fem.hpp ccp4io_adaptbx/ccp4_symlib_fem.hpp ccp4io_adaptbx/cmaplib_f.h ccp4io_adaptbx/cmtzlib_f.h ccp4io_adaptbx/csymlib_f.h ccp4io_adaptbx/library_f.h ccp4io_adaptbx/printf_wrappers.h ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/fftlib.hpp sent 87,955 bytes received 326 bytes 176,562.00 bytes/sec total size is 86,686 speedup is 0.98 building file list ... done cctbx/ cctbx/adptbx.h cctbx/anharmonic.h cctbx/coordinates.h cctbx/crystal_orientation.h cctbx/cumulative_intensity_distribution.h cctbx/error.h cctbx/french_wilson.h cctbx/hendrickson_lattman.h cctbx/import_scitbx_af.h cctbx/miller.h cctbx/restraints.h cctbx/tagged_value.h cctbx/uctbx.h cctbx/adp_restraints/ cctbx/adp_restraints/adp_restraints.h cctbx/adp_restraints/adp_similarity.h cctbx/adp_restraints/aniso_restraints.h cctbx/adp_restraints/fixed_u_eq_adp.h cctbx/adp_restraints/isotropic_adp.h cctbx/adp_restraints/rigid_bond.h cctbx/adp_restraints/rigu.h cctbx/adptbx/ cctbx/adptbx/hirshfeld.h cctbx/covariance/ cctbx/covariance/covariance.h cctbx/crystal/ cctbx/crystal/asu_clusters.h cctbx/crystal/close_packing.h cctbx/crystal/coordination_sequences.h cctbx/crystal/direct_space_asu.h cctbx/crystal/incremental_pairs.h cctbx/crystal/namespace.h cctbx/crystal/neighbors_fast.h cctbx/crystal/neighbors_simple.h cctbx/crystal/pair_tables.h cctbx/crystal/site_cluster_analysis.h cctbx/crystal/symmetry.h cctbx/crystal/workarounds_bpl.h cctbx/dmtbx/ cctbx/dmtbx/triplet_generator.h cctbx/dmtbx/triplet_phase_relation.h cctbx/eltbx/ cctbx/eltbx/attenuation_coefficient.h cctbx/eltbx/basic.h cctbx/eltbx/chemical_elements.h cctbx/eltbx/covalent_radii.h cctbx/eltbx/electron_scattering.h cctbx/eltbx/fp_fdp.h cctbx/eltbx/henke.h cctbx/eltbx/icsd_radii.h cctbx/eltbx/neutron.h cctbx/eltbx/sasaki.h cctbx/eltbx/tiny_pse.h cctbx/eltbx/wavelengths.h cctbx/eltbx/xray_scattering.h cctbx/eltbx/xray_scattering/ cctbx/eltbx/xray_scattering/form_factor.h cctbx/eltbx/xray_scattering/gaussian.h cctbx/eltbx/xray_scattering/n_gaussian.h cctbx/eltbx/xray_scattering/n_gaussian_raw.h cctbx/examples/ cctbx/examples/merging/ cctbx/examples/merging/postrefine_base.h cctbx/examples/merging/xscale_prototype_core.h cctbx/geometry/ cctbx/geometry/geometry.h cctbx/geometry_restraints/ cctbx/geometry_restraints/angle.h cctbx/geometry_restraints/asu_cache.h cctbx/geometry_restraints/bond.h cctbx/geometry_restraints/bond_misc.h cctbx/geometry_restraints/bond_similarity.h cctbx/geometry_restraints/bond_sorted.h cctbx/geometry_restraints/chirality.h cctbx/geometry_restraints/dihedral.h cctbx/geometry_restraints/motif.h cctbx/geometry_restraints/namespace.h cctbx/geometry_restraints/nonbonded.h cctbx/geometry_restraints/nonbonded_sorted.h cctbx/geometry_restraints/parallelity.h cctbx/geometry_restraints/planarity.h cctbx/geometry_restraints/proxy_select.h cctbx/geometry_restraints/shared_wrapper_pickle.hpp cctbx/geometry_restraints/sorted_asu_proxies.h cctbx/geometry_restraints/utils.h cctbx/maptbx/ cctbx/maptbx/asymmetric_map.h cctbx/maptbx/average_densities.h cctbx/maptbx/connectivity.h cctbx/maptbx/coordinate_transformers.h cctbx/maptbx/copy.h cctbx/maptbx/fft.h cctbx/maptbx/fsc.h cctbx/maptbx/ft_analytical_1d_point_scatterer_at_origin.h cctbx/maptbx/grid_indices_around_sites.h cctbx/maptbx/grid_tags.h cctbx/maptbx/gridding.h cctbx/maptbx/histogram.h cctbx/maptbx/interpolation.h cctbx/maptbx/loft.h cctbx/maptbx/map_accumulator.h cctbx/maptbx/marked_grid_points.h cctbx/maptbx/mask.h cctbx/maptbx/mask_utils.h cctbx/maptbx/namespace.h cctbx/maptbx/peak_search.h cctbx/maptbx/resolution.h cctbx/maptbx/skeletons.h cctbx/maptbx/sphericity.h cctbx/maptbx/standard_deviations_around_sites.hpp cctbx/maptbx/statistics.h cctbx/maptbx/structure_factors.h cctbx/maptbx/target_and_gradients.h cctbx/maptbx/utils.h cctbx/maptbx/accessors/ cctbx/maptbx/accessors/c_grid_p1.h cctbx/maptbx/accessors/c_grid_padded_p1.h cctbx/maptbx/bcr/ cctbx/maptbx/bcr/bcr.h cctbx/maptbx/bcr/vrm.h cctbx/masks/ cctbx/masks/around_atoms.h cctbx/masks/flood_fill.h cctbx/math/ cctbx/math/array_utils.h cctbx/math/cos_sin_table.h cctbx/math/loop_n_from_m.h cctbx/math/mod.h cctbx/miller/ cctbx/miller/amplitude_normalisation.h cctbx/miller/asu.h cctbx/miller/bins.h cctbx/miller/change_basis.h cctbx/miller/expand_to_p1.h cctbx/miller/f_calc_map.h cctbx/miller/index_generator.h cctbx/miller/index_span.h cctbx/miller/lookup_utils.h cctbx/miller/match.h cctbx/miller/match_bijvoet_mates.h cctbx/miller/match_indices.h cctbx/miller/match_multi_indices.h cctbx/miller/math.h cctbx/miller/merge_equivalents.h cctbx/miller/phase_integrator.h cctbx/miller/phase_transfer.h cctbx/miller/randomize_amplitude_and_phase.h cctbx/miller/slices.h cctbx/miller/sym_equiv.h cctbx/miller/union_of_indices.h cctbx/multipolar/ cctbx/multipolar/aspherical.h cctbx/sgtbx/ cctbx/sgtbx/basic.h cctbx/sgtbx/brick.h cctbx/sgtbx/change_of_basis_op.h cctbx/sgtbx/find_affine.h cctbx/sgtbx/group_codes.h cctbx/sgtbx/lattice_symmetry.h cctbx/sgtbx/lattice_tr.h cctbx/sgtbx/miller_ops.h cctbx/sgtbx/operator_from_axis_direction.h cctbx/sgtbx/parse_string.h cctbx/sgtbx/phase_info.h cctbx/sgtbx/reciprocal_space_asu.h cctbx/sgtbx/reciprocal_space_reference_asu.h cctbx/sgtbx/reference_settings.h cctbx/sgtbx/rot_mx.h cctbx/sgtbx/rot_mx_hash.h cctbx/sgtbx/rot_mx_info.h cctbx/sgtbx/rotation_matrices.h cctbx/sgtbx/row_echelon_solve.h cctbx/sgtbx/rt_mx.h cctbx/sgtbx/rt_mx_hash.h cctbx/sgtbx/search_symmetry.h cctbx/sgtbx/select_generators.h cctbx/sgtbx/seminvariant.h cctbx/sgtbx/site_constraints.h cctbx/sgtbx/site_symmetry.h cctbx/sgtbx/site_symmetry_table.h cctbx/sgtbx/smith_normal_form.h cctbx/sgtbx/space_group.h cctbx/sgtbx/space_group_hash.h cctbx/sgtbx/space_group_type.h cctbx/sgtbx/sym_equiv_sites.h cctbx/sgtbx/symbols.h cctbx/sgtbx/sys_abs_equiv.h cctbx/sgtbx/tensor_rank_2.h cctbx/sgtbx/tensors.h cctbx/sgtbx/tr_group.h cctbx/sgtbx/tr_group_hash.h cctbx/sgtbx/tr_vec.h cctbx/sgtbx/tr_vec_hash.h cctbx/sgtbx/utils.h cctbx/sgtbx/wyckoff.h cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/asymmetric_unit.h cctbx/sgtbx/direct_space_asu/proto/cut.h cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.h cctbx/sgtbx/direct_space_asu/proto/expressions.h cctbx/sgtbx/direct_space_asu/proto/facet_collection.h cctbx/sgtbx/direct_space_asu/proto/reference_table.h cctbx/sgtbx/direct_space_asu/proto/shortcuts.h cctbx/sgtbx/direct_space_asu/proto/small_vec_math.h cctbx/symmetry_search/ cctbx/symmetry_search/translation_refinement.h cctbx/translation_search/ cctbx/translation_search/fast_nv1995.h cctbx/translation_search/fast_terms.h cctbx/translation_search/namespace.h cctbx/translation_search/symmetry_flags.h cctbx/translation_search/fast_nv1995/ cctbx/translation_search/fast_nv1995/combinations.h cctbx/translation_search/fast_nv1995/intermediates.h cctbx/translation_search/fast_nv1995/summations.h cctbx/uctbx/ cctbx/uctbx/fast_minimum_reduction.h cctbx/uctbx/niggli_reduction.h cctbx/uctbx/determine_unit_cell/ cctbx/uctbx/determine_unit_cell/NCDist.h cctbx/xray/ cctbx/xray/conversions.h cctbx/xray/curvatures_simple.h cctbx/xray/each_hkl_gradients_direct.h cctbx/xray/extinction.h cctbx/xray/f_model.h cctbx/xray/fast_gradients.h cctbx/xray/gradient_flags.h cctbx/xray/gradients_direct.h cctbx/xray/grouped_data.h cctbx/xray/hr_ht_cache.h cctbx/xray/minimization.h cctbx/xray/observations.h cctbx/xray/packing_order.h cctbx/xray/parameter_map.h cctbx/xray/sampled_model_density.h cctbx/xray/sampling_base.h cctbx/xray/sampling_loop.h cctbx/xray/scatterer.h cctbx/xray/scatterer_flags.h cctbx/xray/scatterer_utils.h cctbx/xray/scattering_type_registry.h cctbx/xray/sigmaa.h cctbx/xray/structure_factors_direct.h cctbx/xray/structure_factors_simple.h cctbx/xray/targets.h cctbx/xray/twin_component.h cctbx/xray/twin_targets.h cctbx/xray/targets/ cctbx/xray/targets/common_results.h cctbx/xray/targets/correlation.h cctbx/xray/targets/least_squares.h cctbx/xray/targets/mlf.h cctbx/xray/targets/mlhl.h cctbx/xray/targets/mli.h cctbx/xray/targets/shelxl_wght_ls.hpp sent 1,947,246 bytes received 4,458 bytes 3,903,408.00 bytes/sec total size is 1,929,959 speedup is 0.99 building file list ... done cma_es/ cma_es/cma/ cma_es/cma/cmaes.h cma_es/cma/cmaes_interface.h sent 6,886 bytes received 60 bytes 13,892.00 bytes/sec total size is 6,671 speedup is 0.96 building file list ... done sent 190 bytes received 12 bytes 404.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done dxtbx/ dxtbx/error.h dxtbx/imageset.h dxtbx/array_family/ dxtbx/array_family/flex_table.h dxtbx/array_family/flex_table_suite.h dxtbx/array_family/ref_pickle_double_buffered.h dxtbx/boost_python/ dxtbx/boost_python/compression.h dxtbx/format/ dxtbx/format/image.h dxtbx/format/boost_python/ dxtbx/format/boost_python/cbf_read_buffer.h dxtbx/masking/ dxtbx/masking/goniometer_shadow_masking.h dxtbx/masking/masking.h dxtbx/model/ dxtbx/model/beam.h dxtbx/model/crystal.h dxtbx/model/detector.h dxtbx/model/experiment.h dxtbx/model/experiment_list.h dxtbx/model/goniometer.h dxtbx/model/history.h dxtbx/model/kappa_goniometer.h dxtbx/model/model_helpers.h dxtbx/model/multi_axis_goniometer.h dxtbx/model/panel.h dxtbx/model/panel_data.h dxtbx/model/parallax_correction.h dxtbx/model/pixel_to_millimeter.h dxtbx/model/ray_intersection.h dxtbx/model/scan.h dxtbx/model/scan_helpers.h dxtbx/model/spectrum.h dxtbx/model/virtual_panel.h dxtbx/model/boost_python/ dxtbx/model/boost_python/pickle_suite.h dxtbx/model/boost_python/to_from_dict.h sent 399,896 bytes received 629 bytes 801,050.00 bytes/sec total size is 397,404 speedup is 0.99 building file list ... done ./ fem.hpp noexcept_false.hpp fem/ fem/arr.hpp fem/arr_and_str_indices.hpp fem/arr_ref.hpp fem/arr_size.hpp fem/close_chain.hpp fem/common.hpp fem/data.hpp fem/data_of_type.hpp fem/data_type_star.hpp fem/dimension.hpp fem/do.hpp fem/error_utils.hpp fem/file_positioning_chain.hpp fem/format.hpp fem/inquire_chain.hpp fem/intrinsics.hpp fem/intrinsics_extra.hpp fem/io.hpp fem/io_exceptions.hpp fem/main.hpp fem/major_types.hpp fem/open_chain.hpp fem/read.hpp fem/size_t.hpp fem/star.hpp fem/stop.hpp fem/str.hpp fem/str_arr_ref.hpp fem/str_ref.hpp fem/variant.hpp fem/write.hpp fem/zero.hpp fem/utils/ fem/utils/char.hpp fem/utils/double_to_string.hpp fem/utils/equivalence.hpp fem/utils/int_types.hpp fem/utils/misc.hpp fem/utils/path.hpp fem/utils/random.hpp fem/utils/real_as_string.hpp fem/utils/simple_streams.hpp fem/utils/string.hpp fem/utils/string_to_double.hpp fem/utils/string_to_double_fmt.hpp fem/utils/token.hpp sent 204,794 bytes received 918 bytes 411,424.00 bytes/sec total size is 201,540 speedup is 0.98 building file list ... done gltbx/ gltbx/error.h gltbx/error_utils.h gltbx/fonts_ucs.h gltbx/glext.h gltbx/include_opengl.h gltbx/pointer_args_bpl.h gltbx/quadrics.h gltbx/special_wrapper_support.h gltbx/util.h sent 598,791 bytes received 190 bytes 1,197,962.00 bytes/sec total size is 597,954 speedup is 1.00 building file list ... done iotbx/ iotbx/error.h iotbx/detectors/ iotbx/detectors/bruker.h iotbx/detectors/display.h iotbx/detectors/image_divider.h iotbx/detectors/scanbox.h iotbx/detectors/context/ iotbx/detectors/context/spot_xy_convention.h iotbx/dsn6/ iotbx/dsn6/dsn6.hpp iotbx/mtz/ iotbx/mtz/batch.h iotbx/mtz/column.h iotbx/mtz/crystal.h iotbx/mtz/dataset.h iotbx/mtz/object.h iotbx/pdb/ iotbx/pdb/common_residue_names.h iotbx/pdb/hierarchy.h iotbx/pdb/hierarchy_atoms.h iotbx/pdb/hierarchy_bpl.h iotbx/pdb/hybrid_36_c.h iotbx/pdb/hybrid_36_cpp.h iotbx/pdb/input.h iotbx/pdb/modified_aa_names.h iotbx/pdb/modified_rna_dna_names.h iotbx/pdb/namespace.h iotbx/pdb/rna_dna_atom_names.h iotbx/pdb/small_str.h iotbx/pdb/utils.h iotbx/pdb/write_utils.h iotbx/pdb/write_utils_bpl.h iotbx/pdb/xray_structure.h iotbx/shelx/ iotbx/shelx/hklf.h iotbx/xplor/ iotbx/xplor/map_reader.h iotbx/xplor/map_writer.h sent 273,004 bytes received 629 bytes 547,266.00 bytes/sec total size is 270,145 speedup is 0.99 building file list ... done sent 1,279 bytes received 12 bytes 2,582.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done mmtbx/ mmtbx/error.h mmtbx/import_scitbx_af.h mmtbx/alignment/ mmtbx/alignment/align.h mmtbx/alignment/alignment.h mmtbx/alignment/tables.h mmtbx/building/ mmtbx/building/loop_closure/ mmtbx/building/loop_closure/ccd.h mmtbx/bulk_solvent/ mmtbx/bulk_solvent/bulk_solvent.h mmtbx/bulk_solvent/mosaic.h mmtbx/den/ mmtbx/den/den.h mmtbx/dynamics/ mmtbx/dynamics/dynamics.h mmtbx/f_model/ mmtbx/f_model/f_model.h mmtbx/geometry/ mmtbx/geometry/asa.hpp mmtbx/geometry/calculator.hpp mmtbx/geometry/clash.hpp mmtbx/geometry/containment.hpp mmtbx/geometry/flattening.hpp mmtbx/geometry/indexing.hpp mmtbx/geometry/overlap.hpp mmtbx/geometry/primitive.hpp mmtbx/geometry/sphere_surface_sampling.hpp mmtbx/geometry/boost_python/ mmtbx/geometry/boost_python/containment.hpp mmtbx/geometry/boost_python/indexing.hpp mmtbx/geometry_restraints/ mmtbx/geometry_restraints/ramachandran.h mmtbx/geometry_restraints/reference_coordinate.h mmtbx/hydrogens/ mmtbx/hydrogens/hydrogens.h mmtbx/masks/ mmtbx/masks/atom_mask.h mmtbx/masks/grid_symop.h mmtbx/masks/util.h mmtbx/max_lik/ mmtbx/max_lik/max_lik.h mmtbx/max_lik/solvent_distribution_nco_09may2005.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short_uniform.h mmtbx/max_lik/solvent_distribution_nco_14mar2005.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_mod.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_short.h mmtbx/max_lik/wat_dist_r_0_1.h mmtbx/max_lik/wat_dist_r_2p0_2p5.h mmtbx/ncs/ mmtbx/ncs/cartesian_restraints.h mmtbx/ncs/tncs.h mmtbx/pair_interaction/ mmtbx/pair_interaction/interaction.h mmtbx/probe/ mmtbx/probe/Common.h mmtbx/probe/DotSpheres.h mmtbx/probe/Scoring.h mmtbx/probe/SpatialQuery.h mmtbx/reduce/ mmtbx/reduce/InteractionGraph.h mmtbx/reduce/Optimizers.h mmtbx/reduce/PositionReturn.h mmtbx/rotamer/ mmtbx/rotamer/fit.h mmtbx/rsr/ mmtbx/rsr/rsr.h mmtbx/scaling/ mmtbx/scaling/absolute_scaling.h mmtbx/scaling/outlier.h mmtbx/scaling/relative_scaling.h mmtbx/scaling/scaling.h mmtbx/scaling/twinning.h mmtbx/secondary_structure/ mmtbx/secondary_structure/dssp.hpp mmtbx/secondary_structure/identify.hpp mmtbx/tls/ mmtbx/tls/decompose.h mmtbx/tls/optimise_amplitudes.h mmtbx/tls/tls.h mmtbx/tls/utils.h mmtbx/utils/ mmtbx/utils/utils.h mmtbx/validation/ mmtbx/validation/ramachandran/ mmtbx/validation/ramachandran/rama8000_tables.h mmtbx/validation/ramachandran/rama_eval.h sent 2,052,699 bytes received 1,291 bytes 4,107,980.00 bytes/sec total size is 2,046,334 speedup is 1.00 building file list ... done omptbx/ omptbx/lock.h omptbx/omp_or_stubs.h omptbx/stubs.h sent 2,109 bytes received 76 bytes 4,370.00 bytes/sec total size is 1,850 speedup is 0.85 building file list ... done rstbx/ rstbx/backplane.h rstbx/import_scitbx_af.hpp rstbx/apps/ rstbx/apps/stills/ rstbx/apps/stills/simple_integration.h rstbx/bandpass/ rstbx/bandpass/parameters.h rstbx/bandpass/subpixel_joint_model.h rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/sensor.h rstbx/diffraction/ rstbx/diffraction/ewald_sphere.h rstbx/diffraction/partial_spot_position_partial_H.h rstbx/diffraction/reflection_range.h rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/fastbragg.h rstbx/dps_core/ rstbx/dps_core/direction.h rstbx/dps_core/directional_fft.h rstbx/dps_core/dps_core.h rstbx/dps_core/spotclass.h rstbx/indexing_api/ rstbx/indexing_api/indexing_api.h rstbx/simage/ rstbx/simage/image_simple.hpp rstbx/simulation/ rstbx/simulation/sim_xfel1.h rstbx/symmetry/ rstbx/symmetry/constraints/ rstbx/symmetry/constraints/a_g_conversion.h sent 111,354 bytes received 400 bytes 223,508.00 bytes/sec total size is 109,476 speedup is 0.98 building file list ... done scitbx/ scitbx/auto_array.h scitbx/constants.h scitbx/cubicle_neighbors.hpp scitbx/cubicles.h scitbx/error.h scitbx/error_utils.h scitbx/histogram.h scitbx/indexed_value.h scitbx/iso_surface.h scitbx/lbfgs.h scitbx/lbfgsb.h scitbx/mat2.h scitbx/mat3.h scitbx/numerical.h scitbx/r3_utils.hpp scitbx/random.h scitbx/random_legacy_boost_1_63.h scitbx/rational.h scitbx/rotr3.h scitbx/sym_mat2.h scitbx/sym_mat3.h scitbx/type_holder.h scitbx/vec2.h scitbx/vec3.h scitbx/weighted_histogram.h scitbx/array_family/ scitbx/array_family/array_adaptor.h scitbx/array_family/block_iterator.h scitbx/array_family/counts.h scitbx/array_family/error.h scitbx/array_family/flex_types.h scitbx/array_family/initialiser.h scitbx/array_family/linear_interpolation.h scitbx/array_family/loops.h scitbx/array_family/memory.h scitbx/array_family/misc_functions.h scitbx/array_family/owning_ref.h scitbx/array_family/range.h scitbx/array_family/ref.h scitbx/array_family/ref_matrix.h scitbx/array_family/ref_reductions.h scitbx/array_family/selections.h scitbx/array_family/shared.h scitbx/array_family/shared_plain.h scitbx/array_family/simple_io.h scitbx/array_family/simple_tiny_io.h scitbx/array_family/slice.h scitbx/array_family/small.h scitbx/array_family/small_plain.h scitbx/array_family/sort.h scitbx/array_family/tiny.h scitbx/array_family/tiny_mat_ref.h scitbx/array_family/tiny_plain.h scitbx/array_family/tiny_types.h scitbx/array_family/type_traits.h scitbx/array_family/versa.h scitbx/array_family/versa_matrix.h scitbx/array_family/versa_plain.h scitbx/array_family/accessors/ scitbx/array_family/accessors/c_grid.h scitbx/array_family/accessors/c_grid_padded.h scitbx/array_family/accessors/c_grid_padded_periodic.h scitbx/array_family/accessors/c_grid_periodic.h scitbx/array_family/accessors/c_index_1d_calculator.h scitbx/array_family/accessors/c_interval_grid.h scitbx/array_family/accessors/f_grid.h scitbx/array_family/accessors/flex_grid.h scitbx/array_family/accessors/mat_grid.h scitbx/array_family/accessors/packed_matrix.h scitbx/array_family/accessors/rectangular_full_packed.h scitbx/array_family/accessors/row_and_column.h scitbx/array_family/accessors/striding.h scitbx/array_family/accessors/traits.h scitbx/array_family/accessors/trivial.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/byte_str.h scitbx/array_family/boost_python/c_grid_flex_conversions.h scitbx/array_family/boost_python/flex_helpers.h scitbx/array_family/boost_python/flex_pickle_double_buffered.h scitbx/array_family/boost_python/flex_pickle_single_buffered.h scitbx/array_family/boost_python/flex_wrapper.h scitbx/array_family/boost_python/flex_wrapper_complex.h scitbx/array_family/boost_python/numpy_bridge.hpp scitbx/array_family/boost_python/owning_ref_conversions.h scitbx/array_family/boost_python/packed_to_flex_conversions.h scitbx/array_family/boost_python/passing_flex_by_reference.h scitbx/array_family/boost_python/range_wrappers.h scitbx/array_family/boost_python/ref_flex_conversions.h scitbx/array_family/boost_python/ref_from_array.h scitbx/array_family/boost_python/ref_pickle_double_buffered.h scitbx/array_family/boost_python/selections_wrapper.h scitbx/array_family/boost_python/shared_flat_conversions.h scitbx/array_family/boost_python/shared_flex_conversions.h scitbx/array_family/boost_python/shared_wrapper.h scitbx/array_family/boost_python/utils.h scitbx/array_family/detail/ scitbx/array_family/detail/auto_allocator.h scitbx/array_family/detail/generic_array_functors.h scitbx/array_family/detail/generic_array_operators.h scitbx/array_family/detail/misc.h scitbx/array_family/detail/push_back_etc.h scitbx/array_family/detail/reducing_boolean_mem_fun.h scitbx/array_family/detail/ref_helpers.h scitbx/array_family/detail/tiny_helpers.h scitbx/boost_python/ scitbx/boost_python/array_as_list.h scitbx/boost_python/container_conversions.h scitbx/boost_python/cstringio_utils.h scitbx/boost_python/is_polymorphic_workaround.h scitbx/boost_python/iterator_range.hpp scitbx/boost_python/iterator_wrappers.h scitbx/boost_python/pair_as_tuple.hpp scitbx/boost_python/sequence_as_array.h scitbx/boost_python/slice.h scitbx/boost_python/stl_map_as_dict.h scitbx/boost_python/utils.h scitbx/examples/ scitbx/examples/bevington/ scitbx/examples/bevington/prototype_core.h scitbx/fftpack/ scitbx/fftpack/complex_to_complex.h scitbx/fftpack/complex_to_complex_2d.h scitbx/fftpack/complex_to_complex_3d.h scitbx/fftpack/factorization.h scitbx/fftpack/gridding.h scitbx/fftpack/real_to_complex.h scitbx/fftpack/real_to_complex_3d.h scitbx/fftpack/detail/ scitbx/fftpack/detail/real_to_complex_backward.h scitbx/fftpack/detail/real_to_complex_forward.h scitbx/fftpack/detail/ref.h scitbx/glmtbx/ scitbx/glmtbx/family.h scitbx/glmtbx/glm.h scitbx/glmtbx/robust_glm.h scitbx/graphics_utils/ scitbx/graphics_utils/colors.h scitbx/lbfgs/ scitbx/lbfgs/drop_convergence_test.h scitbx/lbfgs/raw.h scitbx/lbfgs/raw_reference.h scitbx/lbfgsb/ scitbx/lbfgsb/fortran_interface.h scitbx/lbfgsb/raw.h scitbx/line_search/ scitbx/line_search/more_thuente_1994.h scitbx/line_search/more_thuente_1994_raw.h scitbx/lstbx/ scitbx/lstbx/normal_equations.h scitbx/math/ scitbx/math/2d_zernike_moments.h scitbx/math/accumulators.h scitbx/math/angle_derivative.h scitbx/math/approx_equal.h scitbx/math/atanh.h scitbx/math/basic_statistics.h scitbx/math/bessel.h scitbx/math/cartesian_product_fixed_size.hpp scitbx/math/chebyshev.h scitbx/math/compile_time.h scitbx/math/continued_fraction.h scitbx/math/copysign.h scitbx/math/cubic_equation.h scitbx/math/dihedral.h scitbx/math/distance_difference.h scitbx/math/distributions.h scitbx/math/eigensystem.h scitbx/math/erf.h scitbx/math/euler_angles.h scitbx/math/fast_approx_math.h scitbx/math/floating_point_epsilon.h scitbx/math/g_function.h scitbx/math/gamma.h scitbx/math/gaussian_fit_1d_analytical.h scitbx/math/gcd.h scitbx/math/golay.h scitbx/math/halton.h scitbx/math/icosahedron.h scitbx/math/imaginary.h scitbx/math/inertia_tensor.h scitbx/math/interpolation.h scitbx/math/jacks_expf.h scitbx/math/lambertw.h scitbx/math/least_squares_plane.h scitbx/math/linear_correlation.h scitbx/math/linear_interpolation.h scitbx/math/linear_regression.h scitbx/math/mean_and_variance.h scitbx/math/minimum_covering_sphere.h scitbx/math/modulo.h scitbx/math/namespace.h scitbx/math/numeric_limits.h scitbx/math/orthonormal_basis.h scitbx/math/parabolic_cylinder_d.h scitbx/math/phase_error.h scitbx/math/polygon_intersection.h scitbx/math/principal_axes_of_inertia.h scitbx/math/quadrature.h scitbx/math/r3_rotation.h scitbx/math/resample.h scitbx/math/rotate_around_axis.h scitbx/math/rotation.h scitbx/math/superpose.h scitbx/math/tetrahedron.h scitbx/math/traits.h scitbx/math/unimodular_generator.h scitbx/math/utils.h scitbx/math/weighted_covariance.h scitbx/math/zernike.h scitbx/math/zernike_moments.h scitbx/math/erf/ scitbx/math/erf/constants.h scitbx/math/erf/engine.h scitbx/math/gaussian/ scitbx/math/gaussian/fit.h scitbx/math/gaussian/namespace.h scitbx/math/gaussian/sum.h scitbx/math/gaussian/term.h scitbx/matrix/ scitbx/matrix/as_xyz.h scitbx/matrix/cholesky.h scitbx/matrix/delta_tensors.h scitbx/matrix/diagonal.h scitbx/matrix/eigensystem.h scitbx/matrix/givens.h scitbx/matrix/householder.h scitbx/matrix/inversion.h scitbx/matrix/lu_decomposition.h scitbx/matrix/matrix_vector_operations.h scitbx/matrix/move.h scitbx/matrix/multiply.h scitbx/matrix/norms.h scitbx/matrix/outer_product.h scitbx/matrix/packed.h scitbx/matrix/row_echelon.h scitbx/matrix/row_echelon_full_pivoting.h scitbx/matrix/row_echelon_full_pivoting_impl.h scitbx/matrix/row_echelon_full_pivoting_small.h scitbx/matrix/special_matrices.h scitbx/matrix/svd.h scitbx/matrix/symmetric_rank_1_update.h scitbx/matrix/tensor_rank_2.h scitbx/matrix/tensors.h scitbx/matrix/tests.h scitbx/matrix/transpose_multiply.h scitbx/matrix/triangular_systems.h scitbx/matrix/vector_operations.h scitbx/matrix/tests/ scitbx/matrix/tests/utils.h scitbx/minpack/ scitbx/minpack/levenberg_marquardt.h scitbx/minpack/raw.h scitbx/misc/ scitbx/misc/file_utils.h scitbx/misc/positive_getitem_index.h scitbx/misc/split_lines.h scitbx/random/ scitbx/random/mersenne_twister.h scitbx/random/variate_generator.h scitbx/random/boost_python/ scitbx/random/boost_python/random.h scitbx/rigid_body/ scitbx/rigid_body/array_packing.h scitbx/rigid_body/body_lib.h scitbx/rigid_body/body_t.h scitbx/rigid_body/featherstone.h scitbx/rigid_body/joint_lib.h scitbx/rigid_body/joint_t.h scitbx/rigid_body/matrix_helpers.h scitbx/rigid_body/namespace.h scitbx/rigid_body/spatial_lib.h scitbx/rigid_body/tardy.h scitbx/serialization/ scitbx/serialization/base_256.h scitbx/serialization/double_buffered.h scitbx/serialization/single_buffered.h scitbx/slatec/ scitbx/slatec/lib_c.h scitbx/slatec/lib_cpp.h scitbx/sparse/ scitbx/sparse/approx_equal.h scitbx/sparse/dfs.h scitbx/sparse/io.h scitbx/sparse/lu_factorization.h scitbx/sparse/matrix.h scitbx/sparse/operators.h scitbx/sparse/random.h scitbx/sparse/triangular.h scitbx/sparse/util.h scitbx/sparse/vector.h scitbx/sparse/boost_python/ scitbx/sparse/boost_python/vector.h scitbx/stl/ scitbx/stl/map_as_python_dict.h scitbx/stl/map_fwd.h scitbx/stl/map_wrapper.h scitbx/stl/set_wrapper.h scitbx/stl/vector_as_python_list.h scitbx/stl/vector_io.h scitbx/stl/vector_wrapper.h scitbx/suffixtree/ scitbx/suffixtree/builder.hpp scitbx/suffixtree/edge.hpp scitbx/suffixtree/exception.hpp scitbx/suffixtree/glyph.hpp scitbx/suffixtree/iterator.hpp scitbx/suffixtree/matching_statistics.hpp scitbx/suffixtree/tree.hpp scitbx/suffixtree/word.hpp scitbx/suffixtree/boost_python/ scitbx/suffixtree/boost_python/edge_exports.hpp scitbx/suffixtree/boost_python/iterator_wrapper.hpp scitbx/suffixtree/boost_python/object_extensions.hpp scitbx/suffixtree/boost_python/tree_exports.hpp scitbx/util/ scitbx/util/cpu_timer.h scitbx/wigner/ scitbx/wigner/wigner3j.h sent 1,906,377 bytes received 5,521 bytes 3,823,796.00 bytes/sec total size is 1,886,129 speedup is 0.99 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/error.h smtbx/import_cctbx.h smtbx/import_scitbx_af.h smtbx/ab_initio/ smtbx/ab_initio/density_modification.h smtbx/refinement/ smtbx/refinement/import_cctbx_xray.h smtbx/refinement/least_squares.h smtbx/refinement/weighting_schemes.h smtbx/refinement/constraints/ smtbx/refinement/constraints/affine.h smtbx/refinement/constraints/direction.h smtbx/refinement/constraints/geometrical_hydrogens.h smtbx/refinement/constraints/occupancy.h smtbx/refinement/constraints/proxy.h smtbx/refinement/constraints/reparametrisation.h smtbx/refinement/constraints/rigid.h smtbx/refinement/constraints/same_group.h smtbx/refinement/constraints/scaled_adp.h smtbx/refinement/constraints/scatterer_parameters.h smtbx/refinement/constraints/shared.h smtbx/refinement/constraints/special_position.h smtbx/refinement/constraints/symmetry_equivalent.h smtbx/refinement/constraints/u_eq_dependent_u_iso.h smtbx/refinement/constraints/u_iso_dependent_u_iso.h smtbx/refinement/restraints/ smtbx/refinement/restraints/origin_fixing.h smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/standard_xray.h smtbx/structure_factors/direct/table_based.h sent 182,161 bytes received 512 bytes 365,346.00 bytes/sec total size is 179,686 speedup is 0.98 building file list ... done spotfinder/ spotfinder/applications/ spotfinder/applications/find_active_area.h spotfinder/core_toolbox/ spotfinder/core_toolbox/distl.h spotfinder/core_toolbox/hough.h spotfinder/core_toolbox/libdistl.h spotfinder/core_toolbox/spot_shapes.h spotfinder/core_toolbox/spot_types.h spotfinder/core_toolbox/spotfilter.h spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/singlemask.h spotfinder/dxtbx_toolbox/ spotfinder/dxtbx_toolbox/distl.h spotfinder/dxtbx_toolbox/libdistl.h sent 42,951 bytes received 221 bytes 86,344.00 bytes/sec total size is 41,966 speedup is 0.97 building file list ... done tbxx/ tbxx/alignment.h tbxx/error_utils.hpp tbxx/libc_backtrace.hpp tbxx/optional_copy.hpp tbxx/pretty_type_name.hpp tbxx/time_accu.hpp sent 12,022 bytes received 133 bytes 24,310.00 bytes/sec total size is 11,532 speedup is 0.95 building file list ... done sent 151 bytes received 12 bytes 326.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done ./ boost_adaptbx/ boost_adaptbx/type_id_eq.h cctbx/boost_python/ cctbx/boost_python/flex_fwd.h scitbx/ scitbx/lbfgs_fem.hpp scitbx/array_family/ scitbx/array_family/operator_traits_builtin.h scitbx/array_family/ref_algebra.h scitbx/array_family/ref_apply.h scitbx/array_family/shared_algebra.h scitbx/array_family/shared_apply.h scitbx/array_family/shared_plain_apply.h scitbx/array_family/shared_reductions.h scitbx/array_family/small_algebra.h scitbx/array_family/small_apply.h scitbx/array_family/small_plain_apply.h scitbx/array_family/small_reductions.h scitbx/array_family/tiny_algebra.h scitbx/array_family/tiny_apply.h scitbx/array_family/tiny_plain_apply.h scitbx/array_family/tiny_reductions.h scitbx/array_family/versa_algebra.h scitbx/array_family/versa_apply.h scitbx/array_family/versa_plain_apply.h scitbx/array_family/versa_reductions.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/flex_fwd.h scitbx/array_family/detail/ scitbx/array_family/detail/operator_functors.h scitbx/array_family/detail/std_imports.h smtbx/boost_python/ smtbx/boost_python/flex_fwd.h sent 347,320 bytes received 534 bytes 695,708.00 bytes/sec total size is 345,070 speedup is 0.99 building file list ... done sent 242 bytes received 12 bytes 508.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/ boost_adaptbx/command_line/ boost_adaptbx/command_line/__init__.py boost_adaptbx/command_line/divide_by_zero.py boost_adaptbx/command_line/double_overflow.py boost_adaptbx/command_line/gcd.py boost_adaptbx/command_line/inexact.py boost_adaptbx/command_line/int_overflow.py boost_adaptbx/command_line/lcm.py boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py boost_adaptbx/command_line/segmentation_fault.py boost_adaptbx/command_line/show_environ_usage.py boost_adaptbx/command_line/show_platform_info.py sent 7,880 bytes received 231 bytes 16,222.00 bytes/sec total size is 6,883 speedup is 0.85 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/command_line/ cbflib_adaptbx/command_line/__init__.py cbflib_adaptbx/command_line/dump.py sent 1,533 bytes received 60 bytes 3,186.00 bytes/sec total size is 1,215 speedup is 0.76 building file list ... done sent 139 bytes received 12 bytes 302.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done cctbx/ cctbx/command_line/ cctbx/command_line/__init__.py cctbx/command_line/auto_sharpen.py cctbx/command_line/brehm_diederichs.py cctbx/command_line/cctbx_test_nightly.py cctbx/command_line/cod_select_and_pickle.py cctbx/command_line/diffuse.py cctbx/command_line/eltbx.show_fp_fdp.py cctbx/command_line/euclidean_model_matching.py cctbx/command_line/find_reticular_twin_laws.py cctbx/command_line/form_factor_query.py cctbx/command_line/precession_view.py cctbx/command_line/qscore.py cctbx/command_line/samosa_join.py cctbx/command_line/samosa_scale.py cctbx/command_line/segment_and_split_map.py cctbx/command_line/space_group_info.py cctbx/command_line/structure_factor_timings.py cctbx/command_line/subgroups.py cctbx/command_line/version.py cctbx/command_line/wavelength_units.py cctbx/command_line/web.install.csh sent 43,163 bytes received 421 bytes 87,168.00 bytes/sec total size is 39,872 speedup is 0.91 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done crys3d/ crys3d/command_line/ crys3d/command_line/HKLinfo.py crys3d/command_line/HKLviewer.py crys3d/command_line/__init__.py crys3d/command_line/compare_datasets.py crys3d/command_line/hklview.py crys3d/command_line/make_install_HKLviewer_ChimeraX.py crys3d/command_line/model_viewer.py crys3d/command_line/multiplicity_viewer.py crys3d/command_line/qttbx.view_structure.py crys3d/command_line/visualize_r_factors.py sent 32,588 bytes received 212 bytes 65,600.00 bytes/sec total size is 31,684 speedup is 0.97 building file list ... done dxtbx/ dxtbx/command_line/ dxtbx/command_line/__init__.py dxtbx/command_line/any2nexus.py dxtbx/command_line/debug_memory.py dxtbx/command_line/depends_on.py dxtbx/command_line/detector_superpose.py dxtbx/command_line/display_parallax_correction.py dxtbx/command_line/dlsnxs2cbf.py dxtbx/command_line/image2pickle.py dxtbx/command_line/image_average.py dxtbx/command_line/install_format.py dxtbx/command_line/overload.py dxtbx/command_line/plot_detector_models.py dxtbx/command_line/print_header.py dxtbx/command_line/print_matching_images.py dxtbx/command_line/radial_average.py dxtbx/command_line/read_sequence.py dxtbx/command_line/saturation.py dxtbx/command_line/show_mask_info.py dxtbx/command_line/show_matching_formats.py dxtbx/command_line/show_registry.py sent 84,171 bytes received 402 bytes 169,146.00 bytes/sec total size is 82,437 speedup is 0.97 building file list ... done fable/ fable/command_line/ fable/command_line/__init__.py fable/command_line/cout.py fable/command_line/fem_include_search_paths.py fable/command_line/insert_write_at_start_of_each_procedure.py fable/command_line/read.py fable/command_line/show_calls.py fable/command_line/split.py sent 16,378 bytes received 155 bytes 33,066.00 bytes/sec total size is 15,611 speedup is 0.94 building file list ... done gltbx/ gltbx/command_line/ gltbx/command_line/__init__.py gltbx/command_line/try_imports.py sent 867 bytes received 60 bytes 1,854.00 bytes/sec total size is 606 speedup is 0.65 building file list ... done iotbx/ iotbx/command_line/ iotbx/command_line/__init__.py iotbx/command_line/biomt_reconstruction.py iotbx/command_line/blast_pdb.py iotbx/command_line/build_phil_cache.py iotbx/command_line/cbf_read.py iotbx/command_line/cif.as_miller_arrays.py iotbx/command_line/cif.as_xray_structure.py iotbx/command_line/cif.validate.py iotbx/command_line/cif_as_pdb.py iotbx/command_line/cns.reflection_reader.py iotbx/command_line/cns.sdb_reader.py iotbx/command_line/cns.transfer_crystal_symmetry.py iotbx/command_line/cns_as_mtz.py iotbx/command_line/crystal_symmetry_from_any.py iotbx/command_line/csv_as_mtz.py iotbx/command_line/dano_as_amplitudes.py iotbx/command_line/detector_image_as_png.py iotbx/command_line/distance_least_squares.py iotbx/command_line/dtrek.to_cns.py iotbx/command_line/effective_resolution.py iotbx/command_line/emma.py iotbx/command_line/explore_metric_symmetry.py iotbx/command_line/export_scalepack_unmerged.py iotbx/command_line/file_reader.py iotbx/command_line/flip_symmetric_amino_acids.py iotbx/command_line/french_wilson.py iotbx/command_line/get_pubmed_citation.py iotbx/command_line/lattice_symmetry.py iotbx/command_line/merging_statistics.py iotbx/command_line/mtrix_reconstruction.py iotbx/command_line/mtz.dump.py iotbx/command_line/mtz_as_cif.py iotbx/command_line/patterson_map.py iotbx/command_line/pdb.as_xray_structure.py iotbx/command_line/pdb.b_factor_stats.py iotbx/command_line/pdb.box_around_molecule.py iotbx/command_line/pdb.hierarchy.py iotbx/command_line/pdb.insert_scale_records.py iotbx/command_line/pdb.join_fragment_files.py iotbx/command_line/pdb.link_as_geometry_restraints_edits.py iotbx/command_line/pdb.print_sequence.py iotbx/command_line/pdb.superpose_atoms_by_name.py iotbx/command_line/pdb.superpose_centers_of_mass.py iotbx/command_line/pdb_add_conformations.py iotbx/command_line/pdb_as_cif.py iotbx/command_line/pdb_as_fasta.py iotbx/command_line/pdb_cif_conversion.py iotbx/command_line/pdb_get_citation.py iotbx/command_line/pdb_labels_comparison.py iotbx/command_line/pdb_labels_diff.py iotbx/command_line/pdb_remediator.py iotbx/command_line/pdb_show_connectivity.py iotbx/command_line/pdb_split_models.py iotbx/command_line/phil.py iotbx/command_line/poscar_as_xray_structure.py iotbx/command_line/r_free_flags_accumulation.py iotbx/command_line/r_free_flags_as_cns.py iotbx/command_line/r_free_flags_completion_simple.py iotbx/command_line/reflection_file_converter.py iotbx/command_line/reflection_file_editor.py iotbx/command_line/reflection_file_reader.py iotbx/command_line/reflection_statistics.py iotbx/command_line/reindex.py iotbx/command_line/shelx.as_cif.py iotbx/command_line/shelx.as_xray_structure.py iotbx/command_line/shelx.dump_as_python.py iotbx/command_line/show_distances.py iotbx/command_line/show_systematic_absences.py iotbx/command_line/simple_map_coefficients.py iotbx/command_line/sort_atoms.py iotbx/command_line/split_data_cif.py iotbx/command_line/symmetry_search.py iotbx/command_line/unique_with_biomt.py iotbx/command_line/xplor.map.show_summary.py sent 252,604 bytes received 1,428 bytes 508,064.00 bytes/sec total size is 246,561 speedup is 0.97 building file list ... done libtbx/ libtbx/command_line/ libtbx/command_line/__init__.py libtbx/command_line/add_docstrings_with_ai.py libtbx/command_line/analyse_code_comments.py libtbx/command_line/any2unix.py libtbx/command_line/assert_line_count.py libtbx/command_line/assert_not_show_diff.py libtbx/command_line/assert_stdin.py libtbx/command_line/assert_stdin_contains_strings.py libtbx/command_line/assert_stdin_ends_with.py libtbx/command_line/bash.sh libtbx/command_line/bibtex.sh libtbx/command_line/bootstrap.py libtbx/command_line/bundle_as_exe.py libtbx/command_line/bundle_as_selfx.csh libtbx/command_line/cctbx_chunk.py libtbx/command_line/check_libcpp.py libtbx/command_line/clean_clutter.py libtbx/command_line/clear_paths.py libtbx/command_line/configure.bat libtbx/command_line/configure.sh libtbx/command_line/create_cctbx_bundle_for_installer.py libtbx/command_line/create_install_script_bat.py libtbx/command_line/create_installer.py libtbx/command_line/create_mac_app.py libtbx/command_line/create_selfx.py libtbx/command_line/create_unzipsfx.py libtbx/command_line/create_windows_exe.py libtbx/command_line/csh.sh libtbx/command_line/dtrace.py libtbx/command_line/easy_qsub.py libtbx/command_line/env_run.py libtbx/command_line/epydoc_run.py libtbx/command_line/exec.sh libtbx/command_line/extract_code_from_txt.py libtbx/command_line/find_clutter.py libtbx/command_line/find_files.py libtbx/command_line/find_in_repositories.py libtbx/command_line/find_old_style_classes.py libtbx/command_line/find_pdb_mmcif_problems.py libtbx/command_line/find_reserved_names.py libtbx/command_line/find_under_build.py libtbx/command_line/find_untested.py libtbx/command_line/find_unused_imports.py libtbx/command_line/find_unused_imports_crude.py libtbx/command_line/gdb.sh libtbx/command_line/git_avoid_merges.py libtbx/command_line/help.py libtbx/command_line/import_all_ext.py libtbx/command_line/import_all_python.py libtbx/command_line/install.py libtbx/command_line/install_conda.py libtbx/command_line/ipython_shell_start.py libtbx/command_line/latex.sh libtbx/command_line/line_count.py libtbx/command_line/list_files.py libtbx/command_line/list_modules.py libtbx/command_line/list_source_files_sorted_by_size.py libtbx/command_line/make_dist.py libtbx/command_line/make_sphinx_html.py libtbx/command_line/nequal.py libtbx/command_line/parallel_simple.py libtbx/command_line/path_utility.py libtbx/command_line/pdflatex.sh libtbx/command_line/phil.py libtbx/command_line/prime_factors_of.py libtbx/command_line/printenv.py libtbx/command_line/py_compile_all.py libtbx/command_line/raise_exception_for_testing.py libtbx/command_line/refresh.bat libtbx/command_line/refresh.sh libtbx/command_line/reindent.py libtbx/command_line/remote_processing.py libtbx/command_line/remove_tree.py libtbx/command_line/remove_unused_imports.py libtbx/command_line/resource_monitor_plot.py libtbx/command_line/run_pickled_function.py libtbx/command_line/run_tests_parallel.py libtbx/command_line/scons.py libtbx/command_line/seconds_since_the_epoch.py libtbx/command_line/sge_available_slots.py libtbx/command_line/sge_qstat_counts.py libtbx/command_line/sh.sh libtbx/command_line/show_all_on_path.py libtbx/command_line/show_bin_path.py libtbx/command_line/show_build_options.py libtbx/command_line/show_build_path.py libtbx/command_line/show_but_no_repr.py libtbx/command_line/show_commands.py libtbx/command_line/show_date_and_time.py libtbx/command_line/show_dist_paths.py libtbx/command_line/show_env.py libtbx/command_line/show_environ_usage.py libtbx/command_line/show_full_command_path.py libtbx/command_line/show_host_and_user.py libtbx/command_line/show_include_paths.py libtbx/command_line/show_lib_path.py libtbx/command_line/show_module_dependencies.py libtbx/command_line/show_number_of_processors.py libtbx/command_line/show_numeric_version.py libtbx/command_line/show_numpy_version.py libtbx/command_line/show_python_dependencies.py libtbx/command_line/show_python_sys_executable.py libtbx/command_line/show_pythonpath.py libtbx/command_line/show_repository_paths.py libtbx/command_line/show_tests.py libtbx/command_line/show_variable_names.py libtbx/command_line/sphinx_build.py libtbx/command_line/start_binary_bundle.py libtbx/command_line/start_process.py libtbx/command_line/tcsh.sh libtbx/command_line/unpack_in_sources.csh libtbx/command_line/valgrind.sh libtbx/command_line/wait_for_file.py sent 229,744 bytes received 2,169 bytes 463,826.00 bytes/sec total size is 220,704 speedup is 0.95 building file list ... done mmtbx/ mmtbx/command_line/ mmtbx/command_line/__init__.py mmtbx/command_line/altloc_remediate.py mmtbx/command_line/angle.py mmtbx/command_line/apply_ncs_to_ligand.py mmtbx/command_line/arginine_geometry.py mmtbx/command_line/atom_valence_simple.py mmtbx/command_line/barbed_wire_analysis.py mmtbx/command_line/cablam.py mmtbx/command_line/cablam_idealization.py mmtbx/command_line/cbetadev.py mmtbx/command_line/cc_star.py mmtbx/command_line/chiral_validation.py mmtbx/command_line/cif_as_mtz.py mmtbx/command_line/clashscore.py mmtbx/command_line/clashscore2.py mmtbx/command_line/comparama.py mmtbx/command_line/debug_riding.py mmtbx/command_line/density_modification.py mmtbx/command_line/development_aev.py mmtbx/command_line/development_fem.py mmtbx/command_line/distance_difference.py mmtbx/command_line/dynamics.py mmtbx/command_line/electrons.py mmtbx/command_line/emringer.py mmtbx/command_line/emringer_score.py mmtbx/command_line/estimate_bijvoet_ratio.py mmtbx/command_line/f000.py mmtbx/command_line/fab_elbow_angle.py mmtbx/command_line/fake_f_obs.py mmtbx/command_line/fetch_pdb.py mmtbx/command_line/find_peaks_holes.py mmtbx/command_line/find_residue_in_pdb.py mmtbx/command_line/find_tls_groups.py mmtbx/command_line/fmodel.py mmtbx/command_line/fobs_minus_fobs_map.py mmtbx/command_line/geometry_minimization.py mmtbx/command_line/grow_density.py mmtbx/command_line/hbond.py mmtbx/command_line/helix_sheet_recs_as_pdb_files.py mmtbx/command_line/holton_geometry_validation.py mmtbx/command_line/hydrogenate.py mmtbx/command_line/kinemage.py mmtbx/command_line/ligand_restraints_validation.py mmtbx/command_line/map_box.py mmtbx/command_line/map_comparison.py mmtbx/command_line/map_to_model_histogram.py mmtbx/command_line/map_to_structure_factors.py mmtbx/command_line/maps.py mmtbx/command_line/mask.py mmtbx/command_line/massage_data.py mmtbx/command_line/matthews.py mmtbx/command_line/maximum_entropy_map.py mmtbx/command_line/model_idealization.py mmtbx/command_line/model_map.py mmtbx/command_line/model_model_distances.py mmtbx/command_line/model_vs_data.py mmtbx/command_line/model_vs_map.py mmtbx/command_line/model_vs_sequence.py mmtbx/command_line/models_as_chains.py mmtbx/command_line/molprobity.py mmtbx/command_line/mon_lib_cif_triage.py mmtbx/command_line/mp_geo.py mmtbx/command_line/mp_validate_bonds.py mmtbx/command_line/mtz2map.py mmtbx/command_line/next_gen_atom_typing.py mmtbx/command_line/nonbonded_overlaps.py mmtbx/command_line/omegalyze.py mmtbx/command_line/pdb_atom_selection.py mmtbx/command_line/pdb_interpretation.py mmtbx/command_line/pdbtools.py mmtbx/command_line/perigee.py mmtbx/command_line/plan_sad_experiment.py mmtbx/command_line/polder.py mmtbx/command_line/prepare_pdb_deposition.py mmtbx/command_line/probe2.py mmtbx/command_line/probescore_ligand.py mmtbx/command_line/process_predicted_model.py mmtbx/command_line/prune_model.py mmtbx/command_line/quantum_interface.py mmtbx/command_line/r_factor_statistics.py mmtbx/command_line/rama_z.py mmtbx/command_line/ramalyze.py mmtbx/command_line/rank_scale_map.py mmtbx/command_line/real_space_correlation.py mmtbx/command_line/real_space_diff_map.py mmtbx/command_line/rebuild_cablam_cache.py mmtbx/command_line/rebuild_rotarama_cache.py mmtbx/command_line/reciprocal_space_arrays.py mmtbx/command_line/reduce2.py mmtbx/command_line/reduce_cryoem_resolution.py mmtbx/command_line/refine_anomalous_substructure.py mmtbx/command_line/remove_outliers.py mmtbx/command_line/ribbons.py mmtbx/command_line/rigid_bond_test.py mmtbx/command_line/ringer.py mmtbx/command_line/rna_validate.py mmtbx/command_line/rna_validate_bonds.py mmtbx/command_line/rna_validate_puckers.py mmtbx/command_line/rna_validate_suites.py mmtbx/command_line/rotalyze.py mmtbx/command_line/search_pdb_symmetry.py mmtbx/command_line/secondary_structure_restraints.py mmtbx/command_line/secondary_structure_validation.py mmtbx/command_line/select_best_starting_model.py mmtbx/command_line/show_r_factors_by_shell.py mmtbx/command_line/sisa.py mmtbx/command_line/sort_hetatms.py mmtbx/command_line/ss_idealization.py mmtbx/command_line/suitename.py mmtbx/command_line/suitename_old.py mmtbx/command_line/super.py mmtbx/command_line/superpose.py mmtbx/command_line/taam_minus_iam.py mmtbx/command_line/table_one.py mmtbx/command_line/tls.py mmtbx/command_line/tls_analysis.py mmtbx/command_line/tls_as_xyz.py mmtbx/command_line/undowser.py mmtbx/command_line/undowser2.py mmtbx/command_line/validate_H_cl_app.py mmtbx/command_line/validate_ligands.py mmtbx/command_line/validation_summary.py mmtbx/command_line/verify_mon_lib_data.py mmtbx/command_line/water_b_factors.py mmtbx/command_line/where_is_that_cif_file.py mmtbx/command_line/xmanip.py mmtbx/command_line/xtrapol8.py mmtbx/command_line/xtriage.py mmtbx/regression/ mmtbx/regression/command_line/ mmtbx/regression/command_line/tst_find_residue_in_pdb.py sent 727,869 bytes received 2,479 bytes 1,460,696.00 bytes/sec total size is 717,429 speedup is 0.98 building file list ... done sent 70 bytes received 12 bytes 164.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done rstbx/ rstbx/command_line/ rstbx/command_line/__init__.py rstbx/command_line/example_viewer.py rstbx/command_line/index.py rstbx/command_line/simage.create.py rstbx/command_line/simage.explore_completeness.py rstbx/command_line/simage.solver.py rstbx/command_line/simage.wx_display.py rstbx/command_line/slip_viewer.py rstbx/command_line/viewer.py sent 12,285 bytes received 193 bytes 24,956.00 bytes/sec total size is 11,139 speedup is 0.89 building file list ... done scitbx/ scitbx/command_line/ scitbx/command_line/__init__.py scitbx/command_line/apply_tapenade_hints.py scitbx/command_line/generate_error_h.py scitbx/command_line/histogram.py scitbx/command_line/show_exp_times.py scitbx/command_line/show_sizes.py scitbx/command_line/unicode_examples.py sent 11,852 bytes received 155 bytes 24,014.00 bytes/sec total size is 10,021 speedup is 0.83 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/command_line/ smtbx/command_line/__init__.py smtbx/command_line/absolute_structure.py smtbx/command_line/anom_refine.py smtbx/command_line/benchmark_refinement.py smtbx/command_line/masks.py smtbx/command_line/refine.py sent 38,577 bytes received 136 bytes 77,426.00 bytes/sec total size is 37,436 speedup is 0.97 building file list ... done spotfinder/ spotfinder/command_line/ spotfinder/command_line/__init__.py spotfinder/command_line/find_active_area.py spotfinder/command_line/image_viewer.py spotfinder/command_line/mp_spotfinder_server_read_file.py spotfinder/command_line/signal_strength.py spotfinder/command_line/sweep_strength.py spotfinder/command_line/thin_client.py sent 23,567 bytes received 155 bytes 47,444.00 bytes/sec total size is 22,750 speedup is 0.96 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done wxtbx/ wxtbx/command_line/ wxtbx/command_line/__init__.py wxtbx/command_line/anomalous_differences_histogram.py wxtbx/command_line/b_plot.py wxtbx/command_line/inspect_r_free_flags.py wxtbx/command_line/loggraph.py wxtbx/command_line/pdb_editor.py wxtbx/command_line/pdb_statistics.py wxtbx/command_line/plan_sad_experiment.py wxtbx/command_line/plot_anomalous_scattering.py wxtbx/command_line/show_file_info.py wxtbx/command_line/wxpython.py wxtbx/command_line/xtriage.py sent 17,088 bytes received 250 bytes 34,676.00 bytes/sec total size is 16,108 speedup is 0.93 building file list ... done sent 242 bytes received 12 bytes 508.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/graph/ boost_adaptbx/graph/tests/ boost_adaptbx/graph/tests/tst_graph.py boost_adaptbx/graph/tests/tst_graph_breadth_first_search.py boost_adaptbx/graph/tests/tst_graph_clustering_algorithm.py boost_adaptbx/graph/tests/tst_graph_connected_component_algorithm.py boost_adaptbx/graph/tests/tst_graph_graph_structure_comparison.py boost_adaptbx/graph/tests/tst_graph_maximum_clique.py boost_adaptbx/graph/tests/tst_graph_metric.py boost_adaptbx/graph/tests/tst_graph_min_cut_max_flow.py boost_adaptbx/graph/tests/tst_graph_minimum_cut_enumerate.py boost_adaptbx/graph/tests/tst_graph_utility.py boost_adaptbx/tests/ boost_adaptbx/tests/tst_boost_thread.py boost_adaptbx/tests/tst_char_array.py boost_adaptbx/tests/tst_deprecation_tools.py boost_adaptbx/tests/tst_libc_backtrace.py boost_adaptbx/tests/tst_optional.py boost_adaptbx/tests/tst_optional_copy.cpp boost_adaptbx/tests/tst_optional_copy.h boost_adaptbx/tests/tst_python_streambuf.py boost_adaptbx/tests/tst_rational.py boost_adaptbx/tests/tst_std_pair.py boost_adaptbx/tests/tst_stderr_stdout.py boost_adaptbx/tests/tst_stdin.py boost_adaptbx/tests/tst_stdout.py boost_adaptbx/tests/tst_string_representation.py boost_adaptbx/tests/tst_swig_args.py boost_adaptbx/tests/tst_tuple.py sent 91,617 bytes received 515 bytes 184,264.00 bytes/sec total size is 89,629 speedup is 0.97 building file list ... done cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/tst_memory.cpp sent 1,198 bytes received 34 bytes 2,464.00 bytes/sec total size is 967 speedup is 0.78 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/tst.py ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/tst_fftlib.py sent 9,496 bytes received 60 bytes 19,112.00 bytes/sec total size is 9,204 speedup is 0.96 building file list ... done cctbx/adp_restraints/ cctbx/adp_restraints/tst_ext.py cctbx/adptbx/ cctbx/adptbx/boost_python/ cctbx/adptbx/boost_python/tst_adptbx.py cctbx/adptbx/boost_python/tst_hirshfeld.py cctbx/array_family/ cctbx/array_family/boost_python/ cctbx/array_family/boost_python/tst_flex.py cctbx/covariance/ cctbx/covariance/tests/ cctbx/covariance/tests/tst_covariance.py cctbx/crystal/ cctbx/crystal/tst_distance_based_connectivity.py cctbx/crystal/tst_ext.py cctbx/crystal/tst_super_cell.py cctbx/development/ cctbx/development/tst_cns_epsilon.py cctbx/development/tst_cns_hl.py cctbx/dispersion/ cctbx/dispersion/tests/ cctbx/dispersion/tests/tst_kramers_kronig.py cctbx/dispersion/tests/tst_kramers_kronig_helper.py cctbx/dispersion/tests/tst_kramers_kronig_optimize.py cctbx/dmtbx/ cctbx/dmtbx/boost_python/ cctbx/dmtbx/boost_python/tst_dmtbx.py cctbx/eltbx/ cctbx/eltbx/tests/ cctbx/eltbx/tests/tst_attenuation_coefficient.py cctbx/eltbx/tests/tst_chemical_elements.py cctbx/eltbx/tests/tst_covalent_radii.py cctbx/eltbx/tests/tst_formula.py cctbx/eltbx/tests/tst_henke.py cctbx/eltbx/tests/tst_icsd_radii.py cctbx/eltbx/tests/tst_neutron.py cctbx/eltbx/tests/tst_sasaki.py cctbx/eltbx/tests/tst_tiny_pse.py cctbx/eltbx/tests/tst_wavelengths.py cctbx/eltbx/tests/tst_xray_scattering.py cctbx/examples/ cctbx/examples/tst_exp_i_alpha_derivatives.py cctbx/examples/tst_g_exp_i_alpha_derivatives.py cctbx/examples/tst_phase_o_phrenia.py cctbx/examples/tst_space_subgroups.py cctbx/examples/tst_structure_factor_derivatives.py cctbx/examples/tst_structure_factor_derivatives_2.py cctbx/examples/tst_structure_factor_derivatives_3.py cctbx/examples/tst_structure_factor_derivatives_4.py cctbx/examples/merging/ cctbx/examples/merging/tst_permutations.py cctbx/geometry/ cctbx/geometry/tests/ cctbx/geometry/tests/tst_geometry.py cctbx/geometry_restraints/ cctbx/geometry_restraints/tst_angle_derivs.py cctbx/geometry_restraints/tst_ext.py cctbx/geometry_restraints/tst_motif.py cctbx/geometry_restraints/tst_process_nonbonded_proxies.py cctbx/geometry_restraints/tst_proxy_registry.py cctbx/maptbx/ cctbx/maptbx/tst_asymmetric_map.py cctbx/maptbx/tst_atom_curves.py cctbx/maptbx/tst_atom_radius_as_central_peak_width.py cctbx/maptbx/tst_bcr.py cctbx/maptbx/tst_ccp.py cctbx/maptbx/tst_get_percentile_cutoffs.py cctbx/maptbx/tst_interpolation.py cctbx/maptbx/tst_interpolation_2.py cctbx/maptbx/tst_loft.py cctbx/maptbx/tst_map_peak_3d_as_2d.py cctbx/maptbx/tst_mask.py cctbx/maptbx/tst_peak_volume_estimate.py cctbx/maptbx/tst_qscore.py cctbx/maptbx/tst_real_space_refinement_simple.py cctbx/maptbx/tst_resolution_from_map_and_model.py cctbx/maptbx/tst_target_and_gradients.py cctbx/maptbx/bcr/ cctbx/maptbx/bcr/tst_adp_refine.py cctbx/maptbx/bcr/tst_example.py cctbx/maptbx/bcr/tst_qmap_02.py cctbx/maptbx/bcr/tst_table.py cctbx/maptbx/bcr/tst_two_atoms.py cctbx/maptbx/bcr/tst_vrm.py cctbx/maptbx/bcr/tst_vrm2.py cctbx/maptbx/boost_python/ cctbx/maptbx/boost_python/tst_maptbx.py cctbx/masks/ cctbx/masks/tests/ cctbx/masks/tests/tst_flood_fill.py cctbx/math/ cctbx/math/boost_python/ cctbx/math/boost_python/tst_math.py cctbx/miller/ cctbx/miller/tst_map_to_asu_isym.py cctbx/miller/tst_reindexing.py cctbx/miller/boost_python/ cctbx/miller/boost_python/tst_miller.py cctbx/multipolar/ cctbx/multipolar/regression/ cctbx/multipolar/regression/tst_multipolar.py cctbx/omz/ cctbx/omz/tst_bfgs.py cctbx/omz/tst_cod.csh cctbx/omz/tst_dev.py cctbx/regression/ cctbx/regression/tst_adp_aniso_restraints.py cctbx/regression/tst_adp_constraints.py cctbx/regression/tst_adp_constraints_cartesian.py cctbx/regression/tst_amplitude_normalisation.py cctbx/regression/tst_change_basis.py cctbx/regression/tst_connectivity.py cctbx/regression/tst_connectivity_allsym.py cctbx/regression/tst_coordination_sequences.py cctbx/regression/tst_create_models_or_maps.py cctbx/regression/tst_crystal.py cctbx/regression/tst_crystal_asu_clusters.py cctbx/regression/tst_crystal_close_packing.py cctbx/regression/tst_diffuse.py cctbx/regression/tst_direct_scaling.py cctbx/regression/tst_direct_space_asu.py cctbx/regression/tst_emma.py cctbx/regression/tst_expand_to_p1.py cctbx/regression/tst_f_model.py cctbx/regression/tst_fast_nv1995.py cctbx/regression/tst_fcalc_fft_stability.py cctbx/regression/tst_find_best_cell.py cctbx/regression/tst_fourier_transform_real_part_at_x.py cctbx/regression/tst_french_wilson.py cctbx/regression/tst_geometry_restraints.py cctbx/regression/tst_geometry_restraints_2.py cctbx/regression/tst_geometry_restraints_lbfgs.py cctbx/regression/tst_grm_modifications.py cctbx/regression/tst_grm_modifications_rm.py cctbx/regression/tst_grm_pickling.py cctbx/regression/tst_grouped_data.py cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py cctbx/regression/tst_krivy_gruber.py cctbx/regression/tst_loc_res.py cctbx/regression/tst_map_is_periodic.py cctbx/regression/tst_map_weights_for_symmetry_summation.py cctbx/regression/tst_maptbx_box.py cctbx/regression/tst_maptbx_mask.py cctbx/regression/tst_maptbx_structure_factors.py cctbx/regression/tst_math_module.py cctbx/regression/tst_mem.py cctbx/regression/tst_mem_2.py cctbx/regression/tst_miller.py cctbx/regression/tst_miller_data_manipulation.py cctbx/regression/tst_miller_double_step_filtration.py cctbx/regression/tst_miller_fft_map.py cctbx/regression/tst_miller_lookup_utils.py cctbx/regression/tst_miller_merge_equivalents.py cctbx/regression/tst_miller_statistics.py cctbx/regression/tst_niggli_reduction_cpp.py cctbx/regression/tst_pair_asu_table.py cctbx/regression/tst_pointgroup_tools.py cctbx/regression/tst_prepare_map_for_docking.py cctbx/regression/tst_r_free_utils.py cctbx/regression/tst_reciprocal_space_asu.py cctbx/regression/tst_refine_xray_curvs.py cctbx/regression/tst_reflection_statistics.py cctbx/regression/tst_sampled_model_density.py cctbx/regression/tst_sf_low_res_accuracy.py cctbx/regression/tst_sgtbx.py cctbx/regression/tst_sgtbx_denominators.py cctbx/regression/tst_sgtbx_harker.py cctbx/regression/tst_sgtbx_lattice_symmetry.py cctbx/regression/tst_sgtbx_site_constraints.py cctbx/regression/tst_sgtbx_special_op_simplifier.py cctbx/regression/tst_sgtbx_subgroups.py cctbx/regression/tst_sgtbx_tidy_pickling.py cctbx/regression/tst_show_cosets.py cctbx/regression/tst_space_group_type_tidy_cb_op_t.py cctbx/regression/tst_sphericity.py cctbx/regression/tst_statistics_graphs.py cctbx/regression/tst_triplet_generator.py cctbx/regression/tst_twin_target.py cctbx/regression/tst_wavelength_units.py cctbx/regression/tst_web_change_basis.py cctbx/regression/tst_weighting_schemes.py cctbx/regression/tst_wilson_plot.py cctbx/regression/tst_xray.py cctbx/regression/tst_xray_derivatives.py cctbx/regression/tst_xray_fast_gradients.py cctbx/regression/tst_xray_minimization.py cctbx/regression/tst_xray_minimization_failure.py cctbx/regression/tst_xray_target_functors.py cctbx/sgtbx/ cctbx/sgtbx/boost_python/ cctbx/sgtbx/boost_python/tst_N_fold_rot.py cctbx/sgtbx/boost_python/tst_sgtbx.py cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cctbx/sgtbx/direct_space_asu/proto/tst_asu.py cctbx/symmetry_search/ cctbx/symmetry_search/tests/ cctbx/symmetry_search/tests/tst_from_map.py cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py cctbx/translation_search/ cctbx/translation_search/boost_python/ cctbx/translation_search/boost_python/tst_translation_search.py cctbx/uctbx/ cctbx/uctbx/boost_python/ cctbx/uctbx/boost_python/tst_crystal_orientation.py cctbx/uctbx/boost_python/tst_uctbx.py cctbx/uctbx/lrl/ cctbx/uctbx/lrl/tst_match_lattices.py cctbx/xray/ cctbx/xray/boost_python/ cctbx/xray/boost_python/tst_f_model.py cctbx/xray/boost_python/tst_targets_fd.py cctbx/xray/boost_python/tst_xray.py cctbx/xray/observations/ cctbx/xray/observations/tst_observations.py cctbx/xray/targets/ cctbx/xray/targets/tst_r1.py cctbx/xray/targets/tst_shelxl_wght_ls.py sent 2,096,880 bytes received 3,409 bytes 4,200,578.00 bytes/sec total size is 2,082,707 speedup is 0.99 building file list ... done cma_es/ cma_es/tst_cma_es.py sent 3,163 bytes received 38 bytes 6,402.00 bytes/sec total size is 3,008 speedup is 0.94 building file list ... done crys3d/regression/ crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py crys3d/regression/tst_hklinfo.py crys3d/regression/tst_websocket.py sent 42,501 bytes received 129 bytes 85,260.00 bytes/sec total size is 41,869 speedup is 0.98 building file list ... done sent 595 bytes received 12 bytes 1,214.