=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderdvAoQlf/inputs/consensuscore_1.1.1+dfsg-9+b3_loong64.buildinfo Source: consensuscore Version: 1.1.1+dfsg-9 rebuilderd-worker node: loong64-02 +------------------------------------------------------------------------------+ | Downloading sources Sun, 01 Nov 2026 23:34:40 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.7 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [193 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:10 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [248 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [1,396 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [155 kB] Get:15 https://deb.debian.org/debian trixie-backports/main Sources [336 kB] Get:16 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,520 B] Get:17 https://deb.debian.org/debian forky/non-free-firmware Sources [7,984 B] Get:18 https://deb.debian.org/debian forky/main Sources [11.4 MB] Get:19 https://deb.debian.org/debian sid/non-free-firmware Sources [10.7 kB] Get:20 https://deb.debian.org/debian sid/main Sources [12.1 MB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [363 kB] Fetched 36.0 MB in 45s (792 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg-9.dsc' consensuscore_1.1.1+dfsg-9.dsc 2374 SHA256:a0bcbadeeffeec940fb157763b05a2dbba976457217dc53b04f67799f52206bf 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg.orig.tar.xz' consensuscore_1.1.1+dfsg.orig.tar.xz 363936 SHA256:47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 'https://deb.debian.org/debian/pool/main/c/consensuscore/consensuscore_1.1.1%2bdfsg-9.debian.tar.xz' consensuscore_1.1.1+dfsg-9.debian.tar.xz 10340 SHA256:4db0ae878e268792a962af9d1bc855fe16811c67404673045a7ef2dabe5f458e 47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 consensuscore_1.1.1+dfsg.orig.tar.xz 4db0ae878e268792a962af9d1bc855fe16811c67404673045a7ef2dabe5f458e consensuscore_1.1.1+dfsg-9.debian.tar.xz a0bcbadeeffeec940fb157763b05a2dbba976457217dc53b04f67799f52206bf consensuscore_1.1.1+dfsg-9.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Sun, 01 Nov 2026 23:35:27 +0000 | +------------------------------------------------------------------------------+ Rebuilding consensuscore=1.1.1+dfsg-9 in /srv/rebuilderd/tmp/rebuilderdvAoQlf/inputs now. + /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderdvAoQlf/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderdvAoQlf/inputs/consensuscore_1.1.1+dfsg-9+b3_loong64.buildinfo /srv/rebuilderd/tmp/rebuilderdvAoQlf/inputs/consensuscore_1.1.1+dfsg-9+b3_loong64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/consensuscore-1.1.1+dfsg I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://snapshot.debian.org/archive/debian/20261026T022331Z unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 Packages [10.4 MB] Get:4 http://snapshot.debian.org/archive/debian/20261026T022331Z unstable/main loong64 Packages [10.4 MB] Fetched 21.1 MB in 10s (2040 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20261026T022331Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main loong64 libacl1 loong64 2.4.0-1 [37.9 kB] Get:2 http://deb.debian.org/debian unstable/main loong64 architecture-properties loong64 0.2.6+b2 [2640 B] Get:3 http://deb.debian.org/debian unstable/main loong64 libattr1 loong64 1:2.6.0-1 [24.8 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:5 http://deb.debian.org/debian unstable/main loong64 libaudit1 loong64 1:4.1.2-1+b2 [60.4 kB] Get:6 http://deb.debian.org/debian unstable/main loong64 autoconf all 2.73-2 [516 kB] Get:7 http://deb.debian.org/debian unstable/main loong64 automake all 1:1.19-3 [892 kB] Get:8 http://deb.debian.org/debian unstable/main loong64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:9 http://deb.debian.org/debian unstable/main loong64 base-files loong64 14.2 [88.0 kB] Get:10 http://deb.debian.org/debian unstable/main loong64 base-passwd loong64 3.6.8+b1 [54.7 kB] Get:11 http://deb.debian.org/debian unstable/main loong64 bash loong64 5.3-4 [1551 kB] Get:12 http://deb.debian.org/debian unstable/main loong64 binutils loong64 2.47.50.20261021-1 [70.6 kB] Get:13 http://deb.debian.org/debian unstable/main loong64 binutils-common loong64 2.47.50.20261021-1 [2687 kB] Get:14 http://deb.debian.org/debian unstable/main loong64 binutils-loongarch64-linux-gnu loong64 2.47.50.20261021-1 [855 kB] Get:15 http://deb.debian.org/debian unstable/main loong64 libbinutils loong64 2.47.50.20261021-1 [499 kB] Get:16 http://deb.debian.org/debian unstable/main loong64 libctf-nobfd0 loong64 2.47.50.20261021-1 [165 kB] Get:17 http://deb.debian.org/debian unstable/main loong64 libctf0 loong64 2.47.50.20261021-1 [98.2 kB] Get:18 http://deb.debian.org/debian unstable/main loong64 libboost-dev loong64 1.92.0.1 [3260 B] Get:19 http://deb.debian.org/debian unstable/main loong64 libboost-regex1.92-dev loong64 1.92.0-4+b1 [638 kB] Get:20 http://deb.debian.org/debian unstable/main loong64 libboost-regex1.92.0 loong64 1.92.0-4+b1 [314 kB] Get:21 http://deb.debian.org/debian unstable/main loong64 libboost1.92-dev loong64 1.92.0-4+b1 [11.6 MB] Get:22 http://deb.debian.org/debian unstable/main loong64 build-essential loong64 12.12+b1 [4900 B] Get:23 http://deb.debian.org/debian unstable/main loong64 bzip2 loong64 1.0.8-6+b2 [40.3 kB] Get:24 http://deb.debian.org/debian unstable/main loong64 libbz2-1.0 loong64 1.0.8-6+b2 [39.8 kB] Get:25 http://deb.debian.org/debian unstable/main loong64 libdebconfclient0 loong64 0.283 [7648 B] Get:26 http://deb.debian.org/debian unstable/main loong64 dash loong64 0.5.12-12+b1 [101 kB] Get:27 http://deb.debian.org/debian unstable/main loong64 debconf all 1.5.92 [123 kB] Get:28 http://deb.debian.org/debian unstable/main loong64 debhelper all 14.5 [944 kB] Get:29 http://deb.debian.org/debian unstable/main loong64 libdebhelper-perl all 14.5 [77.7 kB] Get:30 http://deb.debian.org/debian unstable/main loong64 debianutils loong64 5.24 [93.1 kB] Get:31 http://deb.debian.org/debian unstable/main loong64 dh-autoreconf all 23 [12.7 kB] Get:32 http://deb.debian.org/debian unstable/main loong64 dh-exec loong64 0.31+b2 [25.7 kB] Get:33 http://deb.debian.org/debian unstable/main loong64 diffutils loong64 1:3.12-1+b1 [405 kB] Get:34 http://deb.debian.org/debian unstable/main loong64 dpkg loong64 1.23.11 [1196 kB] Get:35 http://deb.debian.org/debian unstable/main loong64 dpkg-dev all 1.23.11 [1005 kB] Get:36 http://deb.debian.org/debian unstable/main loong64 libdpkg-perl all 1.23.11 [650 kB] Get:37 http://deb.debian.org/debian unstable/main loong64 dwz loong64 0.17-1 [109 kB] Get:38 http://deb.debian.org/debian unstable/main loong64 libelf1t64 loong64 0.196-1 [61.7 kB] Get:39 http://deb.debian.org/debian unstable/main loong64 libexpat1 loong64 2.9.0-1 [124 kB] Get:40 http://deb.debian.org/debian unstable/main loong64 libexpat1-dev loong64 2.9.0-1 [346 kB] Get:41 http://deb.debian.org/debian unstable/main loong64 file loong64 1:5.47-4 [43.2 kB] Get:42 http://deb.debian.org/debian unstable/main loong64 libmagic-mgc loong64 1:5.47-4 [345 kB] Get:43 http://deb.debian.org/debian unstable/main loong64 libmagic1t64 loong64 1:5.47-4 [112 kB] Get:44 http://deb.debian.org/debian unstable/main loong64 findutils loong64 4.11.0-3 [784 kB] Get:45 http://deb.debian.org/debian unstable/main loong64 cpp-16 loong64 16.2.0-4 [1284 B] Get:46 http://deb.debian.org/debian unstable/main loong64 cpp-16-loongarch64-linux-gnu loong64 16.2.0-4 [10.8 MB] Get:47 http://deb.debian.org/debian unstable/main loong64 g++-16 loong64 16.2.0-4 [36.4 kB] Get:48 http://deb.debian.org/debian unstable/main loong64 g++-16-loongarch64-linux-gnu loong64 16.2.0-4 [12.0 MB] Get:49 http://deb.debian.org/debian unstable/main loong64 gcc-16 loong64 16.2.0-4 [530 kB] Get:50 http://deb.debian.org/debian unstable/main loong64 gcc-16-base loong64 16.2.0-4 [39.3 kB] Get:51 http://deb.debian.org/debian unstable/main loong64 gcc-16-loongarch64-linux-gnu loong64 16.2.0-4 [20.7 MB] Get:52 http://deb.debian.org/debian unstable/main loong64 libasan8 loong64 16.2.0-4 [2833 kB] Get:53 http://deb.debian.org/debian unstable/main loong64 libatomic1 loong64 16.2.0-4 [9240 B] Get:54 http://deb.debian.org/debian unstable/main loong64 libcc1-0 loong64 16.2.0-4 [41.3 kB] Get:55 http://deb.debian.org/debian unstable/main loong64 libgcc-16-dev loong64 16.2.0-4 [4952 kB] Get:56 http://deb.debian.org/debian unstable/main loong64 libgcc-s1 loong64 16.2.0-4 [104 kB] Get:57 http://deb.debian.org/debian unstable/main loong64 libgfortran5 loong64 16.2.0-4 [414 kB] Get:58 http://deb.debian.org/debian unstable/main loong64 libgomp1 loong64 16.2.0-4 [138 kB] Get:59 http://deb.debian.org/debian unstable/main loong64 libitm1 loong64 16.2.0-4 [24.8 kB] Get:60 http://deb.debian.org/debian unstable/main loong64 liblsan0 loong64 16.2.0-4 [1251 kB] Get:61 http://deb.debian.org/debian unstable/main loong64 cpp loong64 4:16.1.0-3 [1580 B] Get:62 http://deb.debian.org/debian unstable/main loong64 cpp-loongarch64-linux-gnu loong64 4:16.1.0-3 [4472 B] Get:63 http://deb.debian.org/debian unstable/main loong64 g++ loong64 4:16.1.0-3 [1336 B] Get:64 http://deb.debian.org/debian unstable/main loong64 g++-loongarch64-linux-gnu loong64 4:16.1.0-3 [1204 B] Get:65 http://deb.debian.org/debian unstable/main loong64 gcc loong64 4:16.1.0-3 [5148 B] Get:66 http://deb.debian.org/debian unstable/main loong64 gcc-loongarch64-linux-gnu loong64 4:16.1.0-3 [1444 B] Get:67 http://deb.debian.org/debian unstable/main loong64 libgdbm-compat4t64 loong64 1.26-1+b2 [52.1 kB] Get:68 http://deb.debian.org/debian unstable/main loong64 libgdbm6t64 loong64 1.26-1+b2 [78.7 kB] Get:69 http://deb.debian.org/debian unstable/main loong64 autopoint all 1.0-5 [820 kB] Get:70 http://deb.debian.org/debian unstable/main loong64 gettext loong64 1.0-5 [2622 kB] Get:71 http://deb.debian.org/debian unstable/main loong64 gettext-base loong64 1.0-5 [331 kB] Get:72 http://deb.debian.org/debian unstable/main loong64 libc-bin loong64 2.43-7 [571 kB] Get:73 http://deb.debian.org/debian unstable/main loong64 libc-dev-bin loong64 2.43-7 [38.8 kB] Get:74 http://deb.debian.org/debian unstable/main loong64 libc-gconv-modules-extra loong64 2.43-7 [1157 kB] Get:75 http://deb.debian.org/debian unstable/main loong64 libc6 loong64 2.43-7 [1357 kB] Get:76 http://deb.debian.org/debian unstable/main loong64 libc6-dev loong64 2.43-7 [2935 kB] Get:77 http://deb.debian.org/debian unstable/main loong64 libgmp10 loong64 2:6.3.0+dfsg-5+b2 [567 kB] Get:78 http://deb.debian.org/debian unstable/main loong64 grep loong64 3.12-1+b1 [445 kB] Get:79 http://deb.debian.org/debian unstable/main loong64 groff-base loong64 1.24.2-2 [1314 kB] Get:80 http://deb.debian.org/debian unstable/main loong64 gzip loong64 1.14-1 [143 kB] Get:81 http://deb.debian.org/debian unstable/main loong64 hostname loong64 3.25+b1 [11.2 kB] Get:82 http://deb.debian.org/debian unstable/main loong64 init-system-helpers all 1.69+nmu3 [37.3 kB] Get:83 http://deb.debian.org/debian unstable/main loong64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:84 http://deb.debian.org/debian unstable/main loong64 libisl23 loong64 0.28-1 [667 kB] Get:85 http://deb.debian.org/debian unstable/main loong64 libjansson4 loong64 2.15.1-1 [66.2 kB] Get:86 http://deb.debian.org/debian unstable/main loong64 libblas3 loong64 3.12.1-8 [114 kB] Get:87 http://deb.debian.org/debian unstable/main loong64 liblapack3 loong64 3.12.1-8 [1876 kB] Get:88 http://deb.debian.org/debian unstable/main loong64 libarchive-zip-perl all 1.68-1 [104 kB] Get:89 http://deb.debian.org/debian unstable/main loong64 libcap-ng0 loong64 0.9.6-1+b1 [19.3 kB] Get:90 http://deb.debian.org/debian unstable/main loong64 libffi8 loong64 3.8.0-2 [26.3 kB] Get:91 http://deb.debian.org/debian unstable/main loong64 libcrypt1 loong64 1:4.5.2+20251210-1 [94.8 kB] Get:92 http://deb.debian.org/debian unstable/main loong64 libjs-sphinxdoc all 9.2.0-1 [46.8 kB] Get:93 http://deb.debian.org/debian unstable/main loong64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:94 http://deb.debian.org/debian unstable/main loong64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:95 http://deb.debian.org/debian unstable/main loong64 bsdextrautils loong64 2.42.4-1 [103 kB] Get:96 http://deb.debian.org/debian unstable/main loong64 libblkid1 loong64 2.42.4-1 [179 kB] Get:97 http://deb.debian.org/debian unstable/main loong64 liblzma5 loong64 5.8.4-1 [341 kB] Get:98 http://snapshot.debian.org/archive/debian/20261026T022331Z unstable/main loong64 coreutils loong64 9.10-1 [3128 kB] Get:99 http://snapshot.debian.org/archive/debian/20261026T022331Z unstable/main loong64 libdb5.3t64 loong64 5.3.28+dfsg2-11+b1 [711 kB] Get:100 http://snapshot.debian.org/archive/debian/20261026T022331Z unstable/main loong64 dh-python all 7.20261025 [115 kB] Fetched 101 MB in 1s (106 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/gzip_1.14-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libc6-dev_2.43-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/init-system-helpers_1.69+nmu3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libatomic1_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libarchive-zip-perl_1.68-1_all.deb' dpkg-name: info: moved 'cpp_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/cpp_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/gettext-base_1.0-5_loong64.deb' dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/libaudit-common_4.1.2-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/dpkg_1.23.11_loong64.deb' dpkg-name: info: moved 'g++_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/g++_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/dash_0.5.12-12+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/g++-16-loongarch64-linux-gnu_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libgcc-16-dev_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/gcc-16-loongarch64-linux-gnu_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/gettext_1.0-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libjansson4_2.15.