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done fable/tst_cout.py fable/tst_cout_compile.py fable/tst_equivalence.py fable/tst_ext.py fable/tst_read.py fable/test/ fable/test/tst_command_line.py fable/test/tst_io.py fable/test/tst_separate_files.py fable/test/tst_show_calls.py sent 152,770 bytes received 186 bytes 305,912.00 bytes/sec total size is 151,869 speedup is 0.99 building file list ... done gltbx/tst.py gltbx/tst_ellipsoids.py gltbx/tst_fonts.py gltbx/tst_viewer_utils.py sent 8,480 bytes received 88 bytes 17,136.00 bytes/sec total size is 8,108 speedup is 0.95 building file list ... done iotbx/bioinformatics/ iotbx/bioinformatics/test/ iotbx/bioinformatics/test/tst_alignment_as_hsearch.py iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py iotbx/bioinformatics/test/tst_local_blast.py iotbx/bioinformatics/test/tst_ncbi_blast_xml.py iotbx/ccp4_map/ iotbx/ccp4_map/tst.py iotbx/ccp4_map/tst_input.map iotbx/cif/ iotbx/cif/tests/ iotbx/cif/tests/tst_citations.py iotbx/cif/tests/tst_cod.py iotbx/cif/tests/tst_crystal_symmetry_builder.py iotbx/cif/tests/tst_geometry.py iotbx/cif/tests/tst_lex_parse_build.py iotbx/cif/tests/tst_model.py iotbx/cif/tests/tst_model_builder.py iotbx/cif/tests/tst_parser.py iotbx/cif/tests/tst_restraints.py iotbx/cif/tests/tst_ucif_examples_compilation.py iotbx/cif/tests/tst_validation.py iotbx/cns/ iotbx/cns/tst_cns.py iotbx/detectors/ iotbx/detectors/tst_adsc.py iotbx/detectors/tst_cbf_comp_read_meth.py iotbx/detectors/tst_debug_write.py iotbx/detectors/tst_detectors.py iotbx/detectors/tst_py_cbf.py iotbx/dsn6/ iotbx/dsn6/tst.py iotbx/examples/ iotbx/examples/tst_mtz_free_flipper.py iotbx/examples/pdb_truncate_to_ala/ iotbx/examples/pdb_truncate_to_ala/tst.py iotbx/gui_tools/ iotbx/gui_tools/tst.py iotbx/kriber/ iotbx/kriber/tst_strudat.py iotbx/mtz/ iotbx/mtz/tst.py iotbx/mtz/tst_dano.py iotbx/mtz/tst_ext.py iotbx/mtz/tst_extract_from_symmetry_lib.py iotbx/mtz/tst_miller_dict.py iotbx/mtz/tst_unmerged.py iotbx/pdb/ iotbx/pdb/tst_atom_name_interpretation.py iotbx/pdb/tst_atom_selection.py iotbx/pdb/tst_atom_selection_string.py iotbx/pdb/tst_ext.py iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py iotbx/pdb/tst_hierarchy.py iotbx/pdb/tst_hierarchy_atom_sort.py iotbx/pdb/tst_hierarchy_flip_symmetric.py iotbx/pdb/tst_hierarchy_flip_symmetric_2.py iotbx/pdb/tst_mmcif.py iotbx/pdb/tst_mmcif_hierarchy.py iotbx/pdb/tst_mmcif_hierarchy_2.py iotbx/pdb/tst_pdb.py iotbx/pdb/tst_read_mtrix_records_from_cif.py iotbx/pdb/tst_rna_dna_atom_names.py iotbx/pdb/tst_secondary_structure.py iotbx/pdb/tst_secondary_structure_2.py iotbx/pdb/tst_tls.py iotbx/pdb/tst_utils.py iotbx/pdb/remediation/ iotbx/pdb/remediation/tst_remediator.py iotbx/regression/ iotbx/regression/tst_add_conformations.py iotbx/regression/tst_all_chain_ids.py iotbx/regression/tst_atom_selections_10k.py iotbx/regression/tst_bioinformatics.py iotbx/regression/tst_box_around_molecule.py iotbx/regression/tst_cif_1.py iotbx/regression/tst_cif_as_pdb_1atom.py iotbx/regression/tst_cli_parser.py iotbx/regression/tst_crystal_symmetry_from_any.py iotbx/regression/tst_csv_utils.py iotbx/regression/tst_data_manager.py iotbx/regression/tst_data_plots.py iotbx/regression/tst_examples.py iotbx/regression/tst_export_scalepack_unmerged.py iotbx/regression/tst_extract_xtal_data.py iotbx/regression/tst_fetch.py iotbx/regression/tst_file_reader.py iotbx/regression/tst_generate_n_char_string.py iotbx/regression/tst_group_rounding.py iotbx/regression/tst_hierarchy_altlocs.py iotbx/regression/tst_hierarchy_copy_select.py iotbx/regression/tst_hierarchy_forward_compatible_pdb.py iotbx/regression/tst_hierarchy_id_str.py iotbx/regression/tst_hierarchy_long_chain_ids_1.py iotbx/regression/tst_hierarchy_long_resname_1.py iotbx/regression/tst_hierarchy_long_resname_2.py iotbx/regression/tst_hierarchy_long_resname_3.py iotbx/regression/tst_hierarchy_long_resname_4.py iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py iotbx/regression/tst_hierarchy_occupancies_rounding.py iotbx/regression/tst_hierarchy_pdb_v3.py iotbx/regression/tst_lattice_symmetry.py iotbx/regression/tst_map_manager.py iotbx/regression/tst_map_manager_2.py iotbx/regression/tst_map_manager_wrapping.py iotbx/regression/tst_map_model_manager.py iotbx/regression/tst_map_model_manager_2.py iotbx/regression/tst_map_model_manager_3.py iotbx/regression/tst_map_model_manager_4.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py iotbx/regression/tst_map_model_manager_call_consistency.py iotbx/regression/tst_map_model_manager_cif.py iotbx/regression/tst_map_model_manager_external_sharpening_7.py iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py iotbx/regression/tst_map_model_manager_local_resolution_10.py iotbx/regression/tst_map_model_manager_model_sharpening_5.py iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py iotbx/regression/tst_map_model_manager_tls_from_map_8.py iotbx/regression/tst_map_tools.py iotbx/regression/tst_merging_statistics.py iotbx/regression/tst_miller_sort_asu.py iotbx/regression/tst_mmcif_input.py iotbx/regression/tst_mmcif_multimodel.py iotbx/regression/tst_mmcif_segids.py iotbx/regression/tst_mmcif_to_from_hierarchy.py iotbx/regression/tst_mrc_io.py iotbx/regression/tst_mtz_as_cif.py iotbx/regression/tst_patterson.py iotbx/regression/tst_pdb_as_cif.py iotbx/regression/tst_pdb_as_fasta.py iotbx/regression/tst_pdb_cif_cells.py iotbx/regression/tst_pdb_cif_inputs.py iotbx/regression/tst_pdb_link_records.py iotbx/regression/tst_pdbx_mmcif_tutorial.py iotbx/regression/tst_phases.py iotbx/regression/tst_phil.py iotbx/regression/tst_poscar.py iotbx/regression/tst_reflection_file_editor.py iotbx/regression/tst_reflection_file_reader.py iotbx/regression/tst_reflection_file_utils.py iotbx/regression/tst_reflection_statistics.py iotbx/regression/tst_reindex.py iotbx/regression/tst_restraints_merge.py iotbx/regression/tst_selected_hierarchy_flip.py iotbx/regression/tst_show_systematic_absences.py iotbx/regression/tst_simple_map_coefficients.py iotbx/regression/tst_simple_parser.py iotbx/regression/tst_sort_atoms.py iotbx/regression/tst_split_data_cif.py iotbx/regression/tst_split_models.py iotbx/regression/tst_symmetry.py iotbx/regression/tst_wildcard.py iotbx/regression/tst_xray_scale.py iotbx/regression/ncs/ iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py iotbx/regression/ncs/tst_ncs.py iotbx/regression/ncs/tst_ncs_groups_preprocessing.py iotbx/regression/ncs/tst_ncs_input.py iotbx/regression/ncs/tst_ncs_reordered_chains.py iotbx/regression/ncs/tst_ncs_search_broken_chain.py iotbx/regression/ncs/tst_ncs_search_ligs.py iotbx/regression/ncs/tst_ncs_search_shortcut_1.py iotbx/regression/ncs/tst_ncs_user_selections.py iotbx/regression/ncs/tst_ncs_without_validation.py iotbx/regression/secondary_structure/ iotbx/regression/secondary_structure/tst_annotation.py iotbx/regression/secondary_structure/tst_annotation_long.py iotbx/regression/secondary_structure/tst_sheet.py iotbx/scalepack/ iotbx/scalepack/tst_merge.py iotbx/scalepack/tst_no_merge_original_index.py iotbx/shelx/ iotbx/shelx/tst_fvar_encoding.py iotbx/shelx/tst_hklf.py iotbx/shelx/tst_lex_parse_build.py iotbx/shelx/tst_writer.py iotbx/xds/ iotbx/xds/tests/ iotbx/xds/tests/tst_integrate_hkl.py iotbx/xds/tests/tst_spots_xds.py iotbx/xds/tests/tst_xds_inp.py iotbx/xds/tests/tst_xparm.py iotbx/xplor/ iotbx/xplor/tst_xplormap.py sent 2,505,483 bytes received 3,182 bytes 1,672,443.33 bytes/sec total size is 2,492,940 speedup is 0.99 building file list ... done libtbx/tst_add_docstrings_with_ai.py libtbx/tst_binary_search.py libtbx/tst_citations.py libtbx/tst_containers.py libtbx/tst_dlite.py libtbx/tst_easy_mp.py libtbx/tst_easy_mp_multicore.py libtbx/tst_easy_mp_state.py libtbx/tst_easy_pickle.py libtbx/tst_find_unused_imports.py libtbx/tst_fully_buffered_timeout.py libtbx/tst_mahalanobis.py libtbx/tst_math_utils.py libtbx/tst_object_oriented_patterns.py libtbx/tst_path.py libtbx/tst_program_template.py libtbx/tst_python_code_parsing.py libtbx/tst_representation.py libtbx/tst_run_tests_parallel_retry.py libtbx/tst_run_tests_parallel_unique_dirs.py libtbx/tst_runtime_utils.py libtbx/tst_scheduling.py libtbx/tst_str_utils.py libtbx/tst_thread_utils.py libtbx/tst_topological_sort.py libtbx/tst_utils.py libtbx/tst_version.py libtbx/tst_word_index_generator.py libtbx/tst_xmlrpc_utils.py libtbx/langchain/ libtbx/langchain/agent/ libtbx/langchain/agent/tst_agent_enhancements.py libtbx/langchain/tests/ libtbx/langchain/tests/tst_abort_message_all_stops.py libtbx/langchain/tests/tst_action_item_1.py libtbx/langchain/tests/tst_advice_preprocessing.py libtbx/langchain/tests/tst_api_schema.py libtbx/langchain/tests/tst_audit_fixes.py libtbx/langchain/tests/tst_autosol_bugs.py libtbx/langchain/tests/tst_backward_compat.py libtbx/langchain/tests/tst_best_files_tracker.py libtbx/langchain/tests/tst_command_builder.py libtbx/langchain/tests/tst_contract_compliance.py libtbx/langchain/tests/tst_copies_tracking.py libtbx/langchain/tests/tst_decision_flow.py libtbx/langchain/tests/tst_diagnosed_failure_stop.py libtbx/langchain/tests/tst_directive_extractor.py libtbx/langchain/tests/tst_directive_validator.py libtbx/langchain/tests/tst_directives_integration.py libtbx/langchain/tests/tst_display_data_model.py libtbx/langchain/tests/tst_docs_tools.py libtbx/langchain/tests/tst_dry_run.py libtbx/langchain/tests/tst_error_analyzer.py libtbx/langchain/tests/tst_error_classifier.py libtbx/langchain/tests/tst_event_formatter_file_categories.py libtbx/langchain/tests/tst_event_system.py libtbx/langchain/tests/tst_explanation_prompts.py libtbx/langchain/tests/tst_fabricated_stop_condition.py libtbx/langchain/tests/tst_file_categorization.py libtbx/langchain/tests/tst_file_utils.py libtbx/langchain/tests/tst_fix_verification.py libtbx/langchain/tests/tst_gate_evaluator.py libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py libtbx/langchain/tests/tst_hardcoded_cleanup.py libtbx/langchain/tests/tst_history_analysis.py libtbx/langchain/tests/tst_hypothesis_evaluator.py libtbx/langchain/tests/tst_integration.py libtbx/langchain/tests/tst_intent_classifier.py libtbx/langchain/tests/tst_langchain_tools.py libtbx/langchain/tests/tst_log_extractor.py libtbx/langchain/tests/tst_metric_patterns.py libtbx/langchain/tests/tst_metrics_analyzer.py libtbx/langchain/tests/tst_mtz_crosscheck.py libtbx/langchain/tests/tst_mtz_phases_session_blocking.py libtbx/langchain/tests/tst_n_bugs.py libtbx/langchain/tests/tst_new_programs.py libtbx/langchain/tests/tst_old_client_compat.py libtbx/langchain/tests/tst_pattern_manager.py libtbx/langchain/tests/tst_perceive_stop_checks.py libtbx/langchain/tests/tst_phase0_static_audit.py libtbx/langchain/tests/tst_phase1_contract_gaps.py libtbx/langchain/tests/tst_phase2_path_consistency.py libtbx/langchain/tests/tst_phase3_bug5.py libtbx/langchain/tests/tst_phase3_serialization_symmetry.py libtbx/langchain/tests/tst_phase4_history_flags.py libtbx/langchain/tests/tst_phase5_error_classification.py libtbx/langchain/tests/tst_phase6_category_consumer.py libtbx/langchain/tests/tst_phase7_routing_simulation.py libtbx/langchain/tests/tst_phase8_command_building.py libtbx/langchain/tests/tst_phase9_llm_perturbation.py libtbx/langchain/tests/tst_phaser_multimodel.py libtbx/langchain/tests/tst_phil_validation.py libtbx/langchain/tests/tst_plan_generator.py libtbx/langchain/tests/tst_plan_schema.py libtbx/langchain/tests/tst_program_registration.py libtbx/langchain/tests/tst_sanity_checker.py libtbx/langchain/tests/tst_scenario_tracer.py libtbx/langchain/tests/tst_session_directives.py libtbx/langchain/tests/tst_session_summary.py libtbx/langchain/tests/tst_session_tools.py libtbx/langchain/tests/tst_shared_code_imports.py libtbx/langchain/tests/tst_silent_stop_abort_messages.py libtbx/langchain/tests/tst_state_serialization.py libtbx/langchain/tests/tst_stop_condition_fix.py libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py libtbx/langchain/tests/tst_stop_reason_codes.py libtbx/langchain/tests/tst_stop_reason_prompt.py libtbx/langchain/tests/tst_strategy_memory.py libtbx/langchain/tests/tst_structure_model.py libtbx/langchain/tests/tst_summary_display.py libtbx/langchain/tests/tst_template.py libtbx/langchain/tests/tst_thinking_agent.py libtbx/langchain/tests/tst_thinking_defense.py libtbx/langchain/tests/tst_transport.py libtbx/langchain/tests/tst_utils.py libtbx/langchain/tests/tst_v112_13_fixes.py libtbx/langchain/tests/tst_validate_file_overrides.py libtbx/langchain/tests/tst_validation_history.py libtbx/langchain/tests/tst_workflow_complete_stop.py libtbx/langchain/tests/tst_workflow_state.py libtbx/langchain/tests/tst_yaml_config.py libtbx/langchain/tests/tst_yaml_tools.py libtbx/phil/ libtbx/phil/tst.py libtbx/phil/tst_experimental.py libtbx/phil/tst_interface.py libtbx/phil/tst_tokenizer.py libtbx/queuing_system_utils/ libtbx/queuing_system_utils/tst.py sent 2,442,750 bytes received 2,383 bytes 1,630,088.67 bytes/sec total size is 2,432,426 speedup is 0.99 building file list ... done mmtbx/atomic_environment_vectors/ mmtbx/atomic_environment_vectors/tst.py mmtbx/building/ mmtbx/building/tst_extend_sidechains.py mmtbx/building/tst_extend_sidechains_2.py mmtbx/building/ligands/ mmtbx/building/ligands/tst_00.py mmtbx/building/ligands/tst_00_mmtbx_building_ligands.map mmtbx/bulk_solvent/ mmtbx/bulk_solvent/tst_aniso_scaler.py mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py mmtbx/bulk_solvent/tst_flat_nonuniform.py mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py mmtbx/bulk_solvent/tst_mosaic.py mmtbx/bulk_solvent/tst_scaler.py mmtbx/chemical_components/ mmtbx/chemical_components/tst.py mmtbx/conformation_dependent_library/ mmtbx/conformation_dependent_library/tst_cdl.py mmtbx/conformation_dependent_library/tst_cdl_esd.py mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py mmtbx/conformation_dependent_library/tst_enol_peptide.py mmtbx/conformation_dependent_library/tst_hpdl.py mmtbx/conformation_dependent_library/tst_mcl_01.py mmtbx/conformation_dependent_library/tst_mcl_02.py mmtbx/conformation_dependent_library/tst_mcl_03.py mmtbx/conformation_dependent_library/tst_multi_residue_rna.py mmtbx/conformation_dependent_library/tst_mutli_residue.py mmtbx/conformation_dependent_library/tst_omega_cdl.py mmtbx/conformation_dependent_library/tst_pH_mechanism.py mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py mmtbx/conformation_dependent_library/tst_rdl.py mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py mmtbx/density_modification/ mmtbx/density_modification/tst_density_modification.py mmtbx/disorder/ mmtbx/disorder/tst.py mmtbx/disorder/tst_analyze_model.py mmtbx/disorder/tst_backbone.py mmtbx/dynamics/ mmtbx/dynamics/tst_cartesian_dynamics.py mmtbx/dynamics/tst_sa.py mmtbx/geometry/ mmtbx/geometry/tests/ mmtbx/geometry/tests/tst_altloc.py mmtbx/geometry/tests/tst_asa.py mmtbx/geometry/tests/tst_clash.py mmtbx/geometry/tests/tst_indexing.py mmtbx/geometry/tests/tst_shared_types.py mmtbx/geometry/tests/tst_sphere_surface_sampling.py mmtbx/geometry/tests/tst_topology.py mmtbx/geometry_restraints/ mmtbx/geometry_restraints/tst_c_beta_restraints.py mmtbx/geometry_restraints/tst_geo_file_parsing.py mmtbx/geometry_restraints/tst_manager.py mmtbx/geometry_restraints/tst_ramachandran.py mmtbx/geometry_restraints/tst_reference_coordinate.py mmtbx/geometry_restraints/tst_reference_coordinate2.py mmtbx/geometry_restraints/torsion_restraints/ mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py mmtbx/hydrogens/ mmtbx/hydrogens/tst.py mmtbx/hydrogens/tst_add_hydrogen.py mmtbx/hydrogens/tst_add_hydrogen_0.py mmtbx/hydrogens/tst_add_hydrogen_1.py mmtbx/hydrogens/tst_add_hydrogen_2.py mmtbx/hydrogens/tst_add_hydrogen_3.py mmtbx/hydrogens/tst_add_hydrogen_4.py mmtbx/hydrogens/tst_add_hydrogen_5.py mmtbx/hydrogens/tst_add_hydrogen_6.py mmtbx/hydrogens/tst_add_hydrogen_7.py mmtbx/hydrogens/tst_add_hydrogen_8.py mmtbx/hydrogens/tst_add_hydrogen_9.py mmtbx/hydrogens/tst_add_hydrogen_time.py mmtbx/hydrogens/tst_connectivity.py mmtbx/hydrogens/tst_parameterization_1.py mmtbx/hydrogens/tst_parameterization_2.py mmtbx/hydrogens/tst_parameterization_3.py mmtbx/hydrogens/tst_parameterization_4.py mmtbx/hydrogens/tst_parameterization_5.py mmtbx/hydrogens/tst_parameterization_6.py mmtbx/hydrogens/tst_parameterization_7.py mmtbx/hydrogens/tst_parameterization_8.py mmtbx/hydrogens/tst_parameterization_9.py mmtbx/hydrogens/tst_riding_coefficients.py mmtbx/hydrogens/tst_riding_fd_1.py mmtbx/hydrogens/tst_riding_fd_2.py mmtbx/hydrogens/tst_riding_fd_3.py mmtbx/hydrogens/tst_riding_fd_4.py mmtbx/hydrogens/tst_riding_fd_5.py mmtbx/hydrogens/tst_riding_manager.py mmtbx/hydrogens/tst_riding_minimize.py mmtbx/hydrogens/tst_validate_H.py mmtbx/ias/ mmtbx/ias/tst_ias.py mmtbx/idealized_aa_residues/ mmtbx/idealized_aa_residues/tst.py mmtbx/ions/ mmtbx/ions/tst_environment.py mmtbx/ions/tst_geometries.py mmtbx/ions/tst_parameters.py mmtbx/ions/tst_pick_approx_zn.py mmtbx/ions/tst_pick_ca.py mmtbx/ions/tst_pick_ca_svm.py mmtbx/ions/tst_pick_k.py mmtbx/ions/tst_pick_mg.py mmtbx/ions/tst_pickle.py mmtbx/ions/tst_symmetry_axis.py mmtbx/ions/tst_utils.py mmtbx/ions/tst_validate_ca.py mmtbx/ions/tst_validate_mg.py mmtbx/ions/svm/ mmtbx/ions/svm/tst_classifier_01.py mmtbx/ions/svm/tst_classifier_02.py mmtbx/ligands/ mmtbx/ligands/tst_electron_scripting.py mmtbx/ligands/tst_ready_set_utils.py mmtbx/ligands/tst_xtal_screens.py mmtbx/maps/ mmtbx/maps/tst_composite_omit_map.py mmtbx/maps/tst_composite_omit_map_2.py mmtbx/maps/tst_composite_omit_map_3.py mmtbx/maps/tst_correlation.py mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py mmtbx/masks/ mmtbx/masks/tst_asu_mask.py mmtbx/masks/tst_mask.cpp mmtbx/masks/tst_masks.py mmtbx/max_lik/ mmtbx/max_lik/tst_max_lik.py mmtbx/max_lik/tst_maxlik.py mmtbx/monomer_library/ mmtbx/monomer_library/tst_all_cif_files.py mmtbx/monomer_library/tst_carbo_linking.py mmtbx/monomer_library/tst_chg.py mmtbx/monomer_library/tst_cif_triage.py mmtbx/monomer_library/tst_cif_types.py mmtbx/monomer_library/tst_correct_hydrogens.py mmtbx/monomer_library/tst_deuterium_terminii.py mmtbx/monomer_library/tst_geo_reduce_for_tardy.py mmtbx/monomer_library/tst_glyco_coordination.py mmtbx/monomer_library/tst_glyco_hand.py mmtbx/monomer_library/tst_idealized_aa.py mmtbx/monomer_library/tst_iron_sulfur_clusters.py mmtbx/monomer_library/tst_linking.py mmtbx/monomer_library/tst_metal_coordination.py mmtbx/monomer_library/tst_motif.py mmtbx/monomer_library/tst_neutron_distance.py mmtbx/monomer_library/tst_paral_geo.py mmtbx/monomer_library/tst_pdb_interpretation.py mmtbx/monomer_library/tst_pdb_interpretation_2.py mmtbx/monomer_library/tst_pdb_interpretation_3.py mmtbx/monomer_library/tst_pdb_interpretation_4.py mmtbx/monomer_library/tst_pdb_interpretation_5.py mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py mmtbx/monomer_library/tst_protein_interpretation.py mmtbx/monomer_library/tst_rna_dna_interpretation.py mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py mmtbx/monomer_library/tst_rotamer_utils.py mmtbx/monomer_library/tst_selection.py mmtbx/monomer_library/tst_server.py mmtbx/monomer_library/tst_superpose_ideal.py mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py mmtbx/monomer_library/tst_user_supplied_library.py mmtbx/nci/ mmtbx/nci/tst_hbond.py mmtbx/pair_interaction/ mmtbx/pair_interaction/tst_00.py mmtbx/pair_interaction/tst_01.py mmtbx/pair_interaction/tst_02.py mmtbx/pair_interaction/tst_03.py mmtbx/pair_interaction/tst_04.py mmtbx/pair_interaction/tst_05.py mmtbx/polygon/ mmtbx/polygon/tst.py mmtbx/polygon/tst_gui.py mmtbx/polygon/tst_polygon_data.py mmtbx/probe/ mmtbx/probe/tst_mmtbx_probe_ext.py mmtbx/probe/tst_probe.cpp mmtbx/real_space/ mmtbx/real_space/tst.py mmtbx/reduce/ mmtbx/reduce/tst_mmtbx_reduce_ext.py mmtbx/refinement/ mmtbx/refinement/tst_anomalous_scatterer_groups.py mmtbx/refinement/tst_fit_rotamers.py mmtbx/refinement/tst_group.py mmtbx/refinement/tst_group_2.py mmtbx/refinement/tst_misc.py mmtbx/refinement/tst_occupancy_selections.py mmtbx/refinement/tst_real_space_simple.py mmtbx/refinement/tst_refinement_flags.py mmtbx/refinement/tst_rigid_body.py mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py mmtbx/refinement/tst_select_best_starting_model.py mmtbx/refinement/real_space/ mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py mmtbx/refinement/real_space/tst_fit_residue_0.py mmtbx/refinement/real_space/tst_fit_residue_0H.py mmtbx/refinement/real_space/tst_fit_residue_1.py mmtbx/refinement/real_space/tst_fit_residue_1H.py mmtbx/refinement/real_space/tst_fit_residue_2.py mmtbx/refinement/real_space/tst_fit_residue_3.py mmtbx/refinement/real_space/tst_fit_residue_4.py mmtbx/refinement/real_space/tst_fit_residue_5.py mmtbx/refinement/real_space/tst_fit_residue_6.py mmtbx/refinement/real_space/tst_fit_residue_7.py mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py mmtbx/refinement/real_space/tst_fit_residues_1.py mmtbx/refinement/real_space/tst_fit_residues_1H.py mmtbx/refinement/real_space/tst_fit_residues_2.py mmtbx/refinement/real_space/tst_fit_residues_3.py mmtbx/refinement/real_space/tst_fit_residues_4.py mmtbx/refinement/real_space/tst_fit_residues_5.py mmtbx/refinement/real_space/tst_fit_residues_6.py mmtbx/refinement/real_space/tst_fit_residues_selection.py mmtbx/refinement/real_space/tst_fit_water.py mmtbx/refinement/real_space/tst_individual_sites_1.py mmtbx/refinement/real_space/tst_individual_sites_2.py mmtbx/refinement/real_space/tst_individual_sites_3.py mmtbx/refinement/real_space/tst_monitor.py mmtbx/refinement/real_space/tst_rigid_body.py mmtbx/refinement/real_space/tst_weight.py mmtbx/regression/tst_add_arrows_on_plot.py mmtbx/regression/tst_add_h_to_water.py mmtbx/regression/tst_adp_restraints.py mmtbx/regression/tst_alignment.py mmtbx/regression/tst_altloc_chain_break.py mmtbx/regression/tst_altloc_remediate.py mmtbx/regression/tst_angle.py mmtbx/regression/tst_anomalous_substructure.py mmtbx/regression/tst_apply_cif_restraints.py mmtbx/regression/tst_arginine_geometry.py mmtbx/regression/tst_cc_star.py mmtbx/regression/tst_chain_comparison.py mmtbx/regression/tst_chain_comparison_cif.py mmtbx/regression/tst_cif_as_mtz_wavelengths.py mmtbx/regression/tst_cis_trans_peptide_link.py mmtbx/regression/tst_clashes.py mmtbx/regression/tst_command_line_input.py mmtbx/regression/tst_domains_from_pae.py mmtbx/regression/tst_domains_from_pae_cif.py mmtbx/regression/tst_dynamics_cli.py mmtbx/regression/tst_examples.py mmtbx/regression/tst_find_ncs.py mmtbx/regression/tst_find_ss_structure.py mmtbx/regression/tst_find_ss_structure_cif.py mmtbx/regression/tst_flipping_his.py mmtbx/regression/tst_fmodel.py mmtbx/regression/tst_fmodel_2.py mmtbx/regression/tst_fmodel_and_dm.py mmtbx/regression/tst_fmodel_fd.py mmtbx/regression/tst_fmodel_misc.py mmtbx/regression/tst_fmodel_no_cryst1.py mmtbx/regression/tst_geo_min_restraints_phil.py mmtbx/regression/tst_geometry_minimization.py mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py mmtbx/regression/tst_holton_geometry_validation.py mmtbx/regression/tst_isomorphous_difference_misc.py mmtbx/regression/tst_ligand_ncs.py mmtbx/regression/tst_loop_closure.py mmtbx/regression/tst_lrv.py mmtbx/regression/tst_map_model_cc.py mmtbx/regression/tst_map_type_parser.py mmtbx/regression/tst_maps_misc.py mmtbx/regression/tst_metal_link_1.py mmtbx/regression/tst_minimize_chain.py mmtbx/regression/tst_ml_estimate.py mmtbx/regression/tst_mmtbx_refinement_wrappers.py mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py mmtbx/regression/tst_model_map.py mmtbx/regression/tst_model_vs_map.py mmtbx/regression/tst_model_vs_sequence.py mmtbx/regression/tst_models_to_from_chains.py mmtbx/regression/tst_msa.py mmtbx/regression/tst_mtz2map.py mmtbx/regression/tst_multi_residue_class.py mmtbx/regression/tst_origin_ids.py mmtbx/regression/tst_pdbtools.py mmtbx/regression/tst_polder.py mmtbx/regression/tst_polder_1.py mmtbx/regression/tst_polder_2.py mmtbx/regression/tst_polder_3.py mmtbx/regression/tst_polder_4.py mmtbx/regression/tst_polder_box.py mmtbx/regression/tst_polder_ccs.py mmtbx/regression/tst_probe.py mmtbx/regression/tst_process_predicted_model.py mmtbx/regression/tst_process_predicted_model_cif.py mmtbx/regression/tst_prune_model.py mmtbx/regression/tst_psi_phi_extraction.py mmtbx/regression/tst_rank_scale_map.py mmtbx/regression/tst_rdkit_utils_fragmentation.py mmtbx/regression/tst_real_space_correlation.py mmtbx/regression/tst_reduce.py mmtbx/regression/tst_reduce_cryoem_resolution.py mmtbx/regression/tst_reduce_timeout.py mmtbx/regression/tst_refine_anomalous_substructure.py mmtbx/regression/tst_regularize_from_pdb.py mmtbx/regression/tst_regularize_from_pdb_cif.py mmtbx/regression/tst_ribbons.py mmtbx/regression/tst_rigid_bond_test.py mmtbx/regression/tst_ringer.py mmtbx/regression/tst_sampled_model_density.py mmtbx/regression/tst_scattering_table.py mmtbx/regression/tst_scattering_type_registry.py mmtbx/regression/tst_schrodinger_interface.py mmtbx/regression/tst_sequence_validation.py mmtbx/regression/tst_sort_hetatms.py mmtbx/regression/tst_special_term_at_end.py mmtbx/regression/tst_statistics_output.py mmtbx/regression/tst_superpose.py mmtbx/regression/tst_table_one.py mmtbx/regression/tst_utils.py mmtbx/regression/tst_validate_ligands.py mmtbx/regression/tst_validate_ligands_2.py mmtbx/regression/tst_validation_summary.py mmtbx/regression/discamb/ mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_1.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_2.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_3.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_4.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_5.py mmtbx/regression/discamb/tst_IAM_gradients_1.py mmtbx/regression/discamb/tst_fmodel_fd_discamb.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam_tyr.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_1.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_2.py mmtbx/regression/fix_cablam/ mmtbx/regression/fix_cablam/tst_basic_cl_operations.py mmtbx/regression/fix_cablam/tst_insertion_codes.py mmtbx/regression/fix_cablam/tst_one_resid_rotation.py mmtbx/regression/fix_cablam/tst_single_outliers_surroundings.py mmtbx/regression/model/ mmtbx/regression/model/tst_model.py mmtbx/regression/model/tst_model_2.py mmtbx/regression/model/tst_model_biomt_mtrix.py mmtbx/regression/model/tst_model_biomt_mtrix_2.py mmtbx/regression/model/tst_model_cart_ref_restraints.py mmtbx/regression/model/tst_model_dedeuterate.py mmtbx/regression/model/tst_model_get_vdw_radii.py mmtbx/regression/model/tst_model_merge.py mmtbx/regression/model/tst_model_mtrix.py mmtbx/regression/model/tst_model_ncs.py mmtbx/regression/model/tst_model_neutralize_scatterers.py mmtbx/regression/model/tst_model_pairs_within.py mmtbx/regression/model/tst_model_ramachandran.py mmtbx/regression/model/tst_model_remove_alternative_conformations.py mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py mmtbx/regression/model/tst_model_symmetry.py mmtbx/regression/model/tst_model_tors_ref_restraints.py mmtbx/regression/model/tst_model_utils_merge_models.py mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py mmtbx/regression/model_idealization/ mmtbx/regression/model_idealization/tst_ext_map_01.py mmtbx/regression/model_idealization/tst_ligands.py mmtbx/regression/model_idealization/tst_nomap_01.py mmtbx/regression/model_idealization/tst_nomap_02.py mmtbx/regression/model_idealization/tst_nomap_03.py mmtbx/regression/model_idealization/tst_nomap_04.py mmtbx/regression/model_idealization/tst_with_mtz.py mmtbx/regression/model_idealization/tst_withmap_01.py mmtbx/regression/model_idealization/tst_withmap_02.py mmtbx/regression/model_idealization/tst_withmap_03.py mmtbx/regression/model_idealization/tst_withmap_04.py mmtbx/regression/model_idealization/tst_withmap_05.py mmtbx/regression/model_idealization/tst_withmap_06.py mmtbx/regression/mtz/ mmtbx/regression/mtz/tst_xtriage_fmodel.mtz mmtbx/regression/ncs/ mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py mmtbx/regression/ncs/tst_ncs_restraints_group_list.py mmtbx/regression/ncs/tst_ncs_search.py mmtbx/regression/ncs/tst_ncs_search_flips.py mmtbx/regression/ncs/tst_ncs_utils.py mmtbx/regression/ncs/tst_restraints.py mmtbx/regression/pdb_interpretation/ mmtbx/regression/pdb_interpretation/tst_custom_nb_sym_excl.py mmtbx/regression/pdb_interpretation/tst_edits.py mmtbx/regression/pdb_interpretation/tst_edits_actions.py mmtbx/regression/pdb_interpretation/tst_tardy_geo.py mmtbx/regression/pdb_interpretation/tst_using_ncs_1.py mmtbx/regression/pdb_interpretation/tst_using_ncs_2.py mmtbx/regression/real_space_refine_chain/ mmtbx/regression/real_space_refine_chain/tst_00.py mmtbx/regression/real_space_refine_chain/tst_01.py mmtbx/regression/tls/ mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py mmtbx/regression/tls/tst_get_t_scheme.py mmtbx/regression/tls/tst_tls.py mmtbx/regression/tls/tst_tls_analysis.py mmtbx/regression/tls/tst_tls_as_xyz.py mmtbx/regression/tls/tst_tls_optimise_amplitudes.py mmtbx/regression/tls/tst_tls_refinement_fft.py mmtbx/regression/tls/tst_tls_utils.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py mmtbx/regression/tncs/ mmtbx/regression/tncs/tst_epsfac_and_radius.py mmtbx/regression/tncs/tst_fd.py mmtbx/regression/tncs/tst_moments.py mmtbx/regression/tncs/tst_pair.py mmtbx/ringer/ mmtbx/ringer/tst_em_rscc.py mmtbx/ringer/tst_emringer.py mmtbx/rotamer/ mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py mmtbx/rotamer/tst_rotamer_eval.py mmtbx/rsr/ mmtbx/rsr/tst.py mmtbx/scaling/ mmtbx/scaling/tst_absences.py mmtbx/scaling/tst_bayesian_estimator.py mmtbx/scaling/tst_massage_data.py mmtbx/scaling/tst_mean_f_rms_f.py mmtbx/scaling/tst_outlier.py mmtbx/scaling/tst_plan_sad_experiment.py mmtbx/scaling/tst_scaling.py mmtbx/scaling/tst_sigmaa.py mmtbx/scaling/tst_xtriage.py mmtbx/scaling/tst_xtriage_twin_analyses.py mmtbx/secondary_structure/ mmtbx/secondary_structure/tst.py mmtbx/secondary_structure/tst_insertion_codes.py mmtbx/secondary_structure/tst_segid.py mmtbx/secondary_structure/build/ mmtbx/secondary_structure/build/tst_1.py mmtbx/secondary_structure/build/tst_2.py mmtbx/secondary_structure/build/tst_3.py mmtbx/secondary_structure/build/tst_io.py mmtbx/secondary_structure/build/tst_ss_id_ncs.py mmtbx/utils/ mmtbx/utils/tst_switch_rotamers.py mmtbx/validation/ mmtbx/validation/regression/ mmtbx/validation/regression/tst_cablam.py mmtbx/validation/regression/tst_cablam_2.py mmtbx/validation/regression/tst_cbetadev.py mmtbx/validation/regression/tst_cbetadev_02.py mmtbx/validation/regression/tst_chiral_validation.py mmtbx/validation/regression/tst_clashscore.py mmtbx/validation/regression/tst_clashscore_2.py mmtbx/validation/regression/tst_do_flips_clashscore.py mmtbx/validation/regression/tst_experimental.py mmtbx/validation/regression/tst_find_region_max_value.py mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py mmtbx/validation/regression/tst_keep_hydrogens.py mmtbx/validation/regression/tst_model_properties.py mmtbx/validation/regression/tst_molprobity_1.py mmtbx/validation/regression/tst_molprobity_2.py mmtbx/validation/regression/tst_molprobity_3.py mmtbx/validation/regression/tst_molprobity_4.py mmtbx/validation/regression/tst_molprobity_5.py mmtbx/validation/regression/tst_molprobity_arguments.py mmtbx/validation/regression/tst_mp_geo.py mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py mmtbx/validation/regression/tst_mp_geo_endtoend.py mmtbx/validation/regression/tst_mp_validate_bonds.py mmtbx/validation/regression/tst_omegalyze.py mmtbx/validation/regression/tst_rama_z_01.py mmtbx/validation/regression/tst_rama_z_02.py mmtbx/validation/regression/tst_ramalyze.py mmtbx/validation/regression/tst_ramalyze2.py mmtbx/validation/regression/tst_ramalyze_rare.py mmtbx/validation/regression/tst_restraints.py mmtbx/validation/regression/tst_rna_validate.py mmtbx/validation/regression/tst_rotalyze.py mmtbx/validation/regression/tst_suitename.py mmtbx/validation/regression/tst_symmetry_SS.py mmtbx/validation/regression/tst_undowser.py mmtbx/validation/regression/tst_undowser2.py mmtbx/validation/regression/tst_waters.py mmtbx/wwpdb/ mmtbx/wwpdb/tst_rcsb_entry_request.py mmtbx/wwpdb/tst_rcsb_web_services.py sent 7,763,992 bytes received 8,514 bytes 575,741.19 bytes/sec total size is 7,731,965 speedup is 0.99 building file list ... done omptbx/ omptbx/tst.py sent 1,313 bytes received 38 bytes 900.67 bytes/sec total size is 1,175 speedup is 0.87 building file list ... done rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/tst_detector_model.py rstbx/cftbx/ rstbx/cftbx/tst_coordinate_frame_converter.py rstbx/diffraction/ rstbx/diffraction/tst_ewald_sphere.py rstbx/diffraction/tst_partial_derivatives.py rstbx/diffraction/tst_predict.py rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/tst_bragg_minimal.py rstbx/diffraction/fastbragg/tst_utils_clustering.py rstbx/dps_core/ rstbx/dps_core/tst_iotbx_converter.py rstbx/indexing/ rstbx/indexing/tst_auto_monoscan.py rstbx/indexing/tst_dataset1.py rstbx/simage/ rstbx/simage/tst.py rstbx/simulation/ rstbx/simulation/tst_xfel1_simple.py rstbx/sublattice_support/ rstbx/sublattice_support/tst_sublattice.py rstbx/viewer/ rstbx/viewer/tst.py sent 181,050 bytes received 311 bytes 51,817.43 bytes/sec total size is 179,407 speedup is 0.99 building file list ... done scitbx/array_family/ scitbx/array_family/tst_accessors.cpp scitbx/array_family/tst_af_1.cpp scitbx/array_family/tst_af_2.cpp scitbx/array_family/tst_af_3.cpp scitbx/array_family/tst_af_4.cpp scitbx/array_family/tst_af_5.cpp scitbx/array_family/tst_af_helpers.cpp scitbx/array_family/tst_mat3.cpp scitbx/array_family/tst_optional_copy.cpp scitbx/array_family/tst_rectangular_full_packed.cpp scitbx/array_family/tst_ref_matrix_facet.cpp scitbx/array_family/tst_sym_mat3.cpp scitbx/array_family/tst_unsigned_float_arithmetic.cpp scitbx/array_family/tst_vec3.cpp scitbx/array_family/boost_python/ scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py scitbx/array_family/boost_python/tst_flex.py scitbx/array_family/boost_python/tst_flex_argument_passing.py scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py scitbx/array_family/boost_python/tst_numpy_bridge.py scitbx/array_family/boost_python/tst_shared.py scitbx/array_family/boost_python/tst_smart_selection.py scitbx/dtmin/ scitbx/dtmin/regression/ scitbx/dtmin/regression/tst_dtmin_basic.py scitbx/dtmin/regression/tst_dtmin_booth.py scitbx/dtmin/regression/tst_dtmin_twisted.py scitbx/error/ scitbx/error/tst_error.cpp scitbx/error/tst_error.py scitbx/fftpack/ scitbx/fftpack/boost_python/ scitbx/fftpack/boost_python/tst_fftpack.py scitbx/fftpack/timing/ scitbx/fftpack/timing/tst3d.cpp scitbx/glmtbx/ scitbx/glmtbx/tests/ scitbx/glmtbx/tests/tst.py scitbx/graph/ scitbx/graph/tst_rigidity.py scitbx/graph/tst_tardy_tree.py scitbx/graph/tst_tardy_tree_find_paths.py scitbx/graph/tst_utils.py scitbx/graphics_utils/ scitbx/graphics_utils/tst.py scitbx/iso_surface/ scitbx/iso_surface/tst_iso_surface.m scitbx/iso_surface/tst_iso_surface.py scitbx/lbfgs/ scitbx/lbfgs/tst_curvatures.py scitbx/lbfgs/tst_ext.py scitbx/lbfgs/tst_func_free_line_search.py scitbx/lbfgs/tst_lbfgs.cpp scitbx/lbfgs/tst_lbfgs_fem.py scitbx/lbfgs/tst_mpi_split_evaluator.py scitbx/lbfgsb/ scitbx/lbfgsb/boost_python/ scitbx/lbfgsb/boost_python/tst_fit_cdf.py scitbx/lbfgsb/boost_python/tst_lbfgsb.py scitbx/linalg/ scitbx/linalg/tests/ scitbx/linalg/tests/tst_cholesky.py scitbx/linalg/tests/tst_eigensystem.py scitbx/linalg/tests/tst_lapack_dsyev.py scitbx/linalg/tests/tst_lapack_svd.py scitbx/linalg/tests/tst_matrix.py scitbx/linalg/tests/tst_svd.py scitbx/lstbx/ scitbx/lstbx/tests/ scitbx/lstbx/tests/tst_normal_equations.nb scitbx/lstbx/tests/tst_normal_equations.py scitbx/math/ scitbx/math/tst_2d_zernike.py scitbx/math/tst_bessel_zeros.py scitbx/math/tst_multivariate_moments.py scitbx/math/tst_so3_lie_algebra.py scitbx/math/tst_undirected_graph.py scitbx/math/tst_zernike.py scitbx/math/tst_zernike_mom.py scitbx/math/tests/ scitbx/math/tests/tst.cpp scitbx/math/tests/tst_angle_derivative.py scitbx/math/tests/tst_bessel.py scitbx/math/tests/tst_clustering.py scitbx/math/tests/tst_cubic_equation.py scitbx/math/tests/tst_curve_fitting.py scitbx/math/tests/tst_dmatrix.py scitbx/math/tests/tst_error_propagation_matrix_inverse.py scitbx/math/tests/tst_euler_angles.py scitbx/math/tests/tst_exp_functions.py scitbx/math/tests/tst_fit_peak.py scitbx/math/tests/tst_fit_quadratic_function.py scitbx/math/tests/tst_g_function.py scitbx/math/tests/tst_gaussian.py scitbx/math/tests/tst_gaussian_fit_1d_analytical.py scitbx/math/tests/tst_gcd.py scitbx/math/tests/tst_halton.py scitbx/math/tests/tst_line_search.py scitbx/math/tests/tst_math.py scitbx/math/tests/tst_minimum_covering_ellipsoid.py scitbx/math/tests/tst_orthonormal_basis.py scitbx/math/tests/tst_periodogram.py scitbx/math/tests/tst_quadrature.py scitbx/math/tests/tst_r3_rotation.py scitbx/math/tests/tst_resample.py scitbx/math/tests/tst_similarity_indices.py scitbx/math/tests/tst_superpose.py scitbx/math/tests/tst_tetrahedron.py scitbx/math/tests/tst_uniform_rotation_matrix.py scitbx/math/tests/tst_weighted_correlation.py scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky.cpp scitbx/matrix/tests/tst_givens.cpp scitbx/matrix/tests/tst_householder.cpp scitbx/matrix/tests/tst_householder.nb scitbx/matrix/tests/tst_householder.py scitbx/matrix/tests/tst_row_echelon.py scitbx/matrix/tests/tst_svd.cpp scitbx/matrix/tests/tst_svd.nb scitbx/matrix/tests/tst_svd_accuracy.nb scitbx/minpack/ scitbx/minpack/tst.py scitbx/python_utils/ scitbx/python_utils/tst_graph.py scitbx/python_utils/tst_random_transform.py scitbx/python_utils/tst_robust.py scitbx/random/ scitbx/random/tests/ scitbx/random/tests/tst_random.py scitbx/rigid_body/ scitbx/rigid_body/tst.py scitbx/rigid_body/essence/ scitbx/rigid_body/essence/tst_basic.py scitbx/rigid_body/essence/tst_energy_plots.py scitbx/rigid_body/essence/tst_tardy.py scitbx/rigid_body/proto/ scitbx/rigid_body/proto/tst_featherstone.py scitbx/rigid_body/proto/tst_free_motion.py scitbx/rigid_body/proto/tst_free_motion_hard.py scitbx/rigid_body/proto/tst_joint_lib.py scitbx/rigid_body/proto/tst_molecules.py scitbx/rigid_body/proto/tst_singular.py scitbx/rigid_body/proto/tst_spherical_refinement.py scitbx/serialization/ scitbx/serialization/tst_base_256.cpp scitbx/sparse/ scitbx/sparse/tests/ scitbx/sparse/tests/tst_lu_factorization.py scitbx/sparse/tests/tst_sparse.cpp scitbx/sparse/tests/tst_sparse.py scitbx/stl/ scitbx/stl/tst_map.py scitbx/stl/tst_set.py scitbx/stl/tst_vector.py scitbx/suffixtree/ scitbx/suffixtree/test/ scitbx/suffixtree/test/tst_single.py scitbx/tests/ scitbx/tests/tst_basic.csh scitbx/tests/tst_basic.py scitbx/tests/tst_cubicle_neighbors.py scitbx/tests/tst_genetic_algorithm_with_mp.py scitbx/tests/tst_minimizer_lbfgs_general.py scitbx/tests/tst_r3_utils.py scitbx/tests/tst_regular_grid_on_unit_sphere.py scitbx/tests/tst_smoothing.py scitbx/wigner/ scitbx/wigner/tst_wigner3j.py sent 1,122,958 bytes received 2,622 bytes 450,232.00 bytes/sec total size is 1,112,609 speedup is 0.99 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ab_initio/ smtbx/ab_initio/tests/ smtbx/ab_initio/tests/tst_ab_initio_ext.py smtbx/ab_initio/tests/tst_charge_flipping.py smtbx/absolute_structure/ smtbx/absolute_structure/tests/ smtbx/absolute_structure/tests/tst_absolute_structure.py smtbx/masks/ smtbx/masks/tests/ smtbx/masks/tests/tst_masks.py smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_constrained_structure.py smtbx/refinement/constraints/tests/tst_direction.py smtbx/refinement/constraints/tests/tst_disorder.py smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp smtbx/refinement/constraints/tests/tst_lbfgs.py smtbx/refinement/constraints/tests/tst_occupancies.py smtbx/refinement/constraints/tests/tst_reparametrisation.cpp smtbx/refinement/constraints/tests/tst_reparametrisation.py smtbx/refinement/constraints/tests/tst_rigid.py smtbx/refinement/constraints/tests/tst_same_group.py smtbx/refinement/constraints/tests/tst_special_position.cpp smtbx/refinement/restraints/ smtbx/refinement/restraints/tests/ smtbx/refinement/restraints/tests/tst_adp_restraints.py smtbx/refinement/restraints/tests/tst_manager.py smtbx/refinement/restraints/tests/tst_restraints.py smtbx/refinement/tests/ smtbx/refinement/tests/tst_least_squares.py smtbx/refinement/tests/tst_weighting_schemes.py smtbx/regression/ smtbx/regression/tst_commandline_anomrefine.py smtbx/regression/tst_commandline_refine.py smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/tests/ smtbx/structure_factors/direct/tests/tst_standard_xray.py smtbx/tests/ smtbx/tests/tst_utils.py sent 250,736 bytes received 519 bytes 502,510.00 bytes/sec total size is 248,243 speedup is 0.99 building file list ... done spotfinder/core_toolbox/ spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/tst_small_image.py sent 5,469 bytes received 37 bytes 11,012.00 bytes/sec total size is 5,074 speedup is 0.92 building file list ... done tbxx/ tbxx/tests/ tbxx/tests/tst_pretty_type_name.cpp sent 493 bytes received 41 bytes 356.00 bytes/sec total size is 323 speedup is 0.60 building file list ... done wxtbx/regression/ wxtbx/regression/tst_process_control.py sent 2,011 bytes received 34 bytes 4,090.00 bytes/sec total size is 1,770 speedup is 0.87 building file list ... done ./ annlib_adaptbx/ annlib_adaptbx/tests/ annlib_adaptbx/tests/data.txt annlib_adaptbx/tests/query.txt cctbx/maptbx/bcr/tables/ cctbx/maptbx/bcr/tables/Ag1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag_electron.json.gz cctbx/maptbx/bcr/tables/Ag_wk1995.json.gz cctbx/maptbx/bcr/tables/Al3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Al_electron.json.gz cctbx/maptbx/bcr/tables/Al_wk1995.json.gz cctbx/maptbx/bcr/tables/Au1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au_electron.json.gz cctbx/maptbx/bcr/tables/Au_wk1995.json.gz cctbx/maptbx/bcr/tables/B_electron.json.gz cctbx/maptbx/bcr/tables/B_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba_electron.json.gz cctbx/maptbx/bcr/tables/Ba_wk1995.json.gz cctbx/maptbx/bcr/tables/Br1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Br_electron.json.gz cctbx/maptbx/bcr/tables/Br_wk1995.json.gz cctbx/maptbx/bcr/tables/C_electron.json.gz cctbx/maptbx/bcr/tables/C_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca_electron.json.gz cctbx/maptbx/bcr/tables/Ca_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd_electron.json.gz cctbx/maptbx/bcr/tables/Cd_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl_electron.json.gz cctbx/maptbx/bcr/tables/Cl_wk1995.json.gz cctbx/maptbx/bcr/tables/Co2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co_electron.json.gz cctbx/maptbx/bcr/tables/Co_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr_electron.json.gz cctbx/maptbx/bcr/tables/Cr_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu_electron.json.gz cctbx/maptbx/bcr/tables/Cu_wk1995.json.gz cctbx/maptbx/bcr/tables/D1-_wk1995.json.gz cctbx/maptbx/bcr/tables/D_wk1995.json.gz cctbx/maptbx/bcr/tables/F1-_wk1995.json.gz cctbx/maptbx/bcr/tables/F_electron.json.gz cctbx/maptbx/bcr/tables/F_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe_electron.json.gz cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz cctbx/maptbx/bcr/tables/H_electron.json.gz cctbx/maptbx/bcr/tables/H_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg_electron.json.gz cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz cctbx/maptbx/bcr/tables/I_electron.json.gz cctbx/maptbx/bcr/tables/I_wk1995.json.gz cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz cctbx/maptbx/bcr/tables/K_electron.json.gz cctbx/maptbx/bcr/tables/K_wk1995.json.gz cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Li_electron.json.gz cctbx/maptbx/bcr/tables/Li_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg_electron.json.gz cctbx/maptbx/bcr/tables/Mg_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn_electron.json.gz cctbx/maptbx/bcr/tables/Mn_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo5+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo6+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo_electron.json.gz cctbx/maptbx/bcr/tables/Mo_wk1995.json.gz cctbx/maptbx/bcr/tables/N_electron.json.gz cctbx/maptbx/bcr/tables/N_wk1995.json.gz cctbx/maptbx/bcr/tables/Na1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Na_electron.json.gz cctbx/maptbx/bcr/tables/Na_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni_electron.json.gz cctbx/maptbx/bcr/tables/Ni_wk1995.json.gz cctbx/maptbx/bcr/tables/O1-_wk1995.json.gz cctbx/maptbx/bcr/tables/O2-_wk1995.json.gz cctbx/maptbx/bcr/tables/O_electron.json.gz cctbx/maptbx/bcr/tables/O_wk1995.json.gz cctbx/maptbx/bcr/tables/P_electron.json.gz cctbx/maptbx/bcr/tables/P_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt_electron.json.gz cctbx/maptbx/bcr/tables/Pt_wk1995.json.gz cctbx/maptbx/bcr/tables/S_electron.json.gz cctbx/maptbx/bcr/tables/S_wk1995.json.gz cctbx/maptbx/bcr/tables/Se_electron.json.gz cctbx/maptbx/bcr/tables/Se_wk1995.json.gz cctbx/maptbx/bcr/tables/Si4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Si_electron.json.gz cctbx/maptbx/bcr/tables/Si_wk1995.json.gz cctbx/maptbx/bcr/tables/T1-_wk1995.json.gz 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iotbx/regression/data/pdb1zff.ent iotbx/regression/data/phaser_1.mtz iotbx/regression/data/shelx.ins iotbx/xds/tests/INTEGRATE.HKL iotbx/xds/tests/NEW_XPARM.XDS iotbx/xds/tests/XDS.INP iotbx/xds/tests/XDS_2.INP iotbx/xds/tests/XPARM.XDS libtbx/citations.params mmtbx/regression/pdbs/ mmtbx/regression/pdbs/1ucs_cutted_xyz_rounded.pdb mmtbx/regression/pdbs/1yjp_h.pdb mmtbx/regression/pdbs/7n2l.pdb mmtbx/regression/pdbs/AF_json_v3.cif mmtbx/regression/pdbs/AF_json_v3.pdb mmtbx/regression/pdbs/Fe_1brf_snip_reduced.pdb mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.cif mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.pdb mmtbx/regression/pdbs/ligand_before_prot.pdb mmtbx/regression/pdbs/one_chain_ligand_water.pdb mmtbx/regression/pdbs/p9.pdb mmtbx/regression/pdbs/pae.pdb mmtbx/regression/pdbs/pae_model.cif mmtbx/regression/pdbs/pae_model.pdb mmtbx/regression/pdbs/test1.cif mmtbx/regression/pdbs/two_chains.pdb mmtbx/regression/pdbs/two_chains_ligand_water.pdb rstbx/indexing/results2.dat rstbx/indexing/si_brief.dat rstbx/indexing/si_synthetic.dat scitbx/array_family/boost_python/regression_test.py scitbx/tests/__init__.py scitbx/tests/differential_evolution.py scitbx/tests/direct_search_simulated_annealing.py scitbx/tests/golden_section_search.py scitbx/tests/simplex.py smtbx/regression/test_data/ smtbx/regression/test_data/sucrose_p1.res smtbx/regression/test_data/thpp.cif smtbx/regression/test_data/thpp.hkl smtbx/regression/test_data/thpp.ins sent 84,872,271 bytes received 11,272 bytes 24,252,440.86 bytes/sec total size is 84,750,513 speedup is 1.00 I: pybuild base:385: debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp --pyver=3.13 --srcdir=/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 --builddir='/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build'_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx' debian/install-cctbx.sh: line 7: 0: command not found --destdir '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp' --pyver '3.13' --srcdir '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' --builddir '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_' --modules 'annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx' -- Installing CCTBX into a FHS system Modules: annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx From the source /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 and build /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_ To the FHS : destdir /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp pyver 3.13 bindir /usr/bin incdir /usr/include pkglibdir /usr/lib/cctbx/python3.13 libdir /usr/lib/loongarch64-linux-gnu pythondir /usr/lib/python3.13/dist-packages with PYTHONPATH /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build Copying libtbx_env from /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/.pybuild/cpython3_3.13_cctbx/build_ to /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13 {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="bin/fable.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", 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relocatable="bin/dxtbx.overload"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../dxtbx/src/dxtbx/command_line/overload.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="bin/dxtbx.any2nexus"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../dxtbx/src/dxtbx/command_line/any2nexus.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="bin/dxtbx.detector_superpose"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../dxtbx/src/dxtbx/command_line/detector_superpose.py"), 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relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../libtbx/command_line/nequal.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="bin/libtbx.import_all_python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../libtbx/command_line/import_all_python.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="bin/libtbx.valgrind"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../libtbx/command_line/valgrind.sh"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="bin/libtbx.wait_for_file"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../libtbx/command_line/wait_for_file.py")}, 'bin_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="bin"), 'boost_version': 109000, 'build_options': , 'build_path': absolute_path("/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="exe"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="include"), 'installed': False, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="lib"), 'missing_for_build': set(), 'missing_for_use': set(), 'missing_optional': {'probe', 'cbflib', 'reduce', 'king', 'docutils'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../annlib"), 'annlib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../annlib_adaptbx"), 'boost': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../boost"), 'boost_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../cctbx"), 'chiltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../chiltbx"), 'cma_es': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../cma_es"), 'crys3d': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../crys3d"), 'dxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../dxtbx"), 'fable': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../fable"), 'gltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../gltbx"), 'iotbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../iotbx"), 'libtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../libtbx"), 'mmtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../mmtbx"), 'omptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../omptbx"), 'rstbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../rstbx"), 'scitbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../scitbx"), 'serialtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../serialtbx"), 'smtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../smtbx"), 'spotfinder': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../spotfinder"), 'tbxx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../tbxx"), 'ucif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../ucif"), 'wxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../wxtbx")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': False, 'path_utility': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="/usr/bin/python3.13"), 'python_version_major_minor': (3, 13), 'pythonpath': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../.."), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../../boost_adaptbx"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="lib"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="/usr/lib/python3.13/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="/usr/lib/python3/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="/usr/local/lib/python3.13/dist-packages")], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="../../..")], 'scons_dist_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13", relocatable="/usr")} Saved /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1/debian/tmp/usr/lib/cctbx/python3.13/libtbx_env env {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/usr", relocatable="bin/ccp4io.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/crys3d.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/smtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/gltbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/spotfinder.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/serialtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.simage.create"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/simage.create.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.image_viewer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/slip_viewer.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.image_viewer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/viewer.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.simage.solver"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/simage.solver.py"), relocatable_path(anchor="/usr", relocatable="bin/rstbx.simage.wx_display"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx/command_line/simage.wx_display.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.plan_sad_experiment"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/plan_sad_experiment.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.loggraph"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/loggraph.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.pdb_editor"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/pdb_editor.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.inspect_r_free_flags"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/inspect_r_free_flags.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.plot_anomalous_scattering"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.xtriage"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/xtriage.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.xtriage_gui"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/xtriage.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.anomalous_differences_histogram"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.bfactor_plot"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/b_plot.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.wxpython"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/wxpython.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.show_file_info"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/show_file_info.py"), relocatable_path(anchor="/usr", relocatable="bin/mmtbx.pdb_statistics"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/pdb_statistics.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.install_format"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/install_format.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.show_matching_formats"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/show_matching_formats.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.print_header"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/print_header.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.plot_detector_models"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/plot_detector_models.py"), relocatable_path(anchor="/usr", relocatable="bin/dev.dxtbx.read_sequence"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/read_sequence.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.depends_on"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/depends_on.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.radial_average"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/radial_average.py"), relocatable_path(anchor="/usr", relocatable="bin/dev.dxtbx.debug_memory"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/debug_memory.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.saturation"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/saturation.py"), relocatable_path(anchor="/usr", relocatable="bin/dxtbx.show_mask_info"): relocatable_path(anchor="/usr", 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relocatable="bin/iotbx.merging_statistics"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/merging_statistics.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.cns.sdb_reader"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/cns.sdb_reader.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.r_free_flags_accumulation"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/r_free_flags_accumulation.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.pdb.sort_atoms"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/sort_atoms.py"), relocatable_path(anchor="/usr", relocatable="bin/phenix.pdb.hierarchy"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/pdb.hierarchy.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.pdb_labels_diff"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/pdb_labels_diff.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.pdb.superpose_atoms_by_name"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.cif.as_miller_arrays"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/cif.as_miller_arrays.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.blast_pdb"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/blast_pdb.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.pdb.flip_symmetric_amino_acids"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.pdb.box_around_molecule"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/pdb.box_around_molecule.py"), relocatable_path(anchor="/usr", relocatable="bin/iotbx.cif.as_xray_structure"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/cif.as_xray_structure.py"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.13"), relocatable_path(anchor="/usr", relocatable="bin/libtbx.csh"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/csh.sh")}, 'bin_path': relocatable_path(anchor="/usr", relocatable="bin"), 'boost_version': 109000, 'build_options': , 'build_path': absolute_path("/usr/lib/cctbx/python3.13"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/usr", relocatable="bin"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/usr", relocatable="include"), 'installed': True, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/usr", relocatable="lib"), 'missing_for_build': set(), 'missing_for_use': set(), 'missing_optional': {'probe', 'cbflib', 'reduce', 'king', 'docutils'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/annlib"), 'annlib_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/annlib_adaptbx"), 'boost': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost"), 'boost_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx"), 'chiltbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/chiltbx"), 'cma_es': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cma_es"), 'crys3d': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d"), 'dxtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx"), 'fable': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/fable"), 'gltbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/gltbx"), 'iotbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx"), 'libtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx"), 'mmtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx"), 'omptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/omptbx"), 'rstbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx"), 'scitbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/scitbx"), 'serialtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/serialtbx"), 'smtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/smtbx"), 'spotfinder': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder"), 'tbxx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/tbxx"), 'ucif': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ucif"), 'wxtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': True, 'path_utility': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/usr", relocatable="bin/python3.13"), 'python_version_major_minor': (3, 13), 'pythonpath': [], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages")], 'scons_dist_path': relocatable_path(anchor="/usr", relocatable=".")} building file list ... done ./ boost_adaptbx/ boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy iotbx/ iotbx/pdb/ iotbx/pdb/hybrid_36_fem scitbx/ scitbx/array_family/ scitbx/array_family/tst_accessors scitbx/array_family/tst_af_1 scitbx/array_family/tst_af_2 scitbx/array_family/tst_af_3 scitbx/array_family/tst_af_4 scitbx/array_family/tst_af_5 scitbx/array_family/tst_mat3 scitbx/array_family/tst_optional_copy scitbx/array_family/tst_rectangular_full_packed scitbx/array_family/tst_ref_matrix_facet scitbx/array_family/tst_sym_mat3 scitbx/array_family/tst_unsigned_float_arithmetic scitbx/array_family/tst_vec3 scitbx/error/ scitbx/error/tst_error scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky scitbx/matrix/tests/tst_givens scitbx/matrix/tests/tst_householder scitbx/matrix/tests/tst_svd scitbx/serialization/ scitbx/serialization/tst_base_256 smtbx/ smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens smtbx/refinement/constraints/tests/tst_reparametrisation smtbx/refinement/constraints/tests/tst_special_position sent 16,855,170 bytes received 568 bytes 33,711,476.00 bytes/sec total size is 16,843,352 speedup is 1.00 building file list ... done ./ libann_adaptor.so.0.0.1 libasymmetric_map.so.0.0.1 libcbf-private.so.0.0.1 libccp4io.so.0.0.1 libcctbx.so.0.0.1 libcctbx_sgtbx_asu.so.0.0.1 libdxtbxspotfinder.so.0.0.1 libiotbx_mtz.so.0.0.1 libiotbx_pdb.so.0.0.1 libiotbx_xplor.so.0.0.1 libmmtbx_masks.so.0.0.1 libmmtbx_tls.so.0.0.1 libomptbx.so.0.0.1 librstbx.so.0.0.1 libscitbx_boost_python.so.0.0.1 libscitbx_minpack.so.0.0.1 libscitbx_slatec.so.0.0.1 libsmtbx_refinement_constraints.so.0.0.1 libspotfinder.so.0.0.1 sent 58,337,532 bytes received 494 bytes 8,975,080.92 bytes/sec total size is 58,320,386 speedup is 1.00 building file list ... done sent 112 bytes received 12 bytes 248.00 bytes/sec total size is 2,068 speedup is 16.68 building file list ... done boost_adaptbx/ sent 753 bytes received 19 bytes 1,544.00 bytes/sec total size is 72,301 speedup is 93.65 building file list ... done sent 369 bytes received 12 bytes 762.00 bytes/sec total size is 21,627 speedup is 56.76 building file list ... done sent 567 bytes received 12 bytes 1,158.00 bytes/sec total size is 86,686 speedup is 149.72 building file list ... done sent 7,189 bytes received 12 bytes 14,402.00 bytes/sec total size is 1,929,959 speedup is 268.01 building file list ... done sent 119 bytes received 12 bytes 262.00 bytes/sec total size is 6,671 speedup is 50.92 building file list ... done sent 190 bytes received 12 bytes 404.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 1,095 bytes received 12 bytes 2,214.00 bytes/sec total size is 397,404 speedup is 358.99 building file list ... done ./ sent 1,215 bytes received 19 bytes 2,468.00 bytes/sec total size is 201,540 speedup is 163.32 building file list ... done sent 311 bytes received 12 bytes 646.00 bytes/sec total size is 597,954 speedup is 1,851.25 building file list ... done sent 1,474 bytes received 12 bytes 2,972.00 bytes/sec total size is 270,145 speedup is 181.79 building file list ... done sent 1,279 bytes received 12 bytes 2,582.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 3,182 bytes received 12 bytes 6,388.00 bytes/sec total size is 2,046,334 speedup is 640.68 building file list ... done sent 123 bytes received 12 bytes 270.00 bytes/sec total size is 1,850 speedup is 13.70 building file list ... done sent 1,054 bytes received 12 bytes 2,132.00 bytes/sec total size is 109,476 speedup is 102.70 building file list ... done scitbx/ scitbx/array_family/ scitbx/array_family/boost_python/ scitbx/array_family/detail/ sent 7,775 bytes received 32 bytes 15,614.00 bytes/sec total size is 1,886,129 speedup is 241.59 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 1,359 bytes received 12 bytes 2,742.00 bytes/sec total size is 179,686 speedup is 131.06 building file list ... done sent 536 bytes received 12 bytes 1,096.00 bytes/sec total size is 41,966 speedup is 76.58 building file list ... done sent 225 bytes received 12 bytes 474.00 bytes/sec total size is 11,532 speedup is 48.66 building file list ... done sent 151 bytes received 12 bytes 326.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done ./ boost_adaptbx/ boost_adaptbx/type_id_eq.h cctbx/ cctbx/boost_python/ cctbx/boost_python/flex_fwd.h scitbx/ scitbx/lbfgs_fem.hpp scitbx/array_family/ scitbx/array_family/operator_traits_builtin.h scitbx/array_family/ref_algebra.h scitbx/array_family/ref_apply.h scitbx/array_family/shared_algebra.h scitbx/array_family/shared_apply.h scitbx/array_family/shared_plain_apply.h scitbx/array_family/shared_reductions.h scitbx/array_family/small_algebra.h scitbx/array_family/small_apply.h scitbx/array_family/small_plain_apply.h scitbx/array_family/small_reductions.h scitbx/array_family/tiny_algebra.h scitbx/array_family/tiny_apply.h scitbx/array_family/tiny_plain_apply.h scitbx/array_family/tiny_reductions.h scitbx/array_family/versa_algebra.h scitbx/array_family/versa_apply.h scitbx/array_family/versa_plain_apply.h scitbx/array_family/versa_reductions.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/flex_fwd.h scitbx/array_family/detail/ scitbx/array_family/detail/operator_functors.h scitbx/array_family/detail/std_imports.h smtbx/ smtbx/boost_python/ smtbx/boost_python/flex_fwd.h sent 347,329 bytes received 540 bytes 231,912.67 bytes/sec total size is 345,070 speedup is 0.99 building file list ... done sent 242 bytes received 12 bytes 508.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/ boost_adaptbx/command_line/ boost_adaptbx/command_line/__init__.py boost_adaptbx/command_line/divide_by_zero.py boost_adaptbx/command_line/double_overflow.py boost_adaptbx/command_line/gcd.py boost_adaptbx/command_line/inexact.py boost_adaptbx/command_line/int_overflow.py boost_adaptbx/command_line/lcm.py boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py boost_adaptbx/command_line/segmentation_fault.py boost_adaptbx/command_line/show_environ_usage.py boost_adaptbx/command_line/show_platform_info.py sent 7,880 bytes received 231 bytes 5,407.33 bytes/sec total size is 6,883 speedup is 0.85 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/command_line/ cbflib_adaptbx/command_line/__init__.py cbflib_adaptbx/command_line/dump.py sent 1,533 bytes received 60 bytes 3,186.00 bytes/sec total size is 1,215 speedup is 0.76 building file list ... done sent 139 bytes received 12 bytes 302.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done cctbx/ cctbx/command_line/ cctbx/command_line/__init__.py cctbx/command_line/auto_sharpen.py cctbx/command_line/brehm_diederichs.py cctbx/command_line/cctbx_test_nightly.py cctbx/command_line/cod_select_and_pickle.py cctbx/command_line/diffuse.py cctbx/command_line/eltbx.show_fp_fdp.py cctbx/command_line/euclidean_model_matching.py cctbx/command_line/find_reticular_twin_laws.py cctbx/command_line/form_factor_query.py cctbx/command_line/precession_view.py cctbx/command_line/qscore.py cctbx/command_line/samosa_join.py cctbx/command_line/samosa_scale.py cctbx/command_line/segment_and_split_map.py cctbx/command_line/space_group_info.py cctbx/command_line/structure_factor_timings.py cctbx/command_line/subgroups.py cctbx/command_line/version.py cctbx/command_line/wavelength_units.py cctbx/command_line/web.install.csh sent 43,163 bytes received 421 bytes 29,056.00 bytes/sec total size is 39,872 speedup is 0.91 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done crys3d/ crys3d/command_line/ crys3d/command_line/HKLinfo.py crys3d/command_line/HKLviewer.py crys3d/command_line/__init__.py crys3d/command_line/compare_datasets.py crys3d/command_line/hklview.py crys3d/command_line/make_install_HKLviewer_ChimeraX.py crys3d/command_line/model_viewer.py crys3d/command_line/multiplicity_viewer.py crys3d/command_line/qttbx.view_structure.py crys3d/command_line/visualize_r_factors.py sent 32,588 bytes received 212 bytes 65,600.00 bytes/sec total size is 31,684 speedup is 0.97 building file list ... done dxtbx/ dxtbx/command_line/ dxtbx/command_line/__init__.py dxtbx/command_line/any2nexus.py dxtbx/command_line/debug_memory.py dxtbx/command_line/depends_on.py dxtbx/command_line/detector_superpose.py dxtbx/command_line/display_parallax_correction.py dxtbx/command_line/dlsnxs2cbf.py dxtbx/command_line/image2pickle.py dxtbx/command_line/image_average.py dxtbx/command_line/install_format.py dxtbx/command_line/overload.py dxtbx/command_line/plot_detector_models.py dxtbx/command_line/print_header.py dxtbx/command_line/print_matching_images.py dxtbx/command_line/radial_average.py dxtbx/command_line/read_sequence.py dxtbx/command_line/saturation.py dxtbx/command_line/show_mask_info.py dxtbx/command_line/show_matching_formats.py dxtbx/command_line/show_registry.py sent 84,171 bytes received 402 bytes 169,146.00 bytes/sec total size is 82,437 speedup is 0.97 building file list ... done fable/ fable/command_line/ fable/command_line/__init__.py fable/command_line/cout.py fable/command_line/fem_include_search_paths.py fable/command_line/insert_write_at_start_of_each_procedure.py fable/command_line/read.py fable/command_line/show_calls.py fable/command_line/split.py sent 16,378 bytes received 155 bytes 11,022.00 bytes/sec total size is 15,611 speedup is 0.94 building file list ... done gltbx/ gltbx/command_line/ gltbx/command_line/__init__.py gltbx/command_line/try_imports.py sent 867 bytes received 60 bytes 1,854.00 bytes/sec total size is 606 speedup is 0.65 building file list ... done iotbx/ iotbx/command_line/ iotbx/command_line/__init__.py iotbx/command_line/biomt_reconstruction.py iotbx/command_line/blast_pdb.py iotbx/command_line/build_phil_cache.py iotbx/command_line/cbf_read.py iotbx/command_line/cif.as_miller_arrays.py iotbx/command_line/cif.as_xray_structure.py iotbx/command_line/cif.validate.py iotbx/command_line/cif_as_pdb.py iotbx/command_line/cns.reflection_reader.py iotbx/command_line/cns.sdb_reader.py iotbx/command_line/cns.transfer_crystal_symmetry.py iotbx/command_line/cns_as_mtz.py iotbx/command_line/crystal_symmetry_from_any.py iotbx/command_line/csv_as_mtz.py iotbx/command_line/dano_as_amplitudes.py iotbx/command_line/detector_image_as_png.py iotbx/command_line/distance_least_squares.py iotbx/command_line/dtrek.to_cns.py iotbx/command_line/effective_resolution.py iotbx/command_line/emma.py iotbx/command_line/explore_metric_symmetry.py iotbx/command_line/export_scalepack_unmerged.py iotbx/command_line/file_reader.py iotbx/command_line/flip_symmetric_amino_acids.py iotbx/command_line/french_wilson.py iotbx/command_line/get_pubmed_citation.py iotbx/command_line/lattice_symmetry.py iotbx/command_line/merging_statistics.py iotbx/command_line/mtrix_reconstruction.py iotbx/command_line/mtz.dump.py iotbx/command_line/mtz_as_cif.py iotbx/command_line/patterson_map.py iotbx/command_line/pdb.as_xray_structure.py iotbx/command_line/pdb.b_factor_stats.py iotbx/command_line/pdb.box_around_molecule.py iotbx/command_line/pdb.hierarchy.py iotbx/command_line/pdb.insert_scale_records.py iotbx/command_line/pdb.join_fragment_files.py iotbx/command_line/pdb.link_as_geometry_restraints_edits.py iotbx/command_line/pdb.print_sequence.py iotbx/command_line/pdb.superpose_atoms_by_name.py iotbx/command_line/pdb.superpose_centers_of_mass.py iotbx/command_line/pdb_add_conformations.py iotbx/command_line/pdb_as_cif.py iotbx/command_line/pdb_as_fasta.py iotbx/command_line/pdb_cif_conversion.py iotbx/command_line/pdb_get_citation.py iotbx/command_line/pdb_labels_comparison.py iotbx/command_line/pdb_labels_diff.py iotbx/command_line/pdb_remediator.py iotbx/command_line/pdb_show_connectivity.py iotbx/command_line/pdb_split_models.py iotbx/command_line/phil.py iotbx/command_line/poscar_as_xray_structure.py iotbx/command_line/r_free_flags_accumulation.py iotbx/command_line/r_free_flags_as_cns.py iotbx/command_line/r_free_flags_completion_simple.py iotbx/command_line/reflection_file_converter.py iotbx/command_line/reflection_file_editor.py iotbx/command_line/reflection_file_reader.py iotbx/command_line/reflection_statistics.py iotbx/command_line/reindex.py iotbx/command_line/shelx.as_cif.py iotbx/command_line/shelx.as_xray_structure.py iotbx/command_line/shelx.dump_as_python.py iotbx/command_line/show_distances.py iotbx/command_line/show_systematic_absences.py iotbx/command_line/simple_map_coefficients.py iotbx/command_line/sort_atoms.py iotbx/command_line/split_data_cif.py iotbx/command_line/symmetry_search.py iotbx/command_line/unique_with_biomt.py iotbx/command_line/xplor.map.show_summary.py sent 252,604 bytes received 1,428 bytes 508,064.00 bytes/sec total size is 246,561 speedup is 0.97 building file list ... done libtbx/ libtbx/command_line/ libtbx/command_line/__init__.py libtbx/command_line/add_docstrings_with_ai.py libtbx/command_line/analyse_code_comments.py libtbx/command_line/any2unix.py libtbx/command_line/assert_line_count.py libtbx/command_line/assert_not_show_diff.py libtbx/command_line/assert_stdin.py libtbx/command_line/assert_stdin_contains_strings.py libtbx/command_line/assert_stdin_ends_with.py libtbx/command_line/bash.sh libtbx/command_line/bibtex.sh libtbx/command_line/bootstrap.py libtbx/command_line/bundle_as_exe.py libtbx/command_line/bundle_as_selfx.csh libtbx/command_line/cctbx_chunk.py libtbx/command_line/check_libcpp.py libtbx/command_line/clean_clutter.py libtbx/command_line/clear_paths.py libtbx/command_line/configure.bat libtbx/command_line/configure.sh libtbx/command_line/create_cctbx_bundle_for_installer.py libtbx/command_line/create_install_script_bat.py libtbx/command_line/create_installer.py libtbx/command_line/create_mac_app.py libtbx/command_line/create_selfx.py libtbx/command_line/create_unzipsfx.py libtbx/command_line/create_windows_exe.py libtbx/command_line/csh.sh libtbx/command_line/dtrace.py libtbx/command_line/easy_qsub.py libtbx/command_line/env_run.py libtbx/command_line/epydoc_run.py libtbx/command_line/exec.sh libtbx/command_line/extract_code_from_txt.py libtbx/command_line/find_clutter.py libtbx/command_line/find_files.py libtbx/command_line/find_in_repositories.py libtbx/command_line/find_old_style_classes.py libtbx/command_line/find_pdb_mmcif_problems.py libtbx/command_line/find_reserved_names.py libtbx/command_line/find_under_build.py libtbx/command_line/find_untested.py libtbx/command_line/find_unused_imports.py libtbx/command_line/find_unused_imports_crude.py libtbx/command_line/gdb.sh libtbx/command_line/git_avoid_merges.py libtbx/command_line/help.py libtbx/command_line/import_all_ext.py libtbx/command_line/import_all_python.py libtbx/command_line/install.py libtbx/command_line/install_conda.py libtbx/command_line/ipython_shell_start.py libtbx/command_line/latex.sh libtbx/command_line/line_count.py libtbx/command_line/list_files.py libtbx/command_line/list_modules.py libtbx/command_line/list_source_files_sorted_by_size.py libtbx/command_line/make_dist.py libtbx/command_line/make_sphinx_html.py libtbx/command_line/nequal.py libtbx/command_line/parallel_simple.py libtbx/command_line/path_utility.py libtbx/command_line/pdflatex.sh libtbx/command_line/phil.py libtbx/command_line/prime_factors_of.py libtbx/command_line/printenv.py libtbx/command_line/py_compile_all.py libtbx/command_line/raise_exception_for_testing.py libtbx/command_line/refresh.bat libtbx/command_line/refresh.sh libtbx/command_line/reindent.py libtbx/command_line/remote_processing.py libtbx/command_line/remove_tree.py libtbx/command_line/remove_unused_imports.py libtbx/command_line/resource_monitor_plot.py libtbx/command_line/run_pickled_function.py libtbx/command_line/run_tests_parallel.py libtbx/command_line/scons.py libtbx/command_line/seconds_since_the_epoch.py libtbx/command_line/sge_available_slots.py libtbx/command_line/sge_qstat_counts.py libtbx/command_line/sh.sh libtbx/command_line/show_all_on_path.py libtbx/command_line/show_bin_path.py libtbx/command_line/show_build_options.py libtbx/command_line/show_build_path.py libtbx/command_line/show_but_no_repr.py libtbx/command_line/show_commands.py libtbx/command_line/show_date_and_time.py libtbx/command_line/show_dist_paths.py libtbx/command_line/show_env.py libtbx/command_line/show_environ_usage.py libtbx/command_line/show_full_command_path.py libtbx/command_line/show_host_and_user.py libtbx/command_line/show_include_paths.py libtbx/command_line/show_lib_path.py libtbx/command_line/show_module_dependencies.py libtbx/command_line/show_number_of_processors.py libtbx/command_line/show_numeric_version.py libtbx/command_line/show_numpy_version.py libtbx/command_line/show_python_dependencies.py libtbx/command_line/show_python_sys_executable.py libtbx/command_line/show_pythonpath.py libtbx/command_line/show_repository_paths.py libtbx/command_line/show_tests.py libtbx/command_line/show_variable_names.py libtbx/command_line/sphinx_build.py libtbx/command_line/start_binary_bundle.py libtbx/command_line/start_process.py libtbx/command_line/tcsh.sh libtbx/command_line/unpack_in_sources.csh libtbx/command_line/valgrind.sh libtbx/command_line/wait_for_file.py sent 229,744 bytes received 2,169 bytes 154,608.67 bytes/sec total size is 220,704 speedup is 0.95 building file list ... done mmtbx/ mmtbx/command_line/ mmtbx/command_line/__init__.py mmtbx/command_line/altloc_remediate.py mmtbx/command_line/angle.py mmtbx/command_line/apply_ncs_to_ligand.py mmtbx/command_line/arginine_geometry.py mmtbx/command_line/atom_valence_simple.py mmtbx/command_line/barbed_wire_analysis.py mmtbx/command_line/cablam.py mmtbx/command_line/cablam_idealization.py mmtbx/command_line/cbetadev.py mmtbx/command_line/cc_star.py mmtbx/command_line/chiral_validation.py mmtbx/command_line/cif_as_mtz.py mmtbx/command_line/clashscore.py mmtbx/command_line/clashscore2.py mmtbx/command_line/comparama.py mmtbx/command_line/debug_riding.py mmtbx/command_line/density_modification.py mmtbx/command_line/development_aev.py mmtbx/command_line/development_fem.py mmtbx/command_line/distance_difference.py mmtbx/command_line/dynamics.py mmtbx/command_line/electrons.py mmtbx/command_line/emringer.py mmtbx/command_line/emringer_score.py mmtbx/command_line/estimate_bijvoet_ratio.py mmtbx/command_line/f000.py mmtbx/command_line/fab_elbow_angle.py mmtbx/command_line/fake_f_obs.py mmtbx/command_line/fetch_pdb.py mmtbx/command_line/find_peaks_holes.py mmtbx/command_line/find_residue_in_pdb.py mmtbx/command_line/find_tls_groups.py mmtbx/command_line/fmodel.py mmtbx/command_line/fobs_minus_fobs_map.py mmtbx/command_line/geometry_minimization.py mmtbx/command_line/grow_density.py mmtbx/command_line/hbond.py mmtbx/command_line/helix_sheet_recs_as_pdb_files.py mmtbx/command_line/holton_geometry_validation.py mmtbx/command_line/hydrogenate.py mmtbx/command_line/kinemage.py mmtbx/command_line/ligand_restraints_validation.py mmtbx/command_line/map_box.py mmtbx/command_line/map_comparison.py mmtbx/command_line/map_to_model_histogram.py mmtbx/command_line/map_to_structure_factors.py mmtbx/command_line/maps.py mmtbx/command_line/mask.py mmtbx/command_line/massage_data.py mmtbx/command_line/matthews.py mmtbx/command_line/maximum_entropy_map.py mmtbx/command_line/model_idealization.py mmtbx/command_line/model_map.py mmtbx/command_line/model_model_distances.py mmtbx/command_line/model_vs_data.py mmtbx/command_line/model_vs_map.py mmtbx/command_line/model_vs_sequence.py mmtbx/command_line/models_as_chains.py mmtbx/command_line/molprobity.py mmtbx/command_line/mon_lib_cif_triage.py mmtbx/command_line/mp_geo.py mmtbx/command_line/mp_validate_bonds.py mmtbx/command_line/mtz2map.py mmtbx/command_line/next_gen_atom_typing.py mmtbx/command_line/nonbonded_overlaps.py mmtbx/command_line/omegalyze.py mmtbx/command_line/pdb_atom_selection.py mmtbx/command_line/pdb_interpretation.py mmtbx/command_line/pdbtools.py mmtbx/command_line/perigee.py mmtbx/command_line/plan_sad_experiment.py mmtbx/command_line/polder.py mmtbx/command_line/prepare_pdb_deposition.py mmtbx/command_line/probe2.py mmtbx/command_line/probescore_ligand.py mmtbx/command_line/process_predicted_model.py mmtbx/command_line/prune_model.py mmtbx/command_line/quantum_interface.py mmtbx/command_line/r_factor_statistics.py mmtbx/command_line/rama_z.py mmtbx/command_line/ramalyze.py mmtbx/command_line/rank_scale_map.py mmtbx/command_line/real_space_correlation.py mmtbx/command_line/real_space_diff_map.py mmtbx/command_line/rebuild_cablam_cache.py mmtbx/command_line/rebuild_rotarama_cache.py mmtbx/command_line/reciprocal_space_arrays.py mmtbx/command_line/reduce2.py mmtbx/command_line/reduce_cryoem_resolution.py mmtbx/command_line/refine_anomalous_substructure.py mmtbx/command_line/remove_outliers.py mmtbx/command_line/ribbons.py mmtbx/command_line/rigid_bond_test.py mmtbx/command_line/ringer.py mmtbx/command_line/rna_validate.py mmtbx/command_line/rna_validate_bonds.py mmtbx/command_line/rna_validate_puckers.py mmtbx/command_line/rna_validate_suites.py mmtbx/command_line/rotalyze.py mmtbx/command_line/search_pdb_symmetry.py mmtbx/command_line/secondary_structure_restraints.py mmtbx/command_line/secondary_structure_validation.py mmtbx/command_line/select_best_starting_model.py mmtbx/command_line/show_r_factors_by_shell.py mmtbx/command_line/sisa.py mmtbx/command_line/sort_hetatms.py mmtbx/command_line/ss_idealization.py mmtbx/command_line/suitename.py mmtbx/command_line/suitename_old.py mmtbx/command_line/super.py mmtbx/command_line/superpose.py mmtbx/command_line/taam_minus_iam.py mmtbx/command_line/table_one.py mmtbx/command_line/tls.py mmtbx/command_line/tls_analysis.py mmtbx/command_line/tls_as_xyz.py mmtbx/command_line/undowser.py mmtbx/command_line/undowser2.py mmtbx/command_line/validate_H_cl_app.py mmtbx/command_line/validate_ligands.py mmtbx/command_line/validation_summary.py mmtbx/command_line/verify_mon_lib_data.py mmtbx/command_line/water_b_factors.py mmtbx/command_line/where_is_that_cif_file.py mmtbx/command_line/xmanip.py mmtbx/command_line/xtrapol8.py mmtbx/command_line/xtriage.py mmtbx/regression/ mmtbx/regression/command_line/ mmtbx/regression/command_line/tst_find_residue_in_pdb.py sent 727,869 bytes received 2,479 bytes 486,898.67 bytes/sec total size is 717,429 speedup is 0.98 building file list ... done sent 70 bytes received 12 bytes 164.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done rstbx/ rstbx/command_line/ rstbx/command_line/__init__.py rstbx/command_line/example_viewer.py rstbx/command_line/index.py rstbx/command_line/simage.create.py rstbx/command_line/simage.explore_completeness.py rstbx/command_line/simage.solver.py rstbx/command_line/simage.wx_display.py rstbx/command_line/slip_viewer.py rstbx/command_line/viewer.py sent 12,285 bytes received 193 bytes 8,318.67 bytes/sec total size is 11,139 speedup is 0.89 building file list ... done scitbx/ scitbx/command_line/ scitbx/command_line/__init__.py scitbx/command_line/apply_tapenade_hints.py scitbx/command_line/generate_error_h.py scitbx/command_line/histogram.py scitbx/command_line/show_exp_times.py scitbx/command_line/show_sizes.py scitbx/command_line/unicode_examples.py sent 11,852 bytes received 155 bytes 8,004.67 bytes/sec total size is 10,021 speedup is 0.83 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/command_line/ smtbx/command_line/__init__.py smtbx/command_line/absolute_structure.py smtbx/command_line/anom_refine.py smtbx/command_line/benchmark_refinement.py smtbx/command_line/masks.py smtbx/command_line/refine.py sent 38,577 bytes received 136 bytes 25,808.67 bytes/sec total size is 37,436 speedup is 0.97 building file list ... done spotfinder/ spotfinder/command_line/ spotfinder/command_line/__init__.py spotfinder/command_line/find_active_area.py spotfinder/command_line/image_viewer.py spotfinder/command_line/mp_spotfinder_server_read_file.py spotfinder/command_line/signal_strength.py spotfinder/command_line/sweep_strength.py spotfinder/command_line/thin_client.py sent 23,567 bytes received 155 bytes 15,814.67 bytes/sec total size is 22,750 speedup is 0.96 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done wxtbx/ wxtbx/command_line/ wxtbx/command_line/__init__.py wxtbx/command_line/anomalous_differences_histogram.py wxtbx/command_line/b_plot.py wxtbx/command_line/inspect_r_free_flags.py wxtbx/command_line/loggraph.py wxtbx/command_line/pdb_editor.py wxtbx/command_line/pdb_statistics.py wxtbx/command_line/plan_sad_experiment.py wxtbx/command_line/plot_anomalous_scattering.py wxtbx/command_line/show_file_info.py wxtbx/command_line/wxpython.py wxtbx/command_line/xtriage.py sent 17,088 bytes received 250 bytes 34,676.00 bytes/sec total size is 16,108 speedup is 0.93 building file list ... done sent 242 bytes received 12 bytes 508.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/graph/ boost_adaptbx/graph/tests/ boost_adaptbx/graph/tests/tst_graph.py boost_adaptbx/graph/tests/tst_graph_breadth_first_search.py boost_adaptbx/graph/tests/tst_graph_clustering_algorithm.py boost_adaptbx/graph/tests/tst_graph_connected_component_algorithm.py boost_adaptbx/graph/tests/tst_graph_graph_structure_comparison.py boost_adaptbx/graph/tests/tst_graph_maximum_clique.py boost_adaptbx/graph/tests/tst_graph_metric.py boost_adaptbx/graph/tests/tst_graph_min_cut_max_flow.py boost_adaptbx/graph/tests/tst_graph_minimum_cut_enumerate.py boost_adaptbx/graph/tests/tst_graph_utility.py boost_adaptbx/tests/ boost_adaptbx/tests/tst_boost_thread.py boost_adaptbx/tests/tst_char_array.py boost_adaptbx/tests/tst_deprecation_tools.py boost_adaptbx/tests/tst_libc_backtrace.py boost_adaptbx/tests/tst_optional.py boost_adaptbx/tests/tst_optional_copy.cpp boost_adaptbx/tests/tst_optional_copy.h boost_adaptbx/tests/tst_python_streambuf.py boost_adaptbx/tests/tst_rational.py boost_adaptbx/tests/tst_std_pair.py boost_adaptbx/tests/tst_stderr_stdout.py boost_adaptbx/tests/tst_stdin.py boost_adaptbx/tests/tst_stdout.py boost_adaptbx/tests/tst_string_representation.py boost_adaptbx/tests/tst_swig_args.py boost_adaptbx/tests/tst_tuple.py sent 91,617 bytes received 515 bytes 184,264.00 bytes/sec total size is 89,629 speedup is 0.97 building file list ... done cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/tst_memory.cpp sent 1,198 bytes received 34 bytes 2,464.00 bytes/sec total size is 967 speedup is 0.78 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/tst.py ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/tst_fftlib.py sent 9,496 bytes received 60 bytes 6,370.67 bytes/sec total size is 9,204 speedup is 0.96 building file list ... done cctbx/adp_restraints/ cctbx/adp_restraints/tst_ext.py cctbx/adptbx/ cctbx/adptbx/boost_python/ cctbx/adptbx/boost_python/tst_adptbx.py cctbx/adptbx/boost_python/tst_hirshfeld.py cctbx/array_family/ cctbx/array_family/boost_python/ cctbx/array_family/boost_python/tst_flex.py cctbx/covariance/ cctbx/covariance/tests/ cctbx/covariance/tests/tst_covariance.py cctbx/crystal/ cctbx/crystal/tst_distance_based_connectivity.py cctbx/crystal/tst_ext.py cctbx/crystal/tst_super_cell.py cctbx/development/ cctbx/development/tst_cns_epsilon.py cctbx/development/tst_cns_hl.py cctbx/dispersion/ cctbx/dispersion/tests/ cctbx/dispersion/tests/tst_kramers_kronig.py cctbx/dispersion/tests/tst_kramers_kronig_helper.py cctbx/dispersion/tests/tst_kramers_kronig_optimize.py cctbx/dmtbx/ cctbx/dmtbx/boost_python/ cctbx/dmtbx/boost_python/tst_dmtbx.py cctbx/eltbx/ cctbx/eltbx/tests/ cctbx/eltbx/tests/tst_attenuation_coefficient.py cctbx/eltbx/tests/tst_chemical_elements.py cctbx/eltbx/tests/tst_covalent_radii.py cctbx/eltbx/tests/tst_formula.py cctbx/eltbx/tests/tst_henke.py cctbx/eltbx/tests/tst_icsd_radii.py cctbx/eltbx/tests/tst_neutron.py cctbx/eltbx/tests/tst_sasaki.py cctbx/eltbx/tests/tst_tiny_pse.py cctbx/eltbx/tests/tst_wavelengths.py cctbx/eltbx/tests/tst_xray_scattering.py cctbx/examples/ cctbx/examples/tst_exp_i_alpha_derivatives.py cctbx/examples/tst_g_exp_i_alpha_derivatives.py cctbx/examples/tst_phase_o_phrenia.py cctbx/examples/tst_space_subgroups.py cctbx/examples/tst_structure_factor_derivatives.py cctbx/examples/tst_structure_factor_derivatives_2.py cctbx/examples/tst_structure_factor_derivatives_3.py cctbx/examples/tst_structure_factor_derivatives_4.py cctbx/examples/merging/ cctbx/examples/merging/tst_permutations.py cctbx/geometry/ cctbx/geometry/tests/ cctbx/geometry/tests/tst_geometry.py cctbx/geometry_restraints/ cctbx/geometry_restraints/tst_angle_derivs.py cctbx/geometry_restraints/tst_ext.py cctbx/geometry_restraints/tst_motif.py cctbx/geometry_restraints/tst_process_nonbonded_proxies.py cctbx/geometry_restraints/tst_proxy_registry.py cctbx/maptbx/ cctbx/maptbx/tst_asymmetric_map.py cctbx/maptbx/tst_atom_curves.py cctbx/maptbx/tst_atom_radius_as_central_peak_width.py cctbx/maptbx/tst_bcr.py cctbx/maptbx/tst_ccp.py cctbx/maptbx/tst_get_percentile_cutoffs.py cctbx/maptbx/tst_interpolation.py cctbx/maptbx/tst_interpolation_2.py cctbx/maptbx/tst_loft.py cctbx/maptbx/tst_map_peak_3d_as_2d.py cctbx/maptbx/tst_mask.py cctbx/maptbx/tst_peak_volume_estimate.py cctbx/maptbx/tst_qscore.py cctbx/maptbx/tst_real_space_refinement_simple.py cctbx/maptbx/tst_resolution_from_map_and_model.py cctbx/maptbx/tst_target_and_gradients.py cctbx/maptbx/bcr/ cctbx/maptbx/bcr/tst_adp_refine.py cctbx/maptbx/bcr/tst_example.py cctbx/maptbx/bcr/tst_qmap_02.py cctbx/maptbx/bcr/tst_table.py cctbx/maptbx/bcr/tst_two_atoms.py cctbx/maptbx/bcr/tst_vrm.py cctbx/maptbx/bcr/tst_vrm2.py cctbx/maptbx/boost_python/ cctbx/maptbx/boost_python/tst_maptbx.py cctbx/masks/ cctbx/masks/tests/ cctbx/masks/tests/tst_flood_fill.py cctbx/math/ cctbx/math/boost_python/ cctbx/math/boost_python/tst_math.py cctbx/miller/ cctbx/miller/tst_map_to_asu_isym.py cctbx/miller/tst_reindexing.py cctbx/miller/boost_python/ cctbx/miller/boost_python/tst_miller.py cctbx/multipolar/ cctbx/multipolar/regression/ cctbx/multipolar/regression/tst_multipolar.py cctbx/omz/ cctbx/omz/tst_bfgs.py cctbx/omz/tst_cod.csh cctbx/omz/tst_dev.py cctbx/regression/ cctbx/regression/tst_adp_aniso_restraints.py cctbx/regression/tst_adp_constraints.py cctbx/regression/tst_adp_constraints_cartesian.py cctbx/regression/tst_amplitude_normalisation.py cctbx/regression/tst_change_basis.py cctbx/regression/tst_connectivity.py cctbx/regression/tst_connectivity_allsym.py cctbx/regression/tst_coordination_sequences.py cctbx/regression/tst_create_models_or_maps.py cctbx/regression/tst_crystal.py cctbx/regression/tst_crystal_asu_clusters.py cctbx/regression/tst_crystal_close_packing.py cctbx/regression/tst_diffuse.py cctbx/regression/tst_direct_scaling.py cctbx/regression/tst_direct_space_asu.py cctbx/regression/tst_emma.py cctbx/regression/tst_expand_to_p1.py cctbx/regression/tst_f_model.py cctbx/regression/tst_fast_nv1995.py cctbx/regression/tst_fcalc_fft_stability.py cctbx/regression/tst_find_best_cell.py cctbx/regression/tst_fourier_transform_real_part_at_x.py cctbx/regression/tst_french_wilson.py cctbx/regression/tst_geometry_restraints.py cctbx/regression/tst_geometry_restraints_2.py cctbx/regression/tst_geometry_restraints_lbfgs.py cctbx/regression/tst_grm_modifications.py cctbx/regression/tst_grm_modifications_rm.py cctbx/regression/tst_grm_pickling.py cctbx/regression/tst_grouped_data.py cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py cctbx/regression/tst_krivy_gruber.py cctbx/regression/tst_loc_res.py cctbx/regression/tst_map_is_periodic.py cctbx/regression/tst_map_weights_for_symmetry_summation.py cctbx/regression/tst_maptbx_box.py cctbx/regression/tst_maptbx_mask.py cctbx/regression/tst_maptbx_structure_factors.py cctbx/regression/tst_math_module.py cctbx/regression/tst_mem.py cctbx/regression/tst_mem_2.py cctbx/regression/tst_miller.py cctbx/regression/tst_miller_data_manipulation.py cctbx/regression/tst_miller_double_step_filtration.py cctbx/regression/tst_miller_fft_map.py cctbx/regression/tst_miller_lookup_utils.py cctbx/regression/tst_miller_merge_equivalents.py cctbx/regression/tst_miller_statistics.py cctbx/regression/tst_niggli_reduction_cpp.py cctbx/regression/tst_pair_asu_table.py cctbx/regression/tst_pointgroup_tools.py cctbx/regression/tst_prepare_map_for_docking.py cctbx/regression/tst_r_free_utils.py cctbx/regression/tst_reciprocal_space_asu.py cctbx/regression/tst_refine_xray_curvs.py cctbx/regression/tst_reflection_statistics.py cctbx/regression/tst_sampled_model_density.py cctbx/regression/tst_sf_low_res_accuracy.py cctbx/regression/tst_sgtbx.py cctbx/regression/tst_sgtbx_denominators.py cctbx/regression/tst_sgtbx_harker.py cctbx/regression/tst_sgtbx_lattice_symmetry.py cctbx/regression/tst_sgtbx_site_constraints.py cctbx/regression/tst_sgtbx_special_op_simplifier.py cctbx/regression/tst_sgtbx_subgroups.py cctbx/regression/tst_sgtbx_tidy_pickling.py cctbx/regression/tst_show_cosets.py cctbx/regression/tst_space_group_type_tidy_cb_op_t.py cctbx/regression/tst_sphericity.py cctbx/regression/tst_statistics_graphs.py cctbx/regression/tst_triplet_generator.py cctbx/regression/tst_twin_target.py cctbx/regression/tst_wavelength_units.py cctbx/regression/tst_web_change_basis.py cctbx/regression/tst_weighting_schemes.py cctbx/regression/tst_wilson_plot.py cctbx/regression/tst_xray.py cctbx/regression/tst_xray_derivatives.py cctbx/regression/tst_xray_fast_gradients.py cctbx/regression/tst_xray_minimization.py cctbx/regression/tst_xray_minimization_failure.py cctbx/regression/tst_xray_target_functors.py cctbx/sgtbx/ cctbx/sgtbx/boost_python/ cctbx/sgtbx/boost_python/tst_N_fold_rot.py cctbx/sgtbx/boost_python/tst_sgtbx.py cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cctbx/sgtbx/direct_space_asu/proto/tst_asu.py cctbx/symmetry_search/ cctbx/symmetry_search/tests/ cctbx/symmetry_search/tests/tst_from_map.py cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py cctbx/translation_search/ cctbx/translation_search/boost_python/ cctbx/translation_search/boost_python/tst_translation_search.py cctbx/uctbx/ cctbx/uctbx/boost_python/ cctbx/uctbx/boost_python/tst_crystal_orientation.py cctbx/uctbx/boost_python/tst_uctbx.py cctbx/uctbx/lrl/ cctbx/uctbx/lrl/tst_match_lattices.py cctbx/xray/ cctbx/xray/boost_python/ cctbx/xray/boost_python/tst_f_model.py cctbx/xray/boost_python/tst_targets_fd.py cctbx/xray/boost_python/tst_xray.py cctbx/xray/observations/ cctbx/xray/observations/tst_observations.py cctbx/xray/targets/ cctbx/xray/targets/tst_r1.py cctbx/xray/targets/tst_shelxl_wght_ls.py sent 2,096,880 bytes received 3,409 bytes 381,870.73 bytes/sec total size is 2,082,707 speedup is 0.99 building file list ... done cma_es/ cma_es/tst_cma_es.py sent 3,163 bytes received 38 bytes 2,134.00 bytes/sec total size is 3,008 speedup is 0.94 building file list ... done crys3d/regression/ crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py crys3d/regression/tst_hklinfo.py crys3d/regression/tst_websocket.py sent 42,501 bytes received 129 bytes 85,260.00 bytes/sec total size is 41,869 speedup is 0.98 building file list ... done sent 595 bytes received 12 bytes 1,214.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done fable/tst_cout.py fable/tst_cout_compile.py fable/tst_equivalence.py fable/tst_ext.py fable/tst_read.py fable/test/ fable/test/tst_command_line.py fable/test/tst_io.py fable/test/tst_separate_files.py fable/test/tst_show_calls.py sent 152,770 bytes received 186 bytes 101,970.67 bytes/sec total size is 151,869 speedup is 0.99 building file list ... done gltbx/tst.py gltbx/tst_ellipsoids.py gltbx/tst_fonts.py gltbx/tst_viewer_utils.py sent 8,480 bytes received 88 bytes 17,136.00 bytes/sec total size is 8,108 speedup is 0.95 building file list ... done iotbx/bioinformatics/ iotbx/bioinformatics/test/ iotbx/bioinformatics/test/tst_alignment_as_hsearch.py iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py iotbx/bioinformatics/test/tst_local_blast.py iotbx/bioinformatics/test/tst_ncbi_blast_xml.py iotbx/ccp4_map/ iotbx/ccp4_map/tst.py iotbx/ccp4_map/tst_input.map iotbx/cif/ iotbx/cif/tests/ iotbx/cif/tests/tst_citations.py iotbx/cif/tests/tst_cod.py iotbx/cif/tests/tst_crystal_symmetry_builder.py iotbx/cif/tests/tst_geometry.py iotbx/cif/tests/tst_lex_parse_build.py iotbx/cif/tests/tst_model.py iotbx/cif/tests/tst_model_builder.py iotbx/cif/tests/tst_parser.py iotbx/cif/tests/tst_restraints.py iotbx/cif/tests/tst_ucif_examples_compilation.py iotbx/cif/tests/tst_validation.py iotbx/cns/ iotbx/cns/tst_cns.py iotbx/detectors/ iotbx/detectors/tst_adsc.py iotbx/detectors/tst_cbf_comp_read_meth.py iotbx/detectors/tst_debug_write.py iotbx/detectors/tst_detectors.py iotbx/detectors/tst_py_cbf.py iotbx/dsn6/ iotbx/dsn6/tst.py iotbx/examples/ iotbx/examples/tst_mtz_free_flipper.py iotbx/examples/pdb_truncate_to_ala/ iotbx/examples/pdb_truncate_to_ala/tst.py iotbx/gui_tools/ iotbx/gui_tools/tst.py iotbx/kriber/ iotbx/kriber/tst_strudat.py iotbx/mtz/ iotbx/mtz/tst.py iotbx/mtz/tst_dano.py iotbx/mtz/tst_ext.py iotbx/mtz/tst_extract_from_symmetry_lib.py iotbx/mtz/tst_miller_dict.py iotbx/mtz/tst_unmerged.py iotbx/pdb/ iotbx/pdb/tst_atom_name_interpretation.py iotbx/pdb/tst_atom_selection.py iotbx/pdb/tst_atom_selection_string.py iotbx/pdb/tst_ext.py iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py iotbx/pdb/tst_hierarchy.py iotbx/pdb/tst_hierarchy_atom_sort.py iotbx/pdb/tst_hierarchy_flip_symmetric.py iotbx/pdb/tst_hierarchy_flip_symmetric_2.py iotbx/pdb/tst_mmcif.py iotbx/pdb/tst_mmcif_hierarchy.py iotbx/pdb/tst_mmcif_hierarchy_2.py iotbx/pdb/tst_pdb.py iotbx/pdb/tst_read_mtrix_records_from_cif.py iotbx/pdb/tst_rna_dna_atom_names.py iotbx/pdb/tst_secondary_structure.py iotbx/pdb/tst_secondary_structure_2.py iotbx/pdb/tst_tls.py iotbx/pdb/tst_utils.py iotbx/pdb/remediation/ iotbx/pdb/remediation/tst_remediator.py iotbx/regression/ iotbx/regression/tst_add_conformations.py iotbx/regression/tst_all_chain_ids.py iotbx/regression/tst_atom_selections_10k.py iotbx/regression/tst_bioinformatics.py iotbx/regression/tst_box_around_molecule.py iotbx/regression/tst_cif_1.py iotbx/regression/tst_cif_as_pdb_1atom.py iotbx/regression/tst_cli_parser.py iotbx/regression/tst_crystal_symmetry_from_any.py iotbx/regression/tst_csv_utils.py iotbx/regression/tst_data_manager.py iotbx/regression/tst_data_plots.py iotbx/regression/tst_examples.py iotbx/regression/tst_export_scalepack_unmerged.py iotbx/regression/tst_extract_xtal_data.py iotbx/regression/tst_fetch.py iotbx/regression/tst_file_reader.py iotbx/regression/tst_generate_n_char_string.py iotbx/regression/tst_group_rounding.py iotbx/regression/tst_hierarchy_altlocs.py iotbx/regression/tst_hierarchy_copy_select.py iotbx/regression/tst_hierarchy_forward_compatible_pdb.py iotbx/regression/tst_hierarchy_id_str.py iotbx/regression/tst_hierarchy_long_chain_ids_1.py iotbx/regression/tst_hierarchy_long_resname_1.py iotbx/regression/tst_hierarchy_long_resname_2.py iotbx/regression/tst_hierarchy_long_resname_3.py iotbx/regression/tst_hierarchy_long_resname_4.py iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py iotbx/regression/tst_hierarchy_occupancies_rounding.py iotbx/regression/tst_hierarchy_pdb_v3.py iotbx/regression/tst_lattice_symmetry.py iotbx/regression/tst_map_manager.py iotbx/regression/tst_map_manager_2.py iotbx/regression/tst_map_manager_wrapping.py iotbx/regression/tst_map_model_manager.py iotbx/regression/tst_map_model_manager_2.py iotbx/regression/tst_map_model_manager_3.py iotbx/regression/tst_map_model_manager_4.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py iotbx/regression/tst_map_model_manager_call_consistency.py iotbx/regression/tst_map_model_manager_cif.py iotbx/regression/tst_map_model_manager_external_sharpening_7.py iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py iotbx/regression/tst_map_model_manager_local_resolution_10.py iotbx/regression/tst_map_model_manager_model_sharpening_5.py iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py iotbx/regression/tst_map_model_manager_tls_from_map_8.py iotbx/regression/tst_map_tools.py iotbx/regression/tst_merging_statistics.py iotbx/regression/tst_miller_sort_asu.py iotbx/regression/tst_mmcif_input.py iotbx/regression/tst_mmcif_multimodel.py iotbx/regression/tst_mmcif_segids.py iotbx/regression/tst_mmcif_to_from_hierarchy.py iotbx/regression/tst_mrc_io.py iotbx/regression/tst_mtz_as_cif.py iotbx/regression/tst_patterson.py iotbx/regression/tst_pdb_as_cif.py iotbx/regression/tst_pdb_as_fasta.py iotbx/regression/tst_pdb_cif_cells.py iotbx/regression/tst_pdb_cif_inputs.py iotbx/regression/tst_pdb_link_records.py iotbx/regression/tst_pdbx_mmcif_tutorial.py iotbx/regression/tst_phases.py iotbx/regression/tst_phil.py iotbx/regression/tst_poscar.py iotbx/regression/tst_reflection_file_editor.py iotbx/regression/tst_reflection_file_reader.py iotbx/regression/tst_reflection_file_utils.py iotbx/regression/tst_reflection_statistics.py iotbx/regression/tst_reindex.py iotbx/regression/tst_restraints_merge.py iotbx/regression/tst_selected_hierarchy_flip.py iotbx/regression/tst_show_systematic_absences.py iotbx/regression/tst_simple_map_coefficients.py iotbx/regression/tst_simple_parser.py iotbx/regression/tst_sort_atoms.py iotbx/regression/tst_split_data_cif.py iotbx/regression/tst_split_models.py iotbx/regression/tst_symmetry.py iotbx/regression/tst_wildcard.py iotbx/regression/tst_xray_scale.py iotbx/regression/ncs/ iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py iotbx/regression/ncs/tst_ncs.py iotbx/regression/ncs/tst_ncs_groups_preprocessing.py iotbx/regression/ncs/tst_ncs_input.py iotbx/regression/ncs/tst_ncs_reordered_chains.py iotbx/regression/ncs/tst_ncs_search_broken_chain.py iotbx/regression/ncs/tst_ncs_search_ligs.py iotbx/regression/ncs/tst_ncs_search_shortcut_1.py iotbx/regression/ncs/tst_ncs_user_selections.py iotbx/regression/ncs/tst_ncs_without_validation.py iotbx/regression/secondary_structure/ iotbx/regression/secondary_structure/tst_annotation.py iotbx/regression/secondary_structure/tst_annotation_long.py iotbx/regression/secondary_structure/tst_sheet.py iotbx/scalepack/ iotbx/scalepack/tst_merge.py iotbx/scalepack/tst_no_merge_original_index.py iotbx/shelx/ iotbx/shelx/tst_fvar_encoding.py iotbx/shelx/tst_hklf.py iotbx/shelx/tst_lex_parse_build.py iotbx/shelx/tst_writer.py iotbx/xds/ iotbx/xds/tests/ iotbx/xds/tests/tst_integrate_hkl.py iotbx/xds/tests/tst_spots_xds.py iotbx/xds/tests/tst_xds_inp.py iotbx/xds/tests/tst_xparm.py iotbx/xplor/ iotbx/xplor/tst_xplormap.py sent 2,505,483 bytes received 3,182 bytes 716,761.43 bytes/sec total size is 2,492,940 speedup is 0.99 building file list ... done libtbx/tst_add_docstrings_with_ai.py libtbx/tst_binary_search.py libtbx/tst_citations.py libtbx/tst_containers.py libtbx/tst_dlite.py libtbx/tst_easy_mp.py libtbx/tst_easy_mp_multicore.py libtbx/tst_easy_mp_state.py libtbx/tst_easy_pickle.py libtbx/tst_find_unused_imports.py libtbx/tst_fully_buffered_timeout.py libtbx/tst_mahalanobis.py libtbx/tst_math_utils.py libtbx/tst_object_oriented_patterns.py libtbx/tst_path.py libtbx/tst_program_template.py libtbx/tst_python_code_parsing.py libtbx/tst_representation.py libtbx/tst_run_tests_parallel_retry.py libtbx/tst_run_tests_parallel_unique_dirs.py libtbx/tst_runtime_utils.py libtbx/tst_scheduling.py libtbx/tst_str_utils.py libtbx/tst_thread_utils.py libtbx/tst_topological_sort.py libtbx/tst_utils.py libtbx/tst_version.py libtbx/tst_word_index_generator.py libtbx/tst_xmlrpc_utils.py libtbx/langchain/ libtbx/langchain/agent/ libtbx/langchain/agent/tst_agent_enhancements.py libtbx/langchain/tests/ libtbx/langchain/tests/tst_abort_message_all_stops.py libtbx/langchain/tests/tst_action_item_1.py libtbx/langchain/tests/tst_advice_preprocessing.py libtbx/langchain/tests/tst_api_schema.py libtbx/langchain/tests/tst_audit_fixes.py libtbx/langchain/tests/tst_autosol_bugs.py libtbx/langchain/tests/tst_backward_compat.py libtbx/langchain/tests/tst_best_files_tracker.py libtbx/langchain/tests/tst_command_builder.py libtbx/langchain/tests/tst_contract_compliance.py libtbx/langchain/tests/tst_copies_tracking.py libtbx/langchain/tests/tst_decision_flow.py libtbx/langchain/tests/tst_diagnosed_failure_stop.py libtbx/langchain/tests/tst_directive_extractor.py libtbx/langchain/tests/tst_directive_validator.py libtbx/langchain/tests/tst_directives_integration.py libtbx/langchain/tests/tst_display_data_model.py libtbx/langchain/tests/tst_docs_tools.py libtbx/langchain/tests/tst_dry_run.py libtbx/langchain/tests/tst_error_analyzer.py libtbx/langchain/tests/tst_error_classifier.py libtbx/langchain/tests/tst_event_formatter_file_categories.py libtbx/langchain/tests/tst_event_system.py libtbx/langchain/tests/tst_explanation_prompts.py libtbx/langchain/tests/tst_fabricated_stop_condition.py libtbx/langchain/tests/tst_file_categorization.py libtbx/langchain/tests/tst_file_utils.py libtbx/langchain/tests/tst_fix_verification.py libtbx/langchain/tests/tst_gate_evaluator.py libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py libtbx/langchain/tests/tst_hardcoded_cleanup.py libtbx/langchain/tests/tst_history_analysis.py libtbx/langchain/tests/tst_hypothesis_evaluator.py libtbx/langchain/tests/tst_integration.py libtbx/langchain/tests/tst_intent_classifier.py libtbx/langchain/tests/tst_langchain_tools.py libtbx/langchain/tests/tst_log_extractor.py libtbx/langchain/tests/tst_metric_patterns.py libtbx/langchain/tests/tst_metrics_analyzer.py libtbx/langchain/tests/tst_mtz_crosscheck.py libtbx/langchain/tests/tst_mtz_phases_session_blocking.py libtbx/langchain/tests/tst_n_bugs.py libtbx/langchain/tests/tst_new_programs.py libtbx/langchain/tests/tst_old_client_compat.py libtbx/langchain/tests/tst_pattern_manager.py libtbx/langchain/tests/tst_perceive_stop_checks.py libtbx/langchain/tests/tst_phase0_static_audit.py libtbx/langchain/tests/tst_phase1_contract_gaps.py libtbx/langchain/tests/tst_phase2_path_consistency.py libtbx/langchain/tests/tst_phase3_bug5.py libtbx/langchain/tests/tst_phase3_serialization_symmetry.py libtbx/langchain/tests/tst_phase4_history_flags.py libtbx/langchain/tests/tst_phase5_error_classification.py libtbx/langchain/tests/tst_phase6_category_consumer.py libtbx/langchain/tests/tst_phase7_routing_simulation.py libtbx/langchain/tests/tst_phase8_command_building.py libtbx/langchain/tests/tst_phase9_llm_perturbation.py libtbx/langchain/tests/tst_phaser_multimodel.py libtbx/langchain/tests/tst_phil_validation.py libtbx/langchain/tests/tst_plan_generator.py libtbx/langchain/tests/tst_plan_schema.py libtbx/langchain/tests/tst_program_registration.py libtbx/langchain/tests/tst_sanity_checker.py libtbx/langchain/tests/tst_scenario_tracer.py libtbx/langchain/tests/tst_session_directives.py libtbx/langchain/tests/tst_session_summary.py libtbx/langchain/tests/tst_session_tools.py libtbx/langchain/tests/tst_shared_code_imports.py libtbx/langchain/tests/tst_silent_stop_abort_messages.py libtbx/langchain/tests/tst_state_serialization.py libtbx/langchain/tests/tst_stop_condition_fix.py libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py libtbx/langchain/tests/tst_stop_reason_codes.py libtbx/langchain/tests/tst_stop_reason_prompt.py libtbx/langchain/tests/tst_strategy_memory.py libtbx/langchain/tests/tst_structure_model.py libtbx/langchain/tests/tst_summary_display.py libtbx/langchain/tests/tst_template.py libtbx/langchain/tests/tst_thinking_agent.py libtbx/langchain/tests/tst_thinking_defense.py libtbx/langchain/tests/tst_transport.py libtbx/langchain/tests/tst_utils.py libtbx/langchain/tests/tst_v112_13_fixes.py libtbx/langchain/tests/tst_validate_file_overrides.py libtbx/langchain/tests/tst_validation_history.py libtbx/langchain/tests/tst_workflow_complete_stop.py libtbx/langchain/tests/tst_workflow_state.py libtbx/langchain/tests/tst_yaml_config.py libtbx/langchain/tests/tst_yaml_tools.py libtbx/phil/ libtbx/phil/tst.py libtbx/phil/tst_experimental.py libtbx/phil/tst_interface.py libtbx/phil/tst_tokenizer.py libtbx/queuing_system_utils/ libtbx/queuing_system_utils/tst.py sent 2,442,750 bytes received 2,383 bytes 978,053.20 bytes/sec total size is 2,432,426 speedup is 0.99 building file list ... done mmtbx/atomic_environment_vectors/ mmtbx/atomic_environment_vectors/tst.py mmtbx/building/ mmtbx/building/tst_extend_sidechains.py mmtbx/building/tst_extend_sidechains_2.py mmtbx/building/ligands/ mmtbx/building/ligands/tst_00.py mmtbx/building/ligands/tst_00_mmtbx_building_ligands.map mmtbx/bulk_solvent/ mmtbx/bulk_solvent/tst_aniso_scaler.py mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py mmtbx/bulk_solvent/tst_flat_nonuniform.py mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py mmtbx/bulk_solvent/tst_mosaic.py mmtbx/bulk_solvent/tst_scaler.py mmtbx/chemical_components/ mmtbx/chemical_components/tst.py mmtbx/conformation_dependent_library/ mmtbx/conformation_dependent_library/tst_cdl.py mmtbx/conformation_dependent_library/tst_cdl_esd.py mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py mmtbx/conformation_dependent_library/tst_enol_peptide.py mmtbx/conformation_dependent_library/tst_hpdl.py mmtbx/conformation_dependent_library/tst_mcl_01.py mmtbx/conformation_dependent_library/tst_mcl_02.py mmtbx/conformation_dependent_library/tst_mcl_03.py mmtbx/conformation_dependent_library/tst_multi_residue_rna.py mmtbx/conformation_dependent_library/tst_mutli_residue.py mmtbx/conformation_dependent_library/tst_omega_cdl.py mmtbx/conformation_dependent_library/tst_pH_mechanism.py mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py mmtbx/conformation_dependent_library/tst_rdl.py mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py mmtbx/density_modification/ mmtbx/density_modification/tst_density_modification.py mmtbx/disorder/ mmtbx/disorder/tst.py mmtbx/disorder/tst_analyze_model.py mmtbx/disorder/tst_backbone.py mmtbx/dynamics/ mmtbx/dynamics/tst_cartesian_dynamics.py mmtbx/dynamics/tst_sa.py mmtbx/geometry/ mmtbx/geometry/tests/ mmtbx/geometry/tests/tst_altloc.py mmtbx/geometry/tests/tst_asa.py mmtbx/geometry/tests/tst_clash.py mmtbx/geometry/tests/tst_indexing.py mmtbx/geometry/tests/tst_shared_types.py mmtbx/geometry/tests/tst_sphere_surface_sampling.py mmtbx/geometry/tests/tst_topology.py mmtbx/geometry_restraints/ mmtbx/geometry_restraints/tst_c_beta_restraints.py mmtbx/geometry_restraints/tst_geo_file_parsing.py mmtbx/geometry_restraints/tst_manager.py mmtbx/geometry_restraints/tst_ramachandran.py mmtbx/geometry_restraints/tst_reference_coordinate.py mmtbx/geometry_restraints/tst_reference_coordinate2.py mmtbx/geometry_restraints/torsion_restraints/ mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py mmtbx/hydrogens/ mmtbx/hydrogens/tst.py mmtbx/hydrogens/tst_add_hydrogen.py mmtbx/hydrogens/tst_add_hydrogen_0.py mmtbx/hydrogens/tst_add_hydrogen_1.py mmtbx/hydrogens/tst_add_hydrogen_2.py mmtbx/hydrogens/tst_add_hydrogen_3.py mmtbx/hydrogens/tst_add_hydrogen_4.py mmtbx/hydrogens/tst_add_hydrogen_5.py mmtbx/hydrogens/tst_add_hydrogen_6.py mmtbx/hydrogens/tst_add_hydrogen_7.py mmtbx/hydrogens/tst_add_hydrogen_8.py mmtbx/hydrogens/tst_add_hydrogen_9.py mmtbx/hydrogens/tst_add_hydrogen_time.py mmtbx/hydrogens/tst_connectivity.py mmtbx/hydrogens/tst_parameterization_1.py mmtbx/hydrogens/tst_parameterization_2.py mmtbx/hydrogens/tst_parameterization_3.py mmtbx/hydrogens/tst_parameterization_4.py mmtbx/hydrogens/tst_parameterization_5.py mmtbx/hydrogens/tst_parameterization_6.py mmtbx/hydrogens/tst_parameterization_7.py mmtbx/hydrogens/tst_parameterization_8.py mmtbx/hydrogens/tst_parameterization_9.py mmtbx/hydrogens/tst_riding_coefficients.py mmtbx/hydrogens/tst_riding_fd_1.py mmtbx/hydrogens/tst_riding_fd_2.py mmtbx/hydrogens/tst_riding_fd_3.py mmtbx/hydrogens/tst_riding_fd_4.py mmtbx/hydrogens/tst_riding_fd_5.py mmtbx/hydrogens/tst_riding_manager.py mmtbx/hydrogens/tst_riding_minimize.py mmtbx/hydrogens/tst_validate_H.py mmtbx/ias/ mmtbx/ias/tst_ias.py mmtbx/idealized_aa_residues/ mmtbx/idealized_aa_residues/tst.py mmtbx/ions/ mmtbx/ions/tst_environment.py mmtbx/ions/tst_geometries.py mmtbx/ions/tst_parameters.py mmtbx/ions/tst_pick_approx_zn.py mmtbx/ions/tst_pick_ca.py mmtbx/ions/tst_pick_ca_svm.py mmtbx/ions/tst_pick_k.py mmtbx/ions/tst_pick_mg.py mmtbx/ions/tst_pickle.py mmtbx/ions/tst_symmetry_axis.py mmtbx/ions/tst_utils.py mmtbx/ions/tst_validate_ca.py mmtbx/ions/tst_validate_mg.py mmtbx/ions/svm/ mmtbx/ions/svm/tst_classifier_01.py mmtbx/ions/svm/tst_classifier_02.py mmtbx/ligands/ mmtbx/ligands/tst_electron_scripting.py mmtbx/ligands/tst_ready_set_utils.py mmtbx/ligands/tst_xtal_screens.py mmtbx/maps/ mmtbx/maps/tst_composite_omit_map.py mmtbx/maps/tst_composite_omit_map_2.py mmtbx/maps/tst_composite_omit_map_3.py mmtbx/maps/tst_correlation.py mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py mmtbx/masks/ mmtbx/masks/tst_asu_mask.py mmtbx/masks/tst_mask.cpp mmtbx/masks/tst_masks.py mmtbx/max_lik/ mmtbx/max_lik/tst_max_lik.py mmtbx/max_lik/tst_maxlik.py mmtbx/monomer_library/ mmtbx/monomer_library/tst_all_cif_files.py mmtbx/monomer_library/tst_carbo_linking.py mmtbx/monomer_library/tst_chg.py mmtbx/monomer_library/tst_cif_triage.py mmtbx/monomer_library/tst_cif_types.py mmtbx/monomer_library/tst_correct_hydrogens.py mmtbx/monomer_library/tst_deuterium_terminii.py mmtbx/monomer_library/tst_geo_reduce_for_tardy.py mmtbx/monomer_library/tst_glyco_coordination.py mmtbx/monomer_library/tst_glyco_hand.py mmtbx/monomer_library/tst_idealized_aa.py mmtbx/monomer_library/tst_iron_sulfur_clusters.py mmtbx/monomer_library/tst_linking.py mmtbx/monomer_library/tst_metal_coordination.py mmtbx/monomer_library/tst_motif.py mmtbx/monomer_library/tst_neutron_distance.py mmtbx/monomer_library/tst_paral_geo.py mmtbx/monomer_library/tst_pdb_interpretation.py mmtbx/monomer_library/tst_pdb_interpretation_2.py mmtbx/monomer_library/tst_pdb_interpretation_3.py mmtbx/monomer_library/tst_pdb_interpretation_4.py mmtbx/monomer_library/tst_pdb_interpretation_5.py mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py mmtbx/monomer_library/tst_protein_interpretation.py mmtbx/monomer_library/tst_rna_dna_interpretation.py mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py mmtbx/monomer_library/tst_rotamer_utils.py mmtbx/monomer_library/tst_selection.py mmtbx/monomer_library/tst_server.py mmtbx/monomer_library/tst_superpose_ideal.py mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py mmtbx/monomer_library/tst_user_supplied_library.py mmtbx/nci/ mmtbx/nci/tst_hbond.py mmtbx/pair_interaction/ mmtbx/pair_interaction/tst_00.py mmtbx/pair_interaction/tst_01.py mmtbx/pair_interaction/tst_02.py mmtbx/pair_interaction/tst_03.py mmtbx/pair_interaction/tst_04.py mmtbx/pair_interaction/tst_05.py mmtbx/polygon/ mmtbx/polygon/tst.py mmtbx/polygon/tst_gui.py mmtbx/polygon/tst_polygon_data.py mmtbx/probe/ mmtbx/probe/tst_mmtbx_probe_ext.py mmtbx/probe/tst_probe.cpp mmtbx/real_space/ mmtbx/real_space/tst.py mmtbx/reduce/ mmtbx/reduce/tst_mmtbx_reduce_ext.py mmtbx/refinement/ mmtbx/refinement/tst_anomalous_scatterer_groups.py mmtbx/refinement/tst_fit_rotamers.py mmtbx/refinement/tst_group.py mmtbx/refinement/tst_group_2.py mmtbx/refinement/tst_misc.py mmtbx/refinement/tst_occupancy_selections.py mmtbx/refinement/tst_real_space_simple.py mmtbx/refinement/tst_refinement_flags.py mmtbx/refinement/tst_rigid_body.py mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py mmtbx/refinement/tst_select_best_starting_model.py mmtbx/refinement/real_space/ mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py mmtbx/refinement/real_space/tst_fit_residue_0.py mmtbx/refinement/real_space/tst_fit_residue_0H.py mmtbx/refinement/real_space/tst_fit_residue_1.py mmtbx/refinement/real_space/tst_fit_residue_1H.py mmtbx/refinement/real_space/tst_fit_residue_2.py mmtbx/refinement/real_space/tst_fit_residue_3.py mmtbx/refinement/real_space/tst_fit_residue_4.py mmtbx/refinement/real_space/tst_fit_residue_5.py mmtbx/refinement/real_space/tst_fit_residue_6.py mmtbx/refinement/real_space/tst_fit_residue_7.py mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py mmtbx/refinement/real_space/tst_fit_residues_1.py mmtbx/refinement/real_space/tst_fit_residues_1H.py mmtbx/refinement/real_space/tst_fit_residues_2.py mmtbx/refinement/real_space/tst_fit_residues_3.py mmtbx/refinement/real_space/tst_fit_residues_4.py mmtbx/refinement/real_space/tst_fit_residues_5.py mmtbx/refinement/real_space/tst_fit_residues_6.py mmtbx/refinement/real_space/tst_fit_residues_selection.py mmtbx/refinement/real_space/tst_fit_water.py mmtbx/refinement/real_space/tst_individual_sites_1.py mmtbx/refinement/real_space/tst_individual_sites_2.py mmtbx/refinement/real_space/tst_individual_sites_3.py mmtbx/refinement/real_space/tst_monitor.py mmtbx/refinement/real_space/tst_rigid_body.py mmtbx/refinement/real_space/tst_weight.py mmtbx/regression/tst_add_arrows_on_plot.py mmtbx/regression/tst_add_h_to_water.py mmtbx/regression/tst_adp_restraints.py mmtbx/regression/tst_alignment.py mmtbx/regression/tst_altloc_chain_break.py mmtbx/regression/tst_altloc_remediate.py mmtbx/regression/tst_angle.py mmtbx/regression/tst_anomalous_substructure.py mmtbx/regression/tst_apply_cif_restraints.py mmtbx/regression/tst_arginine_geometry.py mmtbx/regression/tst_cc_star.py mmtbx/regression/tst_chain_comparison.py mmtbx/regression/tst_chain_comparison_cif.py mmtbx/regression/tst_cif_as_mtz_wavelengths.py mmtbx/regression/tst_cis_trans_peptide_link.py mmtbx/regression/tst_clashes.py mmtbx/regression/tst_command_line_input.py mmtbx/regression/tst_domains_from_pae.py mmtbx/regression/tst_domains_from_pae_cif.py mmtbx/regression/tst_dynamics_cli.py mmtbx/regression/tst_examples.py mmtbx/regression/tst_find_ncs.py mmtbx/regression/tst_find_ss_structure.py mmtbx/regression/tst_find_ss_structure_cif.py mmtbx/regression/tst_flipping_his.py mmtbx/regression/tst_fmodel.py mmtbx/regression/tst_fmodel_2.py mmtbx/regression/tst_fmodel_and_dm.py mmtbx/regression/tst_fmodel_fd.py mmtbx/regression/tst_fmodel_misc.py mmtbx/regression/tst_fmodel_no_cryst1.py mmtbx/regression/tst_geo_min_restraints_phil.py mmtbx/regression/tst_geometry_minimization.py mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py mmtbx/regression/tst_holton_geometry_validation.py mmtbx/regression/tst_isomorphous_difference_misc.py mmtbx/regression/tst_ligand_ncs.py mmtbx/regression/tst_loop_closure.py mmtbx/regression/tst_lrv.py mmtbx/regression/tst_map_model_cc.py mmtbx/regression/tst_map_type_parser.py mmtbx/regression/tst_maps_misc.py mmtbx/regression/tst_metal_link_1.py mmtbx/regression/tst_minimize_chain.py mmtbx/regression/tst_ml_estimate.py mmtbx/regression/tst_mmtbx_refinement_wrappers.py mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py mmtbx/regression/tst_model_map.py mmtbx/regression/tst_model_vs_map.py mmtbx/regression/tst_model_vs_sequence.py mmtbx/regression/tst_models_to_from_chains.py mmtbx/regression/tst_msa.py mmtbx/regression/tst_mtz2map.py mmtbx/regression/tst_multi_residue_class.py mmtbx/regression/tst_origin_ids.py mmtbx/regression/tst_pdbtools.py mmtbx/regression/tst_polder.py mmtbx/regression/tst_polder_1.py mmtbx/regression/tst_polder_2.py mmtbx/regression/tst_polder_3.py mmtbx/regression/tst_polder_4.py mmtbx/regression/tst_polder_box.py mmtbx/regression/tst_polder_ccs.py mmtbx/regression/tst_probe.py mmtbx/regression/tst_process_predicted_model.py mmtbx/regression/tst_process_predicted_model_cif.py mmtbx/regression/tst_prune_model.py mmtbx/regression/tst_psi_phi_extraction.py mmtbx/regression/tst_rank_scale_map.py mmtbx/regression/tst_rdkit_utils_fragmentation.py mmtbx/regression/tst_real_space_correlation.py mmtbx/regression/tst_reduce.py mmtbx/regression/tst_reduce_cryoem_resolution.py mmtbx/regression/tst_reduce_timeout.py mmtbx/regression/tst_refine_anomalous_substructure.py mmtbx/regression/tst_regularize_from_pdb.py mmtbx/regression/tst_regularize_from_pdb_cif.py mmtbx/regression/tst_ribbons.py mmtbx/regression/tst_rigid_bond_test.py mmtbx/regression/tst_ringer.py mmtbx/regression/tst_sampled_model_density.py mmtbx/regression/tst_scattering_table.py mmtbx/regression/tst_scattering_type_registry.py mmtbx/regression/tst_schrodinger_interface.py mmtbx/regression/tst_sequence_validation.py mmtbx/regression/tst_sort_hetatms.py mmtbx/regression/tst_special_term_at_end.py mmtbx/regression/tst_statistics_output.py mmtbx/regression/tst_superpose.py mmtbx/regression/tst_table_one.py mmtbx/regression/tst_utils.py mmtbx/regression/tst_validate_ligands.py mmtbx/regression/tst_validate_ligands_2.py mmtbx/regression/tst_validation_summary.py mmtbx/regression/discamb/ mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_1.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_2.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_3.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_4.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_5.py mmtbx/regression/discamb/tst_IAM_gradients_1.py mmtbx/regression/discamb/tst_fmodel_fd_discamb.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam_tyr.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_1.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_2.py mmtbx/regression/fix_cablam/ mmtbx/regression/fix_cablam/tst_basic_cl_operations.py mmtbx/regression/fix_cablam/tst_insertion_codes.py mmtbx/regression/fix_cablam/tst_one_resid_rotation.py mmtbx/regression/fix_cablam/tst_single_outliers_surroundings.py mmtbx/regression/model/ mmtbx/regression/model/tst_model.py mmtbx/regression/model/tst_model_2.py mmtbx/regression/model/tst_model_biomt_mtrix.py mmtbx/regression/model/tst_model_biomt_mtrix_2.py mmtbx/regression/model/tst_model_cart_ref_restraints.py mmtbx/regression/model/tst_model_dedeuterate.py mmtbx/regression/model/tst_model_get_vdw_radii.py mmtbx/regression/model/tst_model_merge.py mmtbx/regression/model/tst_model_mtrix.py mmtbx/regression/model/tst_model_ncs.py mmtbx/regression/model/tst_model_neutralize_scatterers.py mmtbx/regression/model/tst_model_pairs_within.py mmtbx/regression/model/tst_model_ramachandran.py mmtbx/regression/model/tst_model_remove_alternative_conformations.py mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py mmtbx/regression/model/tst_model_symmetry.py mmtbx/regression/model/tst_model_tors_ref_restraints.py mmtbx/regression/model/tst_model_utils_merge_models.py mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py mmtbx/regression/model_idealization/ mmtbx/regression/model_idealization/tst_ext_map_01.py mmtbx/regression/model_idealization/tst_ligands.py mmtbx/regression/model_idealization/tst_nomap_01.py mmtbx/regression/model_idealization/tst_nomap_02.py mmtbx/regression/model_idealization/tst_nomap_03.py mmtbx/regression/model_idealization/tst_nomap_04.py mmtbx/regression/model_idealization/tst_with_mtz.py mmtbx/regression/model_idealization/tst_withmap_01.py mmtbx/regression/model_idealization/tst_withmap_02.py mmtbx/regression/model_idealization/tst_withmap_03.py mmtbx/regression/model_idealization/tst_withmap_04.py mmtbx/regression/model_idealization/tst_withmap_05.py mmtbx/regression/model_idealization/tst_withmap_06.py mmtbx/regression/mtz/ mmtbx/regression/mtz/tst_xtriage_fmodel.mtz mmtbx/regression/ncs/ mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py mmtbx/regression/ncs/tst_ncs_restraints_group_list.py mmtbx/regression/ncs/tst_ncs_search.py mmtbx/regression/ncs/tst_ncs_search_flips.py mmtbx/regression/ncs/tst_ncs_utils.py mmtbx/regression/ncs/tst_restraints.py mmtbx/regression/pdb_interpretation/ mmtbx/regression/pdb_interpretation/tst_custom_nb_sym_excl.py mmtbx/regression/pdb_interpretation/tst_edits.py mmtbx/regression/pdb_interpretation/tst_edits_actions.py mmtbx/regression/pdb_interpretation/tst_tardy_geo.py mmtbx/regression/pdb_interpretation/tst_using_ncs_1.py mmtbx/regression/pdb_interpretation/tst_using_ncs_2.py mmtbx/regression/real_space_refine_chain/ mmtbx/regression/real_space_refine_chain/tst_00.py mmtbx/regression/real_space_refine_chain/tst_01.py mmtbx/regression/tls/ mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py mmtbx/regression/tls/tst_get_t_scheme.py mmtbx/regression/tls/tst_tls.py mmtbx/regression/tls/tst_tls_analysis.py mmtbx/regression/tls/tst_tls_as_xyz.py mmtbx/regression/tls/tst_tls_optimise_amplitudes.py mmtbx/regression/tls/tst_tls_refinement_fft.py mmtbx/regression/tls/tst_tls_utils.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py mmtbx/regression/tncs/ mmtbx/regression/tncs/tst_epsfac_and_radius.py mmtbx/regression/tncs/tst_fd.py mmtbx/regression/tncs/tst_moments.py mmtbx/regression/tncs/tst_pair.py mmtbx/ringer/ mmtbx/ringer/tst_em_rscc.py mmtbx/ringer/tst_emringer.py mmtbx/rotamer/ mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py mmtbx/rotamer/tst_rotamer_eval.py mmtbx/rsr/ mmtbx/rsr/tst.py mmtbx/scaling/ mmtbx/scaling/tst_absences.py mmtbx/scaling/tst_bayesian_estimator.py mmtbx/scaling/tst_massage_data.py mmtbx/scaling/tst_mean_f_rms_f.py mmtbx/scaling/tst_outlier.py mmtbx/scaling/tst_plan_sad_experiment.py mmtbx/scaling/tst_scaling.py mmtbx/scaling/tst_sigmaa.py mmtbx/scaling/tst_xtriage.py mmtbx/scaling/tst_xtriage_twin_analyses.py mmtbx/secondary_structure/ mmtbx/secondary_structure/tst.py mmtbx/secondary_structure/tst_insertion_codes.py mmtbx/secondary_structure/tst_segid.py mmtbx/secondary_structure/build/ mmtbx/secondary_structure/build/tst_1.py mmtbx/secondary_structure/build/tst_2.py mmtbx/secondary_structure/build/tst_3.py mmtbx/secondary_structure/build/tst_io.py mmtbx/secondary_structure/build/tst_ss_id_ncs.py mmtbx/utils/ mmtbx/utils/tst_switch_rotamers.py mmtbx/validation/ mmtbx/validation/regression/ mmtbx/validation/regression/tst_cablam.py mmtbx/validation/regression/tst_cablam_2.py mmtbx/validation/regression/tst_cbetadev.py mmtbx/validation/regression/tst_cbetadev_02.py mmtbx/validation/regression/tst_chiral_validation.py mmtbx/validation/regression/tst_clashscore.py mmtbx/validation/regression/tst_clashscore_2.py mmtbx/validation/regression/tst_do_flips_clashscore.py mmtbx/validation/regression/tst_experimental.py mmtbx/validation/regression/tst_find_region_max_value.py mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py mmtbx/validation/regression/tst_keep_hydrogens.py mmtbx/validation/regression/tst_model_properties.py mmtbx/validation/regression/tst_molprobity_1.py mmtbx/validation/regression/tst_molprobity_2.py mmtbx/validation/regression/tst_molprobity_3.py mmtbx/validation/regression/tst_molprobity_4.py mmtbx/validation/regression/tst_molprobity_5.py mmtbx/validation/regression/tst_molprobity_arguments.py mmtbx/validation/regression/tst_mp_geo.py mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py mmtbx/validation/regression/tst_mp_geo_endtoend.py mmtbx/validation/regression/tst_mp_validate_bonds.py mmtbx/validation/regression/tst_omegalyze.py mmtbx/validation/regression/tst_rama_z_01.py mmtbx/validation/regression/tst_rama_z_02.py mmtbx/validation/regression/tst_ramalyze.py mmtbx/validation/regression/tst_ramalyze2.py mmtbx/validation/regression/tst_ramalyze_rare.py mmtbx/validation/regression/tst_restraints.py mmtbx/validation/regression/tst_rna_validate.py mmtbx/validation/regression/tst_rotalyze.py mmtbx/validation/regression/tst_suitename.py mmtbx/validation/regression/tst_symmetry_SS.py mmtbx/validation/regression/tst_undowser.py mmtbx/validation/regression/tst_undowser2.py mmtbx/validation/regression/tst_waters.py mmtbx/wwpdb/ mmtbx/wwpdb/tst_rcsb_entry_request.py mmtbx/wwpdb/tst_rcsb_web_services.py sent 7,763,992 bytes received 8,514 bytes 818,158.53 bytes/sec total size is 7,731,965 speedup is 0.99 building file list ... done omptbx/ omptbx/tst.py sent 1,313 bytes received 38 bytes 2,702.00 bytes/sec total size is 1,175 speedup is 0.87 building file list ... done rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/tst_detector_model.py rstbx/cftbx/ rstbx/cftbx/tst_coordinate_frame_converter.py rstbx/diffraction/ rstbx/diffraction/tst_ewald_sphere.py rstbx/diffraction/tst_partial_derivatives.py rstbx/diffraction/tst_predict.py rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/tst_bragg_minimal.py rstbx/diffraction/fastbragg/tst_utils_clustering.py rstbx/dps_core/ rstbx/dps_core/tst_iotbx_converter.py rstbx/indexing/ rstbx/indexing/tst_auto_monoscan.py rstbx/indexing/tst_dataset1.py rstbx/simage/ rstbx/simage/tst.py rstbx/simulation/ rstbx/simulation/tst_xfel1_simple.py rstbx/sublattice_support/ rstbx/sublattice_support/tst_sublattice.py rstbx/viewer/ rstbx/viewer/tst.py sent 181,050 bytes received 311 bytes 120,907.33 bytes/sec total size is 179,407 speedup is 0.99 building file list ... done scitbx/array_family/ scitbx/array_family/tst_accessors.cpp scitbx/array_family/tst_af_1.cpp scitbx/array_family/tst_af_2.cpp scitbx/array_family/tst_af_3.cpp scitbx/array_family/tst_af_4.cpp scitbx/array_family/tst_af_5.cpp scitbx/array_family/tst_af_helpers.cpp scitbx/array_family/tst_mat3.cpp scitbx/array_family/tst_optional_copy.cpp scitbx/array_family/tst_rectangular_full_packed.cpp scitbx/array_family/tst_ref_matrix_facet.cpp scitbx/array_family/tst_sym_mat3.cpp scitbx/array_family/tst_unsigned_float_arithmetic.cpp scitbx/array_family/tst_vec3.cpp scitbx/array_family/boost_python/ scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py scitbx/array_family/boost_python/tst_flex.py scitbx/array_family/boost_python/tst_flex_argument_passing.py scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py scitbx/array_family/boost_python/tst_numpy_bridge.py scitbx/array_family/boost_python/tst_shared.py scitbx/array_family/boost_python/tst_smart_selection.py scitbx/dtmin/ scitbx/dtmin/regression/ scitbx/dtmin/regression/tst_dtmin_basic.py scitbx/dtmin/regression/tst_dtmin_booth.py scitbx/dtmin/regression/tst_dtmin_twisted.py scitbx/error/ scitbx/error/tst_error.cpp scitbx/error/tst_error.py scitbx/fftpack/ scitbx/fftpack/boost_python/ scitbx/fftpack/boost_python/tst_fftpack.py scitbx/fftpack/timing/ scitbx/fftpack/timing/tst3d.cpp scitbx/glmtbx/ scitbx/glmtbx/tests/ scitbx/glmtbx/tests/tst.py scitbx/graph/ scitbx/graph/tst_rigidity.py scitbx/graph/tst_tardy_tree.py scitbx/graph/tst_tardy_tree_find_paths.py scitbx/graph/tst_utils.py scitbx/graphics_utils/ scitbx/graphics_utils/tst.py scitbx/iso_surface/ scitbx/iso_surface/tst_iso_surface.m scitbx/iso_surface/tst_iso_surface.py scitbx/lbfgs/ scitbx/lbfgs/tst_curvatures.py scitbx/lbfgs/tst_ext.py scitbx/lbfgs/tst_func_free_line_search.py scitbx/lbfgs/tst_lbfgs.cpp scitbx/lbfgs/tst_lbfgs_fem.py scitbx/lbfgs/tst_mpi_split_evaluator.py scitbx/lbfgsb/ scitbx/lbfgsb/boost_python/ scitbx/lbfgsb/boost_python/tst_fit_cdf.py scitbx/lbfgsb/boost_python/tst_lbfgsb.py scitbx/linalg/ scitbx/linalg/tests/ scitbx/linalg/tests/tst_cholesky.py scitbx/linalg/tests/tst_eigensystem.py scitbx/linalg/tests/tst_lapack_dsyev.py scitbx/linalg/tests/tst_lapack_svd.py scitbx/linalg/tests/tst_matrix.py scitbx/linalg/tests/tst_svd.py scitbx/lstbx/ scitbx/lstbx/tests/ scitbx/lstbx/tests/tst_normal_equations.nb scitbx/lstbx/tests/tst_normal_equations.py scitbx/math/ scitbx/math/tst_2d_zernike.py scitbx/math/tst_bessel_zeros.py scitbx/math/tst_multivariate_moments.py scitbx/math/tst_so3_lie_algebra.py scitbx/math/tst_undirected_graph.py scitbx/math/tst_zernike.py scitbx/math/tst_zernike_mom.py scitbx/math/tests/ scitbx/math/tests/tst.cpp scitbx/math/tests/tst_angle_derivative.py scitbx/math/tests/tst_bessel.py scitbx/math/tests/tst_clustering.py scitbx/math/tests/tst_cubic_equation.py scitbx/math/tests/tst_curve_fitting.py scitbx/math/tests/tst_dmatrix.py scitbx/math/tests/tst_error_propagation_matrix_inverse.py scitbx/math/tests/tst_euler_angles.py scitbx/math/tests/tst_exp_functions.py scitbx/math/tests/tst_fit_peak.py scitbx/math/tests/tst_fit_quadratic_function.py scitbx/math/tests/tst_g_function.py scitbx/math/tests/tst_gaussian.py scitbx/math/tests/tst_gaussian_fit_1d_analytical.py scitbx/math/tests/tst_gcd.py scitbx/math/tests/tst_halton.py scitbx/math/tests/tst_line_search.py scitbx/math/tests/tst_math.py scitbx/math/tests/tst_minimum_covering_ellipsoid.py scitbx/math/tests/tst_orthonormal_basis.py scitbx/math/tests/tst_periodogram.py scitbx/math/tests/tst_quadrature.py scitbx/math/tests/tst_r3_rotation.py scitbx/math/tests/tst_resample.py scitbx/math/tests/tst_similarity_indices.py scitbx/math/tests/tst_superpose.py scitbx/math/tests/tst_tetrahedron.py scitbx/math/tests/tst_uniform_rotation_matrix.py scitbx/math/tests/tst_weighted_correlation.py scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky.cpp scitbx/matrix/tests/tst_givens.cpp scitbx/matrix/tests/tst_householder.cpp scitbx/matrix/tests/tst_householder.nb scitbx/matrix/tests/tst_householder.py scitbx/matrix/tests/tst_row_echelon.py scitbx/matrix/tests/tst_svd.cpp scitbx/matrix/tests/tst_svd.nb scitbx/matrix/tests/tst_svd_accuracy.nb scitbx/minpack/ scitbx/minpack/tst.py scitbx/python_utils/ scitbx/python_utils/tst_graph.py scitbx/python_utils/tst_random_transform.py scitbx/python_utils/tst_robust.py scitbx/random/ scitbx/random/tests/ scitbx/random/tests/tst_random.py scitbx/rigid_body/ scitbx/rigid_body/tst.py scitbx/rigid_body/essence/ scitbx/rigid_body/essence/tst_basic.py scitbx/rigid_body/essence/tst_energy_plots.py scitbx/rigid_body/essence/tst_tardy.py scitbx/rigid_body/proto/ scitbx/rigid_body/proto/tst_featherstone.py scitbx/rigid_body/proto/tst_free_motion.py scitbx/rigid_body/proto/tst_free_motion_hard.py scitbx/rigid_body/proto/tst_joint_lib.py scitbx/rigid_body/proto/tst_molecules.py scitbx/rigid_body/proto/tst_singular.py scitbx/rigid_body/proto/tst_spherical_refinement.py scitbx/serialization/ scitbx/serialization/tst_base_256.cpp scitbx/sparse/ scitbx/sparse/tests/ scitbx/sparse/tests/tst_lu_factorization.py scitbx/sparse/tests/tst_sparse.cpp scitbx/sparse/tests/tst_sparse.py scitbx/stl/ scitbx/stl/tst_map.py scitbx/stl/tst_set.py scitbx/stl/tst_vector.py scitbx/suffixtree/ scitbx/suffixtree/test/ scitbx/suffixtree/test/tst_single.py scitbx/tests/ scitbx/tests/tst_basic.csh scitbx/tests/tst_basic.py scitbx/tests/tst_cubicle_neighbors.py scitbx/tests/tst_genetic_algorithm_with_mp.py scitbx/tests/tst_minimizer_lbfgs_general.py scitbx/tests/tst_r3_utils.py scitbx/tests/tst_regular_grid_on_unit_sphere.py scitbx/tests/tst_smoothing.py scitbx/wigner/ scitbx/wigner/tst_wigner3j.py sent 1,122,958 bytes received 2,622 bytes 750,386.67 bytes/sec total size is 1,112,609 speedup is 0.99 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ab_initio/ smtbx/ab_initio/tests/ smtbx/ab_initio/tests/tst_ab_initio_ext.py smtbx/ab_initio/tests/tst_charge_flipping.py smtbx/absolute_structure/ smtbx/absolute_structure/tests/ smtbx/absolute_structure/tests/tst_absolute_structure.py smtbx/masks/ smtbx/masks/tests/ smtbx/masks/tests/tst_masks.py smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_constrained_structure.py smtbx/refinement/constraints/tests/tst_direction.py smtbx/refinement/constraints/tests/tst_disorder.py smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp smtbx/refinement/constraints/tests/tst_lbfgs.py smtbx/refinement/constraints/tests/tst_occupancies.py smtbx/refinement/constraints/tests/tst_reparametrisation.cpp smtbx/refinement/constraints/tests/tst_reparametrisation.py smtbx/refinement/constraints/tests/tst_rigid.py smtbx/refinement/constraints/tests/tst_same_group.py smtbx/refinement/constraints/tests/tst_special_position.cpp smtbx/refinement/restraints/ smtbx/refinement/restraints/tests/ smtbx/refinement/restraints/tests/tst_adp_restraints.py smtbx/refinement/restraints/tests/tst_manager.py smtbx/refinement/restraints/tests/tst_restraints.py smtbx/refinement/tests/ smtbx/refinement/tests/tst_least_squares.py smtbx/refinement/tests/tst_weighting_schemes.py smtbx/regression/ smtbx/regression/tst_commandline_anomrefine.py smtbx/regression/tst_commandline_refine.py smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/tests/ smtbx/structure_factors/direct/tests/tst_standard_xray.py smtbx/tests/ smtbx/tests/tst_utils.py sent 250,736 bytes received 519 bytes 167,503.33 bytes/sec total size is 248,243 speedup is 0.99 building file list ... done spotfinder/core_toolbox/ spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/tst_small_image.py sent 5,469 bytes received 37 bytes 11,012.00 bytes/sec total size is 5,074 speedup is 0.92 building file list ... done tbxx/ tbxx/tests/ tbxx/tests/tst_pretty_type_name.cpp sent 493 bytes received 41 bytes 1,068.00 bytes/sec total size is 323 speedup is 0.60 building file list ... done wxtbx/regression/ wxtbx/regression/tst_process_control.py sent 2,011 bytes received 34 bytes 4,090.00 bytes/sec total size is 1,770 speedup is 0.87 building file list ... done ./ annlib_adaptbx/ annlib_adaptbx/tests/ annlib_adaptbx/tests/data.txt annlib_adaptbx/tests/query.txt cctbx/maptbx/bcr/tables/ cctbx/maptbx/bcr/tables/Ag1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag_electron.json.gz cctbx/maptbx/bcr/tables/Ag_wk1995.json.gz cctbx/maptbx/bcr/tables/Al3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Al_electron.json.gz cctbx/maptbx/bcr/tables/Al_wk1995.json.gz cctbx/maptbx/bcr/tables/Au1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au_electron.json.gz cctbx/maptbx/bcr/tables/Au_wk1995.json.gz cctbx/maptbx/bcr/tables/B_electron.json.gz cctbx/maptbx/bcr/tables/B_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba_electron.json.gz cctbx/maptbx/bcr/tables/Ba_wk1995.json.gz cctbx/maptbx/bcr/tables/Br1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Br_electron.json.gz cctbx/maptbx/bcr/tables/Br_wk1995.json.gz cctbx/maptbx/bcr/tables/C_electron.json.gz cctbx/maptbx/bcr/tables/C_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca_electron.json.gz cctbx/maptbx/bcr/tables/Ca_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd_electron.json.gz cctbx/maptbx/bcr/tables/Cd_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl_electron.json.gz cctbx/maptbx/bcr/tables/Cl_wk1995.json.gz cctbx/maptbx/bcr/tables/Co2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co_electron.json.gz cctbx/maptbx/bcr/tables/Co_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr_electron.json.gz cctbx/maptbx/bcr/tables/Cr_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu_electron.json.gz cctbx/maptbx/bcr/tables/Cu_wk1995.json.gz cctbx/maptbx/bcr/tables/D1-_wk1995.json.gz cctbx/maptbx/bcr/tables/D_wk1995.json.gz cctbx/maptbx/bcr/tables/F1-_wk1995.json.gz cctbx/maptbx/bcr/tables/F_electron.json.gz cctbx/maptbx/bcr/tables/F_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe_electron.json.gz cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz cctbx/maptbx/bcr/tables/H_electron.json.gz cctbx/maptbx/bcr/tables/H_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg_electron.json.gz cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz cctbx/maptbx/bcr/tables/I_electron.json.gz cctbx/maptbx/bcr/tables/I_wk1995.json.gz cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz cctbx/maptbx/bcr/tables/K_electron.json.gz cctbx/maptbx/bcr/tables/K_wk1995.json.gz cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Li_electron.json.gz cctbx/maptbx/bcr/tables/Li_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg_electron.json.gz cctbx/maptbx/bcr/tables/Mg_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn_electron.json.gz cctbx/maptbx/bcr/tables/Mn_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo5+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo6+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo_electron.json.gz cctbx/maptbx/bcr/tables/Mo_wk1995.json.gz cctbx/maptbx/bcr/tables/N_electron.json.gz cctbx/maptbx/bcr/tables/N_wk1995.json.gz cctbx/maptbx/bcr/tables/Na1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Na_electron.json.gz cctbx/maptbx/bcr/tables/Na_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni_electron.json.gz cctbx/maptbx/bcr/tables/Ni_wk1995.json.gz cctbx/maptbx/bcr/tables/O1-_wk1995.json.gz cctbx/maptbx/bcr/tables/O2-_wk1995.json.gz cctbx/maptbx/bcr/tables/O_electron.json.gz cctbx/maptbx/bcr/tables/O_wk1995.json.gz cctbx/maptbx/bcr/tables/P_electron.json.gz cctbx/maptbx/bcr/tables/P_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt_electron.json.gz cctbx/maptbx/bcr/tables/Pt_wk1995.json.gz cctbx/maptbx/bcr/tables/S_electron.json.gz cctbx/maptbx/bcr/tables/S_wk1995.json.gz cctbx/maptbx/bcr/tables/Se_electron.json.gz cctbx/maptbx/bcr/tables/Se_wk1995.json.gz cctbx/maptbx/bcr/tables/Si4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Si_electron.json.gz cctbx/maptbx/bcr/tables/Si_wk1995.json.gz cctbx/maptbx/bcr/tables/T1-_wk1995.json.gz cctbx/maptbx/bcr/tables/T_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti_electron.json.gz cctbx/maptbx/bcr/tables/Ti_wk1995.json.gz cctbx/maptbx/bcr/tables/Zn2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Zn_electron.json.gz cctbx/maptbx/bcr/tables/Zn_wk1995.json.gz cctbx/regression/itvb_2001_table_a1427_hall_symbols.html cctbx/regression/data/ cctbx/regression/data/D7.ccp4 cctbx/regression/data/D7.ncs_spec cctbx/regression/data/D7.pdb cctbx/regression/data/D7.seq cma_es/cma/ cma_es/cma/initials.par fable/fem/ fable/fem/major_types.hpp fable/test/sf_times.py fable/test/lenient/ fable/test/lenient/NOTE fable/test/lenient/calling_non_external_arg.f fable/test/lenient/str_blank_str.f fable/test/lenient/str_cont_line_str.f fable/test/semantic_error/ fable/test/semantic_error/assignment_to_parameter.f fable/test/semantic_error/calling_array.f 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fable/test/unsupported/ fable/test/unsupported/goto_into_loop.f fable/test/unsupported/hollerith_cont_lines.f fable/test/unsupported/hollerith_with_quotes.f fable/test/unsupported/parameter_pow.f fable/test/valid/ fable/test/valid/add_dp_integer.f fable/test/valid/add_real_integer.f fable/test/valid/add_reals.f fable/test/valid/add_strings.f fable/test/valid/arr_float_2.f fable/test/valid/array_origin.f fable/test/valid/assign_to_array_elements.f fable/test/valid/blockdata_named.f fable/test/valid/blockdata_unnamed.f fable/test/valid/character_1_array_passing.f fable/test/valid/character_1_f90.f fable/test/valid/character_function.f fable/test/valid/character_function_2.f fable/test/valid/character_function_3.f fable/test/valid/combine_decl_1.f fable/test/valid/comments.f fable/test/valid/common_0.f fable/test/valid/common_1.f fable/test/valid/common_2.f fable/test/valid/common_3.f fable/test/valid/common_4.f fable/test/valid/common_equivalence_1.f 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fable/test/valid/read_unformatted_str_arr.f fable/test/valid/real_array_sum.f fable/test/valid/recursive_subroutine.f fable/test/valid/rewind.f fable/test/valid/save_0.f fable/test/valid/save_1.f fable/test/valid/save_2.f fable/test/valid/save_3.f fable/test/valid/save_equivalence_1.f fable/test/valid/scopes_1.f fable/test/valid/scopes_2.f fable/test/valid/scopes_3.f fable/test/valid/scopes_4.f fable/test/valid/sf.f fable/test/valid/sign.f fable/test/valid/stop_bare.f fable/test/valid/stop_integer.f fable/test/valid/stop_string.f fable/test/valid/string_array.f fable/test/valid/string_array_declarations.f fable/test/valid/string_assign_to_slice.f fable/test/valid/string_common_dims.f fable/test/valid/string_compare.f fable/test/valid/string_concat.f fable/test/valid/string_spanning_continuation_lines.f fable/test/valid/string_sub_array_passing.f fable/test/valid/strings_size_dim.f fable/test/valid/strings_size_dim_data.f fable/test/valid/sub_fun_1.f fable/test/valid/sub_fun_3.f fable/test/valid/sub_nums_size_capacity.f fable/test/valid/sub_star.f fable/test/valid/subroutine_1.f fable/test/valid/subroutine_2.f fable/test/valid/subroutine_3.f fable/test/valid/subroutine_4.f fable/test/valid/subroutine_5.f fable/test/valid/subroutine_6.f fable/test/valid/subroutine_7.f fable/test/valid/subroutine_8.f fable/test/valid/subroutine_9.f fable/test/valid/subroutine_write_iunit.f fable/test/valid/subroutine_zero.f fable/test/valid/tab_syndrome.f fable/test/valid/triple_3d.f fable/test/valid/triple_3d_common.f fable/test/valid/unformatted_experiments.f fable/test/valid/unused_arg_implicit_none.f fable/test/valid/unused_args.f fable/test/valid/using_intrinsics.f fable/test/valid/write_1.f fable/test/valid/write_err.f fable/test/valid/write_extra_parentheses.f fable/test/valid/write_fmt_double.f fable/test/valid/write_format.f fable/test/valid/write_format_with_colon.f fable/test/valid/write_implied_do_1.f fable/test/valid/write_implied_do_2.f fable/test/valid/write_implied_do_3.f fable/test/valid/write_implied_do_4.f fable/test/valid/write_implied_do_5.f fable/test/valid/write_internal_file.f fable/test/valid/write_internal_file_2.f fable/test/valid/write_internal_file_3.f fable/test/valid/write_internal_file_4.f fable/test/valid/write_pow.f fable/test/valid/write_read_end_err_implied_do.f fable/test/valid/write_read_unformatted.f fable/test/valid/write_star.f fable/test/valid/write_star_real_star_4.f fable/test/valid/write_star_real_star_8.f iotbx/bioinformatics/test/alignment.pir iotbx/bioinformatics/test/ebi_blast.xml.gz iotbx/bioinformatics/test/ncbi_blast.xml.gz iotbx/ccp4_map/ccp4_20_21_22_to_30_40_50.ccp4 iotbx/examples/pdb_truncate_to_ala/__init__.py iotbx/examples/pdb_truncate_to_ala/crambin_pieces.pdb iotbx/examples/pdb_truncate_to_ala/resname_mix.pdb iotbx/examples/pdb_truncate_to_ala/tutorial.txt iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py iotbx/examples/pdb_truncate_to_ala/v2_simple.py iotbx/examples/pdb_truncate_to_ala/v3_better.py iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py iotbx/regression/data/ iotbx/regression/data/1yjp.pdb iotbx/regression/data/2ERL.pdb iotbx/regression/data/D7.ccp4 iotbx/regression/data/big_cube_model.cif iotbx/regression/data/big_cube_model.pdb iotbx/regression/data/cu3182Isup2.hkl iotbx/regression/data/cu3182sup1.cif iotbx/regression/data/insulin_unmerged_cutted_from_ccp4.mtz iotbx/regression/data/mmma.ccp4 iotbx/regression/data/mmmab.ccp4 iotbx/regression/data/mmmb.ccp4 iotbx/regression/data/non_zero_origin_map.ccp4 iotbx/regression/data/non_zero_origin_model.cif iotbx/regression/data/non_zero_origin_model.pdb iotbx/regression/data/non_zero_origin_model_split.cif iotbx/regression/data/non_zero_origin_model_split.pdb iotbx/regression/data/non_zero_origin_ncs_model.cif iotbx/regression/data/non_zero_origin_ncs_model.pdb iotbx/regression/data/non_zero_origin_ncs_spec.ncs_spec iotbx/regression/data/pdb1zff.ent iotbx/regression/data/phaser_1.mtz iotbx/regression/data/shelx.ins iotbx/xds/tests/INTEGRATE.HKL iotbx/xds/tests/NEW_XPARM.XDS iotbx/xds/tests/XDS.INP iotbx/xds/tests/XDS_2.INP iotbx/xds/tests/XPARM.XDS libtbx/citations.params mmtbx/regression/pdbs/ mmtbx/regression/pdbs/1ucs_cutted_xyz_rounded.pdb mmtbx/regression/pdbs/1yjp_h.pdb mmtbx/regression/pdbs/7n2l.pdb mmtbx/regression/pdbs/AF_json_v3.cif mmtbx/regression/pdbs/AF_json_v3.pdb mmtbx/regression/pdbs/Fe_1brf_snip_reduced.pdb mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.cif mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.pdb mmtbx/regression/pdbs/ligand_before_prot.pdb mmtbx/regression/pdbs/one_chain_ligand_water.pdb mmtbx/regression/pdbs/p9.pdb mmtbx/regression/pdbs/pae.pdb mmtbx/regression/pdbs/pae_model.cif mmtbx/regression/pdbs/pae_model.pdb mmtbx/regression/pdbs/test1.cif mmtbx/regression/pdbs/two_chains.pdb mmtbx/regression/pdbs/two_chains_ligand_water.pdb rstbx/indexing/results2.dat rstbx/indexing/si_brief.dat rstbx/indexing/si_synthetic.dat scitbx/array_family/boost_python/regression_test.py scitbx/tests/__init__.py scitbx/tests/differential_evolution.py scitbx/tests/direct_search_simulated_annealing.py scitbx/tests/golden_section_search.py scitbx/tests/simplex.py smtbx/regression/test_data/ smtbx/regression/test_data/sucrose_p1.res smtbx/regression/test_data/thpp.cif smtbx/regression/test_data/thpp.hkl smtbx/regression/test_data/thpp.ins sent 84,873,997 bytes received 11,276 bytes 33,954,109.20 bytes/sec total size is 84,750,513 speedup is 1.00 make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' dh_install -p libcctbx0 usr/lib/loongarch64-linux-gnu/lib*.so.* install -m0755 -d debian/libcctbx0//usr/lib/loongarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libccp4io.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libomptbx.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/librstbx.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0//usr/lib/loongarch64-linux-gnu/ dh_install -p libcctbx-dev usr/include/ install -m0755 -d debian/libcctbx-dev//usr cp --reflink=auto -a debian/tmp/usr/include/ debian/libcctbx-dev//usr/ dh_install -p libcctbx-dev usr/lib/loongarch64-linux-gnu/lib*.so install -m0755 -d debian/libcctbx-dev//usr/lib/loongarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/loongarch64-linux-gnu/libann_adaptor.so debian/tmp/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so debian/tmp/usr/lib/loongarch64-linux-gnu/libcbf-private.so debian/tmp/usr/lib/loongarch64-linux-gnu/libccp4io.so debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx.so debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so debian/tmp/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so debian/tmp/usr/lib/loongarch64-linux-gnu/libomptbx.so debian/tmp/usr/lib/loongarch64-linux-gnu/librstbx.so debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so debian/tmp/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so debian/tmp/usr/lib/loongarch64-linux-gnu/libspotfinder.so debian/libcctbx-dev//usr/lib/loongarch64-linux-gnu/ dh_install -p python3-cctbx usr/bin install -m0755 -d debian/python3-cctbx//usr cp --reflink=auto -a debian/tmp/usr/bin debian/python3-cctbx//usr/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// dh_install -p python3-cctbx usr/lib/cctbx install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/cctbx debian/python3-cctbx//usr/lib/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// dh_install -p python3-cctbx usr/lib/python* install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/python3.13 debian/tmp/usr/lib/python3.14 debian/python3-cctbx//usr/lib/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// rm debian/python3-cctbx/usr/lib/python3*/dist-packages/boost/__init__.py make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/copyright debian/libcctbx0/usr/share/doc/libcctbx0/copyright install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/copyright debian/libcctbx-dev/usr/share/doc/libcctbx-dev/copyright install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/copyright debian/python3-cctbx/usr/share/doc/python3-cctbx/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/.debhelper/generated/libcctbx-dev/dh_installchangelogs.dch.trimmed debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog.Debian install -p -m0644 ./CHANGELOG.rst debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/.debhelper/generated/libcctbx0/dh_installchangelogs.dch.trimmed debian/libcctbx0/usr/share/doc/libcctbx0/changelog.Debian install -p -m0644 ./CHANGELOG.rst debian/libcctbx0/usr/share/doc/libcctbx0/changelog install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/.debhelper/generated/python3-cctbx/dh_installchangelogs.dch.trimmed debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog.Debian install -p -m0644 ./CHANGELOG.rst debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:87: version: 7.20260309 D: dh_python3 dh_python3:88: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:89: options: DHPythonOptions(O=['--buildsystem=pybuild'], accept_upstream_versions=False, arch=True, clean_dbg_pkg=True, compile_all=False, depends=[], depends_section=[], guess_deps=True, ignore_shebangs=False, no_ext_rename=False, no_package=[], no_shebang_rewrite=False, package=[], private_dir=None, recommends=[], recommends_section=[], regexpr=[], remaining_packages=False, requires=[], shebang=None, skip_private=False, suggests=[], suggests_section=[], verbose=True, vrange=None, write_log=False) D: dh_python3 dh_python3:90: supported Python versions: 3.13,3.14 (default=3.13) D: dh_python3 debhelper:213: skipping package libcctbx0 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:213: skipping package libcctbx-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:223: source=cctbx, binary packages=['python3-cctbx'] D: dh_python3 dh_python3:117: processing package python3-cctbx... D: dh_python3 fs:60: moving files from debian/python3-cctbx/usr/lib/python3.13/dist-packages to debian/python3-cctbx/usr/lib/python3/dist-packages/ D: dh_python3 tools:296: invoking: /usr/bin/python3.13 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:524: renaming dxtbx_masking_ext.so to dxtbx_masking_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_masks_ext.so to cctbx_masks_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_neutron_ext.so to cctbx_eltbx_neutron_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cma_es_ext.so to cma_es_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming std_pair_ext.so to std_pair_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_lbfgs_ext.so to scitbx_lbfgs_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_detectors_ext.so to iotbx_detectors_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_min_cut_max_flow_ext.so to boost_adaptbx_graph_min_cut_max_flow_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_array_family_flex_ext.so to cctbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_refinement_constraints_ext.so to smtbx_refinement_constraints_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_dynamics_ext.so to mmtbx_dynamics_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming spotfinder_array_family_flex_ext.so to spotfinder_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming spotfinder_dxtbx_ext.so to spotfinder_dxtbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_flumpy.so to dxtbx_flumpy.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming spotfinder_hough_ext.so to spotfinder_hough_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_merging_ext.so to cctbx_merging_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_xray_ext.so to cctbx_xray_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_f_model_ext.so to mmtbx_f_model_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_sgtbx_ext.so to cctbx_sgtbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_reduce_ext.so to mmtbx_reduce_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming spotfinder_distltbx_ext.so to spotfinder_distltbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_metric_ext.so to boost_adaptbx_graph_metric_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_stl_vector_ext.so to scitbx_stl_vector_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_sphere_surface_sampling_ext.so to mmtbx_geometry_sphere_surface_sampling_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_python_meta_ext.so to boost_python_meta_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_simulation_ext.so to rstbx_simulation_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_r3_utils_ext.so to scitbx_r3_utils_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_structure_factors_direct_ext.so to smtbx_structure_factors_direct_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_wigner_ext.so to scitbx_wigner_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_henke_ext.so to cctbx_eltbx_henke_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_uctbx_ext.so to cctbx_uctbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_bulk_solvent_ext.so to mmtbx_bulk_solvent_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_fonts_ext.so to gltbx_fonts_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_dtrek_ext.so to iotbx_dtrek_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_gl_ext.so to gltbx_gl_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_glu_ext.so to gltbx_glu_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_translation_search_ext.so to cctbx_translation_search_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_suffixtree_single_ext.so to scitbx_suffixtree_single_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_symmetry_search_ext.so to cctbx_symmetry_search_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_covariance_ext.so to cctbx_covariance_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_dsn6_map_ext.so to iotbx_dsn6_map_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_xplor_ext.so to iotbx_xplor_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_simage_ext.so to rstbx_simage_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_covalent_radii_ext.so to cctbx_eltbx_covalent_radii_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming fable_ext.so to fable_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_pdb_ext.so to iotbx_pdb_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_pair_interaction_ext.so to mmtbx_pair_interaction_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_format_image_ext.so to dxtbx_format_image_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_symmetry_constraints_ext.so to rstbx_symmetry_constraints_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_rational_ext.so to boost_rational_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_dssp_ext.so to mmtbx_dssp_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_connected_component_algorithm_ext.so to boost_adaptbx_graph_connected_component_algorithm_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming ccp4io_adaptbx_ext.so to ccp4io_adaptbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_glmtbx_ext.so to scitbx_glmtbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_tls_optimise_amplitudes_ext.so to mmtbx_tls_optimise_amplitudes_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_reference_coordinate_ext.so to mmtbx_reference_coordinate_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_ext.so to boost_adaptbx_graph_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming determine_unit_cell_ext.so to determine_unit_cell_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_multipolar_ext.so to cctbx_multipolar_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_model_ext.so to dxtbx_model_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_array_family_flex_ext.so to scitbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_rsr_ext.so to mmtbx_rsr_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_graphics_utils_ext.so to scitbx_graphics_utils_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_tiny_pse_ext.so to cctbx_eltbx_tiny_pse_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_array_family_flex_ext.so to rstbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_attenuation_coefficient_ext.so to cctbx_eltbx_attenuation_coefficient_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_linalg_ext.so to scitbx_linalg_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_math_ext.so to cctbx_math_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_cif_ext.so to iotbx_cif_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_masks_ext.so to mmtbx_masks_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_ext.so to dxtbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_ramachandran_restraints_ext.so to mmtbx_ramachandran_restraints_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_asa_ext.so to mmtbx_geometry_asa_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_sasaki_ext.so to cctbx_eltbx_sasaki_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_lstbx_normal_equations_ext.so to scitbx_lstbx_normal_equations_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_format_nexus_ext.so to dxtbx_format_nexus_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_max_lik_ext.so to mmtbx_max_lik_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming omptbx_ext.so to omptbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_scalepack_ext.so to iotbx_scalepack_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_french_wilson_ext.so to cctbx_french_wilson_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_tuple_ext.so to boost_tuple_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_shared_types_ext.so to mmtbx_geometry_shared_types_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_stl_map_ext.so to scitbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_random_ext.so to scitbx_random_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_minpack_ext.so to scitbx_minpack_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_maximum_clique_ext.so to boost_adaptbx_graph_maximum_clique_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_secondary_structure_ext.so to mmtbx_secondary_structure_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_primitive_ext.so to mmtbx_geometry_primitive_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_crystal_ext.so to cctbx_crystal_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_viewer_utils_ext.so to gltbx_viewer_utils_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_refinement_least_squares_ext.so to smtbx_refinement_least_squares_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_integration_ext.so to rstbx_integration_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_refinement_restraints_ext.so to smtbx_refinement_restraints_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_den_restraints_ext.so to mmtbx_den_restraints_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_validation_ramachandran_ext.so to mmtbx_validation_ramachandran_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_mtz_ext.so to iotbx_mtz_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_ab_initio_ext.so to smtbx_ab_initio_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_geometry_ext.so to cctbx_geometry_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_array_family_ext.so to smtbx_array_family_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_boost_thread_test_ext.so to boost_adaptbx_boost_thread_test_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_building_loop_closure_ext.so to mmtbx_building_loop_closure_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_tls_utils_ext.so to mmtbx_tls_utils_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_bandpass_ext.so to rstbx_bandpass_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_clash_ext.so to mmtbx_geometry_clash_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_sgtbx_asu_ext.so to cctbx_sgtbx_asu_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_cubicle_neighbors_ext.so to scitbx_cubicle_neighbors_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_maptbx_bcr_bcr_ext.so to cctbx_maptbx_bcr_bcr_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_dmtbx_ext.so to cctbx_dmtbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_probe_ext.so to mmtbx_probe_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_rigid_body_ext.so to scitbx_rigid_body_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_pdb_hierarchy_ext.so to iotbx_pdb_hierarchy_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_array_family_shared_ext.so to scitbx_array_family_shared_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_diffraction_fastbragg_ext.so to rstbx_diffraction_fastbragg_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_stl_map_ext.so to smtbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_python_hybrid_times_ext.so to boost_python_hybrid_times_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_asymmetric_map_ext.so to cctbx_asymmetric_map_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_tls_ext.so to mmtbx_tls_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_indexing_ext.so to mmtbx_geometry_indexing_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_maptbx_ext.so to cctbx_maptbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cbflib_ext.so to cbflib_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming regression_test_ext.so to regression_test_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_suffixtree_shared_ext.so to scitbx_suffixtree_shared_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_xray_observations_ext.so