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libbinutils_2.47.50.20261021-1_loong64.deb' dpkg-name: info: moved 'libattr1_1%3a2.6.0-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/libattr1_2.6.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/autopoint_1.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libctf0_2.47.50.20261021-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/architecture-properties_0.2.6+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libjs-sphinxdoc_9.2.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/bsdextrautils_2.42.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libelf1t64_0.196-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/gcc-16-base_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/liblapack3_3.12.1-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libgfortran5_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libc6_2.43-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libdb5.3t64_5.3.28+dfsg2-11+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libdebconfclient0_0.283_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libc-gconv-modules-extra_2.43-7_loong64.deb' dpkg-name: info: moved 'libmagic-mgc_1%3a5.47-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/libmagic-mgc_5.47-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libboost-dev_1.92.0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libblkid1_2.42.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/dh-autoreconf_23_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/cpp-16-loongarch64-linux-gnu_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libctf-nobfd0_2.47.50.20261021-1_loong64.deb' dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/libaudit1_4.1.2-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libdpkg-perl_1.23.11_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/dh-python_7.20261025_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/base-passwd_3.6.8+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libc-bin_2.43-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/bzip2_1.0.8-6+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libdebhelper-perl_14.5_all.deb' dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/libgmp10_6.3.0+dfsg-5+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/bash_5.3-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/groff-base_1.24.2-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/dh-exec_0.31+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libgdbm6t64_1.26-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/cpp-16_16.2.0-4_loong64.deb' dpkg-name: info: moved 'libcrypt1_1%3a4.5.2+20251210-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/libcrypt1_4.5.2+20251210-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/binutils-loongarch64-linux-gnu_2.47.50.20261021-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/dpkg-dev_1.23.11_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/debconf_1.5.92_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libisl23_0.28-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/base-files_14.2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libcc1-0_16.2.0-4_loong64.deb' dpkg-name: info: moved 'gcc_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/gcc_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libacl1_2.4.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/g++-16_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/liblsan0_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libboost-regex1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/debianutils_5.24_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libffi8_3.8.0-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libitm1_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libasan8_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/intltool-debian_0.35.0+20060710.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libexpat1_2.9.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libgcc-s1_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/hostname_3.25+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libexpat1-dev_2.9.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/autotools-dev_20240727.1+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libbz2-1.0_1.0.8-6+b2_loong64.deb' dpkg-name: info: moved 'automake_1%3a1.19-3_all.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/automake_1.19-3_all.deb' dpkg-name: info: moved 'diffutils_1%3a3.12-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/diffutils_3.12-1+b1_loong64.deb' dpkg-name: info: moved 'libmagic1t64_1%3a5.47-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/libmagic1t64_5.47-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libgdbm-compat4t64_1.26-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libc-dev-bin_2.43-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/autoconf_2.73-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/dwz_0.17-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libblas3_3.12.1-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/build-essential_12.12+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/coreutils_9.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/liblzma5_5.8.4-1_loong64.deb' dpkg-name: info: moved 'g++-loongarch64-linux-gnu_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/g++-loongarch64-linux-gnu_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libgomp1_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/dh-strip-nondeterminism_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libcap-ng0_0.9.6-1+b1_loong64.deb' dpkg-name: info: moved 'cpp-loongarch64-linux-gnu_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/cpp-loongarch64-linux-gnu_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libboost-regex1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/binutils-common_2.47.50.20261021-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libfile-stripnondeterminism-perl_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/libboost1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/binutils_2.47.50.20261021-1_loong64.deb' dpkg-name: info: moved 'gcc-loongarch64-linux-gnu_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/gcc-loongarch64-linux-gnu_16.1.0-3_loong64.deb' dpkg-name: info: moved 'file_1%3a5.47-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpxf_lm4nz/file_5.47-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/findutils_4.11.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/debhelper_14.5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/gcc-16_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpxf_lm4nz/grep_3.12-1+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsframe3 loong64 2.47.50.20261021-1 [86.1 kB] Get:2 http://deb.debian.org/debian unstable/main loong64 libstdc++-16-dev loong64 16.2.0-4 [5779 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 libstdc++6 loong64 16.2.0-4 [750 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 libtsan2 loong64 16.2.0-4 [2507 kB] Get:5 http://deb.debian.org/debian unstable/main loong64 libubsan1 loong64 16.2.0-4 [1115 kB] Get:6 http://deb.debian.org/debian unstable/main loong64 libmd0 loong64 1.3.0-1 [40.8 kB] Get:7 http://deb.debian.org/debian unstable/main loong64 libpipeline1 loong64 1.5.8-3 [48.6 kB] Get:8 http://deb.debian.org/debian unstable/main loong64 libselinux1 loong64 3.11-2.1+b1 [87.0 kB] Get:9 http://deb.debian.org/debian unstable/main loong64 libtool all 2.6.2-3 [552 kB] Get:10 http://deb.debian.org/debian unstable/main loong64 libunistring5 loong64 1.4.2-1 [483 kB] Get:11 http://deb.debian.org/debian unstable/main loong64 libxml2-16 loong64 2.15.4+dfsg-1+b1 [654 kB] Get:12 http://deb.debian.org/debian unstable/main loong64 libzstd1 loong64 1.5.7+dfsg-4 [285 kB] Get:13 http://deb.debian.org/debian unstable/main loong64 m4 loong64 1.4.21-1 [332 kB] Get:14 http://deb.debian.org/debian unstable/main loong64 make loong64 4.4.1-3+b1 [462 kB] Get:15 http://deb.debian.org/debian unstable/main loong64 man-db loong64 2.13.1-1+b1 [1460 kB] Get:16 http://deb.debian.org/debian unstable/main loong64 mawk loong64 1.3.4.20260302-2 [141 kB] Get:17 http://deb.debian.org/debian unstable/main loong64 media-types all 14.0.0 [30.8 kB] Get:18 http://deb.debian.org/debian unstable/main loong64 libmpc3 loong64 1.3.1-3 [56.2 kB] Get:19 http://deb.debian.org/debian unstable/main loong64 libmpfr6 loong64 4.2.2-3 [664 kB] Get:20 http://deb.debian.org/debian unstable/main loong64 libncursesw6 loong64 6.6+20260608-2 [137 kB] Get:21 http://deb.debian.org/debian unstable/main loong64 libtinfo6 loong64 6.6+20260608-2 [352 kB] Get:22 http://deb.debian.org/debian unstable/main loong64 ncurses-base all 6.6+20260608-2 [276 kB] Get:23 http://deb.debian.org/debian unstable/main loong64 ncurses-bin loong64 6.6+20260608-2 [442 kB] Get:24 http://deb.debian.org/debian unstable/main loong64 netbase all 6.6 [10.3 kB] Get:25 http://deb.debian.org/debian unstable/main loong64 python3-numpy loong64 1:2.4.6+ds-5+b1 [3920 kB] Get:26 http://deb.debian.org/debian unstable/main loong64 python3-numpy-dev loong64 1:2.4.6+ds-5+b1 [174 kB] Get:27 http://deb.debian.org/debian unstable/main loong64 libssl3t64 loong64 3.6.5-1 [2156 kB] Get:28 http://deb.debian.org/debian unstable/main loong64 openssl-provider-legacy loong64 3.6.5-1 [325 kB] Get:29 http://deb.debian.org/debian unstable/main loong64 libpam-modules loong64 1.7.0-8 [168 kB] Get:30 http://deb.debian.org/debian unstable/main loong64 libpam-modules-bin loong64 1.7.0-8 [46.6 kB] Get:31 http://deb.debian.org/debian unstable/main loong64 libpam-runtime all 1.7.0-8 [246 kB] Get:32 http://deb.debian.org/debian unstable/main loong64 libpam0g loong64 1.7.0-8 [67.6 kB] Get:33 http://deb.debian.org/debian unstable/main loong64 patch loong64 2.8.1-1 [133 kB] Get:34 http://deb.debian.org/debian unstable/main loong64 libperl5.42 loong64 5.42.3-1 [4194 kB] Get:35 http://deb.debian.org/debian unstable/main loong64 perl loong64 5.42.3-1 [266 kB] Get:36 http://deb.debian.org/debian unstable/main loong64 perl-base loong64 5.42.3-1 [1821 kB] Get:37 http://deb.debian.org/debian unstable/main loong64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:38 http://deb.debian.org/debian unstable/main loong64 po-debconf all 1.0.22 [216 kB] Get:39 http://deb.debian.org/debian unstable/main loong64 libpython3-all-dev loong64 3.14.8-1 [1020 B] Get:40 http://deb.debian.org/debian unstable/main loong64 libpython3-dev loong64 3.14.8-1 [8752 B] Get:41 http://deb.debian.org/debian unstable/main loong64 libpython3-stdlib loong64 3.14.8-1 [8520 B] Get:42 http://deb.debian.org/debian unstable/main loong64 python3 loong64 3.14.8-1 [26.3 kB] Get:43 http://deb.debian.org/debian unstable/main loong64 python3-all loong64 3.14.8-1 [996 B] Get:44 http://deb.debian.org/debian unstable/main loong64 python3-all-dev loong64 3.14.8-1 [1028 B] Get:45 http://deb.debian.org/debian unstable/main loong64 python3-dev loong64 3.14.8-1 [26.7 kB] Get:46 http://deb.debian.org/debian unstable/main loong64 python3-minimal loong64 3.14.8-1 [25.8 kB] Get:47 http://deb.debian.org/debian unstable/main loong64 libpython3.14 loong64 3.14.10-1 [2368 kB] Get:48 http://deb.debian.org/debian unstable/main loong64 libpython3.14-dev loong64 3.14.10-1 [15.9 MB] Get:49 http://deb.debian.org/debian unstable/main loong64 libpython3.14-minimal loong64 3.14.10-1 [903 kB] Get:50 http://deb.debian.org/debian unstable/main loong64 libpython3.14-stdlib loong64 3.14.10-1 [2316 kB] Get:51 http://deb.debian.org/debian unstable/main loong64 python3.14 loong64 3.14.10-1 [884 kB] Get:52 http://deb.debian.org/debian unstable/main loong64 python3.14-dev loong64 3.14.10-1 [510 kB] Get:53 http://deb.debian.org/debian unstable/main loong64 python3.14-minimal loong64 3.14.10-1 [2381 kB] Get:54 http://deb.debian.org/debian unstable/main loong64 libpython3.15 loong64 3.15.2-1 [2492 kB] Get:55 http://deb.debian.org/debian unstable/main loong64 libpython3.15-dev loong64 3.15.2-1 [16.8 MB] Get:56 http://deb.debian.org/debian unstable/main loong64 libpython3.15-minimal loong64 3.15.2-1 [928 kB] Get:57 http://deb.debian.org/debian unstable/main loong64 libpython3.15-stdlib loong64 3.15.2-1 [3032 kB] Get:58 http://deb.debian.org/debian unstable/main loong64 python3.15 loong64 3.15.2-1 [945 kB] Get:59 http://deb.debian.org/debian unstable/main loong64 python3.15-dev loong64 3.15.2-1 [512 kB] Get:60 http://deb.debian.org/debian unstable/main loong64 python3.15-minimal loong64 3.15.2-1 [2501 kB] Get:61 http://deb.debian.org/debian unstable/main loong64 libreadline8t64 loong64 8.3-4 [181 kB] Get:62 http://deb.debian.org/debian unstable/main loong64 readline-common all 8.3-4 [74.8 kB] Get:63 http://deb.debian.org/debian unstable/main loong64 sed loong64 4.9-3 [330 kB] Get:64 http://deb.debian.org/debian unstable/main loong64 sensible-utils all 0.0.26 [27.0 kB] Get:65 http://deb.debian.org/debian unstable/main loong64 python3-setuptools all 84.2.0-1 [602 kB] Get:66 http://deb.debian.org/debian unstable/main loong64 libsimde-dev all 0.8.4~rc3-5 [500 kB] Get:67 http://deb.debian.org/debian unstable/main loong64 libsqlite3-0 loong64 3.53.4-2 [950 kB] Get:68 http://deb.debian.org/debian unstable/main loong64 swig loong64 4.5.1-2 [1493 kB] Get:69 http://deb.debian.org/debian unstable/main loong64 libsystemd0 loong64 262.1-1 [465 kB] Get:70 http://deb.debian.org/debian unstable/main loong64 libudev1 loong64 262.1-1 [138 kB] Get:71 http://deb.debian.org/debian unstable/main loong64 sysvinit-utils loong64 3.18-1 [29.9 kB] Get:72 http://deb.debian.org/debian unstable/main loong64 libuchardet0 loong64 0.0.8-2+b2 [69.9 kB] Get:73 http://deb.debian.org/debian unstable/main loong64 libmount1 loong64 2.42.4-1 [220 kB] Get:74 http://deb.debian.org/debian unstable/main loong64 libsmartcols1 loong64 2.42.4-1 [149 kB] Get:75 http://deb.debian.org/debian unstable/main loong64 libuuid1 loong64 2.42.4-1 [33.1 kB] Get:76 http://deb.debian.org/debian unstable/main loong64 util-linux loong64 2.42.4-1 [1210 kB] Get:77 http://deb.debian.org/debian unstable/main loong64 xz-utils loong64 5.8.4-1 [760 kB] Get:78 http://deb.debian.org/debian unstable/main loong64 zlib1g loong64 1:1.3.dfsg+really1.3.2-4 [88.2 kB] Get:79 http://deb.debian.org/debian unstable/main loong64 zlib1g-dev loong64 1:1.3.dfsg+really1.3.2-4 [973 kB] Get:80 http://snapshot.debian.org/archive/debian/20261026T022331Z unstable/main loong64 linux-libc-dev all 7.2.12-1 [2029 kB] Get:81 http://snapshot.debian.org/archive/debian/20261026T022331Z unstable/main loong64 libpcre2-8-0 loong64 10.48-3.1 [299 kB] Get:82 http://snapshot.debian.org/archive/debian/20261026T022331Z unstable/main loong64 tar loong64 1.35+dfsg-6 [818 kB] Get:83 http://snapshot.debian.org/archive/debian/20261026T022331Z unstable/main loong64 tzdata all 2026e-1 [262 kB] Fetched 98.0 MB in 1s (109 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libuuid1_2.42.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpython3.14-stdlib_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libmount1_2.42.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpython3.14-dev_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libselinux1_3.11-2.1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpython3.15-stdlib_3.15.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/python3.14-dev_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libstdc++-16-dev_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/python3.14-minimal_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/make_4.4.1-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/tar_1.35+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/sed_4.9-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/python3.14_3.14.10-1_loong64.deb' dpkg-name: info: moved 'python3-numpy_1%3a2.4.6+ds-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmppg6zxuff/python3-numpy_2.4.6+ds-5+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/sysvinit-utils_3.18-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/python3_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/perl-base_5.42.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/perl_5.42.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/python3-setuptools_84.2.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/media-types_14.0.0_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/python3.15-dev_3.15.2-1_loong64.deb' dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-4_loong64.deb' to '/srv/rebuilderd/tmp/tmppg6zxuff/zlib1g-dev_1.3.dfsg+really1.3.2-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libmd0_1.3.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libtinfo6_6.6+20260608-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libmpfr6_4.2.2-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libreadline8t64_8.3-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libssl3t64_3.6.5-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpam-modules_1.7.0-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/openssl-provider-legacy_3.6.5-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libsystemd0_262.1-1_loong64.deb' dpkg-name: info: moved 'python3-numpy-dev_1%3a2.4.6+ds-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmppg6zxuff/python3-numpy-dev_2.4.6+ds-5+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libsimde-dev_0.8.4~rc3-5_all.deb' 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'/srv/rebuilderd/tmp/tmppg6zxuff/libxml2-16_2.15.4+dfsg-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libuchardet0_0.0.8-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/po-debconf_1.0.22_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libtool_2.6.2-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpython3-dev_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpcre2-8-0_10.48-3.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libunistring5_1.4.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/python3-minimal_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpipeline1_1.5.8-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpython3.14-minimal_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/ncurses-bin_6.6+20260608-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpython3.14_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpython3.15-dev_3.15.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/xz-utils_5.8.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/python3-all-dev_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/python3-dev_3.14.8-1_loong64.deb' dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-4_loong64.deb' to '/srv/rebuilderd/tmp/tmppg6zxuff/zlib1g_1.3.dfsg+really1.3.2-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libubsan1_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libncursesw6_6.6+20260608-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libpam-runtime_1.7.0-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmppg6zxuff/libsmartcols1_2.42.4-1_loong64.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture loong64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_loong64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_loong64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpcg8qus6i/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture loong64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.weKRxyK1T6 as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.weKRxyK1T6 127.0.0.1 - - [01/Nov/2026 18:36:02] code 404, message File not found 127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39919 ./ InRelease 127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:39919 ./ Release [462 B] 127.0.0.1 - - [01/Nov/2026 18:36:02] code 404, message File not found 127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39919 ./ Release.gpg 127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:39919 ./ Packages [225 kB] Fetched 225 kB in 0s (8744 kB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - 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127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./libblkid1_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./libmount1_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./libsmartcols1_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./libudev1_262.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./libuuid1_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:02] "GET /./util-linux_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:03] "GET /./libdebconfclient0_0.283_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:03] "GET /./base-passwd_3.6.8%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:03] "GET /./init-system-helpers_1.69%2bnmu3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:03] "GET /./libc-bin_2.43-7_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:03] "GET /./ncurses-base_6.6%2b20260608-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:03] "GET /./sysvinit-utils_3.18-1_loong64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.weKRxyK1T6 127.0.0.1 - - [01/Nov/2026 18:36:05] code 404, message File not found 127.0.0.1 - - [01/Nov/2026 18:36:05] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:39919 ./ InRelease 127.0.0.1 - - [01/Nov/2026 18:36:05] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:39919 ./ Release 127.0.0.1 - - [01/Nov/2026 18:36:05] code 404, message File not found 127.0.0.1 - - [01/Nov/2026 18:36:05] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:39919 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.weKRxyK1T6 usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [01/Nov/2026 18:36:12] "GET /./libexpat1_2.9.0-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:12] "GET /./libpython3.14-minimal_3.14.10-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:12] "GET /./python3.14-minimal_3.14.10-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:12] "GET /./python3-minimal_3.14.8-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:12] "GET /./media-types_14.0.0_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:12] "GET /./netbase_6.6_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:12] "GET /./tzdata_2026e-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [01/Nov/2026 18:36:12] "GET /./libffi8_3.8.0-2_loong64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [01/Nov/2026 18:36:14] "GET /./debootsnap-dummy_1.0_all.deb HTTP/1.1" 200 - I: running --customize-hook directly: /srv/rebuilderd/tmp/tmpcg8qus6i/apt_install.sh /srv/rebuilderd/tmp/mmdebstrap.weKRxyK1T6 Reading package lists... Building dependency tree... Reading state information... gzip is already the newest version (1.14-1). libc6-dev is already the newest version (2.43-7). libc6-dev set to manually installed. init-system-helpers is already the newest version (1.69+nmu3). libatomic1 is already the newest version (16.2.0-4). libatomic1 set to manually installed. libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. gettext-base is already the newest version (1.0-5). gettext-base set to manually installed. libaudit-common is already the newest version (1:4.1.2-1). libgmp10 is already the newest version (2:6.3.0+dfsg-5+b2). dpkg is already the newest version (1.23.11). dash is already the newest version (0.5.12-12+b1). g++-16-loongarch64-linux-gnu is already the newest version (16.2.0-4). g++-16-loongarch64-linux-gnu set to manually installed. libgcc-16-dev is already the newest version (16.2.0-4). libgcc-16-dev set to manually installed. gcc-16-loongarch64-linux-gnu is already the newest version (16.2.0-4). gcc-16-loongarch64-linux-gnu set to manually installed. gettext is already the newest version (1.0-5). gettext set to manually installed. libmagic1t64 is already the newest version (1:5.47-4). libmagic1t64 set to manually installed. libattr1 is already the newest version (1:2.6.0-1). libjansson4 is already the newest version (2.15.1-1). libjansson4 set to manually installed. g++ is already the newest version (4:16.1.0-3). g++ set to manually installed. libbinutils is already the newest version (2.47.50.20261021-1). libbinutils set to manually installed. autopoint is already the newest version (1.0-5). autopoint set to manually installed. libctf0 is already the newest version (2.47.50.20261021-1). libctf0 set to manually installed. cpp-loongarch64-linux-gnu is already the newest version (4:16.1.0-3). cpp-loongarch64-linux-gnu set to manually installed. architecture-properties is already the newest version (0.2.6+b2). architecture-properties set to manually installed. libjs-sphinxdoc is already the newest version (9.2.0-1). libjs-sphinxdoc set to manually installed. bsdextrautils is already the newest version (2.42.4-1). bsdextrautils set to manually installed. libelf1t64 is already the newest version (0.196-1). libelf1t64 set to manually installed. gcc-16-base is already the newest version (16.2.0-4). liblapack3 is already the newest version (3.12.1-8). liblapack3 set to manually installed. libgfortran5 is already the newest version (16.2.0-4). libgfortran5 set to manually installed. libc6 is already the newest version (2.43-7). libdb5.3t64 is already the newest version (5.3.28+dfsg2-11+b1). automake is already the newest version (1:1.19-3). automake set to manually installed. libdebconfclient0 is already the newest version (0.283). libc-gconv-modules-extra is already the newest version (2.43-7). file is already the newest version (1:5.47-4). file set to manually installed. libboost-dev is already the newest version (1.92.0.1). libboost-dev set to manually