to cctbx_xray_observations_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_xray_scattering_ext.so to cctbx_eltbx_xray_scattering_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming annlib_ext.so to annlib_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_math_ext.so to scitbx_math_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_statistics_ext.so to cctbx_statistics_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_python_streambuf_test_ext.so to boost_adaptbx_python_streambuf_test_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_miller_ext.so to cctbx_miller_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_anharmonic_ext.so to cctbx_anharmonic_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_ccp4_map_ext.so to iotbx_ccp4_map_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_indexing_api_ext.so to rstbx_indexing_api_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_detectors_bruker_ext.so to iotbx_detectors_bruker_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_util_ext.so to gltbx_util_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_optional_ext.so to boost_optional_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_mosaic_ext.so to mmtbx_mosaic_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_wildcard_ext.so to iotbx_wildcard_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_wavelengths_ext.so to cctbx_eltbx_wavelengths_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_stl_set_ext.so to scitbx_stl_set_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_quadrics_ext.so to gltbx_quadrics_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_ext.so to rstbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_shelx_ext.so to iotbx_shelx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_graph_structure_comparison_ext.so to boost_adaptbx_graph_graph_structure_comparison_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_icsd_radii_ext.so to cctbx_eltbx_icsd_radii_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_chemical_elements_ext.so to cctbx_eltbx_chemical_elements_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_orientation_ext.so to cctbx_orientation_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_tls_decompose_ext.so to mmtbx_tls_decompose_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_fftpack_ext.so to scitbx_fftpack_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_clustering_algorithm_ext.so to boost_adaptbx_graph_clustering_algorithm_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_hydrogens_ext.so to mmtbx_hydrogens_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_iso_surface_ext.so to scitbx_iso_surface_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_utility_ext.so to boost_adaptbx_graph_utility_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_utils_ext.so to mmtbx_utils_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_ncs_ext.so to mmtbx_ncs_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_bpcx_detector_model_ext.so to rstbx_bpcx_detector_model_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_ncs_cartesian_restraints_ext.so to mmtbx_ncs_cartesian_restraints_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_scaling_ext.so to mmtbx_scaling_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_emma_ext.so to cctbx_emma_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_breadth_first_search_ext.so to boost_adaptbx_graph_breadth_first_search_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_alignment_ext.so to mmtbx_alignment_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_imageset_ext.so to dxtbx_imageset_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_geometry_restraints_ext.so to cctbx_geometry_restraints_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_adptbx_ext.so to cctbx_adptbx_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_rotamer_fit_ext.so to mmtbx_rotamer_fit_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_lbfgsb_ext.so to scitbx_lbfgsb_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_fp_fdp_ext.so to cctbx_eltbx_fp_fdp_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_adp_restraints_ext.so to cctbx_adp_restraints_ext.cpython-313-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_sparse_ext.so to scitbx_sparse_ext.cpython-313-loongarch64-linux-gnu.so D: dh_python3 fs:60: moving files from debian/python3-cctbx/usr/lib/python3.14/dist-packages to debian/python3-cctbx/usr/lib/python3/dist-packages/ D: dh_python3 tools:296: invoking: /usr/bin/python3.14 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:524: renaming dxtbx_masking_ext.so to dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_masks_ext.so to cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_neutron_ext.so to cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cma_es_ext.so to cma_es_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming std_pair_ext.so to std_pair_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_lbfgs_ext.so to scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_detectors_ext.so to iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_min_cut_max_flow_ext.so to boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_array_family_flex_ext.so to cctbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_refinement_constraints_ext.so to smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_dynamics_ext.so to mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming spotfinder_array_family_flex_ext.so to spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming spotfinder_dxtbx_ext.so to spotfinder_dxtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_flumpy.so to dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming spotfinder_hough_ext.so to spotfinder_hough_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_merging_ext.so to cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_xray_ext.so to cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_f_model_ext.so to mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_sgtbx_ext.so to cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_reduce_ext.so to mmtbx_reduce_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming spotfinder_distltbx_ext.so to spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_metric_ext.so to boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_stl_vector_ext.so to scitbx_stl_vector_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_sphere_surface_sampling_ext.so to mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_python_meta_ext.so to boost_python_meta_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_simulation_ext.so to rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_r3_utils_ext.so to scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_structure_factors_direct_ext.so to smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_wigner_ext.so to scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_henke_ext.so to cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_uctbx_ext.so to cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_bulk_solvent_ext.so to mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_fonts_ext.so to gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_dtrek_ext.so to iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_gl_ext.so to gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_glu_ext.so to gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_translation_search_ext.so to cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_suffixtree_single_ext.so to scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_symmetry_search_ext.so to cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_covariance_ext.so to cctbx_covariance_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_dsn6_map_ext.so to iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_xplor_ext.so to iotbx_xplor_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_simage_ext.so to rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_covalent_radii_ext.so to cctbx_eltbx_covalent_radii_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming fable_ext.so to fable_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_pdb_ext.so to iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_pair_interaction_ext.so to mmtbx_pair_interaction_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_format_image_ext.so to dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_symmetry_constraints_ext.so to rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_rational_ext.so to boost_rational_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_dssp_ext.so to mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_connected_component_algorithm_ext.so to boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming ccp4io_adaptbx_ext.so to ccp4io_adaptbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_glmtbx_ext.so to scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_tls_optimise_amplitudes_ext.so to mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_reference_coordinate_ext.so to mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_ext.so to boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming determine_unit_cell_ext.so to determine_unit_cell_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_multipolar_ext.so to cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_model_ext.so to dxtbx_model_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_array_family_flex_ext.so to scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_rsr_ext.so to mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_graphics_utils_ext.so to scitbx_graphics_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_tiny_pse_ext.so to cctbx_eltbx_tiny_pse_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_array_family_flex_ext.so to rstbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_attenuation_coefficient_ext.so to cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_linalg_ext.so to scitbx_linalg_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_math_ext.so to cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_cif_ext.so to iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_masks_ext.so to mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_ext.so to dxtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_ramachandran_restraints_ext.so to mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_asa_ext.so to mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_sasaki_ext.so to cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_lstbx_normal_equations_ext.so to scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_format_nexus_ext.so to dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_max_lik_ext.so to mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming omptbx_ext.so to omptbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_scalepack_ext.so to iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_french_wilson_ext.so to cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_tuple_ext.so to boost_tuple_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_shared_types_ext.so to mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_stl_map_ext.so to scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_random_ext.so to scitbx_random_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_minpack_ext.so to scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_maximum_clique_ext.so to boost_adaptbx_graph_maximum_clique_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_secondary_structure_ext.so to mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_primitive_ext.so to mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_crystal_ext.so to cctbx_crystal_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_viewer_utils_ext.so to gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_refinement_least_squares_ext.so to smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_integration_ext.so to rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_refinement_restraints_ext.so to smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_den_restraints_ext.so to mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_validation_ramachandran_ext.so to mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_mtz_ext.so to iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_ab_initio_ext.so to smtbx_ab_initio_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_geometry_ext.so to cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_array_family_ext.so to smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_boost_thread_test_ext.so to boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_building_loop_closure_ext.so to mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_tls_utils_ext.so to mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_bandpass_ext.so to rstbx_bandpass_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_clash_ext.so to mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_sgtbx_asu_ext.so to cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_cubicle_neighbors_ext.so to scitbx_cubicle_neighbors_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_maptbx_bcr_bcr_ext.so to cctbx_maptbx_bcr_bcr_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_dmtbx_ext.so to cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_probe_ext.so to mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_rigid_body_ext.so to scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_pdb_hierarchy_ext.so to iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_array_family_shared_ext.so to scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_diffraction_fastbragg_ext.so to rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming smtbx_stl_map_ext.so to smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_python_hybrid_times_ext.so to boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_asymmetric_map_ext.so to cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_tls_ext.so to mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_geometry_indexing_ext.so to mmtbx_geometry_indexing_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_maptbx_ext.so to cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cbflib_ext.so to cbflib_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming regression_test_ext.so to regression_test_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_suffixtree_shared_ext.so to scitbx_suffixtree_shared_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_xray_observations_ext.so to cctbx_xray_observations_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_xray_scattering_ext.so to cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming annlib_ext.so to annlib_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_math_ext.so to scitbx_math_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_statistics_ext.so to cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_python_streambuf_test_ext.so to boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_miller_ext.so to cctbx_miller_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_anharmonic_ext.so to cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_ccp4_map_ext.so to iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_indexing_api_ext.so to rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_detectors_bruker_ext.so to iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_util_ext.so to gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_optional_ext.so to boost_optional_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_mosaic_ext.so to mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_wildcard_ext.so to iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_wavelengths_ext.so to cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_stl_set_ext.so to scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming gltbx_quadrics_ext.so to gltbx_quadrics_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_ext.so to rstbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming iotbx_shelx_ext.so to iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_graph_structure_comparison_ext.so to boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_icsd_radii_ext.so to cctbx_eltbx_icsd_radii_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_chemical_elements_ext.so to cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_orientation_ext.so to cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_tls_decompose_ext.so to mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_fftpack_ext.so to scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_clustering_algorithm_ext.so to boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_hydrogens_ext.so to mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_iso_surface_ext.so to scitbx_iso_surface_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_utility_ext.so to boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_utils_ext.so to mmtbx_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_ncs_ext.so to mmtbx_ncs_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming rstbx_bpcx_detector_model_ext.so to rstbx_bpcx_detector_model_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_ncs_cartesian_restraints_ext.so to mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_scaling_ext.so to mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_emma_ext.so to cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming boost_adaptbx_graph_breadth_first_search_ext.so to boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_alignment_ext.so to mmtbx_alignment_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming dxtbx_imageset_ext.so to dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_geometry_restraints_ext.so to cctbx_geometry_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_adptbx_ext.so to cctbx_adptbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming mmtbx_rotamer_fit_ext.so to mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_lbfgsb_ext.so to scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_eltbx_fp_fdp_ext.so to cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming cctbx_adp_restraints_ext.so to cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:524: renaming scitbx_sparse_ext.so to scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fab_elbow_angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_sizes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.split_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.altloc_remediate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.hbond): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_windows_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_model_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_full_command_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_remediator): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bash): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_variable_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reindex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.symmetry_search): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_cif_conversion): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.inexact): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.index): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.gdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/sphinx.build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/samosa.scale): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.unpack_in_sources): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_old_style_classes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.valgrind): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_pickled_function): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/distl.signal_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.compare_datasets): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.split_data_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_reserved_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_not_show_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_structure_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.space_group_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_does_not_contain_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.simple_map_coefficients): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.wx_display): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_available_slots): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_matching_images): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_sphinx_html): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/fable.insert_write_at_start_of_each_procedure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.feature_enhanced_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.find_distances): cannot parse binary file D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.divide_by_zero): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_tests): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.printenv): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.int_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.unicode_examples): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.tst_memory): cannot parse binary file D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.super): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reduce_cryoem_resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_centers_of_mass): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_pythonpath): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.parallel_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validation_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fmodel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/annlib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.seconds_since_the_epoch): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.quantum_interface): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.reindent): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/fable.fem_include_search_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.create): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.inspect_r_free_flags): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.r_factor_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_modules): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.qttbx.view_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.bfactor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_source_files_sorted_by_size): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_r_factors_by_shell): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.sort_atoms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.valence_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_options): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.biomt_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.cod_select_and_pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.select_best_starting_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.plot_detector_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remote_processing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prune_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.install_format): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_as_fasta): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.density_modification): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_install_script_bat): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_miller_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.analyse_code_comments): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_include_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_cctbx_bundle_for_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_under_build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.sdb_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.subgroups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.transfer_crystal_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bibtex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.try_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.patterson_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.plot_anomalous_scattering): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.electrons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cns_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maximum_entropy_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numpy_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.aev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry): cannot parse binary file D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.diffuse): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.link_as_geometry_restraints_edits): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups): cannot parse binary file D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.poscar_as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_systematic_absences): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.massage_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_registry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_ends_with): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.arginine_geometry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prepare_pdb_deposition): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage_gui): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bootstrap): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.display_parallax_correction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ss_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.TAAM_minus_IAM): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.TAAM_minus_IAM): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rigid_bond_test): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.blast_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.lattice_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.probescore_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_file_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/distl.find_active_area): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.apply_tapenade_hints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_completion_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.polder): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_as_xyz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.emringer_score): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dano_as_amplitudes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.help): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites): cannot parse binary file D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/distl.sweep_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_accumulation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_repository_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_atoms_by_name): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.xtrapol8): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.any2unix): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mon_lib_cif_triage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.debugging.hydrogenate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.precession_view): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.latex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.get_pubmed_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.print_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.absolute_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.reflection_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost.lcm): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.crystal_symmetry_from_any): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.estimate_bijvoet_ratio): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mask): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.depends_on): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.validate_H): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_contains_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz2map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_in_repositories): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_dist): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.getting_started): cannot parse binary file D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_untested): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.search_pdb_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.chunk): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_cablam_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.validate_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.b_factor_stats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/fable.cout): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xmanip): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.visualize_r_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.box_around_molecule): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_platform_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_residue_in_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_commands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.multiplicity_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dtrek.to_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.distance_difference): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.water_b_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.detector_superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.next_gen_atom_typing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.pdflatex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.holton_geometry_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.nequal): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/distl.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phasertng.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.any2nexus): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sisa): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_mask_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.loggraph): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.add_conformations): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.check_libcpp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/labelit.png): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.debug_memory): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_reticular_twin_laws): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_date_and_time): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mp_geo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_header): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.raise_exception_for_testing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdbtools): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cbf.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.dlsnxs2cbf): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.apply_ncs_to_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/distl.mp_spotfinder_server_read_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_as_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.wait_for_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.join_fragment_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.dump_as_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_process): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.easy_qsub): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.insert_scale_records): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.epydoc_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_rotarama_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.explore_metric_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.probe2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.models_as_chains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.debugging.riding): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.euclidean_model_matching): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cbf_read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_ext): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.refresh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.build_phil_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.nested_cpp_loops_with_check_signals): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_regression.test_nightly): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.csh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.dynamics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.dtrace): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.structure_factor_timings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.geometry_minimization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.qscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.segment_and_split_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.auto_sharpen): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_exp_times): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.hierarchy): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.radial_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.anom_refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.web.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/fable.read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.model_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_env): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.double_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.py_compile_all): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.tcsh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wavelength_units): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.mtrix_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_matching_formats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/fable.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.show_connectivity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.ligand_restraints_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clean_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.benchmark_refinement): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_lib_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fake_f_obs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_qstat_counts): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.comparama): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.solver): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_blobs): cannot parse binary file D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.path_utility): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.verify_mon_lib_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_host_and_user): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_bin_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wxpython): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.read_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_all_on_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.make_install_HKLviewer_ChimeraX): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.form_factor_query): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib): cannot parse binary file D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_calls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_binary_bundle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.env_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.extract_code_from_txt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.generate_error_h): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.exec): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.nonbonded_overlaps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce_cryoem_resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.export_scalepack_unmerged): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cc_star): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numeric_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.resource_monitor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_atom_selection): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_mac_app): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.segmentation_fault): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fobs_minus_fobs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_tests_parallel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.refine_anomalous_substructure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.distance_least_squares): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/samosa.join): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reciprocal_space_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.get_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.where_is_that_cif_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.table_one): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.git_avoid_merges): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_tree): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.prime_factors_of): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/fable.split): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_diff_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.add_docstrings_with_ai): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.flip_symmetric_amino_acids): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.xplor.map.show_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.perigee): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.scons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.configure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.anomalous_differences_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.remove_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.csv_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.explore_completeness): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.matthews): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_unzipsfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.grow_density): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_number_of_processors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.masks): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.f000): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.holton_geometry_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_box): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports_crude): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_module_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_sys_executable): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_correlation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clear_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install_conda): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.eltbx.show_fp_fdp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.overload): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.helix_sheet_recs_as_pdb_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/boost.gcd): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_pdb_mmcif_problems): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_restraints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_but_no_repr): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_model_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_tls_groups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rank_scale_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sort_hetatms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ribbons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fem): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.brehm_diederichs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/phenix.example_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/distl.thin_client): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:115: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.saturation): doesn't look like a shebang: #! /bin/sh D: dh_python3 fs:199: Writing INSTALLER in debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info D: dh_python3 fs:210: Deleting RECORD in debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info D: dh_python3 fs:199: Writing INSTALLER in debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.28.0.dist-info D: dh_python3 fs:210: Deleting RECORD in debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.28.0.dist-info D: dh_python3 fs:414: package python3-cctbx details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info/METADATA', 'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.28.0.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.14'), Version('3.13')}, 'ext_stableabi': set(), 'ext_no_version': set()} D: dh_python3 depends:148: generating dependencies for package python3-cctbx D: dh_python3 pydist:237: trying to find dependency for hdf5plugin (python=None) D: dh_python3 pydist:281: dependency: module hdf5plugin is known to pydist: [PyDist(name='hdf5plugin', versions={Version('3.14'), Version('3.13')}, dependency='python3-hdf5plugin', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for h5py (python=None) D: dh_python3 pydist:281: dependency: module h5py is known to pydist: [PyDist(name='h5py', versions={Version('3.14'), Version('3.13')}, dependency='python3-h5py', standard='PEP386', rules=[]), PyDist(name='h5py', versions={Version('3.14'), Version('3.13')}, dependency='python3-h5py', standard=None, rules=[])] D: dh_python3 pydist:358: dependency: included in build-deps with limits D: dh_python3 pydist:237: trying to find dependency for numpy (python=None) D: dh_python3 pydist:281: dependency: module numpy is known to pydist: [PyDist(name='numpy', versions={Version('3.14'), Version('3.13')}, dependency='python3-numpy', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:281: dependency: module matplotlib is known to pydist: [PyDist(name='matplotlib', versions={Version('3.14'), Version('3.13')}, dependency='python3-matplotlib', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for mrcfile (python=None) D: dh_python3 pydist:281: dependency: module mrcfile is known to pydist: [PyDist(name='mrcfile', versions={Version('3.14'), Version('3.13')}, dependency='python3-mrcfile', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for natsort (python=None) D: dh_python3 pydist:281: dependency: module natsort is known to pydist: [PyDist(name='natsort', versions={Version('3.14'), Version('3.13')}, dependency='python3-natsort', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for nxmx (python=None) D: dh_python3 pydist:281: dependency: module nxmx is known to pydist: [PyDist(name='nxmx', versions={Version('3.14'), Version('3.13')}, dependency='python3-nxmx', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for ordered_set (python=None) D: dh_python3 pydist:281: dependency: module ordered-set is known to pydist: [PyDist(name='ordered-set', versions={Version('3.14'), Version('3.13')}, dependency='python3-ordered-set', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for pint (python=None) D: dh_python3 pydist:281: dependency: module pint is known to pydist: [PyDist(name='pint', versions={Version('3.14'), Version('3.13')}, dependency='python3-pint', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for procrunner (python=None) D: dh_python3 pydist:281: dependency: module procrunner is known to pydist: [PyDist(name='procrunner', versions={Version('3.14'), Version('3.13')}, dependency='python3-procrunner', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for pymol (python=None) D: dh_python3 pydist:281: dependency: module pymol is known to pydist: [PyDist(name='pymol', versions={Version('3.14'), Version('3.13')}, dependency='python3-pymol', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for requests (python=None) D: dh_python3 pydist:281: dependency: module requests is known to pydist: [PyDist(name='requests', versions={Version('3.14'), Version('3.13')}, dependency='python3-requests', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for scipy (python=None) D: dh_python3 pydist:281: dependency: module scipy is known to pydist: [PyDist(name='scipy', versions={Version('3.14'), Version('3.13')}, dependency='python3-scipy', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for six (python=None) D: dh_python3 pydist:281: dependency: module six is known to pydist: [PyDist(name='six', versions={Version('3.14'), Version('3.13')}, dependency='python3-six', standard='PEP386', rules=[]), PyDist(name='six', versions={Version('3.14'), Version('3.13')}, dependency='python3-six', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for PIL (python=None) D: dh_python3 pydist:281: dependency: module pil is known to pydist: [PyDist(name='pil', versions={Version('3.14'), Version('3.13')}, dependency='python3-pil', standard=None, rules=[]), PyDist(name='pil', versions={Version('3.14'), Version('3.13')}, dependency='python3-pil', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for tqdm (python=None) D: dh_python3 pydist:281: dependency: module tqdm is known to pydist: [PyDist(name='tqdm', versions={Version('3.14'), Version('3.13')}, dependency='python3-tqdm', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for wxPython (python=None) D: dh_python3 pydist:281: dependency: module wxpython is known to pydist: [PyDist(name='wxpython', versions={Version('3.14'), Version('3.13')}, dependency='python3-wxgtk4.0', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 depends:330: D={'python3-pil', 'python3-requests', 'python3-procrunner', 'python3-tqdm', 'python3-pymol', 'python3-numpy', 'python3-six', 'python3 (<< 3.15)', 'python3-natsort', 'python3 (>= 3.13~)', 'python3-ordered-set', 'python3:any', 'python3-mrcfile', 'python3-h5py (>= 3)', 'python3-nxmx', 'python3-wxgtk4.0', 'python3-hdf5plugin', 'python3-scipy', 'python3-matplotlib', 'python3-pint'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cctbx/usr/share/lintian/overrides install -p -m0644 debian/python3-cctbx.lintian-overrides debian/python3-cctbx/usr/share/lintian/overrides/python3-cctbx dh_perl -a -O--buildsystem=pybuild rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' dh_auto_build -- -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" pybuild --build -i python{version} -p "3.14 3.13" -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" --parallel=8 I: pybuild base:385: dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python3.14/include rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so ln -s libscitbx_slatec.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so ln -s libmmtbx_masks.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so ln -s libiotbx_mtz.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libspotfinder.so ln -s libspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libspotfinder.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so ln -s libiotbx_xplor.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libann_adaptor.so ln -s libann_adaptor.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libann_adaptor.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/librstbx.so ln -s librstbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/librstbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libomptbx.so ln -s libomptbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libomptbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so ln -s libmmtbx_tls.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so ln -s libscitbx_boost_python.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so ln -s libscitbx_minpack.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so ln -s libasymmetric_map.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libccp4io.so ln -s libccp4io.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libccp4io.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so ln -s libdxtbxspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcbf-private.so ln -s libcbf-private.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcbf-private.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx.so ln -s libcctbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so ln -s libiotbx_pdb.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so ln -s libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so ln -s libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so install -m0755 -d debian/libcctbx-dev/usr/lib/cctbx/python3.14 rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.14/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.14/include I: pybuild base:385: dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python3.13/include rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so ln -s libscitbx_slatec.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so ln -s libmmtbx_masks.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so ln -s libiotbx_mtz.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libspotfinder.so ln -s libspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libspotfinder.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so ln -s libiotbx_xplor.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libann_adaptor.so ln -s libann_adaptor.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libann_adaptor.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/librstbx.so ln -s librstbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/librstbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libomptbx.so ln -s libomptbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libomptbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so ln -s libmmtbx_tls.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so ln -s libscitbx_boost_python.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so ln -s libscitbx_minpack.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so ln -s libasymmetric_map.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libccp4io.so ln -s libccp4io.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libccp4io.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so ln -s libdxtbxspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcbf-private.so ln -s libcbf-private.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcbf-private.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx.so ln -s libcctbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so ln -s libiotbx_pdb.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so ln -s libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so ln -s libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.14/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.14/include install -m0755 -d debian/libcctbx-dev/usr/lib/cctbx/python3.13 rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.13/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.13/include make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' dh_strip_nondeterminism -a -O--buildsystem=pybuild Using 1778336580 as canonical time Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/C_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Se_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O2-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ebi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ncbi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/C_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/P_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/S_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo5+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/N_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/T_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/D1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/B_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/D_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/S_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/P_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/N_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/T1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo6+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/B_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Se_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg_wk1995.json.gz using File::StripNondeterminism::handlers::gzip dh_compress -a -O--buildsystem=pybuild cd debian/libcctbx0 cd debian/python3-cctbx cd debian/libcctbx-dev chmod a-x usr/share/doc/libcctbx0/changelog usr/share/doc/libcctbx0/changelog.Debian chmod a-x usr/share/doc/libcctbx-dev/changelog usr/share/doc/libcctbx-dev/changelog.Debian chmod a-x usr/share/doc/python3-cctbx/changelog usr/share/doc/python3-cctbx/changelog.Debian gzip -9nf usr/share/doc/libcctbx0/changelog usr/share/doc/libcctbx0/changelog.Debian gzip -9nf usr/share/doc/libcctbx-dev/changelog usr/share/doc/libcctbx-dev/changelog.Debian gzip -9nf usr/share/doc/python3-cctbx/changelog usr/share/doc/python3-cctbx/changelog.Debian cd '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' cd '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' cd '/build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1' dh_fixperms -a -O--buildsystem=pybuild find debian/libcctbx0 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cctbx ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx0/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx0 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcctbx-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-cctbx/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cctbx/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cctbx/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cctbx/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu dwz -mdebian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu/libcctbx0.debug -M/usr/lib/debug/.dwz/loongarch64-linux-gnu/libcctbx0.debug -- debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 install -m0755 -d debian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu dwz -mdebian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu/python3-cctbx.debug -M/usr/lib/debug/.dwz/loongarch64-linux-gnu/python3-cctbx.debug -- debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/lib/cctbx/python3.13/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.13/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-loongarch64-linux-gnu.so objcopy --compress-debug-sections debian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu/libcctbx0.debug chmod 0644 -- debian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu/libcctbx0.debug objcopy --compress-debug-sections debian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu/python3-cctbx.debug chmod 0644 -- debian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu/python3-cctbx.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/67/5f7172cf9a1df6016f5c67589f18c9bde2aef4.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/67/5f7172cf9a1df6016f5c67589f18c9bde2aef4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/67/5f7172cf9a1df6016f5c67589f18c9bde2aef4.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/d6ef52cd6769616b9c28d33d8374903788e878.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/98/b10e90acc9bd942670f0ddb48e302ea37a51a3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/d6ef52cd6769616b9c28d33d8374903788e878.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/98/b10e90acc9bd942670f0ddb48e302ea37a51a3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/98/b10e90acc9bd942670f0ddb48e302ea37a51a3.