installed. libaudit1 is already the newest version (1:4.1.2-1+b2). libblkid1 is already the newest version (2.42.4-1). dh-autoreconf is already the newest version (23). dh-autoreconf set to manually installed. cpp-16-loongarch64-linux-gnu is already the newest version (16.2.0-4). cpp-16-loongarch64-linux-gnu set to manually installed. libctf-nobfd0 is already the newest version (2.47.50.20261021-1). libctf-nobfd0 set to manually installed. libdpkg-perl is already the newest version (1.23.11). libdpkg-perl set to manually installed. dh-python is already the newest version (7.20261025). dh-python set to manually installed. base-passwd is already the newest version (3.6.8+b1). libc-bin is already the newest version (2.43-7). bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. libdebhelper-perl is already the newest version (14.5). libdebhelper-perl set to manually installed. bash is already the newest version (5.3-4). groff-base is already the newest version (1.24.2-2). groff-base set to manually installed. dh-exec is already the newest version (0.31+b2). dh-exec set to manually installed. libgdbm6t64 is already the newest version (1.26-1+b2). libgdbm6t64 set to manually installed. cpp-16 is already the newest version (16.2.0-4). cpp-16 set to manually installed. binutils-loongarch64-linux-gnu is already the newest version (2.47.50.20261021-1). binutils-loongarch64-linux-gnu set to manually installed. dpkg-dev is already the newest version (1.23.11). dpkg-dev set to manually installed. debconf is already the newest version (1.5.92). libcrypt1 is already the newest version (1:4.5.2+20251210-1). libisl23 is already the newest version (0.28-1). libisl23 set to manually installed. base-files is already the newest version (14.2). libcc1-0 is already the newest version (16.2.0-4). libcc1-0 set to manually installed. libacl1 is already the newest version (2.4.0-1). g++-16 is already the newest version (16.2.0-4). g++-16 set to manually installed. liblsan0 is already the newest version (16.2.0-4). liblsan0 set to manually installed. libboost-regex1.92-dev is already the newest version (1.92.0-4+b1). libboost-regex1.92-dev set to manually installed. debianutils is already the newest version (5.24). libffi8 is already the newest version (3.8.0-2). libffi8 set to manually installed. libitm1 is already the newest version (16.2.0-4). libitm1 set to manually installed. g++-loongarch64-linux-gnu is already the newest version (4:16.1.0-3). g++-loongarch64-linux-gnu set to manually installed. cpp is already the newest version (4:16.1.0-3). cpp set to manually installed. libasan8 is already the newest version (16.2.0-4). libasan8 set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. gcc-loongarch64-linux-gnu is already the newest version (4:16.1.0-3). gcc-loongarch64-linux-gnu set to manually installed. libexpat1 is already the newest version (2.9.0-1). libexpat1 set to manually installed. libgcc-s1 is already the newest version (16.2.0-4). hostname is already the newest version (3.25+b1). libexpat1-dev is already the newest version (2.9.0-1). libexpat1-dev set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. libbz2-1.0 is already the newest version (1.0.8-6+b2). libgdbm-compat4t64 is already the newest version (1.26-1+b2). libgdbm-compat4t64 set to manually installed. libc-dev-bin is already the newest version (2.43-7). libc-dev-bin set to manually installed. autoconf is already the newest version (2.73-2). autoconf set to manually installed. libmagic-mgc is already the newest version (1:5.47-4). libmagic-mgc set to manually installed. dwz is already the newest version (0.17-1). dwz set to manually installed. libblas3 is already the newest version (3.12.1-8). libblas3 set to manually installed. build-essential is already the newest version (12.12+b1). build-essential set to manually installed. coreutils is already the newest version (9.10-1). liblzma5 is already the newest version (5.8.4-1). libgomp1 is already the newest version (16.2.0-4). libgomp1 set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.1-1). dh-strip-nondeterminism set to manually installed. libcap-ng0 is already the newest version (0.9.6-1+b1). libboost-regex1.92.0 is already the newest version (1.92.0-4+b1). libboost-regex1.92.0 set to manually installed. gcc is already the newest version (4:16.1.0-3). gcc set to manually installed. binutils-common is already the newest version (2.47.50.20261021-1). binutils-common set to manually installed. libfile-stripnondeterminism-perl is already the newest version (1.15.1-1). libfile-stripnondeterminism-perl set to manually installed. libboost1.92-dev is already the newest version (1.92.0-4+b1). libboost1.92-dev set to manually installed. binutils is already the newest version (2.47.50.20261021-1). binutils set to manually installed. diffutils is already the newest version (1:3.12-1+b1). findutils is already the newest version (4.11.0-3). debhelper is already the newest version (14.5). debhelper set to manually installed. gcc-16 is already the newest version (16.2.0-4). gcc-16 set to manually installed. grep is already the newest version (3.12-1+b1). libuuid1 is already the newest version (2.42.4-1). libpython3.14-stdlib is already the newest version (3.14.10-1). libpython3.14-stdlib set to manually installed. libmount1 is already the newest version (2.42.4-1). libpython3.14-dev is already the newest version (3.14.10-1). libpython3.14-dev set to manually installed. libselinux1 is already the newest version (3.11-2.1+b1). zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-4). libpython3.15-stdlib is already the newest version (3.15.2-1). libpython3.15-stdlib set to manually installed. python3.14-dev is already the newest version (3.14.10-1). python3.14-dev set to manually installed. libstdc++-16-dev is already the newest version (16.2.0-4). libstdc++-16-dev set to manually installed. python3.14-minimal is already the newest version (3.14.10-1). python3.14-minimal set to manually installed. make is already the newest version (4.4.1-3+b1). make set to manually installed. tar is already the newest version (1.35+dfsg-6). sed is already the newest version (4.9-3). python3.14 is already the newest version (3.14.10-1). python3.14 set to manually installed. sysvinit-utils is already the newest version (3.18-1). python3 is already the newest version (3.14.8-1). python3 set to manually installed. perl-base is already the newest version (5.42.3-1). perl is already the newest version (5.42.3-1). perl set to manually installed. python3-setuptools is already the newest version (84.2.0-1). python3-setuptools set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. python3.15-dev is already the newest version (3.15.2-1). python3.15-dev set to manually installed. libmd0 is already the newest version (1.3.0-1). libtinfo6 is already the newest version (6.6+20260608-2). libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libssl3t64 is already the newest version (3.6.5-1). libpam-modules is already the newest version (1.7.0-8). openssl-provider-legacy is already the newest version (3.6.5-1). libsystemd0 is already the newest version (262.1-1). libsimde-dev is already the newest version (0.8.4~rc3-5). libsimde-dev set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. libpython3-stdlib is already the newest version (3.14.8-1). libpython3-stdlib set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-4). libpam0g is already the newest version (1.7.0-8). python3.15-minimal is already the newest version (3.15.2-1). python3.15-minimal set to manually installed. libsqlite3-0 is already the newest version (3.53.4-2). libsqlite3-0 set to manually installed. netbase is already the newest version (6.6). netbase set to manually installed. linux-libc-dev is already the newest version (7.2.12-1). linux-libc-dev set to manually installed. libsframe3 is already the newest version (2.47.50.20261021-1). libsframe3 set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. libpython3.15-minimal is already the newest version (3.15.2-1). libpython3.15-minimal set to manually installed. util-linux is already the newest version (2.42.4-1). libpython3.15 is already the newest version (3.15.2-1). libpython3.15 set to manually installed. patch is already the newest version (2.8.1-1). patch set to manually installed. python3-all is already the newest version (3.14.8-1). python3-all set to manually installed. libstdc++6 is already the newest version (16.2.0-4). libstdc++6 set to manually installed. perl-modules-5.42 is already the newest version (5.42.3-1). perl-modules-5.42 set to manually installed. python3.15 is already the newest version (3.15.2-1). python3.15 set to manually installed. man-db is already the newest version (2.13.1-1+b1). man-db set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. ncurses-base is already the newest version (6.6+20260608-2). libperl5.42 is already the newest version (5.42.3-1). libperl5.42 set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. swig is already the newest version (4.5.1-2). swig set to manually installed. tzdata is already the newest version (2026e-1). tzdata set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-4). zlib1g-dev set to manually installed. libtsan2 is already the newest version (16.2.0-4). libtsan2 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-8). libudev1 is already the newest version (262.1-1). mawk is already the newest version (1.3.4.20260302-2). python3-numpy is already the newest version (1:2.4.6+ds-5+b1). python3-numpy set to manually installed. libpython3-all-dev is already the newest version (3.14.8-1). libpython3-all-dev set to manually installed. libxml2-16 is already the newest version (2.15.4+dfsg-1+b1). libxml2-16 set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. libtool is already the newest version (2.6.2-3). libtool set to manually installed. libpython3-dev is already the newest version (3.14.8-1). libpython3-dev set to manually installed. libpcre2-8-0 is already the newest version (10.48-3.1). libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. python3-minimal is already the newest version (3.14.8-1). python3-minimal set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. libpython3.14-minimal is already the newest version (3.14.10-1). libpython3.14-minimal set to manually installed. python3-numpy-dev is already the newest version (1:2.4.6+ds-5+b1). python3-numpy-dev set to manually installed. ncurses-bin is already the newest version (6.6+20260608-2). libpython3.14 is already the newest version (3.14.10-1). libpython3.14 set to manually installed. libpython3.15-dev is already the newest version (3.15.2-1). libpython3.15-dev set to manually installed. xz-utils is already the newest version (5.8.4-1). xz-utils set to manually installed. python3-all-dev is already the newest version (3.14.8-1). python3-all-dev set to manually installed. python3-dev is already the newest version (3.14.8-1). python3-dev set to manually installed. libubsan1 is already the newest version (16.2.0-4). libubsan1 set to manually installed. libncursesw6 is already the newest version (6.6+20260608-2). libncursesw6 set to manually installed. libpam-runtime is already the newest version (1.7.0-8). libsmartcols1 is already the newest version (2.42.4-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.weKRxyK1T6 (Reading database ... 37329 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.weKRxyK1T6 I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.weKRxyK1T6 I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.weKRxyK1T6... I: success in 72.0907 seconds Downloading packages 1 to 100 out of 183 Downloading packages 101 to 183 out of 183 env --chdir=/srv/rebuilderd/tmp/rebuilderdvAoQlf/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1767942233 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuildkZqtTz/debrebuild.sbuildrc.AfBTotcq3KRX sbuild --build=loong64 --host=loong64 --arch-any --no-arch-all --binNMU-changelog= consensuscore (1.1.1+dfsg-9+b3) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for loong64; no source changes. * Rebuild with Python 3.15 as supported version -- loong64 Build Daemon (loongson-conova-02) Fri, 09 Jan 2026 07:03:53 +0000 --chroot=/srv/rebuilderd/tmp/debrebuildkZqtTz/debrebuild.tar.LqsbxKZ2B4ZM --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=consensuscore-1.1.1+dfsg /srv/rebuilderd/tmp/rebuilderdvAoQlf/inputs/consensuscore_1.1.1+dfsg-9.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.91.10 (27 June 2026) on loong64-02 +==============================================================================+ | consensuscore 1.1.1+dfsg-9+b3 (loong64) Sun, 01 Nov 2026 23:37:15 +0000 | +==============================================================================+ Package: consensuscore Version: 1.1.1+dfsg-9+b3 Source Version: 1.1.1+dfsg-9 Distribution: unstable Machine Architecture: loong64 Host Architecture: loong64 Build Architecture: loong64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuildkZqtTz/debrebuild.tar.LqsbxKZ2B4ZM to /srv/rebuilderd/tmp/tmp.sbuild.O_Hxr_am8a... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Sun, 01 Nov 2026 23:37:25 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderdvAoQlf/inputs/consensuscore_1.1.1+dfsg-9.dsc exists in /srv/rebuilderd/tmp/rebuilderdvAoQlf/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Sun, 01 Nov 2026 23:37:27 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, architecture-is-64-bit, architecture-is-little-endian, libboost-dev, libsimde-dev, python3-all-dev, python3-numpy, python3-numpy-dev, python3-setuptools, swig, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, architecture-is-64-bit, architecture-is-little-endian, libboost-dev, libsimde-dev, python3-all-dev, python3-numpy, python3-numpy-dev, python3-setuptools, swig, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-ukhlUX/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Sun, 01 Nov 2026 23:37:33 +0000 | +------------------------------------------------------------------------------+ Arch check ok (loong64 included in any) +------------------------------------------------------------------------------+ | Build environment Sun, 01 Nov 2026 23:37:34 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.2.9+deb14-loong64 #1 SMP PREEMPT Debian 7.2.9-1 (2026-10-03) loong64 (loongarch64) Toolchain package versions: binutils_2.47.50.20261021-1 dpkg-dev_1.23.11 g++-16_16.2.0-4 gcc-16_16.2.0-4 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-4 libstdc++6_16.2.0-4 linux-libc-dev_7.2.12-1 Package versions: architecture-properties_0.2.6+b2 autoconf_2.73-2 automake_1:1.19-3 autopoint_1.0-5 autotools-dev_20240727.1+nmu1 base-files_14.2 base-passwd_3.6.8+b1 bash_5.3-4 binutils_2.47.50.20261021-1 binutils-common_2.47.50.20261021-1 binutils-loongarch64-linux-gnu_2.47.50.20261021-1 bsdextrautils_2.42.4-1 build-essential_12.12+b1 bzip2_1.0.8-6+b2 coreutils_9.10-1 cpp_4:16.1.0-3 cpp-16_16.2.0-4 cpp-16-loongarch64-linux-gnu_16.2.0-4 cpp-loongarch64-linux-gnu_4:16.1.0-3 dash_0.5.12-12+b1 debconf_1.5.92 debhelper_14.5 debianutils_5.24 dh-autoreconf_23 dh-exec_0.31+b2 dh-python_7.20261025 dh-strip-nondeterminism_1.15.1-1 diffutils_1:3.12-1+b1 dpkg_1.23.11 dpkg-dev_1.23.11 dwz_0.17-1 file_1:5.47-4 findutils_4.11.0-3 g++_4:16.1.0-3 g++-16_16.2.0-4 g++-16-loongarch64-linux-gnu_16.2.0-4 g++-loongarch64-linux-gnu_4:16.1.0-3 gcc_4:16.1.0-3 gcc-16_16.2.0-4 gcc-16-base_16.2.0-4 gcc-16-loongarch64-linux-gnu_16.2.0-4 gcc-loongarch64-linux-gnu_4:16.1.0-3 gettext_1.0-5 gettext-base_1.0-5 grep_3.12-1+b1 groff-base_1.24.2-2 gzip_1.14-1 hostname_3.25+b1 init-system-helpers_1.69+nmu3 intltool-debian_0.35.0+20060710.6 libacl1_2.4.0-1 libarchive-zip-perl_1.68-1 libasan8_16.2.0-4 libatomic1_16.2.0-4 libattr1_1:2.6.0-1 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1+b2 libbinutils_2.47.50.20261021-1 libblas3_3.12.1-8 libblkid1_2.42.4-1 libboost-dev_1.92.0.1 libboost-regex1.92-dev_1.92.0-4+b1 libboost-regex1.92.0_1.92.0-4+b1 libboost1.92-dev_1.92.0-4+b1 libbz2-1.0_1.0.8-6+b2 libc-bin_2.43-7 libc-dev-bin_2.43-7 libc-gconv-modules-extra_2.43-7 libc6_2.43-7 libc6-dev_2.43-7 libcap-ng0_0.9.6-1+b1 libcc1-0_16.2.0-4 libcrypt1_1:4.5.2+20251210-1 libctf-nobfd0_2.47.50.20261021-1 libctf0_2.47.50.20261021-1 libdb5.3t64_5.3.28+dfsg2-11+b1 libdebconfclient0_0.283 libdebhelper-perl_14.5 libdpkg-perl_1.23.11 libelf1t64_0.196-1 libexpat1_2.9.0-1 libexpat1-dev_2.9.0-1 libffi8_3.8.0-2 libfile-stripnondeterminism-perl_1.15.1-1 libgcc-16-dev_16.2.0-4 libgcc-s1_16.2.0-4 libgdbm-compat4t64_1.26-1+b2 libgdbm6t64_1.26-1+b2 libgfortran5_16.2.0-4 libgmp10_2:6.3.0+dfsg-5+b2 libgomp1_16.2.0-4 libisl23_0.28-1 libitm1_16.2.0-4 libjansson4_2.15.1-1 libjs-sphinxdoc_9.2.0-1 liblapack3_3.12.1-8 liblsan0_16.2.0-4 liblzma5_5.8.4-1 libmagic-mgc_1:5.47-4 libmagic1t64_1:5.47-4 libmd0_1.3.0-1 libmount1_2.42.4-1 libmpc3_1.3.1-3 libmpfr6_4.2.2-3 libncursesw6_6.6+20260608-2 libpam-modules_1.7.0-8 libpam-modules-bin_1.7.0-8 libpam-runtime_1.7.0-8 libpam0g_1.7.0-8 libpcre2-8-0_10.48-3.1 libperl5.42_5.42.3-1 libpipeline1_1.5.8-3 libpython3-all-dev_3.14.8-1 libpython3-dev_3.14.8-1 libpython3-stdlib_3.14.8-1 libpython3.14_3.14.10-1 libpython3.14-dev_3.14.10-1 libpython3.14-minimal_3.14.10-1 libpython3.14-stdlib_3.14.10-1 libpython3.15_3.15.2-1 libpython3.15-dev_3.15.2-1 libpython3.15-minimal_3.15.2-1 libpython3.15-stdlib_3.15.2-1 libreadline8t64_8.3-4 libselinux1_3.11-2.1+b1 libsframe3_2.47.50.20261021-1 libsimde-dev_0.8.4~rc3-5 libsmartcols1_2.42.4-1 libsqlite3-0_3.53.4-2 libssl3t64_3.6.5-1 libstdc++-16-dev_16.2.0-4 libstdc++6_16.2.0-4 libsystemd0_262.1-1 libtinfo6_6.6+20260608-2 libtool_2.6.2-3 libtsan2_16.2.0-4 libubsan1_16.2.0-4 libuchardet0_0.0.8-2+b2 libudev1_262.1-1 libunistring5_1.4.2-1 libuuid1_2.42.4-1 libxml2-16_2.15.4+dfsg-1+b1 libzstd1_1.5.7+dfsg-4 linux-libc-dev_7.2.12-1 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260302-2 media-types_14.0.0 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 netbase_6.6 openssl-provider-legacy_3.6.5-1 patch_2.8.1-1 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 po-debconf_1.0.22 python3_3.14.8-1 python3-all_3.14.8-1 python3-all-dev_3.14.8-1 python3-dev_3.14.8-1 python3-minimal_3.14.8-1 python3-numpy_1:2.4.6+ds-5+b1 python3-numpy-dev_1:2.4.6+ds-5+b1 python3-setuptools_84.2.0-1 python3.14_3.14.10-1 python3.14-dev_3.14.10-1 python3.14-minimal_3.14.10-1 python3.15_3.15.2-1 python3.15-dev_3.15.2-1 python3.15-minimal_3.15.2-1 readline-common_8.3-4 sed_4.9-3 sensible-utils_0.0.26 swig_4.5.1-2 sysvinit-utils_3.18-1 tar_1.35+dfsg-6 tzdata_2026e-1 util-linux_2.42.4-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-4 zlib1g-dev_1:1.3.dfsg+really1.3.2-4 +------------------------------------------------------------------------------+ | Build Sun, 01 Nov 2026 23:37:34 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: consensuscore Binary: libconsensuscore-dev, python3-pbconsensuscore Architecture: any Version: 1.1.1+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Homepage: https://github.com/PacificBiosciences/ConsensusCore Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/med-team/consensuscore Vcs-Git: https://salsa.debian.org/med-team/consensuscore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-exec, dh-sequence-python3, architecture-is-64-bit [!i386], architecture-is-little-endian, libboost-dev, libsimde-dev, python3-all-dev, python3-numpy, python3-numpy-dev, python3-setuptools, swig Package-List: libconsensuscore-dev deb libdevel optional arch=any python3-pbconsensuscore deb python optional arch=any Checksums-Sha1: 06118ce273ef10180336ab071fd86dc60aea7168 363936 consensuscore_1.1.1+dfsg.orig.tar.xz ac12995d4ce310fb671f720f1229e09aef7f26c2 10340 consensuscore_1.1.1+dfsg-9.debian.tar.xz Checksums-Sha256: 47865e3769e2d6647003f70ffce68f8a5b2f69a6ae04ff27d106b3ec84660d82 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 4db0ae878e268792a962af9d1bc855fe16811c67404673045a7ef2dabe5f458e 10340 consensuscore_1.1.1+dfsg-9.debian.tar.xz Files: 17991299008d1c01e25ce3984b7fe7bd 363936 consensuscore_1.1.1+dfsg.orig.tar.xz 949772e680d176bd186c5326388ebdcf 10340 consensuscore_1.1.1+dfsg-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmlgqxwRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBp7ZhAAvUnjkG3krPpq/gREqdP+b35fjw3OJN8w 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/usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting consensuscore in /build/reproducible-path/consensuscore-1.1.1+dfsg dpkg-source: info: unpacking consensuscore_1.1.1+dfsg.orig.tar.xz dpkg-source: info: unpacking consensuscore_1.1.1+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying gcc-6.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying check_boost_version.patch dpkg-source: info: applying sequence_setuptools.patch dpkg-source: info: applying portable_simd.patch clean up apt cache ------------------ Can't exec "apt-get": No such file or directory at /usr/libexec/sbuild-usernsexec line 613. Failed to exec: apt-get: No such file or directory at /usr/libexec/sbuild-usernsexec line 614. E: cleaning the apt cache failed with 512 Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 1.1.1+dfsg-9+b3 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1767942233 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package consensuscore dpkg-buildpackage: info: source version 1.1.1+dfsg-9+b3 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by loong64 Build Daemon (loongson-conova-02) dpkg-source --before-build . dpkg-buildpackage: info: host architecture loong64 debian/rules clean dh clean --buildsystem=pybuild debian/rules execute_before_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' ! test -f src/SWIG/numpy.i.orig || mv -v src/SWIG/numpy.i.orig src/SWIG/numpy.i make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_auto_clean -O--buildsystem=pybuild I: pybuild base:383: python3.15 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.15_pbconsensuscore/build' (and everything under it) 'build/bdist.linux-loongarch64' does not exist -- can't clean it 'build/scripts-3.15' does not exist -- can't clean it I: pybuild base:383: python3.14 setup.py clean WARNING: '' not a valid package name; please use only .-separated package names in setup.py running clean removing '/build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build' (and everything under it) 'build/bdist.linux-loongarch64' does not exist -- can't clean it 'build/scripts-3.14' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:383: python3.15 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config I: pybuild base:383: python3.14 setup.py config WARNING: '' not a valid package name; please use only .-separated package names in setup.py running config debian/rules execute_before_dh_auto_build make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' test -f src/SWIG/numpy.i.orig || mv -v src/SWIG/numpy.i src/SWIG/numpy.i.orig renamed 'src/SWIG/numpy.i' -> 'src/SWIG/numpy.i.orig' cp /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include/numpy/numpy.i src/SWIG/numpy.i make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:383: /usr/bin/python3.15 setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.5.1 PYTHON_INCLUDE = /usr/include/python3.15 NUMPY_INCLUDE = /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/PairwiseAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AlignConfig.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/LinearAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Align/AffineAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Edna/EdnaCounts.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/RangeFinder.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphTraversals.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraph.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o -MM src/C++/Align/AlignConfig.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o src/C++/Align/PairwiseAlignment.cpp: In function ‘std::vector ConsensusCore::TargetToQueryPositions(const std::string&)’: src/C++/Align/PairwiseAlignment.cpp:198:9: warning: variable ‘targetPos’ set but not used [-Wunused-but-set-variable=] 198 | int targetPos = 0; | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o -MM src/C++/Poa/PoaConsensus.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Poa/PoaGraphImpl.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o -MM src/C++/Align/LinearAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Checksum.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o -MM src/C++/Align/AffineAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o -MM src/C++/Align/PairwiseAlignment.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o -MM src/C++/Poa/PoaGraph.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Coverage.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Read.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o -MM src/C++/Edna/EdnaCounts.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Logging/Logging.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Statistics/Binomial.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o -MM src/C++/Coverage.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Feature.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o -MM src/C++/Logging/Logging.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/SparseMatrix.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o -MM src/C++/Matrix/SparseMatrix.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o -MM src/C++/Feature.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Matrix/DenseMatrix.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o -MM src/C++/Poa/RangeFinder.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SseRecursor.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o -MM src/C++/Read.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/SimpleRecursor.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o -MM src/C++/Matrix/DenseMatrix.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/QuiverConfig.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o -MM src/C++/Checksum.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/Diploid.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o -MM src/C++/Statistics/Binomial.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o -MM src/C++/Poa/PoaGraphTraversals.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o -MM src/C++/Quiver/QuiverConfig.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MultiReadMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/detail/RecursorBase.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o -MM src/C++/Quiver/Diploid.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/MutationEnumerator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:190:16: required from here 190 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:191:16: required from here 191 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:192:16: required from here 192 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SimpleRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:193:16: required from here 193 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:194:16: required from here 194 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::QvEvaluator]’: src/C++/Quiver/MutationScorer.cpp:195:16: required from here 195 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/MutationScorer.cpp: In instantiation of ‘ConsensusCore::MutationScorer::MutationScorer(const EvaluatorType&, const R&) [with R = ConsensusCore::SseRecursor; EvaluatorType = ConsensusCore::EdnaEvaluator]’: src/C++/Quiver/MutationScorer.cpp:196:16: required from here 196 | template class MutationScorer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/MutationScorer.cpp:30:41: warning: catching polymorphic type ‘class ConsensusCore::AlphaBetaMismatchException’ by value [-Wcatch-value=] 30 | } catch (AlphaBetaMismatchException e) { | ^ src/C++/Quiver/detail/RecursorBase.cpp: In instantiation of ‘const ConsensusCore::PairwiseAlignment* ConsensusCore::detail::RecursorBase::Alignment(const E&, const M&) const [with M = ConsensusCore::DenseMatrix; E = ConsensusCore::QvEvaluator; C = ConsensusCore::detail::ViterbiCombiner]’: src/C++/Quiver/detail/RecursorBase.cpp:221:16: required from here 221 | template class RecursorBase; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp:94:11: warning: variable ‘pathScore’ set but not used [-Wunused-but-set-variable=] 94 | float pathScore = 0; | ^~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp: In instantiation of ‘const ConsensusCore::PairwiseAlignment* ConsensusCore::detail::RecursorBase::Alignment(const E&, const M&) const [with M = ConsensusCore::SparseMatrix; E = ConsensusCore::QvEvaluator; C = ConsensusCore::detail::ViterbiCombiner]’: src/C++/Quiver/detail/RecursorBase.cpp:222:16: required from here 222 | template class RecursorBase; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp:94:11: warning: variable ‘pathScore’ set but not used [-Wunused-but-set-variable=] 94 | float pathScore = 0; | ^~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp: In instantiation of ‘const ConsensusCore::PairwiseAlignment* ConsensusCore::detail::RecursorBase::Alignment(const E&, const M&) const [with M = ConsensusCore::SparseMatrix; E = ConsensusCore::QvEvaluator; C = ConsensusCore::detail::SumProductCombiner]’: src/C++/Quiver/detail/RecursorBase.cpp:223:16: required from here 223 | template class RecursorBase; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp:94:11: warning: variable ‘pathScore’ set but not used [-Wunused-but-set-variable=] 94 | float pathScore = 0; | ^~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp: In instantiation of ‘const ConsensusCore::PairwiseAlignment* ConsensusCore::detail::RecursorBase::Alignment(const E&, const M&) const [with M = ConsensusCore::SparseMatrix; E = ConsensusCore::EdnaEvaluator; C = ConsensusCore::detail::SumProductCombiner]’: src/C++/Quiver/detail/RecursorBase.cpp:224:16: required from here 224 | template class RecursorBase; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/C++/Quiver/detail/RecursorBase.cpp:94:11: warning: variable ‘pathScore’ set but not used [-Wunused-but-set-variable=] 94 | float pathScore = 0; | ^~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o -MM src/C++/Quiver/QuiverConsensus.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o -MM src/C++/Quiver/MutationEnumerator.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Quiver/ReadScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Features.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o -MM src/C++/Quiver/detail/RecursorBase.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Version.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o -MM src/C++/Features.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Utils.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o -MM src/C++/Quiver/MutationScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o -MM src/C++/Quiver/ReadScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o -MM src/C++/Utils.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Sequence.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -pedantic -std=c++14 -Wall -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -c src/C++/Mutation.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o -MM src/C++/Sequence.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o -MM src/C++/Quiver/SimpleRecursor.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o -MM src/C++/Version.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o -MM src/C++/Quiver/MultiReadMutationScorer.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o -MM src/C++/Poa/PoaGraphImpl.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o -MM src/C++/Mutation.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.d g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -MT /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o -MM src/C++/Quiver/SseRecursor.cpp > /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.d ar crs /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PairwiseAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AlignConfig.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/LinearAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/AffineAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/EdnaCounts.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RangeFinder.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphTraversals.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraph.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/PoaGraphImpl.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Checksum.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Coverage.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Read.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Logging.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Binomial.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Feature.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SparseMatrix.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/DenseMatrix.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SseRecursor.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/SimpleRecursor.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/QuiverConfig.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Diploid.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MultiReadMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/RecursorBase.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/MutationEnumerator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/ReadScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Features.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Version.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Utils.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Sequence.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/Mutation.o touch /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.5.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.15 -I /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' I: pybuild base:383: /usr/bin/python3 setup.py build WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.5.1 PYTHON_INCLUDE = /usr/include/python3.14 NUMPY_INCLUDE = /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.5.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.14 -I /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make test make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make -f make/Cpp.mk -j8 make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestDiploidQuiver.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestDiploidQuiver.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMultiReadMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMultiReadMutationScorer.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutationScorer.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationScorer.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestPoaConsensus.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPoaConsensus.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/ParameterSettings.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/ParameterSettings.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestCoverage.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestCoverage.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestRecursors.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestRecursors.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMatrixFacades.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMatrixFacades.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutations.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutations.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestPairwiseAlignment.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPairwiseAlignment.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestSparseVector.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestSparseVector.o mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestQvEvaluator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestQvEvaluator.o In file included from /usr/include/boost/bind.hpp:30, from /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestQvEvaluator.cpp:5: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O0 -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 -c /build/reproducible-path/consensuscore-1.1.1+dfsg/src/Tests/TestMutationEnumerator.cpp -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationEnumerator.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestDiploidQuiver.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMultiReadMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationScorer.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPoaConsensus.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/ParameterSettings.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestCoverage.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestRecursors.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMatrixFacades.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutations.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestPairwiseAlignment.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestSparseVector.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestQvEvaluator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/TestMutationEnumerator.o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0 /build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0/gmock-gtest-all.cc /build/reproducible-path/consensuscore-1.1.1+dfsg/external/gmock-1.7.0/gmock_main.cc -lpthread -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/test-runner GTEST_OUTPUT="xml:tests-summary.xml" /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Tests/test-runner Running main() from gmock_main.cc [==========] Running 158 tests from 29 test cases. [----------] Global test environment set-up. [----------] 1 test from QuiverConfigTableTests [ RUN ] QuiverConfigTableTests.IllegalChemistry [ OK ] QuiverConfigTableTests.IllegalChemistry (1 ms) [----------] 1 test from QuiverConfigTableTests (1 ms total) [----------] 3 tests from MutationOrientationTests [ RUN ] MutationOrientationTests.ReadScoresMutation1 [ OK ] MutationOrientationTests.ReadScoresMutation1 (0 ms) [ RUN ] MutationOrientationTests.ReadScoresMutation2 [ OK ] MutationOrientationTests.ReadScoresMutation2 (0 ms) [ RUN ] MutationOrientationTests.OrientedMutation [ OK ] MutationOrientationTests.OrientedMutation (0 ms) [----------] 3 tests from MutationOrientationTests (0 ms total) [----------] 11 tests from MultiReadMutationScorerTest/0, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MultiReadMutationScorerTest/0.Template [ OK ] MultiReadMutationScorerTest/0.Template (0 ms) [ RUN ] MultiReadMutationScorerTest/0.BasicTest [ OK ] MultiReadMutationScorerTest/0.BasicTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.ManyMutationTest [ OK ] MultiReadMutationScorerTest/0.ManyMutationTest (2 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyConstructorTest [ OK ] MultiReadMutationScorerTest/0.CopyConstructorTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.ReverseStrandTest [ OK ] MultiReadMutationScorerTest/0.ReverseStrandTest (1 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtBeginning (0 ms) [ RUN ] MultiReadMutationScorerTest/0.TestMutationsAtEnd [ OK ] MultiReadMutationScorerTest/0.TestMutationsAtEnd (0 ms) [ RUN ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 [ OK ] MultiReadMutationScorerTest/0.NonSpanningReadsTest1 (1 ms) [ RUN ] MultiReadMutationScorerTest/0.CopyTest [ OK ] MultiReadMutationScorerTest/0.CopyTest (0 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseSubstitutionsAtBounds (1 ms) [ RUN ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds [ OK ] MultiReadMutationScorerTest/0.MultiBaseIndelsAtBounds (0 ms) [----------] 11 tests from MultiReadMutationScorerTest/0 (6 ms total) [----------] 8 tests from MutationScorerTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/0.BasicTest [ OK ] MutationScorerTest/0.BasicTest (0 ms) [ RUN ] MutationScorerTest/0.CopyTest [ OK ] MutationScorerTest/0.CopyTest (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtBeginning [ OK ] MutationScorerTest/0.