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/d6ef52cd6769616b9c28d33d8374903788e878.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/6d/83ed6defe14771ce952e0a1ee290f017221ff0.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/187ee57f3feb220df32036aca16f24c66c0a1a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/187ee57f3feb220df32036aca16f24c66c0a1a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/187ee57f3feb220df32036aca16f24c66c0a1a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/253bae15fbe93215d67abf5ed6fdb4b3f5b0cb.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/6d/83ed6defe14771ce952e0a1ee290f017221ff0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/6d/83ed6defe14771ce952e0a1ee290f017221ff0.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/22 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/22/8dae0f7f902b3d342d45bddaee0eb47a701802.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/253bae15fbe93215d67abf5ed6fdb4b3f5b0cb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/253bae15fbe93215d67abf5ed6fdb4b3f5b0cb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/fbe6cf79342e53c8c5dfb1cc66f90d2ba24ae2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/fbe6cf79342e53c8c5dfb1cc66f90d2ba24ae2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/fbe6cf79342e53c8c5dfb1cc66f90d2ba24ae2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/70 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/70/bb440ff4256c8da9fddc3d880d6060ae45128d.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/22/8dae0f7f902b3d342d45bddaee0eb47a701802.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/70/bb440ff4256c8da9fddc3d880d6060ae45128d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/70/bb440ff4256c8da9fddc3d880d6060ae45128d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/22/8dae0f7f902b3d342d45bddaee0eb47a701802.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3/fd49b7da647de5afb59c71523d263f14ec0f27.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/69 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/69/7b41bff23a3412fbc452c012abc92e86242a6b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3/fd49b7da647de5afb59c71523d263f14ec0f27.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3/fd49b7da647de5afb59c71523d263f14ec0f27.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-313-loongarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/69/7b41bff23a3412fbc452c012abc92e86242a6b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/bd4980e6c8a02f96bb19afb099867a1d829326.debug objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/69/7b41bff23a3412fbc452c012abc92e86242a6b.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/bd4980e6c8a02f96bb19afb099867a1d829326.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/bd4980e6c8a02f96bb19afb099867a1d829326.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a6/234d3090a24f8dc42f77e2d15f1f8dabb9b842.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a6/234d3090a24f8dc42f77e2d15f1f8dabb9b842.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/a6/234d3090a24f8dc42f77e2d15f1f8dabb9b842.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/9e27ae614d965165c6d034c91f369ec66abb86.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/68/25043eea58727d75da2aedc032175d1202d448.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/68/25043eea58727d75da2aedc032175d1202d448.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/68/25043eea58727d75da2aedc032175d1202d448.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c9/d2d37b93b3708239aee03ba6733d66e1da7ad4.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c9/d2d37b93b3708239aee03ba6733d66e1da7ad4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c9/d2d37b93b3708239aee03ba6733d66e1da7ad4.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f2/8c0075321b130a643923e336476b6439641c15.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f2/8c0075321b130a643923e336476b6439641c15.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f2/8c0075321b130a643923e336476b6439641c15.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fe objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fe/6bc0fdc3cbe9c7d52091f04e9d41bff854d23b.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fe/6bc0fdc3cbe9c7d52091f04e9d41bff854d23b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/9e27ae614d965165c6d034c91f369ec66abb86.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/fe/6bc0fdc3cbe9c7d52091f04e9d41bff854d23b.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/9e27ae614d965165c6d034c91f369ec66abb86.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b1 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b1/e10c9892b9ec2a2eb6730b340bba9824bd41ca.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/2692206229915ea49f3128de2c4c3df9ac3831.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b1/e10c9892b9ec2a2eb6730b340bba9824bd41ca.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b1/e10c9892b9ec2a2eb6730b340bba9824bd41ca.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/2692206229915ea49f3128de2c4c3df9ac3831.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/2692206229915ea49f3128de2c4c3df9ac3831.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/99 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/99/ca4929a74b4af956335a178be3bee32d1461ba.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/21508a80b12c495132149df4bdd2fd29d94462.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/21508a80b12c495132149df4bdd2fd29d94462.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/60/21508a80b12c495132149df4bdd2fd29d94462.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/577d04c854e5ac24d7fcac9c7bb9df1a3b956c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/577d04c854e5ac24d7fcac9c7bb9df1a3b956c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-313-loongarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/99/ca4929a74b4af956335a178be3bee32d1461ba.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/577d04c854e5ac24d7fcac9c7bb9df1a3b956c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/99/ca4929a74b4af956335a178be3bee32d1461ba.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76/12591857be027d3738edf56722ea27b32c1871.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/65 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/65/c270dbe10e066fb3860bb59a71dad640a0d8a3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76/12591857be027d3738edf56722ea27b32c1871.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/76/12591857be027d3738edf56722ea27b32c1871.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/e284cc36205475d1a2afa30fc3e19dcbdfc0a0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/e284cc36205475d1a2afa30fc3e19dcbdfc0a0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/e284cc36205475d1a2afa30fc3e19dcbdfc0a0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-313-loongarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/65/c270dbe10e066fb3860bb59a71dad640a0d8a3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/a0e1225d669913eebc6b88540dfc7260c4d6e1.debug objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/65/c270dbe10e066fb3860bb59a71dad640a0d8a3.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b1 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b1/2e5c79bc3290588a80bb887d499b7e2457e293.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/a0e1225d669913eebc6b88540dfc7260c4d6e1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/08/a0e1225d669913eebc6b88540dfc7260c4d6e1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b1/2e5c79bc3290588a80bb887d499b7e2457e293.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/b1/2e5c79bc3290588a80bb887d499b7e2457e293.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f/1f5e0de39fea2717cf5bc8175224f6d21ccaa8.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e2/3c0bc48b05d34a971982fbc9ef2b211b401e94.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f/1f5e0de39fea2717cf5bc8175224f6d21ccaa8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-313-loongarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e2/3c0bc48b05d34a971982fbc9ef2b211b401e94.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e2/3c0bc48b05d34a971982fbc9ef2b211b401e94.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f/1f5e0de39fea2717cf5bc8175224f6d21ccaa8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/16560bcbe03f6ef1a4b5e0f4da56a51b7b8993.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2b objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2b/d78866d0b3aacd4294a144818d5a4b36dbcac9.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2b/d78866d0b3aacd4294a144818d5a4b36dbcac9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2b/d78866d0b3aacd4294a144818d5a4b36dbcac9.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0f objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0f/39e3d2996f54942c8be9e0ea8c3e261bfb049a.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0f/39e3d2996f54942c8be9e0ea8c3e261bfb049a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/16560bcbe03f6ef1a4b5e0f4da56a51b7b8993.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/16560bcbe03f6ef1a4b5e0f4da56a51b7b8993.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0f/39e3d2996f54942c8be9e0ea8c3e261bfb049a.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f1/3517ee46e247d027750f50da64459ca0ea3c01.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f1/3517ee46e247d027750f50da64459ca0ea3c01.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/b91ab1ea03e96ba24029311222e7bf76e6a72e.debug objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f1/3517ee46e247d027750f50da64459ca0ea3c01.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5b objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5b/c0e9055995ef7fb689c2efda2d58609988e8b6.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5b/c0e9055995ef7fb689c2efda2d58609988e8b6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/5b/c0e9055995ef7fb689c2efda2d58609988e8b6.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libcctbx0/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libcctbx0/usr/lib/debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc ln -s libcctbx0 debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc/libcctbx0-dbgsym install -m0755 -d debian/.debhelper/libcctbx0 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/b91ab1ea03e96ba24029311222e7bf76e6a72e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/b91ab1ea03e96ba24029311222e7bf76e6a72e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/e76d56ec5e204e6dc0f3ccb5e04961839296af.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/e76d56ec5e204e6dc0f3ccb5e04961839296af.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/e76d56ec5e204e6dc0f3ccb5e04961839296af.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/dda6b8c460d8983b77f9c62a56e3c32873b0b8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/dda6b8c460d8983b77f9c62a56e3c32873b0b8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/dda6b8c460d8983b77f9c62a56e3c32873b0b8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46/301ffa3b2067b911a5869205a91b2386df6f17.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46/301ffa3b2067b911a5869205a91b2386df6f17.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46/301ffa3b2067b911a5869205a91b2386df6f17.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/fc9ec81e85f0e1119f9dd206e9a67c0d720681.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/fc9ec81e85f0e1119f9dd206e9a67c0d720681.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85/fc9ec81e85f0e1119f9dd206e9a67c0d720681.debug debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/6a24d46305af1c23aee93b5ff9aa2734baef15.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/6a24d46305af1c23aee93b5ff9aa2734baef15.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/6a24d46305af1c23aee93b5ff9aa2734baef15.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/b3a89200316a660a3cf7d7d9c869aa5313a554.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/b3a89200316a660a3cf7d7d9c869aa5313a554.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/b3a89200316a660a3cf7d7d9c869aa5313a554.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/4fd1635074da4c844faa61d660377b10fcfcb9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/4fd1635074da4c844faa61d660377b10fcfcb9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/4fd1635074da4c844faa61d660377b10fcfcb9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/34d5e66a86921ad4a6a97cf40250d3f4df19c3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/34d5e66a86921ad4a6a97cf40250d3f4df19c3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a3/34d5e66a86921ad4a6a97cf40250d3f4df19c3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/48feb5d3a53132d758ea4702df2cfb3dfa9d17.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/48feb5d3a53132d758ea4702df2cfb3dfa9d17.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/48feb5d3a53132d758ea4702df2cfb3dfa9d17.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/a9de0cb3babd2ea8c2c73eb68dfd6470ab4bea.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/a9de0cb3babd2ea8c2c73eb68dfd6470ab4bea.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/a9de0cb3babd2ea8c2c73eb68dfd6470ab4bea.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/98f4c0d3fe4fad319c5fef35c38fe427321e1e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/98f4c0d3fe4fad319c5fef35c38fe427321e1e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/98f4c0d3fe4fad319c5fef35c38fe427321e1e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/73f575e1feea3fabdd8d33021f1a2bd273aa23.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/5148dba69afce9ffb04e667da9fae4d1949342.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/5148dba69afce9ffb04e667da9fae4d1949342.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/3e1b313e2fafc04cb0d0a7b6129a2218a142f4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/3e1b313e2fafc04cb0d0a7b6129a2218a142f4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/3e1b313e2fafc04cb0d0a7b6129a2218a142f4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5d/f1e7856db2fcc639923c155d468a31e823c89d.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/f4f7ba5d6a4fc20d6f758940d9f47f6ff2441c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/f4f7ba5d6a4fc20d6f758940d9f47f6ff2441c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8b/93b385a704755150c4da3fce037de46910d95f.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/43/8df5bd3769070bbd61f44851708cd7173f30e1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/43/8df5bd3769070bbd61f44851708cd7173f30e1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/184709287ccdafc53d10475ce162c2b997e438.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/184709287ccdafc53d10475ce162c2b997e438.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/54/184709287ccdafc53d10475ce162c2b997e438.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/9268ac0d386ae766c3e7d84303f1e910e27890.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/ea3f727d7b2240486900c180bb061d8047c10c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/ea3f727d7b2240486900c180bb061d8047c10c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/4e913135c5cedcd8d9c41d2becd8ba68410e2f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/4e913135c5cedcd8d9c41d2becd8ba68410e2f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ed/4e913135c5cedcd8d9c41d2becd8ba68410e2f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/e449922126d77507f20eeaf68b2a3f12f92312.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/e449922126d77507f20eeaf68b2a3f12f92312.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f4/e449922126d77507f20eeaf68b2a3f12f92312.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/e9b81d19b595413937602167db9ec304e58476.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/e9b81d19b595413937602167db9ec304e58476.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/e9b81d19b595413937602167db9ec304e58476.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/74 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/74/f3a15d71c59b2c653e7fcea4bbdc73c736dfbe.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/74/f3a15d71c59b2c653e7fcea4bbdc73c736dfbe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/74/f3a15d71c59b2c653e7fcea4bbdc73c736dfbe.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/7660fdcbc9498daf1a980a5525e67c01b004ac.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/7660fdcbc9498daf1a980a5525e67c01b004ac.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bf/7660fdcbc9498daf1a980a5525e67c01b004ac.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/2ba1a88d1d5ac477eb780fe8026b0b473858c7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/2ba1a88d1d5ac477eb780fe8026b0b473858c7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/2ba1a88d1d5ac477eb780fe8026b0b473858c7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/6c74011902ecd1285ad8d4b9b5ea1f276b31c9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/6c74011902ecd1285ad8d4b9b5ea1f276b31c9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/6c74011902ecd1285ad8d4b9b5ea1f276b31c9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/1113f937d9bf2b1e3a5d1d5c023ec5fff63085.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/1113f937d9bf2b1e3a5d1d5c023ec5fff63085.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/1113f937d9bf2b1e3a5d1d5c023ec5fff63085.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/a2dff7bede713fe4b5034e44314406e216187d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/a2dff7bede713fe4b5034e44314406e216187d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/a2dff7bede713fe4b5034e44314406e216187d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/761c3aebc2121e3d2dd62b506a5eb6340e9ad5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/761c3aebc2121e3d2dd62b506a5eb6340e9ad5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/761c3aebc2121e3d2dd62b506a5eb6340e9ad5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/df9feab7b02c92e64868f8c745382d5dee1770.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/df9feab7b02c92e64868f8c745382d5dee1770.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff/df9feab7b02c92e64868f8c745382d5dee1770.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/d0d962f4589f982fe1618c7ba29efbb4c0cd9b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/d0d962f4589f982fe1618c7ba29efbb4c0cd9b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/d0d962f4589f982fe1618c7ba29efbb4c0cd9b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/c71aa567489eaeb6e6436f5946166c4e2b4a6b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/c71aa567489eaeb6e6436f5946166c4e2b4a6b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/c71aa567489eaeb6e6436f5946166c4e2b4a6b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2/0028cff03237d989984ba0cefb22e3847148c7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2/0028cff03237d989984ba0cefb22e3847148c7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2/0028cff03237d989984ba0cefb22e3847148c7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/ebc426ff7837e571f61c233e28885ab7b6cc04.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/ebc426ff7837e571f61c233e28885ab7b6cc04.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/ebc426ff7837e571f61c233e28885ab7b6cc04.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/308f3a32b14ae8e62ff5c74cc8cfa732ea73be.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/308f3a32b14ae8e62ff5c74cc8cfa732ea73be.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d6/308f3a32b14ae8e62ff5c74cc8cfa732ea73be.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/8af8c80165d4fea4b6ce297c7f0ee49650cc81.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/8af8c80165d4fea4b6ce297c7f0ee49650cc81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/8af8c80165d4fea4b6ce297c7f0ee49650cc81.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02/13364f64a5e1c4940625a18d2f78b97c9c917b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02/13364f64a5e1c4940625a18d2f78b97c9c917b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02/13364f64a5e1c4940625a18d2f78b97c9c917b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/ccebcae334493bfdfaa1e7637218a34fdbe2db.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/ccebcae334493bfdfaa1e7637218a34fdbe2db.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/ccebcae334493bfdfaa1e7637218a34fdbe2db.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/ab25d8ddecf98782f64cc2a8970c2d1a710d4f.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/494c4635141c0a0abce228d16fb60db573257f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/494c4635141c0a0abce228d16fb60db573257f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f/bc8e1baa3a7583d303ce6f4b0297b745520aaf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f/bc8e1baa3a7583d303ce6f4b0297b745520aaf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f/bc8e1baa3a7583d303ce6f4b0297b745520aaf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/c294207095ca439f60c2ab1c0b547917ec89da.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/c294207095ca439f60c2ab1c0b547917ec89da.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/c294207095ca439f60c2ab1c0b547917ec89da.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/a0363bf2005edba947ee652be7ce0fc692592d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/a0363bf2005edba947ee652be7ce0fc692592d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/a0363bf2005edba947ee652be7ce0fc692592d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/180fa3a9e0e07f05be8bcdd8c1b264fc1fa315.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/180fa3a9e0e07f05be8bcdd8c1b264fc1fa315.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/180fa3a9e0e07f05be8bcdd8c1b264fc1fa315.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/28a9bc7e0684c6f8ff488059d5602c3c78e229.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/28a9bc7e0684c6f8ff488059d5602c3c78e229.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/28a9bc7e0684c6f8ff488059d5602c3c78e229.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/13d7a0124e4dee254ba9542721cae8aff9c84c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/13d7a0124e4dee254ba9542721cae8aff9c84c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/13d7a0124e4dee254ba9542721cae8aff9c84c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/d02d7c984e62691572f79d80e5242b6c231554.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/d02d7c984e62691572f79d80e5242b6c231554.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/d02d7c984e62691572f79d80e5242b6c231554.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/cee96fdb195b67f4bd3a739e29120b8084361c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/cee96fdb195b67f4bd3a739e29120b8084361c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/59/cee96fdb195b67f4bd3a739e29120b8084361c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb/f6f937b807ab48680c17928d1d75df56cbba0e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb/f6f937b807ab48680c17928d1d75df56cbba0e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/eb/f6f937b807ab48680c17928d1d75df56cbba0e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/62 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/62/7006cef85e18db149da6690856332ed0943f81.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/62/7006cef85e18db149da6690856332ed0943f81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/62/7006cef85e18db149da6690856332ed0943f81.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/c199a9222d629dedaaf4ea36bff45205ed5a66.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/c199a9222d629dedaaf4ea36bff45205ed5a66.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/c199a9222d629dedaaf4ea36bff45205ed5a66.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88/3575f11e9073016d4c1034e159711dfb226b1a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88/3575f11e9073016d4c1034e159711dfb226b1a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88/3575f11e9073016d4c1034e159711dfb226b1a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/7d5560037836bc41e0111cf716e4943d5c1bce.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/7d5560037836bc41e0111cf716e4943d5c1bce.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/7d5560037836bc41e0111cf716e4943d5c1bce.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/43 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/43/6711d61d1bbf64f129ef28c8ecb85510186e51.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/43/6711d61d1bbf64f129ef28c8ecb85510186e51.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/43/6711d61d1bbf64f129ef28c8ecb85510186e51.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46/9e9e917ebfaa51f035d05a01f5a448823ce67e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46/9e9e917ebfaa51f035d05a01f5a448823ce67e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46/9e9e917ebfaa51f035d05a01f5a448823ce67e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/e22e4145d0e064645db4085a65be340ade9add.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/e22e4145d0e064645db4085a65be340ade9add.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/e22e4145d0e064645db4085a65be340ade9add.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/6f7adc631c1b4de40ad14570284d474441248a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/6f7adc631c1b4de40ad14570284d474441248a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/6f7adc631c1b4de40ad14570284d474441248a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/9d355a64547fe227a8ec656173edcb530bcca3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/9d355a64547fe227a8ec656173edcb530bcca3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/9d355a64547fe227a8ec656173edcb530bcca3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/de4d926ce21ef70074c78656452589a7477d07.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/de4d926ce21ef70074c78656452589a7477d07.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/de4d926ce21ef70074c78656452589a7477d07.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/ae1ba285ae154ea5d4c7b3209aeaf1f410d194.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/ae1ba285ae154ea5d4c7b3209aeaf1f410d194.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cb/ae1ba285ae154ea5d4c7b3209aeaf1f410d194.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/562bd5b81dfbebcb102fce6ae0b63877405300.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/562bd5b81dfbebcb102fce6ae0b63877405300.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/562bd5b81dfbebcb102fce6ae0b63877405300.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0/9725ee23aa41bc40e5b664d3f7224dbaf7cf49.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0/9725ee23aa41bc40e5b664d3f7224dbaf7cf49.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a0/9725ee23aa41bc40e5b664d3f7224dbaf7cf49.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/ee1d9c0dbe5b4e4be4422eeebc846f0f31c2d1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/ee1d9c0dbe5b4e4be4422eeebc846f0f31c2d1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/ee1d9c0dbe5b4e4be4422eeebc846f0f31c2d1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/ce26c54880de76ae54655b6d0780cc9daf765e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/ce26c54880de76ae54655b6d0780cc9daf765e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/ce26c54880de76ae54655b6d0780cc9daf765e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/d0afcf0a8d0fe72cf0067e78c91f6506205ee3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/d0afcf0a8d0fe72cf0067e78c91f6506205ee3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/d0afcf0a8d0fe72cf0067e78c91f6506205ee3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/0817681ec95539577dd203e2a98d1cde160d9b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/0817681ec95539577dd203e2a98d1cde160d9b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/0817681ec95539577dd203e2a98d1cde160d9b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/d6bc9d197f2217a197687e074605b8e1fdd182.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/d6bc9d197f2217a197687e074605b8e1fdd182.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/d6bc9d197f2217a197687e074605b8e1fdd182.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/ef3315ef7e5a41c1e3a750ae16da08b9029e00.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/ef3315ef7e5a41c1e3a750ae16da08b9029e00.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/ef3315ef7e5a41c1e3a750ae16da08b9029e00.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/f8a743c9cfe5465d476adffd1a7698f96441f8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/f8a743c9cfe5465d476adffd1a7698f96441f8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/f8a743c9cfe5465d476adffd1a7698f96441f8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/df30446b5a6c34ba41562789cbf87537cf2ce7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/df30446b5a6c34ba41562789cbf87537cf2ce7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/df30446b5a6c34ba41562789cbf87537cf2ce7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/678061017683dc145ccbb5f0832a6336b11b02.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/678061017683dc145ccbb5f0832a6336b11b02.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9d/678061017683dc145ccbb5f0832a6336b11b02.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/27a5d8048f9bccf2bd367e87b6dc84f5fcdc63.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/27a5d8048f9bccf2bd367e87b6dc84f5fcdc63.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/27a5d8048f9bccf2bd367e87b6dc84f5fcdc63.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/5786c81359e77cd2c1035c20a84fb0dec4ad9e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/5786c81359e77cd2c1035c20a84fb0dec4ad9e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/5786c81359e77cd2c1035c20a84fb0dec4ad9e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/1f0756785414eba5bc16d50e316a36c76a2eb7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/1f0756785414eba5bc16d50e316a36c76a2eb7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/1f0756785414eba5bc16d50e316a36c76a2eb7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/16e042f560080ac18685aab7fa4fd284e70a6e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/16e042f560080ac18685aab7fa4fd284e70a6e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/16e042f560080ac18685aab7fa4fd284e70a6e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02/c773a9a0a1d0ab34a525c0c654046c3c82e178.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02/c773a9a0a1d0ab34a525c0c654046c3c82e178.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/02/c773a9a0a1d0ab34a525c0c654046c3c82e178.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50/5f4745f4bb686820a502a6e59f7db224c85902.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50/5f4745f4bb686820a502a6e59f7db224c85902.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/50/5f4745f4bb686820a502a6e59f7db224c85902.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/56cd71c84e406e67953d2d6f231a4c5eb525ab.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/56cd71c84e406e67953d2d6f231a4c5eb525ab.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/56cd71c84e406e67953d2d6f231a4c5eb525ab.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/32eeaf84a75de2619cf8364fb4675448f7026d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/32eeaf84a75de2619cf8364fb4675448f7026d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/32eeaf84a75de2619cf8364fb4675448f7026d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96/fbac03671e94fc148633e6f4425d38f1c57f6e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96/fbac03671e94fc148633e6f4425d38f1c57f6e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96/fbac03671e94fc148633e6f4425d38f1c57f6e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/1e1f4c6aa48adb70a81f14fd6d8d222df833c5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/1e1f4c6aa48adb70a81f14fd6d8d222df833c5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/1e1f4c6aa48adb70a81f14fd6d8d222df833c5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/15b6d1e7c45a904276db4b00d362c6fc6fd751.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/15b6d1e7c45a904276db4b00d362c6fc6fd751.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/15b6d1e7c45a904276db4b00d362c6fc6fd751.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/b4850abcca80f0edf36543871a368185a8844b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/b4850abcca80f0edf36543871a368185a8844b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/b4850abcca80f0edf36543871a368185a8844b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2/a68fc12adef1b64f876fdc1e4e1510070dd210.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2/a68fc12adef1b64f876fdc1e4e1510070dd210.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2/a68fc12adef1b64f876fdc1e4e1510070dd210.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40/0bd539e881aec23bb23e79cd11a9096b6f65ae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40/0bd539e881aec23bb23e79cd11a9096b6f65ae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/40/0bd539e881aec23bb23e79cd11a9096b6f65ae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/120dc9a0d7682d5cbc877ee83c95f7aef853ea.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/120dc9a0d7682d5cbc877ee83c95f7aef853ea.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/120dc9a0d7682d5cbc877ee83c95f7aef853ea.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/e2341637e0055ab694c7e3f9963f3ad286fcff.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/e2341637e0055ab694c7e3f9963f3ad286fcff.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/e2341637e0055ab694c7e3f9963f3ad286fcff.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/6b1277cff5c9fa3c6ac39e5b3400b0c9c95c19.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/6b1277cff5c9fa3c6ac39e5b3400b0c9c95c19.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/78/6b1277cff5c9fa3c6ac39e5b3400b0c9c95c19.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/a647ac94c358d63881c736246aa76d8187b750.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/a647ac94c358d63881c736246aa76d8187b750.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/a647ac94c358d63881c736246aa76d8187b750.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2/f86760cf4735eb1fb2b47b0c55e514dcb14b9a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2/f86760cf4735eb1fb2b47b0c55e514dcb14b9a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2/f86760cf4735eb1fb2b47b0c55e514dcb14b9a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4/d7870528eaa5eda6cff96e4c1facecf376d6b7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4/d7870528eaa5eda6cff96e4c1facecf376d6b7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a4/d7870528eaa5eda6cff96e4c1facecf376d6b7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69/5afb8a01292076bcce98443006822a4e907dae.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69/5afb8a01292076bcce98443006822a4e907dae.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/69/5afb8a01292076bcce98443006822a4e907dae.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/60850f1dae13eeecef8a720e969c3168c0e055.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/60850f1dae13eeecef8a720e969c3168c0e055.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/60850f1dae13eeecef8a720e969c3168c0e055.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/f5c12ac3ac73fe79d667e49499ebbcde311dd5.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/dd757b332e2091641c6dc7eba97859ad434531.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/dd757b332e2091641c6dc7eba97859ad434531.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31/84372cdd90fe4168293590e321d18cf7720eda.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31/84372cdd90fe4168293590e321d18cf7720eda.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/31/84372cdd90fe4168293590e321d18cf7720eda.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/1e1dc4bcd9cd2bfff1db244ca02c7939c5146c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/1e1dc4bcd9cd2bfff1db244ca02c7939c5146c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/1e1dc4bcd9cd2bfff1db244ca02c7939c5146c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/44c13421a2dae42ece4c1767ca08571ea25a64.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/44c13421a2dae42ece4c1767ca08571ea25a64.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/44c13421a2dae42ece4c1767ca08571ea25a64.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/e0508b55a372158d28476f2558f50299eb36a8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/e0508b55a372158d28476f2558f50299eb36a8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/e0508b55a372158d28476f2558f50299eb36a8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/5c41ef4dbd7979d86072b9f716aba372cc4207.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/5c41ef4dbd7979d86072b9f716aba372cc4207.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2b/5c41ef4dbd7979d86072b9f716aba372cc4207.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/dbb9ed21036419a644e303b605c1e0edb40d61.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/dbb9ed21036419a644e303b605c1e0edb40d61.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2f/dbb9ed21036419a644e303b605c1e0edb40d61.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/7f37fcf558b23beb983268461165ce82d78491.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/7f37fcf558b23beb983268461165ce82d78491.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/7f37fcf558b23beb983268461165ce82d78491.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/89f310d535f09810cb0d713c4d4600e6ddfd8b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/89f310d535f09810cb0d713c4d4600e6ddfd8b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/89f310d535f09810cb0d713c4d4600e6ddfd8b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/8440b7a2b0ce35a507da91373ba1c22ae69362.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/8440b7a2b0ce35a507da91373ba1c22ae69362.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/8440b7a2b0ce35a507da91373ba1c22ae69362.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/4aee86a28950a4eb42bc961954ef5eaeca2210.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/4aee86a28950a4eb42bc961954ef5eaeca2210.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/4aee86a28950a4eb42bc961954ef5eaeca2210.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/7c68a3345ca3e7f9b20ad0bd32c48ea5243ee5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/7c68a3345ca3e7f9b20ad0bd32c48ea5243ee5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/7c68a3345ca3e7f9b20ad0bd32c48ea5243ee5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0d/232388ff4c9abff7d166eab0982c7f054e2aeb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0d/232388ff4c9abff7d166eab0982c7f054e2aeb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0d/232388ff4c9abff7d166eab0982c7f054e2aeb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/c9bafebff2be166e9874b214234282f3838b90.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/c9bafebff2be166e9874b214234282f3838b90.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/c9bafebff2be166e9874b214234282f3838b90.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/33be0a4897cff3be69142e1e26c163a6dae400.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/33be0a4897cff3be69142e1e26c163a6dae400.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/33be0a4897cff3be69142e1e26c163a6dae400.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/0ff20d32961f7bb1c9932823425fedb7dd49ab.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/0ff20d32961f7bb1c9932823425fedb7dd49ab.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/0ff20d32961f7bb1c9932823425fedb7dd49ab.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/89d258363ca54a40fe8ef5a71ab1a3e4efde4f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/89d258363ca54a40fe8ef5a71ab1a3e4efde4f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/89d258363ca54a40fe8ef5a71ab1a3e4efde4f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/45 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/45/a50de17ec5cd798a010c022c143a95797ea134.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/45/a50de17ec5cd798a010c022c143a95797ea134.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/45/a50de17ec5cd798a010c022c143a95797ea134.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/02f74457ab08d4c0f99705243794a6c0be7a68.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/02f74457ab08d4c0f99705243794a6c0be7a68.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/02f74457ab08d4c0f99705243794a6c0be7a68.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f/962d7131bc44b593b4edc789bc251d833fccf0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f/962d7131bc44b593b4edc789bc251d833fccf0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4f/962d7131bc44b593b4edc789bc251d833fccf0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/faa50c0603093c7fdc06155c8d8b61b6fff964.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/faa50c0603093c7fdc06155c8d8b61b6fff964.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/faa50c0603093c7fdc06155c8d8b61b6fff964.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/64f678c3f6ae7d08af013150a88727c13553ba.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/64f678c3f6ae7d08af013150a88727c13553ba.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/64f678c3f6ae7d08af013150a88727c13553ba.debug debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/cc2f7367ddd6e404ca1ec7e6315b158a2e01ed.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/cc2f7367ddd6e404ca1ec7e6315b158a2e01ed.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/cc2f7367ddd6e404ca1ec7e6315b158a2e01ed.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/c518b5ff5a991fb1095e1349e7527cc77a0dfc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/c518b5ff5a991fb1095e1349e7527cc77a0dfc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/c518b5ff5a991fb1095e1349e7527cc77a0dfc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/593a679f342ee16652eaa231c738c512733921.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/593a679f342ee16652eaa231c738c512733921.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b8/593a679f342ee16652eaa231c738c512733921.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/0e0f9467dfb869ab1af1ee37c6493b243135b5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/0e0f9467dfb869ab1af1ee37c6493b243135b5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/0e0f9467dfb869ab1af1ee37c6493b243135b5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/372356edf5ee19918d6d12306c93070e38a404.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/372356edf5ee19918d6d12306c93070e38a404.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/372356edf5ee19918d6d12306c93070e38a404.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/97652d5a0e10051e203e80cea2cf79bb0fdca9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/97652d5a0e10051e203e80cea2cf79bb0fdca9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/97652d5a0e10051e203e80cea2cf79bb0fdca9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/9a534fc203f4b602e1bfbce4ba861f982a691e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/9a534fc203f4b602e1bfbce4ba861f982a691e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/9a534fc203f4b602e1bfbce4ba861f982a691e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/1af517c2ead07cedbb9abfdce0edda32fbdff1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/1af517c2ead07cedbb9abfdce0edda32fbdff1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/79/1af517c2ead07cedbb9abfdce0edda32fbdff1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/f71ca0526ef344476161492df3e62b9ffc94d5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/f71ca0526ef344476161492df3e62b9ffc94d5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/f71ca0526ef344476161492df3e62b9ffc94d5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41/107831aebdc8a60907eda8c6d8f3c8b7624f63.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41/107831aebdc8a60907eda8c6d8f3c8b7624f63.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41/107831aebdc8a60907eda8c6d8f3c8b7624f63.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/9697d8d2c5c35f63bd97e91e86c81e081fabb5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/9697d8d2c5c35f63bd97e91e86c81e081fabb5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/9697d8d2c5c35f63bd97e91e86c81e081fabb5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/f262f0ec1190643e51b854b3f06b68260eea0f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/f262f0ec1190643e51b854b3f06b68260eea0f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/f262f0ec1190643e51b854b3f06b68260eea0f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d7/94ba4b3e5022866338d43da2ec3670c8aa07ba.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8/00d2d95738b6fa99f7de9c7d765f3d4db69c1e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f8/00d2d95738b6fa99f7de9c7d765f3d4db69c1e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/649e465b8e08719468d97e6e9fb6dbc45c4a9e.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/170aecc257af3da947980ed19d1298d14ab091.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/170aecc257af3da947980ed19d1298d14ab091.debug debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/eec38f514ae43859cae0704ceec46f46ad93d3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/eec38f514ae43859cae0704ceec46f46ad93d3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/eec38f514ae43859cae0704ceec46f46ad93d3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/758583467a0d3c1a6d5f24a02aa07b20e45bcd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/758583467a0d3c1a6d5f24a02aa07b20e45bcd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/758583467a0d3c1a6d5f24a02aa07b20e45bcd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/6fd9e4d199a1de1f57df480daeb37af59cdacb.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30/33ad0c878ff47aab27e81f710a9d5df79922f3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30/33ad0c878ff47aab27e81f710a9d5df79922f3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/d28cb9397ac20f8648cc64493e3e4e7b0348d5.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7/c65516890e550a1305ea03326323411572665a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c7/c65516890e550a1305ea03326323411572665a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/39ba1a5676362d8523358154f07a3740476d35.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/39ba1a5676362d8523358154f07a3740476d35.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/39ba1a5676362d8523358154f07a3740476d35.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/8b3633e371ca6406a657ebe4d40d711bf26d12.debug chmod 0644 -- 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chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/75dfa134cc3f48c19ac91be761858baf3f5715.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/75dfa134cc3f48c19ac91be761858baf3f5715.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/74022c880f4f88fdf36f3f6fc63734f3140948.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/74022c880f4f88fdf36f3f6fc63734f3140948.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/74022c880f4f88fdf36f3f6fc63734f3140948.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c2/cd7fc757f8e6a10304d1ed8516af20dd3df1f9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c2/cd7fc757f8e6a10304d1ed8516af20dd3df1f9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c2/cd7fc757f8e6a10304d1ed8516af20dd3df1f9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/f1f3cbb559c7897193a0f502c2cd442826c70d.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/9a68cfb67f3d33d488c89a05a4c98a6d8bf2ac.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/9a68cfb67f3d33d488c89a05a4c98a6d8bf2ac.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/a32ecae66a627bcacd6204fd2384b03e419be7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/a32ecae66a627bcacd6204fd2384b03e419be7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/a32ecae66a627bcacd6204fd2384b03e419be7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1/b70b2b20133b8d9519cacd5268dcb93b9e0839.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1/b70b2b20133b8d9519cacd5268dcb93b9e0839.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1/b70b2b20133b8d9519cacd5268dcb93b9e0839.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/ba3cff22d11a2b1e12a25fc8fa700743a672aa.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/ba3cff22d11a2b1e12a25fc8fa700743a672aa.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/ba3cff22d11a2b1e12a25fc8fa700743a672aa.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96/6fe5fe8c50c102ff8e796e60b5d6b413069088.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96/6fe5fe8c50c102ff8e796e60b5d6b413069088.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96/6fe5fe8c50c102ff8e796e60b5d6b413069088.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8f/431ddb051652c570d32ced697dd6b3bf6e9175.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/0d7e5afe608f79f503f3207dfa20ac24b9d24d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/0d7e5afe608f79f503f3207dfa20ac24b9d24d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/9aba28c748ef7e53f2690b556c5d05255c4d77.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88/d2f8c7904a2989879b5bcae3001b0f082ffbd2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88/d2f8c7904a2989879b5bcae3001b0f082ffbd2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/61/b9a8749dc25034612ae153d5beada57aee8a74.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/825871cf724f1e027aeed52c694b8392552c69.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3f/825871cf724f1e027aeed52c694b8392552c69.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96/fff8391590ffaa651537c8d38df92eed744847.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96/fff8391590ffaa651537c8d38df92eed744847.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/96/fff8391590ffaa651537c8d38df92eed744847.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b/a775e08a99deaf359372951bf2d9efa97ea64e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b/a775e08a99deaf359372951bf2d9efa97ea64e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3b/a775e08a99deaf359372951bf2d9efa97ea64e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f/ed3e7ca56809b868dc66806c18f71c5ac0c9dd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f/ed3e7ca56809b868dc66806c18f71c5ac0c9dd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7f/ed3e7ca56809b868dc66806c18f71c5ac0c9dd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/a2962e5146c39cb5ddda034a1c085d032a4458.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/b392f3f2fd7971d91a308a0a8dc7cf626bdd90.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/b392f3f2fd7971d91a308a0a8dc7cf626bdd90.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/93e51066447d0d71c245f488ee33ae4f930e52.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/93e51066447d0d71c245f488ee33ae4f930e52.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/93e51066447d0d71c245f488ee33ae4f930e52.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/ccf43e7130e5eb51974cf0633749dd66b4561c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/ccf43e7130e5eb51974cf0633749dd66b4561c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/ccf43e7130e5eb51974cf0633749dd66b4561c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/49339d7670b1b6781e6465157b08b9ab620e6f.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/d04e13c0fc0f693ed5f9a29e8f7a5a14968649.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/99/d04e13c0fc0f693ed5f9a29e8f7a5a14968649.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/795be2eea246515fc733864398ecf86ba8f547.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/795be2eea246515fc733864398ecf86ba8f547.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/795be2eea246515fc733864398ecf86ba8f547.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/5fafc8c4887aba0cd6fb4186c1aae89a617148.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/5fafc8c4887aba0cd6fb4186c1aae89a617148.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/5fafc8c4887aba0cd6fb4186c1aae89a617148.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/81104885d6afc2ecf0fb67db1f5bd68a37eda9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/81104885d6afc2ecf0fb67db1f5bd68a37eda9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/81104885d6afc2ecf0fb67db1f5bd68a37eda9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/26/4cc6d17075c0d0fa7fc78a4592be98cc8e2351.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/2b2e7ec9b8c7f7a55e985e585a6fc4d89ff8c7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/2b2e7ec9b8c7f7a55e985e585a6fc4d89ff8c7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/c6a68ab76b78755d93810c307db92a0524e0a9.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fe/a53866d5fa667ffada55a8b3b66fdb50c8256f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fe/a53866d5fa667ffada55a8b3b66fdb50c8256f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4a/c8a5eeb41566b4ffc345edce3e85b633e56cb4.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/5a02ffba0ece9288b78ce432c05f87f9b6baa8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/5a02ffba0ece9288b78ce432c05f87f9b6baa8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/f403b00bfb0bfc4ea54300bbb816c8e3d40483.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/58425d56c391c42fd4aa2ca39c334b04258e08.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/58425d56c391c42fd4aa2ca39c334b04258e08.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/8bc64ab4a3af1a82dfd0cd0743bd66a4f83aaf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/8bc64ab4a3af1a82dfd0cd0743bd66a4f83aaf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/8bc64ab4a3af1a82dfd0cd0743bd66a4f83aaf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/29013034e4d2ea49a3f46b3ef592a31f8c4020.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/29013034e4d2ea49a3f46b3ef592a31f8c4020.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/29013034e4d2ea49a3f46b3ef592a31f8c4020.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/cdee007013abe951b5543ddab72580229ca5cb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/cdee007013abe951b5543ddab72580229ca5cb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/cdee007013abe951b5543ddab72580229ca5cb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/102659fc028dc80f34881e66c91dd692285ea9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/102659fc028dc80f34881e66c91dd692285ea9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/102659fc028dc80f34881e66c91dd692285ea9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e0/2c894f307befd7c0441a2f1124117caa6b3e7f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e0/2c894f307befd7c0441a2f1124117caa6b3e7f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e0/2c894f307befd7c0441a2f1124117caa6b3e7f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f0/b363a740b236dc7196019c94a86040d96a17e8.