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/0.MutationsAtEnd [ OK ] MutationScorerTest/0.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/0.TinyTemplate [ OK ] MutationScorerTest/0.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/0.TemplateMutationWorkflow [ OK ] MutationScorerTest/0.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/0.DinucleotideInsertionTest [ OK ] MutationScorerTest/0.DinucleotideInsertionTest (2 ms) [ RUN ] MutationScorerTest/0.DinucleotideDeletionTest [ OK ] MutationScorerTest/0.DinucleotideDeletionTest (2 ms) [----------] 8 tests from MutationScorerTest/0 (4 ms total) [----------] 8 tests from MutationScorerTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/1.BasicTest [ OK ] MutationScorerTest/1.BasicTest (0 ms) [ RUN ] MutationScorerTest/1.CopyTest [ OK ] MutationScorerTest/1.CopyTest (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtBeginning [ OK ] MutationScorerTest/1.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/1.MutationsAtEnd [ OK ] MutationScorerTest/1.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/1.TinyTemplate [ OK ] MutationScorerTest/1.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/1.TemplateMutationWorkflow [ OK ] MutationScorerTest/1.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/1.DinucleotideInsertionTest [ OK ] MutationScorerTest/1.DinucleotideInsertionTest (3 ms) [ RUN ] MutationScorerTest/1.DinucleotideDeletionTest [ OK ] MutationScorerTest/1.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/1 (4 ms total) [----------] 8 tests from MutationScorerTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] MutationScorerTest/2.BasicTest [ OK ] MutationScorerTest/2.BasicTest (0 ms) [ RUN ] MutationScorerTest/2.CopyTest [ OK ] MutationScorerTest/2.CopyTest (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtBeginning [ OK ] MutationScorerTest/2.MutationsAtBeginning (0 ms) [ RUN ] MutationScorerTest/2.MutationsAtEnd [ OK ] MutationScorerTest/2.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/2.TinyTemplate [ OK ] MutationScorerTest/2.TinyTemplate (1 ms) [ RUN ] MutationScorerTest/2.TemplateMutationWorkflow [ OK ] MutationScorerTest/2.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/2.DinucleotideInsertionTest [ OK ] MutationScorerTest/2.DinucleotideInsertionTest (2 ms) [ RUN ] MutationScorerTest/2.DinucleotideDeletionTest [ OK ] MutationScorerTest/2.DinucleotideDeletionTest (1 ms) [----------] 8 tests from MutationScorerTest/2 (4 ms total) [----------] 8 tests from MutationScorerTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] MutationScorerTest/3.BasicTest [ OK ] MutationScorerTest/3.BasicTest (0 ms) [ RUN ] MutationScorerTest/3.CopyTest [ OK ] MutationScorerTest/3.CopyTest (0 ms) [ RUN ] MutationScorerTest/3.MutationsAtBeginning [ OK ] MutationScorerTest/3.MutationsAtBeginning (1 ms) [ RUN ] MutationScorerTest/3.MutationsAtEnd [ OK ] MutationScorerTest/3.MutationsAtEnd (0 ms) [ RUN ] MutationScorerTest/3.TinyTemplate [ OK ] MutationScorerTest/3.TinyTemplate (0 ms) [ RUN ] MutationScorerTest/3.TemplateMutationWorkflow [ OK ] MutationScorerTest/3.TemplateMutationWorkflow (0 ms) [ RUN ] MutationScorerTest/3.DinucleotideInsertionTest [ OK ] MutationScorerTest/3.DinucleotideInsertionTest (2 ms) [ RUN ] MutationScorerTest/3.DinucleotideDeletionTest [ OK ] MutationScorerTest/3.DinucleotideDeletionTest (2 ms) [----------] 8 tests from MutationScorerTest/3 (5 ms total) [----------] 4 tests from PoaGraph [ RUN ] PoaGraph.SmallBasicTest [ OK ] PoaGraph.SmallBasicTest (0 ms) [ RUN ] PoaGraph.SmallExtraTests [ OK ] PoaGraph.SmallExtraTests (1 ms) [ RUN ] PoaGraph.SmallMismatchTests [ OK ] PoaGraph.SmallMismatchTests (0 ms) [ RUN ] PoaGraph.SmallDeletionTests [ OK ] PoaGraph.SmallDeletionTests (1 ms) [----------] 4 tests from PoaGraph (2 ms total) [----------] 8 tests from PoaConsensus [ RUN ] PoaConsensus.TestSimple [ OK ] PoaConsensus.TestSimple (0 ms) [ RUN ] PoaConsensus.TestOverhangSecond [ OK ] PoaConsensus.TestOverhangSecond (0 ms) [ RUN ] PoaConsensus.SmallSemiglobalTest [ OK ] PoaConsensus.SmallSemiglobalTest (0 ms) [ RUN ] PoaConsensus.SmallTilingTest [ OK ] PoaConsensus.SmallTilingTest (1 ms) [ RUN ] PoaConsensus.TestVerboseGraphVizOutput [ OK ] PoaConsensus.TestVerboseGraphVizOutput (0 ms) [ RUN ] PoaConsensus.TestLocalStaggered dot -Tpng local-staggered.dot > local-staggered.png sh: 1: dot: not found [ OK ] PoaConsensus.TestLocalStaggered (6 ms) [ RUN ] PoaConsensus.TestLongInsert [ OK ] PoaConsensus.TestLongInsert (1 ms) [ RUN ] PoaConsensus.NondeterminismRegressionTest [ OK ] PoaConsensus.NondeterminismRegressionTest (599 ms) [----------] 8 tests from PoaConsensus (608 ms total) [----------] 3 tests from CoverageTests [ RUN ] CoverageTests.CoverageInWindowTest [ OK ] CoverageTests.CoverageInWindowTest (0 ms) [ RUN ] CoverageTests.CoveredIntervalsTest [ OK ] CoverageTests.CoveredIntervalsTest (0 ms) [ RUN ] CoverageTests.CoveredIntervalsTest2 [ OK ] CoverageTests.CoveredIntervalsTest2 (0 ms) [----------] 3 tests from CoverageTests (0 ms total) [----------] 7 tests from RecursorTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/0.SmallMatchTest [ OK ] RecursorTest/0.SmallMatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMismatchTest [ OK ] RecursorTest/0.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/0.SmallMergeTest [ OK ] RecursorTest/0.SmallMergeTest (0 ms) [ RUN ] RecursorTest/0.MediumSizedTest [ OK ] RecursorTest/0.MediumSizedTest (1 ms) [ RUN ] RecursorTest/0.LinkTest [ OK ] RecursorTest/0.LinkTest (0 ms) [ RUN ] RecursorTest/0.ExtendAlphaTest [ OK ] RecursorTest/0.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/0.ExtendBetaTest [ OK ] RecursorTest/0.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/0 (1 ms total) [----------] 7 tests from RecursorTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/1.SmallMatchTest [ OK ] RecursorTest/1.SmallMatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMismatchTest [ OK ] RecursorTest/1.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/1.SmallMergeTest [ OK ] RecursorTest/1.SmallMergeTest (0 ms) [ RUN ] RecursorTest/1.MediumSizedTest [ OK ] RecursorTest/1.MediumSizedTest (3 ms) [ RUN ] RecursorTest/1.LinkTest [ OK ] RecursorTest/1.LinkTest (0 ms) [ RUN ] RecursorTest/1.ExtendAlphaTest [ OK ] RecursorTest/1.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/1.ExtendBetaTest [ OK ] RecursorTest/1.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/1 (3 ms total) [----------] 7 tests from RecursorTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorTest/2.SmallMatchTest [ OK ] RecursorTest/2.SmallMatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMismatchTest [ OK ] RecursorTest/2.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/2.SmallMergeTest [ OK ] RecursorTest/2.SmallMergeTest (0 ms) [ RUN ] RecursorTest/2.MediumSizedTest [ OK ] RecursorTest/2.MediumSizedTest (6 ms) [ RUN ] RecursorTest/2.LinkTest [ OK ] RecursorTest/2.LinkTest (0 ms) [ RUN ] RecursorTest/2.ExtendAlphaTest [ OK ] RecursorTest/2.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/2.ExtendBetaTest [ OK ] RecursorTest/2.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/2 (6 ms total) [----------] 7 tests from RecursorTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorTest/3.SmallMatchTest [ OK ] RecursorTest/3.SmallMatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMismatchTest [ OK ] RecursorTest/3.SmallMismatchTest (0 ms) [ RUN ] RecursorTest/3.SmallMergeTest [ OK ] RecursorTest/3.SmallMergeTest (0 ms) [ RUN ] RecursorTest/3.MediumSizedTest [ OK ] RecursorTest/3.MediumSizedTest (5 ms) [ RUN ] RecursorTest/3.LinkTest [ OK ] RecursorTest/3.LinkTest (0 ms) [ RUN ] RecursorTest/3.ExtendAlphaTest [ OK ] RecursorTest/3.ExtendAlphaTest (0 ms) [ RUN ] RecursorTest/3.ExtendBetaTest [ OK ] RecursorTest/3.ExtendBetaTest (0 ms) [----------] 7 tests from RecursorTest/3 (5 ms total) [----------] 5 tests from RecursorFuzzTest/0, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/0.AlphaBetaConcordance [ OK ] RecursorFuzzTest/0.AlphaBetaConcordance (18 ms) [ RUN ] RecursorFuzzTest/0.Alignment [ OK ] RecursorFuzzTest/0.Alignment (19 ms) [ RUN ] RecursorFuzzTest/0.LinkAlphaBeta [ OK ] RecursorFuzzTest/0.LinkAlphaBeta (19 ms) [ RUN ] RecursorFuzzTest/0.ExtendAlpha [ OK ] RecursorFuzzTest/0.ExtendAlpha (31 ms) [ RUN ] RecursorFuzzTest/0.ExtendBeta [ OK ] RecursorFuzzTest/0.ExtendBeta (33 ms) [----------] 5 tests from RecursorFuzzTest/0 (120 ms total) [----------] 5 tests from RecursorFuzzTest/1, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/1.AlphaBetaConcordance [ OK ] RecursorFuzzTest/1.AlphaBetaConcordance (82 ms) [ RUN ] RecursorFuzzTest/1.Alignment [ OK ] RecursorFuzzTest/1.Alignment (85 ms) [ RUN ] RecursorFuzzTest/1.LinkAlphaBeta [ OK ] RecursorFuzzTest/1.LinkAlphaBeta (85 ms) [ RUN ] RecursorFuzzTest/1.ExtendAlpha [ OK ] RecursorFuzzTest/1.ExtendAlpha (32 ms) [ RUN ] RecursorFuzzTest/1.ExtendBeta [ OK ] RecursorFuzzTest/1.ExtendBeta (33 ms) [----------] 5 tests from RecursorFuzzTest/1 (317 ms total) [----------] 5 tests from RecursorFuzzTest/2, where TypeParam = ConsensusCore::SimpleRecursor [ RUN ] RecursorFuzzTest/2.AlphaBetaConcordance [ OK ] RecursorFuzzTest/2.AlphaBetaConcordance (115 ms) [ RUN ] RecursorFuzzTest/2.Alignment [ OK ] RecursorFuzzTest/2.Alignment (117 ms) [ RUN ] RecursorFuzzTest/2.LinkAlphaBeta [ OK ] RecursorFuzzTest/2.LinkAlphaBeta (139 ms) [ RUN ] RecursorFuzzTest/2.ExtendAlpha [ OK ] RecursorFuzzTest/2.ExtendAlpha (36 ms) [ RUN ] RecursorFuzzTest/2.ExtendBeta [ OK ] RecursorFuzzTest/2.ExtendBeta (35 ms) [----------] 5 tests from RecursorFuzzTest/2 (443 ms total) [----------] 5 tests from RecursorFuzzTest/3, where TypeParam = ConsensusCore::SseRecursor [ RUN ] RecursorFuzzTest/3.AlphaBetaConcordance [ OK ] RecursorFuzzTest/3.AlphaBetaConcordance (93 ms) [ RUN ] RecursorFuzzTest/3.Alignment [ OK ] RecursorFuzzTest/3.Alignment (95 ms) [ RUN ] RecursorFuzzTest/3.LinkAlphaBeta [ OK ] RecursorFuzzTest/3.LinkAlphaBeta (96 ms) [ RUN ] RecursorFuzzTest/3.ExtendAlpha [ OK ] RecursorFuzzTest/3.ExtendAlpha (34 ms) [ RUN ] RecursorFuzzTest/3.ExtendBeta [ OK ] RecursorFuzzTest/3.ExtendBeta (35 ms) [----------] 5 tests from RecursorFuzzTest/3 (353 ms total) [----------] 11 tests from MatrixTest/0, where TypeParam = ConsensusCore::DenseMatrix [ RUN ] MatrixTest/0.Basic [ OK ] MatrixTest/0.Basic (0 ms) [ RUN ] MatrixTest/0.Nullability [ OK ] MatrixTest/0.Nullability (0 ms) [ RUN ] MatrixTest/0.Ranges [ OK ] MatrixTest/0.Ranges (0 ms) [ RUN ] MatrixTest/0.IsColumnEmpty [ OK ] MatrixTest/0.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/0.SSE [ OK ] MatrixTest/0.SSE (0 ms) [ RUN ] MatrixTest/0.ToHostArray [ OK ] MatrixTest/0.ToHostArray (0 ms) [ RUN ] MatrixTest/0.NonSequentialAccess [ OK ] MatrixTest/0.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/0.Holes [ OK ] MatrixTest/0.Holes (0 ms) [ RUN ] MatrixTest/0.BigBandedMatrix N13ConsensusCore11DenseMatrixE : 1000000 [ OK ] MatrixTest/0.BigBandedMatrix (3 ms) [ RUN ] MatrixTest/0.BigIrregularBandedMatrix [ OK ] MatrixTest/0.