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/d584c9b2364a94b91fc5acb17a47072e9479b1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fd/d584c9b2364a94b91fc5acb17a47072e9479b1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/83ac4d7f7ae86e853d107beb198cf9d9643758.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/83ac4d7f7ae86e853d107beb198cf9d9643758.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/83ac4d7f7ae86e853d107beb198cf9d9643758.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/aded1a9479da7101d5fa39f97d37454116b3ae.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fe/8609fa7e037f743109b022c07b0691d383c0d7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fe/8609fa7e037f743109b022c07b0691d383c0d7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/24/311c1945705768c1b783f90510b6e3c97a5bf7.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/7b901500e7360752d1f01527d93278eaa33984.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/7b901500e7360752d1f01527d93278eaa33984.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/510f537d4fdba3776c9d4e5c4db587c7393c8f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/510f537d4fdba3776c9d4e5c4db587c7393c8f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/510f537d4fdba3776c9d4e5c4db587c7393c8f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/ff43f4001c390be7c365fb004ab07ded331ae7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/ff43f4001c390be7c365fb004ab07ded331ae7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9b/ff43f4001c390be7c365fb004ab07ded331ae7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/97eb570c1b98921c1ea7801d6ae9bbeab0476f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/97eb570c1b98921c1ea7801d6ae9bbeab0476f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/97eb570c1b98921c1ea7801d6ae9bbeab0476f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/a67eaf202d10214d8cae9ae85efe6d009627c0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/a67eaf202d10214d8cae9ae85efe6d009627c0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/a67eaf202d10214d8cae9ae85efe6d009627c0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/1aff7ec4074e84fc4edbd0099ae67ce79a2c2e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/1aff7ec4074e84fc4edbd0099ae67ce79a2c2e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/1aff7ec4074e84fc4edbd0099ae67ce79a2c2e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/da7e9dd65dcff3ec386b7ef1a23708bc05d0d7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/da7e9dd65dcff3ec386b7ef1a23708bc05d0d7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/da7e9dd65dcff3ec386b7ef1a23708bc05d0d7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/6623039e431e4a8c1ea2a346775120d1bf76c5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/6623039e431e4a8c1ea2a346775120d1bf76c5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/6623039e431e4a8c1ea2a346775120d1bf76c5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/b2a823cb0d1c688941fb3e3c1fbb255d15566f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/b2a823cb0d1c688941fb3e3c1fbb255d15566f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4c/b2a823cb0d1c688941fb3e3c1fbb255d15566f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/128b3203a26f74ebfe77b706465f4cebc7b5ee.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/128b3203a26f74ebfe77b706465f4cebc7b5ee.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/128b3203a26f74ebfe77b706465f4cebc7b5ee.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/d2c46b3efb4084b73e044407b98dd1495ee2de.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/d2c46b3efb4084b73e044407b98dd1495ee2de.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/d2c46b3efb4084b73e044407b98dd1495ee2de.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/ef9d909a12d4e187606b5cf5675d7d7c54f061.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/ef9d909a12d4e187606b5cf5675d7d7c54f061.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/ef9d909a12d4e187606b5cf5675d7d7c54f061.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/32b69ab9ca681d4eb90261d01e9fc24572b6ce.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/32b69ab9ca681d4eb90261d01e9fc24572b6ce.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6a/32b69ab9ca681d4eb90261d01e9fc24572b6ce.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/5e782f6cf1186eb5bcb2e6e0da0e7feff1d2b9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/5e782f6cf1186eb5bcb2e6e0da0e7feff1d2b9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/5e782f6cf1186eb5bcb2e6e0da0e7feff1d2b9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/65e73162813fd859169bda0ba022ef72089699.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/65e73162813fd859169bda0ba022ef72089699.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df/65e73162813fd859169bda0ba022ef72089699.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13/340a27414405136cc632f1c17370074b49b337.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13/340a27414405136cc632f1c17370074b49b337.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13/340a27414405136cc632f1c17370074b49b337.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/2d26c35238f3c72ec3aec8c5375f46c00ea101.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/2d26c35238f3c72ec3aec8c5375f46c00ea101.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/2d26c35238f3c72ec3aec8c5375f46c00ea101.debug debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/2e597e72f8b64dba92f98b115b8e94717e5ac0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/2e597e72f8b64dba92f98b115b8e94717e5ac0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4d/2e597e72f8b64dba92f98b115b8e94717e5ac0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/15819f208279d0c114c3656657a435d01a5505.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/15819f208279d0c114c3656657a435d01a5505.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/15819f208279d0c114c3656657a435d01a5505.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/6c9a3045c7fed73239952f4390998b1f912a28.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/6c9a3045c7fed73239952f4390998b1f912a28.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8d/6c9a3045c7fed73239952f4390998b1f912a28.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/7fd26b234847aea538edfb7ecafd4e4e0f6173.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/7fd26b234847aea538edfb7ecafd4e4e0f6173.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/7fd26b234847aea538edfb7ecafd4e4e0f6173.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/b8fc8f969059caa294ae4ad75a840d21d622b9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/b8fc8f969059caa294ae4ad75a840d21d622b9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/b8fc8f969059caa294ae4ad75a840d21d622b9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/e679b6c6d590a3618c3c53d95639d243f8fe81.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/e679b6c6d590a3618c3c53d95639d243f8fe81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/e679b6c6d590a3618c3c53d95639d243f8fe81.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/5159dcdd469649e0d7e7a79daf4f1f82b405b1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/5159dcdd469649e0d7e7a79daf4f1f82b405b1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/5159dcdd469649e0d7e7a79daf4f1f82b405b1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/6cd1664b4793b95b307b725601ec46e254de3b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/6cd1664b4793b95b307b725601ec46e254de3b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/6cd1664b4793b95b307b725601ec46e254de3b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/71d8ffb31e3be8641b934a890fa6c5f2c3b67b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/71d8ffb31e3be8641b934a890fa6c5f2c3b67b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1e/71d8ffb31e3be8641b934a890fa6c5f2c3b67b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa/095569dce682c873e834d44f7bcff310bc86a9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa/095569dce682c873e834d44f7bcff310bc86a9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa/095569dce682c873e834d44f7bcff310bc86a9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/8bf0900cc1bf4bcbaa7c488999c5786bfce5dc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/8bf0900cc1bf4bcbaa7c488999c5786bfce5dc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/8bf0900cc1bf4bcbaa7c488999c5786bfce5dc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/049d8f5041d8b5e9239655ac4716b68cb939d0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/049d8f5041d8b5e9239655ac4716b68cb939d0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/86/049d8f5041d8b5e9239655ac4716b68cb939d0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/686aa9f647df5a5858b8331054caa17c0abd81.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/686aa9f647df5a5858b8331054caa17c0abd81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/686aa9f647df5a5858b8331054caa17c0abd81.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/d401ada92ede15315222192dc514072dd56e54.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/d401ada92ede15315222192dc514072dd56e54.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/d401ada92ede15315222192dc514072dd56e54.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/67717608e6a79c3f12d0d12b9310cc5a8610f9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/67717608e6a79c3f12d0d12b9310cc5a8610f9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/67717608e6a79c3f12d0d12b9310cc5a8610f9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/f16b3951b475d387450976fbc49fa90d64d8ea.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/f16b3951b475d387450976fbc49fa90d64d8ea.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/f16b3951b475d387450976fbc49fa90d64d8ea.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/d3c6ee6f9bbb9e79793438ceef670235582e87.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/d3c6ee6f9bbb9e79793438ceef670235582e87.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7c/d3c6ee6f9bbb9e79793438ceef670235582e87.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/8f945899748c24dee287331d74c507fb09ec0f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/8f945899748c24dee287331d74c507fb09ec0f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/8f945899748c24dee287331d74c507fb09ec0f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/fb720a21558756ed753433248ed3b8d65dde4b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/fb720a21558756ed753433248ed3b8d65dde4b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bd/fb720a21558756ed753433248ed3b8d65dde4b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/c54ecaab1d5b8d6fc1d44dafed1047e157529b.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/c320f9f36ec2f11dcc885746d0c6e2977929ca.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/c320f9f36ec2f11dcc885746d0c6e2977929ca.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b5/33fb0a7c9e3f578540f6db7035e8ecae115891.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/58cb1d4a983dc2c76144d00e95b0687122c4a0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/58cb1d4a983dc2c76144d00e95b0687122c4a0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/f6a3db267a1f3eb463bfacccc377c3614aa22e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/f6a3db267a1f3eb463bfacccc377c3614aa22e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/75/f6a3db267a1f3eb463bfacccc377c3614aa22e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/758f9969f995b508b64093ca09e8f329fb80bf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/758f9969f995b508b64093ca09e8f329fb80bf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/758f9969f995b508b64093ca09e8f329fb80bf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/bc97c23668fe44a157dc3674ed1e4785ba002b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/bc97c23668fe44a157dc3674ed1e4785ba002b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2a/bc97c23668fe44a157dc3674ed1e4785ba002b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/585b9a8375e554fc6cec522aa463e5b32a562a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/585b9a8375e554fc6cec522aa463e5b32a562a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/585b9a8375e554fc6cec522aa463e5b32a562a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-313-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/e821cbcba7bff82287b985d4aefeedf911f18e.debug chmod 0644 -- 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ba/f1aa6d7e3963127ef9de540735a0f2a7f388a1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-313-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ba/f1aa6d7e3963127ef9de540735a0f2a7f388a1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-313-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/9557e5fa66f6bf83a0f84da90d09e9329be558.debug chmod 0644 -- 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--compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/f7951f752c6ebc63aeb9d484caa51b1126a0f4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/f7951f752c6ebc63aeb9d484caa51b1126a0f4.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/f7951f752c6ebc63aeb9d484caa51b1126a0f4.debug debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_ref_matrix_facet 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/303b735de25d109618d677a6d5b868db70789a.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/303b735de25d109618d677a6d5b868db70789a.debug debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/343a1d45d10f2abd01669ad69f07858bed6e07.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/343a1d45d10f2abd01669ad69f07858bed6e07.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18/343a1d45d10f2abd01669ad69f07858bed6e07.debug debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/3277d18e2eefb4b63e124329878a7fb9b8fbab.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/3277d18e2eefb4b63e124329878a7fb9b8fbab.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/67/3277d18e2eefb4b63e124329878a7fb9b8fbab.debug debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2/e01bff89730413e6f8e9c1bfa2d7d952560e21.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2/e01bff89730413e6f8e9c1bfa2d7d952560e21.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e2/e01bff89730413e6f8e9c1bfa2d7d952560e21.debug debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/f36a8f06ec3b60eb20033f323ebb6895db9a9e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/f36a8f06ec3b60eb20033f323ebb6895db9a9e.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cd/f36a8f06ec3b60eb20033f323ebb6895db9a9e.debug debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/f1f7df3b258822144985936a3869d8d0bfe4e2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/f1f7df3b258822144985936a3869d8d0bfe4e2.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/f1f7df3b258822144985936a3869d8d0bfe4e2.debug debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cctbx/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cctbx/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc ln -s python3-cctbx debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc/python3-cctbx-dbgsym install -m0755 -d debian/.debhelper/python3-cctbx dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/libcctbx0/DEBIAN/shlibs install -m0755 -d debian/libcctbx0/DEBIAN echo "libann_adaptor 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libasymmetric_map 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcbf-private 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libccp4io 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx_sgtbx_asu 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libdxtbxspotfinder 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_mtz 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_pdb 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_xplor 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_masks 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_tls 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libomptbx 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "librstbx 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_boost_python 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_minpack 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_slatec 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libsmtbx_refinement_constraints 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libspotfinder 0 libcctbx0 (>= 2026.4+ds2+~3.28.0+ds1)" >> debian/libcctbx0/DEBIAN/shlibs chmod 0644 -- debian/libcctbx0/DEBIAN/shlibs mv debian/.debhelper/generated/libcctbx0/triggers.new debian/.debhelper/generated/libcctbx0/triggers rm -f debian/libcctbx-dev/DEBIAN/shlibs rm -f debian/python3-cctbx/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN dpkg-shlibdeps -Tdebian/libcctbx0.substvars debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-loongarch-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-loongarch-lp64d.so.1.usr-is-merged install -m0755 -d debian/python3-cctbx/DEBIAN dpkg-shlibdeps -Tdebian/python3-cctbx.substvars debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.13/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.13/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-313-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-loongarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-loongarch-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-loongarch-lp64d.so.1.usr-is-merged dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyImport_ImportModule used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_CallFunction used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_SetItem: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 34 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyCapsule_New: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/ccp4io_adaptbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyComplex_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Next: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_AsString: it is probably a plugin dpkg-shlibdeps: warning: 51 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_SetItem: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 34 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Restore: it is probably a plugin dpkg-shlibdeps: warning: 136 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Next: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsTrue: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_TypeError: it is probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBytes_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_ModuleNotFoundError: it is probably a plugin dpkg-shlibdeps: warning: 51 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_TrueStruct: it is probably a plugin dpkg-shlibdeps: warning: 136 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_RuntimeError: it is probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyComplex_FromDoubles: it is probably a plugin dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyCapsule_New: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-313-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN install -p -m0644 debian/.debhelper/generated/libcctbx0/triggers debian/libcctbx0/DEBIAN/triggers install -m0755 -d debian/libcctbx-dev/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/postinst cat debian/python3-cctbx.postinst.debhelper >> debian/python3-cctbx/DEBIAN/postinst chmod 0755 -- debian/python3-cctbx/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/prerm cat debian/python3-cctbx.prerm.debhelper >> debian/python3-cctbx/DEBIAN/prerm chmod 0755 -- debian/python3-cctbx/DEBIAN/prerm dh_numpy3 -a -O--buildsystem=pybuild dh_numpy3: skipping binary package libcctbx0 which does not depend on the NumPy C ABI dh_numpy3: skipping binary package libcctbx-dev which does not depend on the NumPy C ABI mv debian/python3-cctbx.substvars.new debian/python3-cctbx.substvars dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx-dev/DEBIAN echo misc:Depends= >> debian/libcctbx-dev.substvars echo misc:Pre-Depends= >> debian/libcctbx-dev.substvars dpkg-gencontrol -plibcctbx-dev -ldebian/changelog -Tdebian/libcctbx-dev.substvars -cdebian/control -Pdebian/libcctbx-dev install -m0755 -d debian/libcctbx0/DEBIAN echo misc:Depends= >> debian/libcctbx0.substvars echo misc:Pre-Depends= >> debian/libcctbx0.substvars install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -cdebian/control -Pdebian/.debhelper/libcctbx0/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcctbx0-dbgsym -DDepends="libcctbx0 (= \${binary:Version})" -DDescription="debug symbols for libcctbx0" -DBuild-Ids="0f39e3d2996f54942c8be9e0ea8c3e261bfb049a 228dae0f7f902b3d342d45bddaee0eb47a701802 2bd78866d0b3aacd4294a144818d5a4b36dbcac9 5bc0e9055995ef7fb689c2efda2d58609988e8b6 65c270dbe10e066fb3860bb59a71dad640a0d8a3 675f7172cf9a1df6016f5c67589f18c9bde2aef4 6825043eea58727d75da2aedc032175d1202d448 697b41bff23a3412fbc452c012abc92e86242a6b 6d83ed6defe14771ce952e0a1ee290f017221ff0 98b10e90acc9bd942670f0ddb48e302ea37a51a3 99ca4929a74b4af956335a178be3bee32d1461ba a6234d3090a24f8dc42f77e2d15f1f8dabb9b842 b12e5c79bc3290588a80bb887d499b7e2457e293 b1e10c9892b9ec2a2eb6730b340bba9824bd41ca c9d2d37b93b3708239aee03ba6733d66e1da7ad4 e23c0bc48b05d34a971982fbc9ef2b211b401e94 f13517ee46e247d027750f50da64459ca0ea3c01 f28c0075321b130a643923e336476b6439641c15 fe6bc0fdc3cbe9c7d52091f04e9d41bff854d23b" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/python3-cctbx/DEBIAN echo misc:Depends= >> debian/python3-cctbx.substvars echo misc:Pre-Depends= >> debian/python3-cctbx.substvars install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -cdebian/control -Pdebian/.debhelper/python3-cctbx/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cctbx-dbgsym -DDepends="python3-cctbx (= \${binary:Version})" -DDescription="debug symbols for python3-cctbx" -DBuild-Ids="00d02d7c984e62691572f79d80e5242b6c231554 01960f85a36ba8e1fb7fa6a47a76ae50da3ed179 0213364f64a5e1c4940625a18d2f78b97c9c917b 02c773a9a0a1d0ab34a525c0c654046c3c82e178 03fd93cea1a88b0a07e1b8bc633ce3bded134ec2 056245772d24aef15fac0807478ef631fbcb0675 058bf0900cc1bf4bcbaa7c488999c5786bfce5dc 059a68cfb67f3d33d488c89a05a4c98a6d8bf2ac 05f4f7ba5d6a4fc20d6f758940d9f47f6ff2441c 069475faaed2031c371d2c11aa5bbcdc3e958324 0755a0b9140290348ffb7e2f5a4245a50be602ff 0833165cf0703fdc983dc57049d438d7be9eda78 08a0e1225d669913eebc6b88540dfc7260c4d6e1 094aee86a28950a4eb42bc961954ef5eaeca2210 0989f310d535f09810cb0d713c4d4600e6ddfd8b 09d2c46b3efb4084b73e044407b98dd1495ee2de 0a562bd5b81dfbebcb102fce6ae0b63877405300 0be44c5c08d993bd4edd579d3717052f7a4153a8 0d232388ff4c9abff7d166eab0982c7f054e2aeb 0d90a8d1e053b902014930bca42164696925b0a2 0e8b3633e371ca6406a657ebe4d40d711bf26d12 0ee9b81d19b595413937602167db9ec304e58476 0fbc8e1baa3a7583d303ce6f4b0297b745520aaf 11ecf351bab4a44dd4aaae7bd913be560b9d81a7 13340a27414405136cc632f1c17370074b49b337 144c38abfa8250778983d9df8680241f08c25de2 15f49e5a5bbd920e5cc23929e34eae52babfdfec 16250b83aabeb68e88de42184829b8aa67728f31 16596e48be9be45ecb825f98145937173c9503a4 181e1dc4bcd9cd2bfff1db244ca02c7939c5146c 18343a1d45d10f2abd01669ad69f07858bed6e07 187b901500e7360752d1f01527d93278eaa33984 18ff4deac1ba0a9329127e0e7e7759dd8b8a49b0 196eb20ca7a42fc9d470604b56fd1f433747a91b 1a6244f21597d903109708be9205567d98bf7a0e 1b1aff7ec4074e84fc4edbd0099ae67ce79a2c2e 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ead842713f6fb3174e9c6fadd218d85e618524c4 ebf6f937b807ab48680c17928d1d75df56cbba0e ec1e1f4c6aa48adb70a81f14fd6d8d222df833c5 ed4e913135c5cedcd8d9c41d2becd8ba68410e2f ef0ff20d32961f7bb1c9932823425fedb7dd49ab ef8e294201be6da4c2c1cbfa8f1889d06e592ecc efe58c84123b1a650cca35d54577c40c5adf1231 f009c7c6e394cb6256405c1df9d4076fba4b9f07 f0b363a740b236dc7196019c94a86040d96a17e8 f0cc765d5d32c89c1fef0b9ecc6076965456e878 f10b6322c05fc7dc97b93687869fd50c4cd049b8 f1c6a68ab76b78755d93810c307db92a0524e0a9 f2ea3f727d7b2240486900c180bb061d8047c10c f3fd49b7da647de5afb59c71523d263f14ec0f27 f4e449922126d77507f20eeaf68b2a3f12f92312 f800d2d95738b6fa99f7de9c7d765f3d4db69c1e f8296913dfe876f198d258a9b7c99d563bbfa1e0 f86977e001fb5d3bd75011cfd70208a608a7af7e f994f1e1ea9ed6216af65d0cc4e313259ee28c95 fda2dff7bede713fe4b5034e44314406e216187d fdd584c9b2364a94b91fc5acb17a47072e9479b1 fe8609fa7e037f743109b022c07b0691d383c0d7 fea53866d5fa667ffada55a8b3b66fdb50c8256f ffdf9feab7b02c92e64868f8c745382d5dee1770" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -cdebian/control -Pdebian/libcctbx0 chmod 0644 -- debian/libcctbx-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -cdebian/control -Pdebian/python3-cctbx chmod 0644 -- debian/libcctbx0/DEBIAN/control chmod 0644 -- debian/python3-cctbx/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx-dev/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN install -m0755 -d debian/libcctbx0/DEBIAN cd debian/libcctbx0 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcctbx-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-cctbx >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx0/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN cd debian/.debhelper/libcctbx0/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python3-cctbx/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cctbx/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/.debhelper/libcctbx0/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libcctbx0 .. dpkg-deb --root-owner-group --build debian/libcctbx-dev .. dpkg-deb --root-owner-group --build debian/python3-cctbx .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cctbx/dbgsym-root .. dpkg-deb: building package 'libcctbx0-dbgsym' in '../libcctbx0-dbgsym_2026.4+ds2+~3.28.0+ds1-2_loong64.deb'. dpkg-deb: building package 'libcctbx-dev' in '../libcctbx-dev_2026.4+ds2+~3.28.0+ds1-2_loong64.deb'. dpkg-deb: building package 'libcctbx0' in '../libcctbx0_2026.4+ds2+~3.28.0+ds1-2_loong64.deb'. dpkg-deb: building package 'python3-cctbx-dbgsym' in '../python3-cctbx-dbgsym_2026.4+ds2+~3.28.0+ds1-2_loong64.deb'. dpkg-deb: building package 'python3-cctbx' in '../python3-cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.deb'. dpkg-genbuildinfo --build=any -O../cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.buildinfo dpkg-genchanges --build=any -O../cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-06-16T02:24:00Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Tue, 16 Jun 2026 02:24:03 +0000 | +------------------------------------------------------------------------------+ cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.changes: ----------------------------------------------- Format: 1.8 Date: Sat, 09 May 2026 16:23:00 +0200 Source: cctbx Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx python3-cctbx-dbgsym Architecture: loong64 Version: 2026.4+ds2+~3.28.0+ds1-2 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Roland Mas Description: libcctbx-dev - Computational Crystallography Toolbox - headers libcctbx0 - Computational Crystallography Toolbox - runtime libraries python3-cctbx - Python Toolbox for crystallography Changes: cctbx (2026.4+ds2+~3.28.0+ds1-2) unstable; urgency=medium . * Various packaging improvements thanks to "debcraft improve". 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python3-cctbx-dbgsym_2026.4+ds2+~3.28.0+ds1-2_loong64.deb bebb2ded22a408a70d5e12bfb1c1113fff2b0986e469a2d77d09cf553beb880a 132104588 python3-cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.deb Build-Origin: Debian Build-Architecture: loong64 Build-Date: Tue, 16 Jun 2026 02:23:55 +0000 Build-Path: /build/reproducible-path/cctbx-2026.4+ds2+~3.28.0+ds1 Installed-Build-Depends: adwaita-icon-theme (= 50.0-1), architecture-properties (= 0.2.6+b2), at-spi2-common (= 2.60.3-1), autoconf (= 2.72-6), automake (= 1:1.18.1-4), autopoint (= 0.23.2-2), autotools-dev (= 20240727.1+nmu1), base-files (= 14+b1), base-passwd (= 3.6.8+b1), bash (= 5.3-3), binutils (= 2.46-3), binutils-common (= 2.46-3), binutils-loongarch64-linux-gnu (= 2.46-3), bsdextrautils (= 2.42-6), bubblewrap (= 0.11.2-1), build-essential (= 12.12+b1), bzip2 (= 1.0.8-6+b2), ca-certificates (= 20260223), comerr-dev (= 2.1-1.47.4-1), coreutils (= 9.10-1), cpp (= 4:15.2.0-5+b1), cpp-15 (= 15.2.0-17), cpp-15-loongarch64-linux-gnu (= 15.2.0-17), cpp-loongarch64-linux-gnu (= 4:15.2.0-5+b1), dash (= 0.5.12-12+b1), dbus (= 1.16.2-4), dbus-bin (= 1.16.2-4), dbus-daemon (= 1.16.2-4), dbus-session-bus-common (= 1.16.2-4), dbus-system-bus-common (= 1.16.2-4), dbus-user-session (= 1.16.2-4), dconf-gsettings-backend (= 0.49.0-4+b1), dconf-service (= 0.49.0-4+b1), debconf (= 1.5.92), debhelper (= 13.31), debianutils (= 5.23.2+b1), dh-autoreconf (= 22), dh-exec (= 0.31+b2), dh-python (= 7.20260309), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.12-1+b1), dpkg (= 1.23.7), dpkg-dev (= 1.23.7), dwz (= 0.16-4), fftw-dev (= 2.1.5-8), fftw2 (= 2.1.5-8), file (= 1:5.46-5+b2), findutils (= 4.10.0-4), fontconfig (= 2.17.1-5), fontconfig-config (= 2.17.1-5), fonts-dejavu-core (= 2.37-9), fonts-dejavu-extra (= 2.37-9), fonts-dejavu-mono (= 2.37-9), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4.1), fonts-lato (= 2.015-1), fonts-lyx (= 2.5.1-1), fonts-urw-base35 (= 20200910-9), g++ (= 4:15.2.0-5+b1), g++-15 (= 15.2.0-17), g++-15-loongarch64-linux-gnu (= 15.2.0-17), g++-loongarch64-linux-gnu (= 4:15.2.0-5+b1), gcc (= 4:15.2.0-5+b1), gcc-15 (= 15.2.0-17), gcc-15-base (= 15.2.0-17), gcc-15-loongarch64-linux-gnu (= 15.2.0-17), gcc-16-base (= 16-20260425-1), gcc-loongarch64-linux-gnu (= 4:15.2.0-5+b1), gettext (= 0.23.2-2), gettext-base (= 0.23.2-2), glycin-loaders (= 2.0.8-1), glycin-thumbnailers (= 2.0.8-1), grep (= 3.12-1+b1), groff-base (= 1.24.1-1), gtk-update-icon-cache (= 4.22.3+ds-1), gzip (= 1.13-1+b1), hdf5-helpers (= 1.14.6+repack-2+b1), hicolor-icon-theme (= 0.18-2), hostname (= 3.25+b1), ibverbs-providers (= 63.0-1), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), jq (= 1.8.1-5), krb5-multidev (= 1.22.1-2+b1), libabsl20260107 (= 20260107.0-5), libacl1 (= 2.3.2-3), libaec-dev (= 1.1.6-1), libaec0 (= 1.1.6-1), libann-cctbx-dev (= 1.1.2+doc-9+b1), libann-cctbx0 (= 1.1.2+doc-9+b1), libantlr3c-3.4-0 (= 3.4+dfsg-4+b3), libantlr3c-dev (= 3.4+dfsg-4+b3), libaom3 (= 3.13.1-2+b1), libapparmor1 (= 4.1.7-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 16-20260425-1), libasound2-data (= 1.2.15.3-1), libasound2t64 (= 1.2.15.3-1+b1), libasyncns0 (= 0.8-7+b2), libatk-bridge2.0-0t64 (= 2.60.3-1), libatk1.0-0t64 (= 2.60.3-1), libatomic1 (= 16-20260425-1), libatspi2.0-0t64 (= 2.60.3-1), libattr1 (= 1:2.5.2-4), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b1), libavahi-client3 (= 0.8-18), libavahi-common-data (= 0.8-18), libavahi-common3 (= 0.8-18), libavif16 (= 1.4.1-1+b1), libbinutils (= 2.46-3), libblas3 (= 3.12.1-7+b2), libblkid1 (= 2.42-6), libboost-atomic1.90-dev (= 1.90.0-6), libboost-atomic1.90.0 (= 1.90.0-6), libboost-chrono1.90-dev (= 1.90.0-6), libboost-chrono1.90.0 (= 1.90.0-6), libboost-container1.90-dev (= 1.90.0-6), libboost-container1.90.0 (= 1.90.0-6), libboost-date-time1.90-dev (= 1.90.0-6), libboost-date-time1.90.0 (= 1.90.0-6), libboost-dev (= 1.90.0.2), libboost-exception1.90-dev (= 1.90.0-6), libboost-graph1.90-dev (= 1.90.0-6), libboost-graph1.90.0 (= 1.90.0-6), libboost-numpy-dev (= 1.90.0.2), libboost-numpy1.90-dev (= 1.90.0-6), libboost-numpy1.90.0 (= 1.90.0-6), libboost-python-dev (= 1.90.0.2), libboost-python1.90-dev (= 1.90.0-6), libboost-python1.90.0 (= 1.90.0-6), libboost-regex1.90-dev (= 1.90.0-6), libboost-regex1.90.0 (= 1.90.0-6), libboost-serialization1.90-dev (= 1.90.0-6), libboost-serialization1.90.0 (= 1.90.0-6), libboost-test1.90-dev (= 1.90.0-6), libboost-test1.90.0 (= 1.90.0-6), libboost-thread-dev (= 1.90.0.2), libboost-thread1.90-dev (= 1.90.0-6), libboost-thread1.90.0 (= 1.90.0-6), libboost-timer-dev (= 1.90.0.2), libboost-timer1.90-dev (= 1.90.0-6), libboost-timer1.90.0 (= 1.90.0-6), libboost1.90-dev (= 1.90.0-6), libbrotli-dev (= 1.2.0-3), libbrotli1 (= 1.2.0-3), libbsd0 (= 0.12.2-2+b2), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.42-15), libc-dev-bin (= 2.42-15), libc-gconv-modules-extra (= 2.42-15), libc6 (= 2.42-15), libc6-dev (= 2.42-15), libcairo-gobject2 (= 1.18.4-3+b1), libcairo2 (= 1.18.4-3+b1), libcap-ng0 (= 0.9.3-1), libcap2 (= 1:2.78-1), libcbf-dev (= 0.9.7+dfsg1-5.1+b1), libcbf1t64 (= 0.9.7+dfsg1-5.1+b1), libcc1-0 (= 16-20260425-1), libccp4-data (= 8.0.0-5), libccp4-dev (= 8.0.0-5+b1), libccp4c0t64 (= 8.0.0-5+b1), libccp4f0t64 (= 8.0.0-5+b1), libclipper-dev (= 2.1.20201109-2+b4), libclipper2 (= 2.1.20201109-2+b4), libcloudproviders0 (= 0.4.0-2+b1), libcolord2 (= 1.4.8-3), libcom-err2 (= 1.47.4-1), libcrypt1 (= 1:4.5.1-1+b1), libctf-nobfd0 (= 2.46-3), libctf0 (= 2.46-3), libcups2t64 (= 2.4.18-1), libcurl3t64-gnutls (= 8.20.0-1), libcurl4-openssl-dev (= 8.20.0-1), libcurl4t64 (= 8.20.0-1), libdatrie1 (= 0.2.14-1+b1), libdav1d7 (= 1.5.3-1+b2), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdbus-1-3 (= 1.16.2-4), libdconf1 (= 0.49.0-4+b1), libde265-0 (= 1.0.18-1), libdebconfclient0 (= 0.282+b3), libdebhelper-perl (= 13.31), libdecor-0-0 (= 0.2.5-1+b1), libdeflate-dev (= 1.23-2+b2), libdeflate0 (= 1.23-2+b2), libdouble-conversion3 (= 3.4.0-1+b1), libdpkg-perl (= 1.23.7), libdrm-amdgpu1 (= 2.4.131-1+b1), libdrm-common (= 2.4.131-1), libdrm2 (= 2.4.131-1+b1), libedit2 (= 3.1-20251016-1+b1), libegl-mesa0 (= 26.0.6-1), libegl1 (= 1.7.0-3+b1), libeigen3-dev (= 3.4.0-5), libelf1t64 (= 0.195-1), libepoxy0 (= 1.5.10-2+b2), libevdev2 (= 1.13.6+dfsg-2), libevent-2.1-7t64 (= 2.1.12-stable-10+b2), libevent-core-2.1-7t64 (= 2.1.12-stable-10+b2), libevent-pthreads-2.1-7t64 (= 2.1.12-stable-10+b2), libexpat1 (= 2.8.0-1), libexpat1-dev (= 2.8.0-1), libfabric1 (= 2.1.0-1.1+b2), libffi8 (= 3.5.2-4), libfftw3-bin (= 3.3.10-2+b2), libfftw3-dev (= 3.3.10-2+b2), libfftw3-double3 (= 3.3.10-2+b2), libfftw3-long3 (= 3.3.10-2+b2), libfftw3-single3 (= 3.3.10-2+b2), libfile-stripnondeterminism-perl (= 1.15.0-1), libflac14 (= 1.5.0+ds-5+b1), libfontconfig1 (= 2.17.1-5), libfontenc1 (= 1:1.1.8-1+b3), libfreetype6 (= 2.14.3+dfsg-1), libfribidi0 (= 1.0.16-5+b1), libfuse3-4 (= 3.18.2-2), libgav1-2 (= 0.20.0-2+b1), libgbm1 (= 26.0.6-1), libgcc-15-dev (= 15.2.0-17), libgcc-s1 (= 16-20260425-1), libgcrypt20 (= 1.12.2-1), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgdk-pixbuf-2.0-0 (= 2.44.6+dfsg-2), libgdk-pixbuf2.0-common (= 2.44.6+dfsg-2), libgfortran5 (= 16-20260425-1), libgl-dev (= 1.7.0-3+b1), libgl1 (= 1.7.0-3+b1), libgl1-mesa-dri (= 26.0.6-1), libgles2 (= 1.7.0-3+b1), libglew2.3 (= 2.3.1-6), libglib2.0-0t64 (= 2.88.1-2), libglu1-mesa (= 9.0.2-1.1+b4), libglu1-mesa-dev (= 9.0.2-1.1+b4), libglut3.12 (= 3.4.0-6+b2), libglvnd0 (= 1.7.0-3+b1), libglx-dev (= 1.7.0-3+b1), libglx-mesa0 (= 26.0.6-1), libglx0 (= 1.7.0-3+b1), libglycin-2-0 (= 2.0.8-1), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16-20260425-1), libgpg-error0 (= 1.59-4), libgraphite2-3 (= 1.3.14-13), libgssapi-krb5-2 (= 1.22.1-2+b1), libgssrpc4t64 (= 1.22.1-2+b1), libgtk-3-0t64 (= 3.24.52-1), libgtk-3-common (= 3.24.52-1), libgudev-1.0-0 (= 238-7+b2), libharfbuzz-subset0 (= 12.3.2-2+b2), libharfbuzz0b (= 12.3.2-2+b2), libhdf5-310 (= 1.14.6+repack-2+b1), libhdf5-cpp-310 (= 1.14.6+repack-2+b1), libhdf5-dev (= 1.14.6+repack-2+b1), libhdf5-fortran-310 (= 1.14.6+repack-2+b1), libhdf5-hl-310 (= 1.14.6+repack-2+b1), libhdf5-hl-cpp-310 (= 1.14.6+repack-2+b1), libhdf5-hl-fortran-310 (= 1.14.6+repack-2+b1), libheif-plugin-dav1d (= 1.21.2-4), libheif-plugin-libde265 (= 1.21.2-4), libheif1 (= 1.21.2-4), libhogweed6t64 (= 3.10.2-1+b1), libhwloc-plugins (= 2.13.0-2), libhwloc15 (= 2.13.0-2), libibverbs1 (= 63.0-1), libice6 (= 2:1.1.1-1+b2), libicu78 (= 78.3-1), libidn2-0 (= 2.3.8-4+b2), libidn2-dev (= 2.3.8-4+b2), libimagequant0 (= 4.4.1-1+b2), libinput-bin (= 1.31.1-1), libinput10 (= 1.31.1-1), libisl23 (= 0.27-2), libitm1 (= 16-20260425-1), libjansson4 (= 2.14-2+b4), libjbig-dev (= 2.1-6.1+b3), libjbig0 (= 2.1-6.1+b3), libjpeg-dev (= 1:3.1.3-4), libjpeg62-turbo (= 1:3.1.3-4), libjpeg62-turbo-dev (= 1:3.1.3-4), libjq1 (= 1.8.1-5), libjs-jquery (= 3.7.1+dfsg+~3.5.33-1), libjs-sphinxdoc (= 9.1.0-2), libjxl0.11 (= 0.11.2-1), libk5crypto3 (= 1.22.1-2+b1), libkadm5clnt-mit12 (= 1.22.1-2+b1), libkadm5srv-mit12 (= 1.22.1-2+b1), libkdb5-10t64 (= 1.22.1-2+b1), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-2+b1), libkrb5-dev (= 1.22.1-2+b1), libkrb5support0 (= 1.22.1-2+b1), liblapack3 (= 3.12.1-7+b2), liblcms2-2 (= 2.19.1-1), libldap-dev (= 2.6.10+dfsg-1+b2), libldap2 (= 2.6.10+dfsg-1+b2), liblerc-dev (= 4.1.0+ds-1), liblerc4 (= 4.1.0+ds-1), libllvm21 (= 1:21.1.8-7+b1), liblsan0 (= 16-20260425-1), liblz4-1 (= 1.10.0-10), liblz4-dev (= 1.10.0-10), liblzf1 (= 3.6-4+b4), liblzma-dev (= 5.8.3-1), liblzma5 (= 5.8.3-1), libmagic-mgc (= 1:5.46-5+b2), libmagic1t64 (= 1:5.46-5+b2), libmd0 (= 1.1.0-2+b2), libmd4c0 (= 0.5.2-2+b2), libmmdb2-0 (= 2.0.22-1+b3), libmmdb2-dev (= 2.0.22-1+b3), libmount1 (= 2.42-6), libmp3lame0 (= 3.101~svn6531+dfsg-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libmpg123-0t64 (= 1.33.5-1), libmtdev1t64 (= 1.1.7-1+b2), libmunge2 (= 0.5.18-1), libncursesw6 (= 6.6+20251231-1+b1), libnetcdf22 (= 1:4.10.0-1), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.69.0-1), libnghttp2-dev (= 1.69.0-1), libnghttp3-9 (= 1.15.0-1), libnghttp3-dev (= 1.15.0-1), libngtcp2-16 (= 1.22.1-1), libngtcp2-crypto-gnutls8 (= 1.22.1-1), libngtcp2-crypto-ossl-dev (= 1.22.1-1), libngtcp2-crypto-ossl0 (= 1.22.1-1), libngtcp2-dev (= 1.22.1-1), libnl-3-200 (= 3.12.0-2+b1), libnl-route-3-200 (= 3.12.0-2+b1), libnotify4 (= 0.8.8-1+b1), libogg0 (= 1.3.6-2+b1), libonig5 (= 6.9.10-1+b1), libopengl-dev (= 1.7.0-3+b1), libopengl0 (= 1.7.0-3+b1), libopenjp2-7 (= 2.5.4-1.1), libopenmpi40 (= 5.0.10-1), libopus0 (= 1.6.1-1+b1), libp11-kit-dev (= 0.26.2-2), libp11-kit0 (= 0.26.2-2), libpam-modules (= 1.7.0-5+b2), libpam-modules-bin (= 1.7.0-5+b2), libpam-runtime (= 1.7.0-5), libpam-systemd (= 260.1-1), libpam0g (= 1.7.0-5+b2), libpango-1.0-0 (= 1.57.1-2), libpangocairo-1.0-0 (= 1.57.1-2), libpangoft2-1.0-0 (= 1.57.1-2), libpciaccess0 (= 0.17-3+b4), libpcre2-16-0 (= 10.46-1+b2), libpcre2-32-0 (= 10.46-1+b2), libpcre2-8-0 (= 10.46-1+b2), libperl5.40 (= 5.40.1-7+b1), libpipeline1 (= 1.5.8-3), libpixman-1-0 (= 0.46.4-1+b2), libpkgconf7 (= 2.5.1-4), libpmix2t64 (= 6.0.0+really5.0.9-3+b1), libpng16-16t64 (= 1.6.58-1), libpopt0 (= 1.19+dfsg-2+b2), libproc2-0 (= 2:4.0.4-9+b2), libpsl-dev (= 0.21.5-1), libpsl5t64 (= 0.21.5-1), libpulse0 (= 17.0+dfsg1-2.1+b1), libpython3-all-dev (= 3.13.9-3+b1), libpython3-dev (= 3.13.9-3+b1), libpython3-stdlib (= 3.13.9-3+b1), libpython3.13 (= 3.13.12-1), libpython3.13-dev (= 3.13.12-1), libpython3.13-minimal (= 3.13.12-1), libpython3.13-stdlib (= 3.13.12-1), libpython3.14 (= 3.14.5~rc1-1), libpython3.14-dev (= 3.14.5~rc1-1), libpython3.14-minimal (= 3.14.5~rc1-1), libpython3.14-stdlib (= 3.14.5~rc1-1), libqhull-r8.0 (= 2020.2-9), libqt5core5t64 (= 5.15.17+dfsg-8), libqt5dbus5t64 (= 5.15.17+dfsg-8), libqt5designer5 (= 5.15.17-4+b1), libqt5gui5t64 (= 5.15.17+dfsg-8), libqt5help5 (= 5.15.17-4+b1), libqt5network5t64 (= 5.15.17+dfsg-8), libqt5opengl5t64 (= 5.15.17+dfsg-8), libqt5printsupport5t64 (= 5.15.17+dfsg-8), libqt5sql5t64 (= 5.15.17+dfsg-8), libqt5test5t64 (= 5.15.17+dfsg-8), libqt5widgets5t64 (= 5.15.17+dfsg-8), libqt5xml5t64 (= 5.15.17+dfsg-8), libraqm0 (= 0.10.5-1), librdmacm1t64 (= 63.0-1), libreadline8t64 (= 8.3-4), librsvg2-2 (= 2.62.1+dfsg-1), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-11), libsasl2-modules-db (= 2.1.28+dfsg1-11), libsdl2-2.0-0 (= 2.32.68+ds-1), libsdl3-0 (= 3.4.8+ds-1), libseccomp2 (= 2.6.0-2+b1), libselinux1 (= 3.10-1), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2+b2), libsframe3 (= 2.46-3), libsharpyuv-dev (= 1.5.0-0.1+b2), libsharpyuv0 (= 1.5.0-0.1+b2), libsm6 (= 2:1.2.6-1+b2), libsmartcols1 (= 2.42-6), libsndfile1 (= 1.2.2-4+b1), libsqlite3-0 (= 3.46.1-9+b1), libssh2-1-dev (= 1.11.1-2), libssh2-1t64 (= 1.11.1-2), libssl-dev (= 3.6.2-1), libssl3t64 (= 3.6.2-1), libssm-dev (= 1.4.0-2+b4), libssm2 (= 1.4.0-2+b4), libstdc++-15-dev (= 15.2.0-17), libstdc++6 (= 16-20260425-1), libsvtav1enc4 (= 4.1.0+dfsg-1), libsystemd-shared (= 260.1-1), libsystemd0 (= 260.1-1), libsz2 (= 1.1.6-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtcl8.6 (= 8.6.17+dfsg-1+b2), libthai-data (= 0.1.30-1), libthai0 (= 0.1.30-1+b1), libtiff-dev (= 4.7.1-2), libtiff6 (= 4.7.1-2), libtiffxx6 (= 4.7.1-2), libtinfo6 (= 6.6+20251231-1+b1), libtk8.6 (= 8.6.17-1+b2), libtool (= 2.5.4-11), libtsan2 (= 16-20260425-1), libubsan1 (= 16-20260425-1), libuchardet0 (= 0.0.8-2+b2), libucx0 (= 1.20.1~rc2-1), libudev1 (= 260.1-1), libunbound8 (= 1.25.0-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42-6), libvorbis0a (= 1.3.7-3+b2), libvorbisenc2 (= 1.3.7-3+b2), libvulkan1 (= 1.4.341.0-1), libwacom-common (= 2.18.0-1), libwacom9 (= 2.18.0-1), libwayland-client0 (= 1.24.0-2+b2), libwayland-cursor0 (= 1.24.0-2+b2), libwayland-egl1 (= 1.24.0-2+b2), libwebp-dev (= 1.5.0-0.1+b2), libwebp7 (= 1.5.0-0.1+b2), libwebpdecoder3 (= 1.5.0-0.1+b2), libwebpdemux2 (= 1.5.0-0.1+b2), libwebpmux3 (= 1.5.0-0.1+b2), libwxbase3.2-1t64 (= 3.2.9+dfsg-1+b1), libwxgtk-gl3.2-1t64 (= 3.2.9+dfsg-1+b1), libwxgtk3.2-1t64 (= 3.2.9+dfsg-1+b1), libx11-6 (= 2:1.8.13-1), libx11-data (= 2:1.8.13-1), libx11-dev (= 2:1.8.13-1), libx11-xcb1 (= 2:1.8.13-1), libxau-dev (= 1:1.0.11-1+b2), libxau6 (= 1:1.0.11-1+b2), libxcb-dri3-0 (= 1.17.0-2+b2), libxcb-glx0 (= 1.17.0-2+b2), libxcb-icccm4 (= 0.4.2-1+b2), libxcb-image0 (= 0.4.0-2+b3), libxcb-keysyms1 (= 0.4.1-1+b2), libxcb-present0 (= 1.17.0-2+b2), libxcb-randr0 (= 1.17.0-2+b2), libxcb-render-util0 (= 0.3.10-1+b2), libxcb-render0 (= 1.17.0-2+b2), libxcb-shape0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb-sync1 (= 1.17.0-2+b2), libxcb-util1 (= 0.4.1-1+b2), libxcb-xfixes0 (= 1.17.0-2+b2), libxcb-xinerama0 (= 1.17.0-2+b2), libxcb-xinput0 (= 1.17.0-2+b2), libxcb-xkb1 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxcb1-dev (= 1.17.0-2+b2), libxcomposite1 (= 1:0.4.6-1+b2), libxcursor1 (= 1:1.2.3-1+b2), libxdamage1 (= 1:1.1.7-1+b1), libxdmcp-dev (= 1:1.1.5-2+b1), libxdmcp6 (= 1:1.1.5-2+b1), libxext6 (= 2:1.3.4-1+b4), libxfixes3 (= 1:6.0.0-2+b5), libxft2 (= 2.3.6-1+b5), libxi6 (= 2:1.8.2-2+b1), libxinerama1 (= 2:1.1.4-3+b5), libxkbcommon-x11-0 (= 1.13.1-1), libxkbcommon0 (= 1.13.1-1), libxml2-16 (= 2.15.2+dfsg-0.1), libxnvctrl0 (= 535.171.04-1+b3), libxrandr2 (= 2:1.5.4-1+b4), libxrender1 (= 1:0.9.12-1+b2), libxres1 (= 2:1.2.1-2), libxshmfence1 (= 1.3.3-1+b2), libxslt1.1 (= 1.1.45-0.1), libxss1 (= 1:1.2.3-1+b4), libxtst6 (= 2:1.2.5-1+b2), libxxf86vm1 (= 1:1.1.4-2+b1), libxxhash-dev (= 0.8.3-2+b2), libxxhash0 (= 0.8.3-2+b2), libyuv0 (= 0.0.1922.20260106-1+b1), libz3-4 (= 4.13.3-1+b2), libzopfli1 (= 1.0.3-3+b1), libzstd-dev (= 1.5.7+dfsg-3+b2), libzstd1 (= 1.5.7+dfsg-3+b2), linux-libc-dev (= 6.19.14-1), m4 (= 1.4.21-1), make (= 4.4.1-3+b1), man-db (= 2.13.1-1+b1), mawk (= 1.3.4.20260302-1), media-types (= 14.0.0), mesa-libgallium (= 26.0.6-1), mount (= 2.42-6), ncurses-base (= 6.6+20251231-1), ncurses-bin (= 6.6+20251231-1+b1), netbase (= 6.5), nettle-dev (= 3.10.2-1+b1), ocl-icd-libopencl1 (= 2.3.4-1+b1), openssl (= 3.6.2-1), openssl-provider-legacy (= 3.6.2-1), patch (= 2.8-2+b1), perl (= 5.40.1-7+b1), perl-base (= 5.40.1-7+b1), perl-modules-5.40 (= 5.40.1-7), pkg-config (= 2.5.1-4), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.4-9+b2), pybind11-dev (= 3.0.1-3), pybuild-plugin-pyproject (= 7.20260309), pymol-data (= 3.1.0+dfsg-1), python-matplotlib-data (= 3.10.7+dfsg1-3), python3 (= 3.13.9-3+b1), python3-all (= 3.13.9-3+b1), python3-all-dev (= 3.13.9-3+b1), python3-attr (= 26.1.0-1), python3-autocommand (= 2.2.2-4), python3-biopython (= 1.86+dfsg-1+b1), python3-brotli (= 1.2.0-3), python3-build (= 1.4.0-1), python3-cairo (= 1.27.0-2+b1), python3-certifi (= 2026.4.22+ds-1), python3-chardet (= 5.2.0+dfsg-2), python3-charset-normalizer (= 3.4.7-1), python3-contourpy (= 1.3.3-1+b1), python3-cycler (= 0.12.1-2), python3-dateutil (= 2.9.0-4), python3-decorator (= 5.2.1-2), python3-dev (= 3.13.9-3+b1), python3-editables (= 0.5-3), python3-flexcache (= 0.3-3), python3-flexparser (= 0.4-2), python3-fonttools (= 4.62.1-7), python3-freetype (= 2.5.1-2), python3-h5py (= 3.16.0-2), python3-h5py-serial (= 3.16.0-2), python3-hatchling (= 1.29.0-1), python3-hdf5plugin (= 5.1.0-1), python3-idna (= 3.11-1), python3-inflect (= 7.5.0-1), python3-iniconfig (= 2.1.0-2), python3-installer (= 1.0.0+dfsg1-1), python3-jaraco.context (= 6.0.1-2), python3-jaraco.functools (= 4.1.0-1), python3-jaraco.text (= 4.0.0-1), python3-kiwisolver (= 1.5.0-1), python3-legacy-cgi (= 2.6.4-2), python3-lxml (= 6.1.0-1), python3-lz4 (= 4.4.5+dfsg-1+b1), python3-matplotlib (= 3.10.7+dfsg1-3), python3-minimal (= 3.13.9-3+b1), python3-more-itertools (= 10.8.0-1), python3-mpmath (= 1.4.1-2), python3-mrcfile (= 1.5.4-3), python3-msgpack (= 1.1.2-2), python3-natsort (= 8.4.0-2), python3-numpy (= 1:2.4.4+ds-2), python3-numpy-dev (= 1:2.4.4+ds-2), python3-nxmx (= 0.0.7-1), python3-opengl (= 3.1.10+dfsg-1), python3-ordered-set (= 4.1.0-1), python3-packaging (= 26.0-1), python3-pathspec (= 1.0.4-1), python3-pil (= 12.2.0-1), python3-pil.imagetk (= 12.2.0-1), python3-pint (= 0.25.3-1), python3-pip (= 26.0.1+dfsg-1), python3-pkg-resources (= 78.1.1-0.1), python3-platformdirs (= 4.9.6-1), python3-pluggy (= 1.6.0-2), python3-procrunner (= 2.3.3-2), python3-psutil (= 7.1.0-1+b1), python3-pycbf (= 0.9.7+dfsg1-5.1+b1), python3-pygments (= 2.19.2+dfsg-1), python3-pymol (= 3.1.0+dfsg-1+b1), python3-pyparsing (= 3.3.2-2), python3-pyproject-hooks (= 1.2.0-1), python3-pyqt5 (= 5.15.11+dfsg-4), python3-pyqt5.qtopengl (= 5.15.11+dfsg-4), python3-pyqt5.sip (= 12.18.0-1), python3-pytest (= 9.0.3-1), python3-reportlab (= 4.4.10-1), python3-requests (= 2.32.5+dfsg-1), python3-rlpycairo (= 0.3.0-4), python3-scipy (= 1.16.3-4+b1), python3-setuptools (= 78.1.1-0.1), python3-six (= 1.17.0-2), python3-sympy (= 1.14.0-3), python3-tk (= 3.13.9-3+b1), python3-tqdm (= 4.67.3-1), python3-trove-classifiers (= 2026.1.14.14-1), python3-typeguard (= 4.4.4-2), python3-typing-extensions (= 4.15.0-2), python3-ufolib2 (= 0.18.1+dfsg1-1), python3-uharfbuzz (= 0.53.3-1), python3-urllib3 (= 2.6.3-2), python3-wheel (= 0.47.0-1), python3-wxgtk4.0 (= 4.2.4+dfsg-1+b1), python3-zipp (= 3.23.0-1), python3-zopfli (= 0.4.1-1), python3.13 (= 3.13.12-1), python3.13-dev (= 3.13.12-1), python3.13-minimal (= 3.13.12-1), python3.13-tk (= 3.13.12-1), python3.14 (= 3.14.5~rc1-1), python3.14-dev (= 3.14.5~rc1-1), python3.14-minimal (= 3.14.5~rc1-1), python3.14-tk (= 3.14.5~rc1-1), readline-common (= 8.3-4), rpcsvc-proto (= 1.4.3-1+b1), rsync (= 3.4.2+ds1-2), scons (= 4.10.1+dfsg-2), sed (= 4.9-3), sensible-utils (= 0.0.26), sfftw-dev (= 2.1.5-8), sfftw2 (= 2.1.5-8), sgml-base (= 1.31+nmu1), shared-mime-info (= 2.4-5+b2), sphinx-rtd-theme-common (= 3.1.0+dfsg-1), systemd (= 260.1-1), systemd-sysv (= 260.1-1), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-4), tzdata (= 2026b-1), unicode-data (= 17.0.0-2), util-linux (= 2.42-6), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+26), x11proto-dev (= 2025.1-1), xfonts-encodings (= 1:1.0.4-2.2), xfonts-utils (= 1:7.7+7+b1), xkb-data (= 2.47-1), xml-core (= 0.20), xorg-sgml-doctools (= 1:1.12.1-1), xtrans-dev (= 1.6.0-1), xz-utils (= 5.8.3-1), zlib1g (= 1:1.3.dfsg+really1.3.2-3), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-3) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1778336580" +------------------------------------------------------------------------------+ | Package contents Tue, 16 Jun 2026 02:24:04 +0000 | +------------------------------------------------------------------------------+ libcctbx-dev_2026.4+ds2+~3.28.0+ds1-2_loong64.deb ------------------------------------------------- new Debian package, version 2.0. size 1167516 bytes: control archive=23428 bytes. 2959 bytes, 55 lines control 63993 bytes, 830 lines md5sums Package: libcctbx-dev Source: cctbx Version: 2026.4+ds2+~3.28.0+ds1-2 Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 8657 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2026.4+ds2+~3.28.0+ds1-2) Section: libdevel Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everything needed to link against the cctbx libraries. drwxr-xr-x root/root 0 2026-05-09 14:23 ./ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/annlib_adaptbx/ -rw-r--r-- root/root 2068 2026-05-09 14:23 ./usr/include/annlib_adaptbx/ann_adaptor.h drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/boost_adaptbx/ -rw-r--r-- root/root 933 2026-04-30 22:59 ./usr/include/boost_adaptbx/boost_range_python.hpp -rw-r--r-- root/root 930 2026-04-30 22:59 ./usr/include/boost_adaptbx/convertible.h -rw-r--r-- root/root 3412 2026-04-30 22:59 ./usr/include/boost_adaptbx/exporting.hpp -rw-r--r-- root/root 3770 2026-04-30 22:59 ./usr/include/boost_adaptbx/floating_point_exceptions.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/boost_adaptbx/graph/ -rw-r--r-- root/root 1588 2026-04-30 22:59 ./usr/include/boost_adaptbx/graph/graph_export_adaptor.hpp -rw-r--r-- root/root 2301 2026-04-30 22:59 ./usr/include/boost_adaptbx/graph/graph_type.hpp -rw-r--r-- root/root 9259 2026-04-30 22:59 ./usr/include/boost_adaptbx/graph/maximum_clique_greedy.hpp -rw-r--r-- root/root 13452 2026-04-30 22:59 ./usr/include/boost_adaptbx/graph/maximum_clique_rascal.hpp -rw-r--r-- root/root 7254 2026-04-30 22:59 ./usr/include/boost_adaptbx/graph/vertex_map.hpp -rw-r--r-- root/root 2046 2026-04-30 22:59 ./usr/include/boost_adaptbx/hash.h -rw-r--r-- root/root 1442 2026-04-30 22:59 ./usr/include/boost_adaptbx/iterator_range.h -rw-r--r-- root/root 2380 2026-04-30 22:59 ./usr/include/boost_adaptbx/optional_conversions.h -rw-r--r-- root/root 160 2026-04-30 22:59 ./usr/include/boost_adaptbx/precompiled.h -rw-r--r-- root/root 15836 2026-04-30 22:59 ./usr/include/boost_adaptbx/python_streambuf.h -rw-r--r-- root/root 2273 2026-04-30 22:59 ./usr/include/boost_adaptbx/std_pair_conversion.h -rw-r--r-- root/root 742 2026-04-30 22:59 ./usr/include/boost_adaptbx/std_pair_fwd.h -rw-r--r-- root/root 1177 2026-04-30 22:59 ./usr/include/boost_adaptbx/swig_arg.hpp drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/boost_adaptbx/tests/ -rw-r--r-- root/root 1847 2026-04-30 22:59 ./usr/include/boost_adaptbx/tests/tst_optional_copy.h -rw-r--r-- root/root 1499 2026-04-30 22:59 ./usr/include/boost_adaptbx/tuple_conversion.h -rw-r--r-- root/root 380 2026-05-09 14:23 ./usr/include/boost_adaptbx/type_id_eq.h drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/cbflib_adaptbx/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/cbflib_adaptbx/detectors/ -rw-r--r-- root/root 858 2026-04-30 22:59 ./usr/include/cbflib_adaptbx/detectors/basic.h drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/cbflib_adaptbx/detectors/boost_python/ -rw-r--r-- root/root 8255 2026-05-09 14:23 ./usr/include/cbflib_adaptbx/detectors/boost_python/cbf_binary_adaptor.h -rw-r--r-- root/root 1764 2026-04-30 22:59 ./usr/include/cbflib_adaptbx/detectors/boost_python/general_cbf_write.h -rw-r--r-- root/root 305 2026-04-30 22:59 ./usr/include/cbflib_adaptbx/detectors/buffer_based_service.h -rw-r--r-- root/root 6894 2026-05-09 14:23 ./usr/include/cbflib_adaptbx/detectors/cbf_adaptor.h -rw-r--r-- root/root 850 2026-05-09 14:23 ./usr/include/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.h -rw-r--r-- root/root 2701 2026-05-09 14:23 ./usr/include/cbflib_adaptbx/detectors/mar_adaptor.h drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ -rw-r--r-- root/root 2043 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_ccplib_fem.hpp -rw-r--r-- root/root 3515 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_diskio_fem.hpp -rw-r--r-- root/root 2389 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_fftlib_fem.hpp -rw-r--r-- root/root 535 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_library_fem.hpp -rw-r--r-- root/root 1896 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_maplib_fem.hpp -rw-r--r-- root/root 8765 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_mtzlib_fem.hpp -rw-r--r-- root/root 892 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_other_fem.hpp -rw-r--r-- root/root 1656 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_parser_f.h -rw-r--r-- root/root 1398 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_parser_fem.hpp -rw-r--r-- root/root 4502 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/ccp4_symlib_fem.hpp -rw-r--r-- root/root 17883 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/cmaplib_f.h -rw-r--r-- root/root 23922 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/cmtzlib_f.h -rw-r--r-- root/root 15631 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/csymlib_f.h drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/dev/ -rw-r--r-- root/root 703 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/dev/fftlib.hpp -rw-r--r-- root/root 611 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/library_f.h -rw-r--r-- root/root 345 2026-05-09 14:23 ./usr/include/ccp4io_adaptbx/printf_wrappers.h 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2026-04-30 22:59 ./usr/include/cctbx/symmetry_search/ -rw-r--r-- root/root 6106 2026-04-30 22:59 ./usr/include/cctbx/symmetry_search/translation_refinement.h -rw-r--r-- root/root 492 2026-04-30 22:59 ./usr/include/cctbx/tagged_value.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/cctbx/translation_search/ -rw-r--r-- root/root 2224 2026-04-30 22:59 ./usr/include/cctbx/translation_search/fast_nv1995.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/cctbx/translation_search/fast_nv1995/ -rw-r--r-- root/root 2516 2026-04-30 22:59 ./usr/include/cctbx/translation_search/fast_nv1995/combinations.h -rw-r--r-- root/root 1521 2026-04-30 22:59 ./usr/include/cctbx/translation_search/fast_nv1995/intermediates.h -rw-r--r-- root/root 8723 2026-04-30 22:59 ./usr/include/cctbx/translation_search/fast_nv1995/summations.h -rw-r--r-- root/root 4175 2026-04-30 22:59 ./usr/include/cctbx/translation_search/fast_terms.h -rw-r--r-- root/root 138 2026-04-30 22:59 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3883 2026-04-30 22:59 ./usr/include/scitbx/math/utils.h -rw-r--r-- root/root 6517 2026-04-30 22:59 ./usr/include/scitbx/math/weighted_covariance.h -rw-r--r-- root/root 56695 2026-04-30 22:59 ./usr/include/scitbx/math/zernike.h -rw-r--r-- root/root 26688 2026-04-30 22:59 ./usr/include/scitbx/math/zernike_moments.h drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/scitbx/matrix/ -rw-r--r-- root/root 2132 2026-04-30 22:59 ./usr/include/scitbx/matrix/as_xyz.h -rw-r--r-- root/root 13164 2026-04-30 22:59 ./usr/include/scitbx/matrix/cholesky.h -rw-r--r-- root/root 291 2026-04-30 22:59 ./usr/include/scitbx/matrix/delta_tensors.h -rw-r--r-- root/root 905 2026-04-30 22:59 ./usr/include/scitbx/matrix/diagonal.h -rw-r--r-- root/root 11882 2026-04-30 22:59 ./usr/include/scitbx/matrix/eigensystem.h -rw-r--r-- root/root 7887 2026-04-30 22:59 ./usr/include/scitbx/matrix/givens.h -rw-r--r-- root/root 26266 2026-04-30 22:59 ./usr/include/scitbx/matrix/householder.h -rw-r--r-- root/root 3075 2026-04-30 22:59 ./usr/include/scitbx/matrix/inversion.h -rw-r--r-- root/root 3042 2026-04-30 22:59 ./usr/include/scitbx/matrix/lu_decomposition.h -rw-r--r-- root/root 4031 2026-04-30 22:59 ./usr/include/scitbx/matrix/matrix_vector_operations.h -rw-r--r-- root/root 7602 2026-04-30 22:59 ./usr/include/scitbx/matrix/move.h -rw-r--r-- root/root 5386 2026-04-30 22:59 ./usr/include/scitbx/matrix/multiply.h -rw-r--r-- root/root 1495 2026-04-30 22:59 ./usr/include/scitbx/matrix/norms.h -rw-r--r-- root/root 1801 2026-04-30 22:59 ./usr/include/scitbx/matrix/outer_product.h -rw-r--r-- root/root 9823 2026-04-30 22:59 ./usr/include/scitbx/matrix/packed.h -rw-r--r-- root/root 5862 2026-04-30 22:59 ./usr/include/scitbx/matrix/row_echelon.h -rw-r--r-- root/root 3188 2026-04-30 22:59 ./usr/include/scitbx/matrix/row_echelon_full_pivoting.h -rw-r--r-- root/root 4793 2026-04-30 22:59 ./usr/include/scitbx/matrix/row_echelon_full_pivoting_impl.h -rw-r--r-- root/root 1873 2026-04-30 22:59 ./usr/include/scitbx/matrix/row_echelon_full_pivoting_small.h -rw-r--r-- root/root 2316 2026-04-30 22:59 ./usr/include/scitbx/matrix/special_matrices.h -rw-r--r-- root/root 25064 2026-04-30 22:59 ./usr/include/scitbx/matrix/svd.h -rw-r--r-- root/root 4024 2026-04-30 22:59 ./usr/include/scitbx/matrix/symmetric_rank_1_update.h -rw-r--r-- root/root 5006 2026-04-30 22:59 ./usr/include/scitbx/matrix/tensor_rank_2.h -rw-r--r-- root/root 14705 2026-04-30 22:59 ./usr/include/scitbx/matrix/tensors.h -rw-r--r-- root/root 3577 2026-04-30 22:59 ./usr/include/scitbx/matrix/tests.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/matrix/tests/ -rw-r--r-- root/root 1477 2026-04-30 22:59 ./usr/include/scitbx/matrix/tests/utils.h -rw-r--r-- root/root 1465 2026-04-30 22:59 ./usr/include/scitbx/matrix/transpose_multiply.h -rw-r--r-- root/root 3603 2026-04-30 22:59 ./usr/include/scitbx/matrix/triangular_systems.h -rw-r--r-- root/root 583 2026-04-30 22:59 ./usr/include/scitbx/matrix/vector_operations.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/minpack/ -rw-r--r-- root/root 4322 2026-04-30 22:59 ./usr/include/scitbx/minpack/levenberg_marquardt.h -rw-r--r-- root/root 18187 2026-04-30 22:59 ./usr/include/scitbx/minpack/raw.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/misc/ -rw-r--r-- root/root 2968 2026-04-30 22:59 ./usr/include/scitbx/misc/file_utils.h -rw-r--r-- root/root 800 2026-04-30 22:59 ./usr/include/scitbx/misc/positive_getitem_index.h -rw-r--r-- root/root 2141 2026-04-30 22:59 ./usr/include/scitbx/misc/split_lines.h -rw-r--r-- root/root 1872 2026-04-30 22:59 ./usr/include/scitbx/numerical.h -rw-r--r-- root/root 1489 2026-04-30 22:59 ./usr/include/scitbx/r3_utils.hpp -rw-r--r-- root/root 9496 2026-04-30 22:59 ./usr/include/scitbx/random.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/random/ drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/random/boost_python/ -rw-r--r-- root/root 2634 2026-04-30 22:59 ./usr/include/scitbx/random/boost_python/random.h -rw-r--r-- root/root 5526 2026-04-30 22:59 ./usr/include/scitbx/random/mersenne_twister.h -rw-r--r-- root/root 1156 2026-04-30 22:59 ./usr/include/scitbx/random/variate_generator.h -rw-r--r-- root/root 7661 2026-04-30 22:59 ./usr/include/scitbx/random_legacy_boost_1_63.h -rw-r--r-- root/root 1788 2026-04-30 22:59 ./usr/include/scitbx/rational.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/ -rw-r--r-- root/root 1900 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/array_packing.h -rw-r--r-- root/root 8601 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/body_lib.h -rw-r--r-- root/root 827 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/body_t.h -rw-r--r-- root/root 31206 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/featherstone.h -rw-r--r-- root/root 18908 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/joint_lib.h -rw-r--r-- root/root 2288 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/joint_t.h -rw-r--r-- root/root 4430 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/matrix_helpers.h -rw-r--r-- root/root 179 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/namespace.h -rw-r--r-- root/root 4748 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/spatial_lib.h -rw-r--r-- root/root 13152 2026-04-30 22:59 ./usr/include/scitbx/rigid_body/tardy.h -rw-r--r-- root/root 683 2026-04-30 22:59 ./usr/include/scitbx/rotr3.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/serialization/ -rw-r--r-- root/root 10056 2026-04-30 22:59 ./usr/include/scitbx/serialization/base_256.h -rw-r--r-- root/root 4719 2026-04-30 22:59 ./usr/include/scitbx/serialization/double_buffered.h -rw-r--r-- root/root 5427 2026-04-30 22:59 ./usr/include/scitbx/serialization/single_buffered.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/slatec/ -rw-r--r-- root/root 370 2026-04-30 22:59 ./usr/include/scitbx/slatec/lib_c.h -rw-r--r-- root/root 1354 2026-04-30 22:59 ./usr/include/scitbx/slatec/lib_cpp.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/sparse/ -rw-r--r-- root/root 1653 2026-04-30 22:59 ./usr/include/scitbx/sparse/approx_equal.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/sparse/boost_python/ -rw-r--r-- root/root 1063 2026-04-30 22:59 ./usr/include/scitbx/sparse/boost_python/vector.h -rw-r--r-- root/root 3021 2026-04-30 22:59 ./usr/include/scitbx/sparse/dfs.h -rw-r--r-- root/root 4091 2026-04-30 22:59 ./usr/include/scitbx/sparse/io.h -rw-r--r-- root/root 10007 2026-04-30 22:59 ./usr/include/scitbx/sparse/lu_factorization.h -rw-r--r-- root/root 17865 2026-04-30 22:59 ./usr/include/scitbx/sparse/matrix.h -rw-r--r-- root/root 2122 2026-04-30 22:59 ./usr/include/scitbx/sparse/operators.h -rw-r--r-- root/root 6837 2026-04-30 22:59 ./usr/include/scitbx/sparse/random.h -rw-r--r-- root/root 2541 2026-04-30 22:59 ./usr/include/scitbx/sparse/triangular.h -rw-r--r-- root/root 195 2026-04-30 22:59 ./usr/include/scitbx/sparse/util.h -rw-r--r-- root/root 22182 2026-04-30 22:59 ./usr/include/scitbx/sparse/vector.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/stl/ -rw-r--r-- root/root 1708 2026-04-30 22:59 ./usr/include/scitbx/stl/map_as_python_dict.h -rw-r--r-- root/root 283 2026-04-30 22:59 ./usr/include/scitbx/stl/map_fwd.h -rw-r--r-- root/root 8037 2026-04-30 22:59 ./usr/include/scitbx/stl/map_wrapper.h -rw-r--r-- root/root 2096 2026-04-30 22:59 ./usr/include/scitbx/stl/set_wrapper.h -rw-r--r-- root/root 1038 2026-04-30 22:59 ./usr/include/scitbx/stl/vector_as_python_list.h -rw-r--r-- root/root 306 2026-04-30 22:59 ./usr/include/scitbx/stl/vector_io.h -rw-r--r-- root/root 4019 2026-04-30 22:59 ./usr/include/scitbx/stl/vector_wrapper.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/ drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/boost_python/ -rw-r--r-- root/root 7204 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/boost_python/edge_exports.hpp -rw-r--r-- root/root 1305 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/boost_python/iterator_wrapper.hpp -rw-r--r-- root/root 248 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/boost_python/object_extensions.hpp -rw-r--r-- root/root 1600 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/boost_python/tree_exports.hpp -rw-r--r-- root/root 4163 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/builder.hpp -rw-r--r-- root/root 7108 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/edge.hpp -rw-r--r-- root/root 1008 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/exception.hpp -rw-r--r-- root/root 1599 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/glyph.hpp -rw-r--r-- root/root 3320 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/iterator.hpp -rw-r--r-- root/root 4096 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/matching_statistics.hpp -rw-r--r-- root/root 3423 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/tree.hpp -rw-r--r-- root/root 1432 2026-04-30 22:59 ./usr/include/scitbx/suffixtree/word.hpp -rw-r--r-- root/root 18201 2026-04-30 22:59 ./usr/include/scitbx/sym_mat2.h -rw-r--r-- root/root 22179 2026-04-30 22:59 ./usr/include/scitbx/sym_mat3.h -rw-r--r-- root/root 197 2026-04-30 22:59 ./usr/include/scitbx/type_holder.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/util/ -rw-r--r-- root/root 847 2026-04-30 22:59 ./usr/include/scitbx/util/cpu_timer.h -rw-r--r-- root/root 12686 2026-04-30 22:59 ./usr/include/scitbx/vec2.h -rw-r--r-- root/root 16941 2026-04-30 22:59 ./usr/include/scitbx/vec3.h -rw-r--r-- root/root 10207 2026-04-30 22:59 ./usr/include/scitbx/weighted_histogram.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/scitbx/wigner/ -rw-r--r-- root/root 5923 2026-04-30 22:59 ./usr/include/scitbx/wigner/wigner3j.h drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/smtbx/ drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/smtbx/ab_initio/ -rw-r--r-- root/root 1006 2026-04-30 22:59 ./usr/include/smtbx/ab_initio/density_modification.h drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/smtbx/boost_python/ -rw-r--r-- root/root 393 2026-05-09 14:23 ./usr/include/smtbx/boost_python/flex_fwd.h -rw-r--r-- root/root 2301 2026-04-30 22:59 ./usr/include/smtbx/error.h -rw-r--r-- root/root 476 2026-04-30 22:59 ./usr/include/smtbx/import_cctbx.h -rw-r--r-- root/root 152 2026-04-30 22:59 ./usr/include/smtbx/import_scitbx_af.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/smtbx/refinement/ drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/ -rw-r--r-- root/root 1732 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/affine.h -rw-r--r-- root/root 4433 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/direction.h -rw-r--r-- root/root 9783 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/geometrical_hydrogens.h -rw-r--r-- root/root 2539 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/occupancy.h -rw-r--r-- root/root 2394 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/proxy.h -rw-r--r-- root/root 31391 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/reparametrisation.h -rw-r--r-- root/root 3676 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/rigid.h -rw-r--r-- root/root 5965 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/same_group.h -rw-r--r-- root/root 1648 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/scaled_adp.h -rw-r--r-- root/root 3966 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/scatterer_parameters.h -rw-r--r-- root/root 3888 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/shared.h -rw-r--r-- root/root 4524 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/special_position.h -rw-r--r-- root/root 1137 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/symmetry_equivalent.h -rw-r--r-- root/root 1134 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/u_eq_dependent_u_iso.h -rw-r--r-- root/root 1015 2026-04-30 22:59 ./usr/include/smtbx/refinement/constraints/u_iso_dependent_u_iso.h -rw-r--r-- root/root 148 2026-04-30 22:59 ./usr/include/smtbx/refinement/import_cctbx_xray.h -rw-r--r-- root/root 20577 2026-04-30 22:59 ./usr/include/smtbx/refinement/least_squares.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/smtbx/refinement/restraints/ -rw-r--r-- root/root 5055 2026-04-30 22:59 ./usr/include/smtbx/refinement/restraints/origin_fixing.h -rw-r--r-- root/root 2566 2026-04-30 22:59 ./usr/include/smtbx/refinement/weighting_schemes.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/smtbx/structure_factors/ drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/smtbx/structure_factors/direct/ -rw-r--r-- root/root 52104 2026-04-30 22:59 ./usr/include/smtbx/structure_factors/direct/standard_xray.h -rw-r--r-- root/root 16076 2026-04-30 22:59 ./usr/include/smtbx/structure_factors/direct/table_based.h drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/include/spotfinder/ drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/spotfinder/applications/ -rw-r--r-- root/root 2023 2026-04-30 22:59 ./usr/include/spotfinder/applications/find_active_area.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/spotfinder/core_toolbox/ drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/spotfinder/core_toolbox/boost_python/ -rw-r--r-- root/root 3218 2026-04-30 22:59 ./usr/include/spotfinder/core_toolbox/boost_python/singlemask.h -rw-r--r-- root/root 4008 2026-04-30 22:59 ./usr/include/spotfinder/core_toolbox/distl.h -rw-r--r-- root/root 2509 2026-04-30 22:59 ./usr/include/spotfinder/core_toolbox/hough.h -rw-r--r-- root/root 15844 2026-04-30 22:59 ./usr/include/spotfinder/core_toolbox/libdistl.h -rw-r--r-- root/root 5293 2026-04-30 22:59 ./usr/include/spotfinder/core_toolbox/spot_shapes.h -rw-r--r-- root/root 276 2026-04-30 22:59 ./usr/include/spotfinder/core_toolbox/spot_types.h -rw-r--r-- root/root 4454 2026-04-30 22:59 ./usr/include/spotfinder/core_toolbox/spotfilter.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/spotfinder/dxtbx_toolbox/ -rw-r--r-- root/root 3504 2026-04-30 22:59 ./usr/include/spotfinder/dxtbx_toolbox/distl.h -rw-r--r-- root/root 837 2026-04-30 22:59 ./usr/include/spotfinder/dxtbx_toolbox/libdistl.h drwxr-xr-x root/root 0 2026-04-30 22:59 ./usr/include/tbxx/ -rw-r--r-- root/root 487 2026-04-30 22:59 ./usr/include/tbxx/alignment.h -rw-r--r-- root/root 1760 2026-04-30 22:59 ./usr/include/tbxx/error_utils.hpp -rw-r--r-- root/root 2811 2026-04-30 22:59 ./usr/include/tbxx/libc_backtrace.hpp -rw-r--r-- root/root 2857 2026-04-30 22:59 ./usr/include/tbxx/optional_copy.hpp -rw-r--r-- root/root 1493 2026-04-30 22:59 ./usr/include/tbxx/pretty_type_name.hpp -rw-r--r-- root/root 2124 2026-04-30 22:59 ./usr/include/tbxx/time_accu.hpp drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/ lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/include -> ../../../include/cctbx drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.14/ lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.14/include -> ../../../include/cctbx drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/ lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libann_adaptor.so -> libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libasymmetric_map.so -> libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libcbf-private.so -> libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libccp4io.so -> libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libcctbx.so -> libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libomptbx.so -> libomptbx.so.0.0.1 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./usr/share/doc/libcctbx-dev/changelog.Debian.gz -rw-r--r-- root/root 4896 2026-04-30 22:59 ./usr/share/doc/libcctbx-dev/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/libcctbx-dev/copyright libcctbx0-dbgsym_2026.4+ds2+~3.28.0+ds1-2_loong64.deb ----------------------------------------------------- new Debian package, version 2.0. size 9955916 bytes: control archive=1480 bytes. 1157 bytes, 12 lines control 2105 bytes, 20 lines md5sums Package: libcctbx0-dbgsym Source: cctbx Version: 2026.4+ds2+~3.28.0+ds1-2 Auto-Built-Package: debug-symbols Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 13804 Depends: libcctbx0 (= 2026.4+ds2+~3.28.0+ds1-2) Section: debug Priority: optional Description: debug symbols for libcctbx0 Build-Ids: 0f39e3d2996f54942c8be9e0ea8c3e261bfb049a 228dae0f7f902b3d342d45bddaee0eb47a701802 2bd78866d0b3aacd4294a144818d5a4b36dbcac9 5bc0e9055995ef7fb689c2efda2d58609988e8b6 65c270dbe10e066fb3860bb59a71dad640a0d8a3 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libcctbx0_2026.4+ds2+~3.28.0+ds1-2_loong64.deb ---------------------------------------------- new Debian package, version 2.0. size 2281548 bytes: control archive=2552 bytes. 3055 bytes, 55 lines control 1901 bytes, 22 lines md5sums 1057 bytes, 19 lines shlibs 66 bytes, 2 lines triggers Package: libcctbx0 Source: cctbx Version: 2026.4+ds2+~3.28.0+ds1-2 Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 11963 Depends: libann-cctbx0 (>= 1.1.2+doc), libboost-python1.90.0 (>= 1.90.0), libboost-python1.90.0-py313, libc6 (>= 2.42), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - runtime libraries Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide the cctbx runtime libraries. drwxr-xr-x root/root 0 2026-05-09 14:23 ./ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/ lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 -rw-r--r-- root/root 68936 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 -rw-r--r-- root/root 535256 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libcbf-private.so.0 -> libcbf-private.so.0.0.1 -rw-r--r-- root/root 134800 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 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./usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 -rw-r--r-- root/root 1652848 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 -rw-r--r-- root/root 135256 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 -rw-r--r-- root/root 402208 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 -rw-r--r-- root/root 134728 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libomptbx.so.0 -> libomptbx.so.0.0.1 -rw-r--r-- root/root 67672 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/librstbx.so.0 -> librstbx.so.0.0.1 -rw-r--r-- root/root 201600 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 -rw-r--r-- root/root 68472 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 -rw-r--r-- root/root 68104 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 -rw-r--r-- root/root 67640 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 -rw-r--r-- root/root 663376 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libspotfinder.so.0 -> libspotfinder.so.0.0.1 -rw-r--r-- root/root 469224 2026-05-09 14:23 ./usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/share/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/share/doc/libcctbx0/ -rw-r--r-- root/root 2170 2026-05-09 14:23 ./usr/share/doc/libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 4896 2026-04-30 22:59 ./usr/share/doc/libcctbx0/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/libcctbx0/copyright python3-cctbx-dbgsym_2026.4+ds2+~3.28.0+ds1-2_loong64.deb --------------------------------------------------------- new Debian package, version 2.0. size 290482292 bytes: control archive=17316 bytes. 16627 bytes, 12 lines control 42071 bytes, 397 lines md5sums Package: python3-cctbx-dbgsym Source: cctbx Version: 2026.4+ds2+~3.28.0+ds1-2 Auto-Built-Package: debug-symbols Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 557709 Depends: python3-cctbx (= 2026.4+ds2+~3.28.0+ds1-2) Section: debug Priority: optional Description: debug symbols for python3-cctbx Build-Ids: 00d02d7c984e62691572f79d80e5242b6c231554 01960f85a36ba8e1fb7fa6a47a76ae50da3ed179 0213364f64a5e1c4940625a18d2f78b97c9c917b 02c773a9a0a1d0ab34a525c0c654046c3c82e178 03fd93cea1a88b0a07e1b8bc633ce3bded134ec2 056245772d24aef15fac0807478ef631fbcb0675 058bf0900cc1bf4bcbaa7c488999c5786bfce5dc 059a68cfb67f3d33d488c89a05a4c98a6d8bf2ac 05f4f7ba5d6a4fc20d6f758940d9f47f6ff2441c 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python3-cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.deb -------------------------------------------------- new Debian package, version 2.0. size 132104588 bytes: control archive=128904 bytes. 3933 bytes, 55 lines control 515313 bytes, 5234 lines md5sums 285 bytes, 12 lines * postinst #!/bin/sh 423 bytes, 12 lines * prerm #!/bin/sh Package: python3-cctbx Source: cctbx Version: 2026.4+ds2+~3.28.0+ds1-2 Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 599805 Depends: ca-certificates, libcctbx-dev (= 2026.4+ds2+~3.28.0+ds1-2), libcctbx0 (= 2026.4+ds2+~3.28.0+ds1-2), python3-legacy-cgi, python3-pycbf (>= 0.9.7+dfsg1-2~), tcsh | csh | c-shell, python3 (<< 3.15), python3 (>= 3.13~), python3-h5py (>= 3), python3-hdf5plugin, python3-matplotlib, python3-mrcfile, python3-natsort, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-nxmx, python3-ordered-set, python3-pil, python3-pint, python3-procrunner, python3-pymol, python3-requests, python3-scipy, python3-six, python3-tqdm, python3-wxgtk4.0, python3:any, libantlr3c-3.4-0 | libantlr3c-antlrdbg-3.4-0, libboost-numpy1.90.0 (>= 1.90.0), libboost-numpy1.90.0-py313, libboost-numpy1.90.0-py314, libboost-python1.90.0 (>= 1.90.0), libboost-python1.90.0-py313, libboost-python1.90.0-py314, libboost-thread1.90.0 (>= 1.90.0), libboost-timer1.90.0 (>= 1.90.0), libc6 (>= 2.42), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.5), libgl1, libglu1-mesa | libglu1, libhdf5-310 (>= 1.14.3), libmmdb2-0 (>= 2.0.22), libssm2 (>= 1.4.0), libstdc++6 (>= 14) Section: python Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Python Toolbox for crystallography Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide a selected collection of python modules from the cctbx project. drwxr-xr-x root/root 0 2026-05-09 14:23 ./ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/bin/ -rwxr-xr-x root/root 3202 2026-05-09 14:23 ./usr/bin/annlib.python -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/annlib.show_build_path -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/annlib.show_dist_paths -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/boost.gcd -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/boost.lcm -rwxr-xr-x root/root 3201 2026-05-09 14:23 ./usr/bin/boost.python -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/boost.show_build_path -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/boost.show_dist_paths -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/boost_adaptbx.divide_by_zero -rwxr-xr-x root/root 3773 2026-05-09 14:23 ./usr/bin/boost_adaptbx.double_overflow -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/boost_adaptbx.inexact -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/boost_adaptbx.int_overflow -rwxr-xr-x root/root 3853 2026-05-09 14:23 ./usr/bin/boost_adaptbx.nested_cpp_loops_with_check_signals -rwxr-xr-x root/root 3785 2026-05-09 14:23 ./usr/bin/boost_adaptbx.segmentation_fault -rwxr-xr-x root/root 3785 2026-05-09 14:23 ./usr/bin/boost_adaptbx.show_environ_usage -rwxr-xr-x root/root 3785 2026-05-09 14:23 ./usr/bin/boost_adaptbx.show_platform_info -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/cbf.dump -rwxr-xr-x root/root 3202 2026-05-09 14:23 ./usr/bin/cbflib.python -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/cbflib.show_build_path -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/cbflib.show_dist_paths -rwxr-xr-x root/root 68072 2026-05-09 14:23 ./usr/bin/cbflib.tst_memory -rwxr-xr-x root/root 3202 2026-05-09 14:23 ./usr/bin/ccp4io.python -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/ccp4io.show_build_path -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/ccp4io.show_dist_paths -rwxr-xr-x root/root 3712 2026-05-09 14:23 ./usr/bin/cctbx.HKLinfo -rwxr-xr-x root/root 3720 2026-05-09 14:23 ./usr/bin/cctbx.HKLviewer -rwxr-xr-x root/root 3780 2026-05-09 14:23 ./usr/bin/cctbx.brehm_diederichs -rwxr-xr-x root/root 3765 2026-05-09 14:23 ./usr/bin/cctbx.cod_select_and_pickle -rwxr-xr-x root/root 67952 2026-05-09 14:23 ./usr/bin/cctbx.convert_ccp4_symop_lib -rwxr-xr-x root/root 3783 2026-05-09 14:23 ./usr/bin/cctbx.data_viewer -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/cctbx.eltbx.show_fp_fdp -rwxr-xr-x root/root 3777 2026-05-09 14:23 ./usr/bin/cctbx.euclidean_model_matching -rwxr-xr-x root/root 330624 2026-05-09 14:23 ./usr/bin/cctbx.find_distances -rwxr-xr-x root/root 68264 2026-05-09 14:23 ./usr/bin/cctbx.getting_started -rwxr-xr-x root/root 3793 2026-05-09 14:23 ./usr/bin/cctbx.image_viewer -rwxr-xr-x root/root 199552 2026-05-09 14:23 ./usr/bin/cctbx.lattice_symmetry -rwxr-xr-x root/root 3780 2026-05-09 14:23 ./usr/bin/cctbx.loggraph -rwxr-xr-x root/root 3808 2026-05-09 14:23 ./usr/bin/cctbx.make_install_HKLviewer_ChimeraX -rwxr-xr-x root/root 3827 2026-05-09 14:23 ./usr/bin/cctbx.multiplicity_viewer -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/cctbx.patterson_map -rwxr-xr-x root/root 3848 2026-05-09 14:23 ./usr/bin/cctbx.plot_anomalous_scattering -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/cctbx.precession_view -rwxr-xr-x root/root 3201 2026-05-09 14:23 ./usr/bin/cctbx.python -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/cctbx.show_build_path -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/cctbx.show_dist_paths -rwxr-xr-x root/root 3777 2026-05-09 14:23 ./usr/bin/cctbx.show_systematic_absences -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/cctbx.space_group_info -rwxr-xr-x root/root 3777 2026-05-09 14:23 ./usr/bin/cctbx.structure_factor_timings -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/cctbx.subgroups -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/cctbx.suitename -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/cctbx.suitename_old -rwxr-xr-x root/root 133896 2026-05-09 14:23 ./usr/bin/cctbx.sym_equiv_sites -rwxr-xr-x root/root 67648 2026-05-09 14:23 ./usr/bin/cctbx.sys_abs_equiv_space_groups -rwxr-xr-x root/root 3709 2026-05-09 14:23 ./usr/bin/cctbx.version -rwxr-xr-x root/root 3827 2026-05-09 14:23 ./usr/bin/cctbx.visualize_r_factors -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/cctbx.wavelength_units -rwxr-xr-x root/root 3680 2026-05-09 14:23 ./usr/bin/cctbx.web.install -rwxr-xr-x root/root 3549 2026-05-09 14:23 ./usr/bin/cctbx.wxpython -rwxr-xr-x root/root 133920 2026-05-09 14:23 ./usr/bin/cctbx_blobs -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/cctbx_regression.test_nightly -rwxr-xr-x root/root 3202 2026-05-09 14:23 ./usr/bin/cma_es.python -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/cma_es.show_build_path -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/cma_es.show_dist_paths -rwxr-xr-x root/root 3800 2026-05-09 14:23 ./usr/bin/crys3d.model_viewer -rwxr-xr-x root/root 3202 2026-05-09 14:23 ./usr/bin/crys3d.python -rwxr-xr-x root/root 3765 2026-05-09 14:23 ./usr/bin/crys3d.qttbx.view_structure -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/crys3d.show_build_path -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/crys3d.show_dist_paths -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/cxi.image2pickle -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/cxi.image_average -rwxr-xr-x root/root 3763 2026-05-09 14:23 ./usr/bin/dev.dxtbx.debug_memory -rwxr-xr-x root/root 3767 2026-05-09 14:23 ./usr/bin/dev.dxtbx.read_sequence -rwxr-xr-x root/root 3760 2026-05-09 14:23 ./usr/bin/distl.find_active_area -rwxr-xr-x root/root 3811 2026-05-09 14:23 ./usr/bin/distl.image_viewer -rwxr-xr-x root/root 3816 2026-05-09 14:23 ./usr/bin/distl.mp_spotfinder_server_read_file -rwxr-xr-x root/root 3756 2026-05-09 14:23 ./usr/bin/distl.signal_strength -rwxr-xr-x root/root 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2026-05-09 14:23 ./usr/bin/iotbx.cif.validate -rwxr-xr-x root/root 3721 2026-05-09 14:23 ./usr/bin/iotbx.cif_as_mtz -rwxr-xr-x root/root 3721 2026-05-09 14:23 ./usr/bin/iotbx.cif_as_pdb -rwxr-xr-x root/root 3765 2026-05-09 14:23 ./usr/bin/iotbx.cns.reflection_reader -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/iotbx.cns.sdb_reader -rwxr-xr-x root/root 3797 2026-05-09 14:23 ./usr/bin/iotbx.cns.transfer_crystal_symmetry -rwxr-xr-x root/root 3781 2026-05-09 14:23 ./usr/bin/iotbx.crystal_symmetry_from_any -rwxr-xr-x root/root 3753 2026-05-09 14:23 ./usr/bin/iotbx.dano_as_amplitudes -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/iotbx.distance_least_squares -rwxr-xr-x root/root 3729 2026-05-09 14:23 ./usr/bin/iotbx.dtrek.to_cns -rwxr-xr-x root/root 3697 2026-05-09 14:23 ./usr/bin/iotbx.emma -rwxr-xr-x root/root 3781 2026-05-09 14:23 ./usr/bin/iotbx.export_scalepack_unmerged -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/iotbx.fetch_pdb -rwxr-xr-x root/root 3725 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3817 2026-05-09 14:23 ./usr/bin/libtbx.create_cctbx_bundle_for_installer -rwxr-xr-x root/root 3785 2026-05-09 14:23 ./usr/bin/libtbx.create_install_script_bat -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/libtbx.create_installer -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/libtbx.create_mac_app -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/libtbx.create_selfx -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/libtbx.create_unzipsfx -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/libtbx.create_windows_exe -rwxr-xr-x root/root 3649 2026-05-09 14:23 ./usr/bin/libtbx.csh -rwxr-xr-x root/root 3709 2026-05-09 14:23 ./usr/bin/libtbx.dtrace -rwxr-xr-x root/root 3721 2026-05-09 14:23 ./usr/bin/libtbx.easy_qsub -rwxr-xr-x root/root 3713 2026-05-09 14:23 ./usr/bin/libtbx.env_run -rwxr-xr-x root/root 3725 2026-05-09 14:23 ./usr/bin/libtbx.epydoc_run -rwxr-xr-x root/root 3653 2026-05-09 14:23 ./usr/bin/libtbx.exec -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/libtbx.extract_code_from_txt -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/libtbx.find_clutter -rwxr-xr-x root/root 3725 2026-05-09 14:23 ./usr/bin/libtbx.find_files -rwxr-xr-x root/root 3765 2026-05-09 14:23 ./usr/bin/libtbx.find_in_repositories -rwxr-xr-x root/root 3773 2026-05-09 14:23 ./usr/bin/libtbx.find_old_style_classes -rwxr-xr-x root/root 3777 2026-05-09 14:23 ./usr/bin/libtbx.find_pdb_mmcif_problems -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/libtbx.find_reserved_names -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/libtbx.find_under_build -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/libtbx.find_untested -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/libtbx.find_unused_imports -rwxr-xr-x root/root 3785 2026-05-09 14:23 ./usr/bin/libtbx.find_unused_imports_crude -rwxr-xr-x root/root 3649 2026-05-09 14:23 ./usr/bin/libtbx.gdb -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/libtbx.git_avoid_merges -rwxr-xr-x root/root 3701 2026-05-09 14:23 ./usr/bin/libtbx.help -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/libtbx.import_all_ext -rwxr-xr-x root/root 3753 2026-05-09 14:23 ./usr/bin/libtbx.import_all_python -rwxr-xr-x root/root 3713 2026-05-09 14:23 ./usr/bin/libtbx.install -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/libtbx.install_conda -rwxr-xr-x root/root 3657 2026-05-09 14:23 ./usr/bin/libtbx.latex -rwxr-xr-x root/root 3725 2026-05-09 14:23 ./usr/bin/libtbx.line_count -rwxr-xr-x root/root 3725 2026-05-09 14:23 ./usr/bin/libtbx.list_files -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/libtbx.list_modules -rwxr-xr-x root/root 3813 2026-05-09 14:23 ./usr/bin/libtbx.list_source_files_sorted_by_size -rwxr-xr-x root/root 3721 2026-05-09 14:23 ./usr/bin/libtbx.make_dist -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/libtbx.make_sphinx_html -rwxr-xr-x root/root 3709 2026-05-09 14:23 ./usr/bin/libtbx.nequal -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/libtbx.parallel_simple -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/libtbx.path_utility -rwxr-xr-x root/root 3669 2026-05-09 14:23 ./usr/bin/libtbx.pdflatex -rwxr-xr-x root/root 3701 2026-05-09 14:23 ./usr/bin/libtbx.phil -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/libtbx.prime_factors_of -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/libtbx.printenv -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/libtbx.py_compile_all -rwxr-xr-x root/root 3202 2026-05-09 14:23 ./usr/bin/libtbx.python -rwxr-xr-x root/root 3793 2026-05-09 14:23 ./usr/bin/libtbx.raise_exception_for_testing -rwxr-xr-x root/root 3665 2026-05-09 14:23 ./usr/bin/libtbx.refresh -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/libtbx.reindent -rwxr-xr-x root/root 3753 2026-05-09 14:23 ./usr/bin/libtbx.remote_processing -rwxr-xr-x root/root 3729 2026-05-09 14:23 ./usr/bin/libtbx.remove_tree -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/libtbx.remove_unused_imports -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/libtbx.resource_monitor_plot -rwxr-xr-x root/root 3765 2026-05-09 14:23 ./usr/bin/libtbx.run_pickled_function -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/libtbx.run_tests_parallel -rwxr-xr-x root/root 3705 2026-05-09 14:23 ./usr/bin/libtbx.scons -rwxr-xr-x root/root 3777 2026-05-09 14:23 ./usr/bin/libtbx.seconds_since_the_epoch -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/libtbx.sge_available_slots -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/libtbx.sge_qstat_counts -rwxr-xr-x root/root 3645 2026-05-09 14:23 ./usr/bin/libtbx.sh -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/libtbx.show_all_on_path -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/libtbx.show_bin_path -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/libtbx.show_build_options -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/libtbx.show_build_path -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/libtbx.show_but_no_repr -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/libtbx.show_commands -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/libtbx.show_date_and_time -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/libtbx.show_dist_paths -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/libtbx.show_env -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/libtbx.show_environ_usage -rwxr-xr-x root/root 3773 2026-05-09 14:23 ./usr/bin/libtbx.show_full_command_path -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/libtbx.show_host_and_user -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/libtbx.show_include_paths -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/libtbx.show_lib_path -rwxr-xr-x root/root 3781 2026-05-09 14:23 ./usr/bin/libtbx.show_module_dependencies -rwxr-xr-x root/root 3785 2026-05-09 14:23 ./usr/bin/libtbx.show_number_of_processors -rwxr-xr-x root/root 3765 2026-05-09 14:23 ./usr/bin/libtbx.show_numeric_version -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/libtbx.show_numpy_version -rwxr-xr-x root/root 3781 2026-05-09 14:23 ./usr/bin/libtbx.show_python_dependencies -rwxr-xr-x root/root 3789 2026-05-09 14:23 ./usr/bin/libtbx.show_python_sys_executable -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/libtbx.show_pythonpath -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/libtbx.show_repository_paths -rwxr-xr-x root/root 3725 2026-05-09 14:23 ./usr/bin/libtbx.show_tests -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/libtbx.show_variable_names -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/libtbx.start_binary_bundle -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/libtbx.start_process -rwxr-xr-x root/root 3653 2026-05-09 14:23 ./usr/bin/libtbx.tcsh -rwxr-xr-x root/root 3708 2026-05-09 14:23 ./usr/bin/libtbx.unpack_in_sources -rwxr-xr-x root/root 3669 2026-05-09 14:23 ./usr/bin/libtbx.valgrind -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/libtbx.wait_for_file -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/mmtbx.TAAM_minus_IAM -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/mmtbx.altloc_remediate -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/mmtbx.apply_ncs_to_ligand -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/mmtbx.arginine_geometry -rwxr-xr-x root/root 3778 2026-05-09 14:23 ./usr/bin/mmtbx.bfactor_plot -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/mmtbx.clashscore2 -rwxr-xr-x root/root 3735 2026-05-09 14:23 ./usr/bin/mmtbx.debugging.hydrogenate -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/mmtbx.debugging.riding -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/mmtbx.density_modification -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/mmtbx.development.aev -rwxr-xr-x root/root 3729 2026-05-09 14:23 ./usr/bin/mmtbx.development.electrons -rwxr-xr-x root/root 3805 2026-05-09 14:23 ./usr/bin/mmtbx.development.ligand_restraints_validation -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/mmtbx.development.qscore -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/mmtbx.development.validate_ligands -rwxr-xr-x root/root 3753 2026-05-09 14:23 ./usr/bin/mmtbx.development.water_b_factors -rwxr-xr-x root/root 3824 2026-05-09 14:23 ./usr/bin/mmtbx.distance_difference -rwxr-xr-x root/root 3737 2026-05-09 14:23 ./usr/bin/mmtbx.emringer_score -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/mmtbx.estimate_bijvoet_ratio -rwxr-xr-x root/root 3705 2026-05-09 14:23 ./usr/bin/mmtbx.fft -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/mmtbx.find_peaks_holes -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/mmtbx.find_residue_in_pdb -rwxr-xr-x root/root 3817 2026-05-09 14:23 ./usr/bin/mmtbx.holton_geometry_validation -rwxr-xr-x root/root 3729 2026-05-09 14:23 ./usr/bin/mmtbx.massage_data -rwxr-xr-x root/root 3713 2026-05-09 14:23 ./usr/bin/mmtbx.matthews -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/mmtbx.model_vs_data -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/mmtbx.model_vs_sequence -rwxr-xr-x root/root 3753 2026-05-09 14:23 ./usr/bin/mmtbx.mon_lib_cif_triage -rwxr-xr-x root/root 3705 2026-05-09 14:23 ./usr/bin/mmtbx.mp_geo -rwxr-xr-x root/root 3753 2026-05-09 14:23 ./usr/bin/mmtbx.nonbonded_overlaps -rwxr-xr-x root/root 3753 2026-05-09 14:23 ./usr/bin/mmtbx.pdb_interpretation -rwxr-xr-x root/root 3804 2026-05-09 14:23 ./usr/bin/mmtbx.pdb_statistics -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/mmtbx.plan_sad_experiment -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/mmtbx.prepare_pdb_deposition -rwxr-xr-x root/root 3705 2026-05-09 14:23 ./usr/bin/mmtbx.probe2 -rwxr-xr-x root/root 3773 2026-05-09 14:23 ./usr/bin/mmtbx.process_predicted_model -rwxr-xr-x root/root 3725 2026-05-09 14:23 ./usr/bin/mmtbx.prune_model -rwxr-xr-x root/root 3201 2026-05-09 14:23 ./usr/bin/mmtbx.python -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/mmtbx.quantum_interface -rwxr-xr-x root/root 3705 2026-05-09 14:23 ./usr/bin/mmtbx.rama_z -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/mmtbx.rebuild_cablam_cache -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/mmtbx.rebuild_rotarama_cache -rwxr-xr-x root/root 3709 2026-05-09 14:23 ./usr/bin/mmtbx.reduce2 -rwxr-xr-x root/root 3777 2026-05-09 14:23 ./usr/bin/mmtbx.reduce_cryoem_resolution -rwxr-xr-x root/root 3797 2026-05-09 14:23 ./usr/bin/mmtbx.refine_anomalous_substructure -rwxr-xr-x root/root 3709 2026-05-09 14:23 ./usr/bin/mmtbx.ribbons -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/mmtbx.rigid_bond_test -rwxr-xr-x root/root 3760 2026-05-09 14:23 ./usr/bin/mmtbx.ringer -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/mmtbx.search_pdb_symmetry -rwxr-xr-x root/root 3785 2026-05-09 14:23 ./usr/bin/mmtbx.select_best_starting_model -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/mmtbx.show_build_path -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/mmtbx.show_dist_paths -rwxr-xr-x root/root 3773 2026-05-09 14:23 ./usr/bin/mmtbx.show_r_factors_by_shell -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/mmtbx.ss_idealization -rwxr-xr-x root/root 3701 2026-05-09 14:23 ./usr/bin/mmtbx.super -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/mmtbx.superpose -rwxr-xr-x root/root 3717 2026-05-09 14:23 ./usr/bin/mmtbx.table_one -rwxr-xr-x root/root 3760 2026-05-09 14:23 ./usr/bin/mmtbx.undowser2_validation -rwxr-xr-x root/root 3753 2026-05-09 14:23 ./usr/bin/mmtbx.validation_summary -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/mmtbx.verify_mon_lib_data -rwxr-xr-x root/root 3769 2026-05-09 14:23 ./usr/bin/mmtbx.where_is_that_cif_file -rwxr-xr-x root/root 3709 2026-05-09 14:23 ./usr/bin/mmtbx.xtriage -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/mmtbx.xtriage_gui -rwxr-xr-x root/root 3766 2026-05-09 14:23 ./usr/bin/molprobity.barbed_wire_analysis -rwxr-xr-x root/root 3742 2026-05-09 14:23 ./usr/bin/molprobity.cablam -rwxr-xr-x root/root 3750 2026-05-09 14:23 ./usr/bin/molprobity.cbetadev -rwxr-xr-x root/root 3786 2026-05-09 14:23 ./usr/bin/molprobity.chiral_validation -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/molprobity.clashscore -rwxr-xr-x root/root 3762 2026-05-09 14:23 ./usr/bin/molprobity.clashscore2 -rwxr-xr-x root/root 3718 2026-05-09 14:23 ./usr/bin/molprobity.kinemage -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/molprobity.molprobity -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/molprobity.mp_validate_bonds -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/molprobity.omegalyze -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/molprobity.probescore_ligand -rwxr-xr-x root/root 3750 2026-05-09 14:23 ./usr/bin/molprobity.ramalyze -rwxr-xr-x root/root 3734 2026-05-09 14:23 ./usr/bin/molprobity.rna_validate -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/molprobity.rna_validate_bonds -rwxr-xr-x root/root 3766 2026-05-09 14:23 ./usr/bin/molprobity.rna_validate_puckers -rwxr-xr-x root/root 3762 2026-05-09 14:23 ./usr/bin/molprobity.rna_validate_suites -rwxr-xr-x root/root 3750 2026-05-09 14:23 ./usr/bin/molprobity.rotalyze -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/molprobity.suitename -rwxr-xr-x root/root 3738 2026-05-09 14:23 ./usr/bin/molprobity.suitename_old -rwxr-xr-x root/root 3765 2026-05-09 14:23 ./usr/bin/molprobity.undowser2_validation -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/molprobity.undowser_validation -rwxr-xr-x root/root 3202 2026-05-09 14:23 ./usr/bin/omptbx.python -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/omptbx.show_build_path -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/omptbx.show_dist_paths -rwxr-xr-x root/root 3724 2026-05-09 14:23 ./usr/bin/phasertng.HKLviewer -rwxr-xr-x root/root 3713 2026-05-09 14:23 ./usr/bin/phenix.HKLinfo -rwxr-xr-x root/root 3721 2026-05-09 14:23 ./usr/bin/phenix.HKLviewer -rwxr-xr-x root/root 3738 2026-05-09 14:23 ./usr/bin/phenix.TAAM_minus_IAM -rwxr-xr-x root/root 3702 2026-05-09 14:23 ./usr/bin/phenix.angle -rwxr-xr-x root/root 3730 2026-05-09 14:23 ./usr/bin/phenix.auto_sharpen -rwxr-xr-x root/root 3762 2026-05-09 14:23 ./usr/bin/phenix.barbed_wire_analysis -rwxr-xr-x root/root 3738 2026-05-09 14:23 ./usr/bin/phenix.cablam -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/phenix.cablam_idealization -rwxr-xr-x root/root 3746 2026-05-09 14:23 ./usr/bin/phenix.cbetadev -rwxr-xr-x root/root 3710 2026-05-09 14:23 ./usr/bin/phenix.cc_star -rwxr-xr-x root/root 3782 2026-05-09 14:23 ./usr/bin/phenix.chiral_validation -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/phenix.cif_as_mtz -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/phenix.cif_as_pdb -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/phenix.clashscore -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/phenix.clashscore2 -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/phenix.cns_as_mtz -rwxr-xr-x root/root 3718 2026-05-09 14:23 ./usr/bin/phenix.comparama -rwxr-xr-x root/root 3816 2026-05-09 14:23 ./usr/bin/phenix.compare_datasets -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/phenix.csv_as_mtz -rwxr-xr-x root/root 3784 2026-05-09 14:23 ./usr/bin/phenix.data_viewer -rwxr-xr-x root/root 3774 2026-05-09 14:23 ./usr/bin/phenix.development.next_gen_atom_typing -rwxr-xr-x root/root 3765 2026-05-09 14:23 ./usr/bin/phenix.development.valence_simple -rwxr-xr-x root/root 3726 2026-05-09 14:23 ./usr/bin/phenix.development.xtrapol8 -rwxr-xr-x root/root 3710 2026-05-09 14:23 ./usr/bin/phenix.diffuse -rwxr-xr-x root/root 3714 2026-05-09 14:23 ./usr/bin/phenix.dynamics -rwxr-xr-x root/root 3698 2026-05-09 14:23 ./usr/bin/phenix.emma -rwxr-xr-x root/root 3771 2026-05-09 14:23 ./usr/bin/phenix.emringer -rwxr-xr-x root/root 3805 2026-05-09 14:23 ./usr/bin/phenix.example_viewer -rwxr-xr-x root/root 3774 2026-05-09 14:23 ./usr/bin/phenix.explore_metric_symmetry -rwxr-xr-x root/root 3698 2026-05-09 14:23 ./usr/bin/phenix.f000 -rwxr-xr-x root/root 3742 2026-05-09 14:23 ./usr/bin/phenix.fab_elbow_angle -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/phenix.fake_f_obs -rwxr-xr-x root/root 3747 2026-05-09 14:23 ./usr/bin/phenix.feature_enhanced_map -rwxr-xr-x root/root 3730 2026-05-09 14:23 ./usr/bin/phenix.fem -rwxr-xr-x root/root 3718 2026-05-09 14:23 ./usr/bin/phenix.fetch_pdb -rwxr-xr-x root/root 3706 2026-05-09 14:23 ./usr/bin/phenix.fft -rwxr-xr-x root/root 3746 2026-05-09 14:23 ./usr/bin/phenix.find_peaks_holes -rwxr-xr-x root/root 3778 2026-05-09 14:23 ./usr/bin/phenix.find_reticular_twin_laws -rwxr-xr-x root/root 3742 2026-05-09 14:23 ./usr/bin/phenix.find_tls_groups -rwxr-xr-x root/root 3706 2026-05-09 14:23 ./usr/bin/phenix.fmodel -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/phenix.fobs_minus_fobs_map -rwxr-xr-x root/root 3750 2026-05-09 14:23 ./usr/bin/phenix.form_factor_query -rwxr-xr-x root/root 3734 2026-05-09 14:23 ./usr/bin/phenix.french_wilson -rwxr-xr-x root/root 3766 2026-05-09 14:23 ./usr/bin/phenix.geometry_minimization -rwxr-xr-x root/root 3730 2026-05-09 14:23 ./usr/bin/phenix.grow_density -rwxr-xr-x root/root 3702 2026-05-09 14:23 ./usr/bin/phenix.hbond -rwxr-xr-x root/root 3798 2026-05-09 14:23 ./usr/bin/phenix.helix_sheet_recs_as_pdb_files -rwxr-xr-x root/root 3818 2026-05-09 14:23 ./usr/bin/phenix.holton_geometry_validation -rwxr-xr-x root/root 3779 2026-05-09 14:23 ./usr/bin/phenix.image_viewer -rwxr-xr-x root/root 3714 2026-05-09 14:23 ./usr/bin/phenix.kinemage -rwxr-xr-x root/root 3710 2026-05-09 14:23 ./usr/bin/phenix.map_box -rwxr-xr-x root/root 3738 2026-05-09 14:23 ./usr/bin/phenix.map_comparison -rwxr-xr-x root/root 3770 2026-05-09 14:23 ./usr/bin/phenix.map_to_model_histogram -rwxr-xr-x root/root 3778 2026-05-09 14:23 ./usr/bin/phenix.map_to_structure_factors -rwxr-xr-x root/root 3698 2026-05-09 14:23 ./usr/bin/phenix.maps -rwxr-xr-x root/root 3698 2026-05-09 14:23 ./usr/bin/phenix.mask -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/phenix.maximum_entropy_map -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/phenix.merging_statistics -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/phenix.model_idealization -rwxr-xr-x root/root 3718 2026-05-09 14:23 ./usr/bin/phenix.model_map -rwxr-xr-x root/root 3766 2026-05-09 14:23 ./usr/bin/phenix.model_model_distances -rwxr-xr-x root/root 3730 2026-05-09 14:23 ./usr/bin/phenix.model_vs_map -rwxr-xr-x root/root 3750 2026-05-09 14:23 ./usr/bin/phenix.model_vs_sequence -rwxr-xr-x root/root 3746 2026-05-09 14:23 ./usr/bin/phenix.models_as_chains -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/phenix.molprobity -rwxr-xr-x root/root 3750 2026-05-09 14:23 ./usr/bin/phenix.mp_validate_bonds -rwxr-xr-x root/root 3714 2026-05-09 14:23 ./usr/bin/phenix.mtz.dump -rwxr-xr-x root/root 3710 2026-05-09 14:23 ./usr/bin/phenix.mtz2map -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/phenix.mtz_as_cif -rwxr-xr-x root/root 3718 2026-05-09 14:23 ./usr/bin/phenix.omegalyze -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/phenix.pdb.b_factor_stats -rwxr-xr-x root/root 3766 2026-05-09 14:23 ./usr/bin/phenix.pdb.biomt_reconstruction -rwxr-xr-x root/root 3734 2026-05-09 14:23 ./usr/bin/phenix.pdb.hierarchy -rwxr-xr-x root/root 3766 2026-05-09 14:23 ./usr/bin/phenix.pdb.mtrix_reconstruction -rwxr-xr-x root/root 3722 2026-05-09 14:23 ./usr/bin/phenix.pdb_as_cif -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/phenix.pdb_atom_selection -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/phenix.pdb_cif_conversion -rwxr-xr-x root/root 3789 2026-05-09 14:23 ./usr/bin/phenix.pdb_editor -rwxr-xr-x root/root 3754 2026-05-09 14:23 ./usr/bin/phenix.pdb_interpretation -rwxr-xr-x root/root 3714 2026-05-09 14:23 ./usr/bin/phenix.pdbtools -rwxr-xr-x root/root 3710 2026-05-09 14:23 ./usr/bin/phenix.perigee -rwxr-xr-x root/root 3706 2026-05-09 14:23 ./usr/bin/phenix.polder -rwxr-xr-x root/root 3774 2026-05-09 14:23 ./usr/bin/phenix.process_predicted_model -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/phenix.r_factor_statistics -rwxr-xr-x root/root 3706 2026-05-09 14:23 ./usr/bin/phenix.rama_z -rwxr-xr-x root/root 3746 2026-05-09 14:23 ./usr/bin/phenix.ramalyze -rwxr-xr-x root/root 3738 2026-05-09 14:23 ./usr/bin/phenix.rank_scale_map -rwxr-xr-x root/root 3770 2026-05-09 14:23 ./usr/bin/phenix.real_space_correlation -rwxr-xr-x root/root 3758 2026-05-09 14:23 ./usr/bin/phenix.real_space_diff_map -rwxr-xr-x root/root 3774 2026-05-09 14:23 ./usr/bin/phenix.reciprocal_space_arrays -rwxr-xr-x root/root 3778 2026-05-09 14:23 ./usr/bin/phenix.reduce_cryoem_resolution -rwxr-xr-x root/root 3782 2026-05-09 14:23 ./usr/bin/phenix.reflection_file_converter -rwxr-xr-x root/root 3766 2026-05-09 14:23 ./usr/bin/phenix.reflection_statistics -rwxr-xr-x root/root 3710 2026-05-09 14:23 ./usr/bin/phenix.reindex -rwxr-xr-x root/root 3742 2026-05-09 14:23 ./usr/bin/phenix.remove_outliers -rwxr-xr-x root/root 3752 2026-05-09 14:23 ./usr/bin/phenix.resolution -rwxr-xr-x root/root 3730 2026-05-09 14:23 ./usr/bin/phenix.rna_validate -rwxr-xr-x root/root 3754 2026-05-09 14:23 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./usr/bin/phenix.tls_as_xyz -rwxr-xr-x root/root 3761 2026-05-09 14:23 ./usr/bin/phenix.undowser2_validation -rwxr-xr-x root/root 3757 2026-05-09 14:23 ./usr/bin/phenix.undowser_validation -rwxr-xr-x root/root 3750 2026-05-09 14:23 ./usr/bin/phenix.unique_with_biomt -rwxr-xr-x root/root 3743 2026-05-09 14:23 ./usr/bin/phenix.validate_H -rwxr-xr-x root/root 3706 2026-05-09 14:23 ./usr/bin/phenix.xmanip -rwxr-xr-x root/root 3710 2026-05-09 14:23 ./usr/bin/phenix.xtriage -rwxr-xr-x root/root 3756 2026-05-09 14:23 ./usr/bin/rstbx.index -rwxr-xr-x root/root 3201 2026-05-09 14:23 ./usr/bin/rstbx.python -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/rstbx.show_build_path -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/rstbx.show_dist_paths -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/rstbx.simage.create -rwxr-xr-x root/root 3844 2026-05-09 14:23 ./usr/bin/rstbx.simage.explore_completeness -rwxr-xr-x root/root 3733 2026-05-09 14:23 ./usr/bin/rstbx.simage.solver -rwxr-xr-x root/root 3804 2026-05-09 14:23 ./usr/bin/rstbx.simage.wx_display -rwxr-xr-x root/root 3719 2026-05-09 14:23 ./usr/bin/samosa.join -rwxr-xr-x root/root 3723 2026-05-09 14:23 ./usr/bin/samosa.scale -rwxr-xr-x root/root 3765 2026-05-09 14:23 ./usr/bin/scitbx.apply_tapenade_hints -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/scitbx.generate_error_h -rwxr-xr-x root/root 3721 2026-05-09 14:23 ./usr/bin/scitbx.histogram -rwxr-xr-x root/root 3202 2026-05-09 14:23 ./usr/bin/scitbx.python -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/scitbx.show_build_path -rwxr-xr-x root/root 3745 2026-05-09 14:23 ./usr/bin/scitbx.show_dist_paths -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/scitbx.show_exp_times -rwxr-xr-x root/root 3725 2026-05-09 14:23 ./usr/bin/scitbx.show_sizes -rwxr-xr-x root/root 3749 2026-05-09 14:23 ./usr/bin/scitbx.unicode_examples -rwxr-xr-x root/root 3205 2026-05-09 14:23 ./usr/bin/serialtbx.python -rwxr-xr-x root/root 3748 2026-05-09 14:23 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root/root 3872 2026-05-09 14:23 ./usr/bin/wxtbx.anomalous_differences_histogram -rwxr-xr-x root/root 3828 2026-05-09 14:23 ./usr/bin/wxtbx.inspect_r_free_flags -rwxr-xr-x root/root 3789 2026-05-09 14:23 ./usr/bin/wxtbx.plan_sad_experiment -rwxr-xr-x root/root 3201 2026-05-09 14:23 ./usr/bin/wxtbx.python -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/wxtbx.show_build_path -rwxr-xr-x root/root 3744 2026-05-09 14:23 ./usr/bin/wxtbx.show_dist_paths -rwxr-xr-x root/root 3804 2026-05-09 14:23 ./usr/bin/wxtbx.show_file_info -rwxr-xr-x root/root 3741 2026-05-09 14:23 ./usr/bin/wxtbx.xtriage drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/boost_adaptbx/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/boost_adaptbx/tests/ -rwxr-xr-x root/root 67944 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/boost_adaptbx/tests/tst_optional_copy drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/iotbx/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/iotbx/pdb/ -rwxr-xr-x root/root 133888 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/iotbx/pdb/hybrid_36_fem -rw-r--r-- root/root 118958 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/libtbx_env drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/ -rwxr-xr-x root/root 133712 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors -rwxr-xr-x root/root 199264 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1 -rwxr-xr-x root/root 68160 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2 -rwxr-xr-x root/root 133528 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_3 -rwxr-xr-x root/root 723568 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4 -rwxr-xr-x root/root 133600 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_5 -rwxr-xr-x root/root 68120 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3 -rwxr-xr-x root/root 133712 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_optional_copy -rwxr-xr-x root/root 68104 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_rectangular_full_packed -rwxr-xr-x root/root 68136 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_ref_matrix_facet -rwxr-xr-x root/root 133664 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_sym_mat3 -rwxr-xr-x root/root 68104 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic -rwxr-xr-x root/root 67688 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3 drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/error/ -rwxr-xr-x root/root 68176 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/error/tst_error drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/lbfgs/ -rwxr-xr-x root/root 68192 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/lbfgs/tst_lbfgs drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/math/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/math/tests/ -rwxr-xr-x root/root 68192 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/math/tests/tst drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/matrix/ drwxr-xr-x root/root 0 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/matrix/tests/ -rwxr-xr-x root/root 199328 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_cholesky -rwxr-xr-x root/root 68144 2026-05-09 14:23 ./usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_givens -rwxr-xr-x root/root 199336 2026-05-09 14:23 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-rw-r--r-- root/root 1 2026-03-07 14:36 ./usr/share/lintian/overrides/python3-cctbx +------------------------------------------------------------------------------+ | Post Build Tue, 16 Jun 2026 02:24:11 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Tue, 16 Jun 2026 02:24:11 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Tue, 16 Jun 2026 02:24:27 +0000 | +------------------------------------------------------------------------------+ Build Architecture: loong64 Build Type: any Build-Space: 16571792 Build-Time: 3885 Distribution: unstable Host Architecture: loong64 Install-Time: 15 Job: /srv/rebuilderd/tmp/rebuilderdYD1Gc7/inputs/cctbx_2026.4+ds2+~3.28.0+ds1-2.dsc Machine Architecture: loong64 Package: cctbx Package-Time: 3950 Source-Version: 2026.4+ds2+~3.28.0+ds1-2 Space: 16571792 Status: successful Version: 2026.4+ds2+~3.28.0+ds1-2 -------------------------------------------------------------------------------- Finished at 2026-06-16T02:24:00Z Build needed 01:05:50, 16571792k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdYD1Gc7/out checking libcctbx-dev_2026.4+ds2+~3.28.0+ds1-2_loong64.deb: size... sha256... md5... sha1... all OK checking libcctbx0-dbgsym_2026.4+ds2+~3.28.0+ds1-2_loong64.deb: size... sha1... md5... sha256... all OK checking libcctbx0_2026.4+ds2+~3.28.0+ds1-2_loong64.deb: size... sha256... md5... sha1... all OK checking python3-cctbx-dbgsym_2026.4+ds2+~3.28.0+ds1-2_loong64.deb: size... sha1... md5... sha256... all OK checking python3-cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.deb: size differs for python3-cctbx_2026.4+ds2+~3.28.0+ds1-2_loong64.deb