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/0.CopyTest [ OK ] MatrixTest/0.CopyTest (0 ms) [----------] 11 tests from MatrixTest/0 (3 ms total) [----------] 11 tests from MatrixTest/1, where TypeParam = ConsensusCore::SparseMatrix [ RUN ] MatrixTest/1.Basic [ OK ] MatrixTest/1.Basic (0 ms) [ RUN ] MatrixTest/1.Nullability [ OK ] MatrixTest/1.Nullability (0 ms) [ RUN ] MatrixTest/1.Ranges [ OK ] MatrixTest/1.Ranges (0 ms) [ RUN ] MatrixTest/1.IsColumnEmpty [ OK ] MatrixTest/1.IsColumnEmpty (0 ms) [ RUN ] MatrixTest/1.SSE [ OK ] MatrixTest/1.SSE (0 ms) [ RUN ] MatrixTest/1.ToHostArray [ OK ] MatrixTest/1.ToHostArray (0 ms) [ RUN ] MatrixTest/1.NonSequentialAccess [ OK ] MatrixTest/1.NonSequentialAccess (0 ms) [ RUN ] MatrixTest/1.Holes [ OK ] MatrixTest/1.Holes (0 ms) [ RUN ] MatrixTest/1.BigBandedMatrix N13ConsensusCore12SparseMatrixE : 1001976 [ OK ] MatrixTest/1.BigBandedMatrix (10 ms) [ RUN ] MatrixTest/1.BigIrregularBandedMatrix [ OK ] MatrixTest/1.BigIrregularBandedMatrix (0 ms) [ RUN ] MatrixTest/1.CopyTest [ OK ] MatrixTest/1.CopyTest (0 ms) [----------] 11 tests from MatrixTest/1 (10 ms total) [----------] 7 tests from MutationTest [ RUN ] MutationTest.BasicTest [ OK ] MutationTest.BasicTest (0 ms) [ RUN ] MutationTest.DeleteTest [ OK ] MutationTest.DeleteTest (0 ms) [ RUN ] MutationTest.InsertTest [ OK ] MutationTest.InsertTest (0 ms) [ RUN ] MutationTest.ApplyMutationsTest [ OK ] MutationTest.ApplyMutationsTest (0 ms) [ RUN ] MutationTest.ApplyMutationsToSamePositionTest [ OK ] MutationTest.ApplyMutationsToSamePositionTest (0 ms) [ RUN ] MutationTest.MutationsToTranscript [ OK ] MutationTest.MutationsToTranscript (0 ms) [ RUN ] MutationTest.MutatedTemplatePositionsTest [ OK ] MutationTest.MutatedTemplatePositionsTest (1 ms) [----------] 7 tests from MutationTest (1 ms total) [----------] 3 tests from PairwiseAlignmentTests [ RUN ] PairwiseAlignmentTests.RepresentationTests [ OK ] PairwiseAlignmentTests.RepresentationTests (0 ms) [ RUN ] PairwiseAlignmentTests.GlobalAlignmentTests [ OK ] PairwiseAlignmentTests.GlobalAlignmentTests (0 ms) [ RUN ] PairwiseAlignmentTests.TargetPositionsInQueryTest [ OK ] PairwiseAlignmentTests.TargetPositionsInQueryTest (0 ms) [----------] 3 tests from PairwiseAlignmentTests (0 ms total) [----------] 2 tests from AffineAlignmentTests [ RUN ] AffineAlignmentTests.BasicTests [ OK ] AffineAlignmentTests.BasicTests (0 ms) [ RUN ] AffineAlignmentTests.LargeGapTest [ OK ] AffineAlignmentTests.LargeGapTest (8 ms) [----------] 2 tests from AffineAlignmentTests (8 ms total) [----------] 1 test from IupacAlignmentTests [ RUN ] IupacAlignmentTests.BasicTest [ OK ] IupacAlignmentTests.BasicTest (1 ms) [----------] 1 test from IupacAlignmentTests (1 ms total) [----------] 1 test from LinearAlignmentTests [ RUN ] LinearAlignmentTests.BasicTest [ OK ] LinearAlignmentTests.BasicTest (0 ms) [----------] 1 test from LinearAlignmentTests (0 ms total) [----------] 2 tests from SparseVectorTest [ RUN ] SparseVectorTest.BasicTest [ OK ] SparseVectorTest.BasicTest (0 ms) [ RUN ] SparseVectorTest.BasicTest2 [ OK ] SparseVectorTest.BasicTest2 (0 ms) [----------] 2 tests from SparseVectorTest (0 ms total) [----------] 1 test from SparseVector [ RUN ] SparseVector.CopyTest [ OK ] SparseVector.CopyTest (0 ms) [----------] 1 test from SparseVector (0 ms total) [----------] 5 tests from QvEvaluatorTest [ RUN ] QvEvaluatorTest.IncVsInc4 [ OK ] QvEvaluatorTest.IncVsInc4 (137 ms) [ RUN ] QvEvaluatorTest.DelVsDel4 [ OK ] QvEvaluatorTest.DelVsDel4 (135 ms) [ RUN ] QvEvaluatorTest.ExtraVsExtra4 [ OK ] QvEvaluatorTest.ExtraVsExtra4 (168 ms) [ RUN ] QvEvaluatorTest.MergeVsMerge4 [ OK ] QvEvaluatorTest.MergeVsMerge4 (111 ms) [ RUN ] QvEvaluatorTest.BadTagTest [ OK ] QvEvaluatorTest.BadTagTest (6 ms) [----------] 5 tests from QvEvaluatorTest (557 ms total) [----------] 4 tests from MutationEnumerationTest [ RUN ] MutationEnumerationTest.TestAllMutations [ OK ] MutationEnumerationTest.TestAllMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueMutations [ OK ] MutationEnumerationTest.TestUniqueMutations (0 ms) [ RUN ] MutationEnumerationTest.TestUniqueNearbyMutations [ OK ] MutationEnumerationTest.TestUniqueNearbyMutations (4 ms) [ RUN ] MutationEnumerationTest.TestDinucleotideMutations [ OK ] MutationEnumerationTest.TestDinucleotideMutations (0 ms) [----------] 4 tests from MutationEnumerationTest (4 ms total) [----------] Global test environment tear-down [==========] 158 tests from 29 test cases ran. (2466 ms total) [ PASSED ] 158 tests. make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' /usr/bin/make test-python make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[3]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.5.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.14 -I /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so 1.0.2 Python3 build is OK! make[3]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:383: /usr/bin/python3.15 setup.py install --root /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.5.1 PYTHON_INCLUDE = /usr/include/python3.15 NUMPY_INCLUDE = /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.5.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.15 -I /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib running build_py copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.15_pbconsensuscore/build copying build/Python/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.15_pbconsensuscore/build creating /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.15/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.15_pbconsensuscore/build/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.15/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.15_pbconsensuscore/build/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.15/dist-packages byte-compiling /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.15/dist-packages/ConsensusCore.py to ConsensusCore.cpython-315.pyc running install_egg_info running egg_info creating build/Python/ConsensusCore.egg-info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' adding license file 'LICENSES' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.15/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:383: /usr/bin/python3 setup.py install --root /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore WARNING: '' not a valid package name; please use only .-separated package names in setup.py running build ConsensusCore configuration summary ----------------------------------- BOOST = /usr/include/ SWIG = /usr/bin/swig SWIG_LIB = /usr/share/swig/4.5.1 PYTHON_INCLUDE = /usr/include/python3.14 NUMPY_INCLUDE = /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include DEBUG = CPP_STD = c++14 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Cpp.mk -j8 make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[2]: '/build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a' is up to date. make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make -f make/Python.mk make[2]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' mkdir -p /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python SWIG_LIB=/usr/share/swig/4.5.1 /usr/bin/swig -Wall -c++ -python -builtin -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -module ConsensusCore -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx src/SWIG/ConsensusCore.i /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Feature.hpp:20: Warning 309: private inheritance from base 'boost::shared_array< T >' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Matrix/DenseMatrix.hpp:28: Warning 309: private inheritance from base 'boost_dense_matrix' (ignored). /build/reproducible-path/consensuscore-1.1.1+dfsg/include/ConsensusCore/Poa/PoaConsensus.hpp:24: Warning 309: private inheritance from base 'noncopyable' (ignored). g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/consensuscore-1.1.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -O3 -O3 -DNDEBUG -g -fPIC -fno-omit-frame-pointer -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I/usr/include/ -Wl,-z,relro -Wl,-z,now -pthread -shared -Wl,-O1 -I/build/reproducible-path/consensuscore-1.1.1+dfsg/include -I/build/reproducible-path/consensuscore-1.1.1+dfsg/external -I /usr/include/python3.14 -I /usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/ConsensusCore_wrap.cxx /build/reproducible-path/consensuscore-1.1.1+dfsg/build/C++/libConsensusCore.a -o /build/reproducible-path/consensuscore-1.1.1+dfsg/build/Python/_ConsensusCore.so make[2]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib running build_py copying build/Python/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build copying build/Python/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build creating /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build/_ConsensusCore.so -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages copying /build/reproducible-path/consensuscore-1.1.1+dfsg/.pybuild/cpython3_3.14_pbconsensuscore/build/ConsensusCore.py -> /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages byte-compiling /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages/ConsensusCore.py to ConsensusCore.cpython-314.pyc running install_egg_info running egg_info writing build/Python/ConsensusCore.egg-info/PKG-INFO writing dependency_links to build/Python/ConsensusCore.egg-info/dependency_links.txt writing top-level names to build/Python/ConsensusCore.egg-info/top_level.txt reading manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' adding license file 'LICENSES' writing manifest file 'build/Python/ConsensusCore.egg-info/SOURCES.txt' Copying build/Python/ConsensusCore.egg-info to /build/reproducible-path/consensuscore-1.1.1+dfsg/debian/python3-pbconsensuscore/usr/lib/python3.14/dist-packages/ConsensusCore-1.0.2.egg-info Skipping SOURCES.txt running install_scripts dh_install -a -O--buildsystem=pybuild debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' find debian -name meson.build -delete make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild I: dh_python3 fs:534: renaming _ConsensusCore.so to _ConsensusCore.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:534: renaming _ConsensusCore.so to _ConsensusCore.cpython-315-loongarch64-linux-gnu.so debian/rules execute_after_dh_python3 make[1]: Entering directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_numpy3 Possible precedence problem between ! and pattern match (m//) at /usr/bin/dh_numpy3 line 68. dh_numpy3: skipping binary package libconsensuscore-dev which does not depend on the NumPy C ABI make[1]: Leaving directory '/build/reproducible-path/consensuscore-1.1.1+dfsg' dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-loongarch-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-loongarch-lp64d.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package libconsensuscore-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild dpkg-deb: building package 'libconsensuscore-dev' in '../libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb'. dpkg-deb: building package 'python3-pbconsensuscore' in '../python3-pbconsensuscore_1.1.1+dfsg-9+b3_loong64.deb'. dpkg-deb: building package 'python3-pbconsensuscore-dbgsym' in '../python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b3_loong64.deb'. dpkg-genbuildinfo --build=any -O../consensuscore_1.1.1+dfsg-9+b3_loong64.buildinfo dpkg-genchanges --build=any -O../consensuscore_1.1.1+dfsg-9+b3_loong64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-11-01T23:52:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Sun, 01 Nov 2026 23:52:36 +0000 | +------------------------------------------------------------------------------+ consensuscore_1.1.1+dfsg-9+b3_loong64.changes: ---------------------------------------------- Format: 1.8 Date: Fri, 09 Jan 2026 07:03:53 +0000 Source: consensuscore (1.1.1+dfsg-9) Binary: libconsensuscore-dev python3-pbconsensuscore python3-pbconsensuscore-dbgsym Binary-Only: yes Architecture: loong64 Version: 1.1.1+dfsg-9+b3 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: loong64 Build Daemon (loongson-conova-02) Description: libconsensuscore-dev - algorithms for PacBio multiple sequence consensus -- development python3-pbconsensuscore - algorithms for PacBio multiple sequence consensus -- Python 3 Changes: consensuscore (1.1.1+dfsg-9+b3) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for loong64; no source changes. * Rebuild with Python 3.15 as supported version Checksums-Sha1: b4193e34a93185291cbfaa52847a3721e4f701d0 7082 consensuscore_1.1.1+dfsg-9+b3_loong64.buildinfo 0ccdfbe63d6c0f5352b7161d10cf9eca72d31bef 2105868 libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb 8db4a64eb040ca9f825947937633395147edd779 17908960 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b3_loong64.deb 2f2aa5565268e5f3f9f0b3fd19a4e97777cc3284 711680 python3-pbconsensuscore_1.1.1+dfsg-9+b3_loong64.deb Checksums-Sha256: 5398b2a1c3e5196bc9b8450ab496b100c6cbaec8b6a4617f9f842dc02923f2ed 7082 consensuscore_1.1.1+dfsg-9+b3_loong64.buildinfo 5ece02631f391dd0e793066363a38316b412197124468015d91761d7a0d9149e 2105868 libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb c41e023bdf5013809722687c4fc9dc577459f78ccb19c98f4e6bd3eb194b7190 17908960 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b3_loong64.deb a9c5b705eda85f96e6d7a098a68e81fd1d5e8c8f4b3dc78a54adceeb4ccd37b8 711680 python3-pbconsensuscore_1.1.1+dfsg-9+b3_loong64.deb Files: b853b6ba9f9d9f318c336ec5edf57a92 7082 science optional consensuscore_1.1.1+dfsg-9+b3_loong64.buildinfo 8610379f932649c32a6e4432a2c3e27a 2105868 libdevel optional libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb f1d9870d9d9a3c6ed834844565fa030a 17908960 debug optional python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b3_loong64.deb 340a16fdc851045a4f2f06627227d312 711680 python optional python3-pbconsensuscore_1.1.1+dfsg-9+b3_loong64.deb +------------------------------------------------------------------------------+ | Buildinfo Sun, 01 Nov 2026 23:52:37 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: consensuscore (1.1.1+dfsg-9) Binary: libconsensuscore-dev python3-pbconsensuscore python3-pbconsensuscore-dbgsym Architecture: loong64 Version: 1.1.1+dfsg-9+b3 Binary-Only-Changes: consensuscore (1.1.1+dfsg-9+b3) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for loong64; no source changes. * Rebuild with Python 3.15 as supported version . -- loong64 Build Daemon (loongson-conova-02) Fri, 09 Jan 2026 07:03:53 +0000 Checksums-Md5: 8610379f932649c32a6e4432a2c3e27a 2105868 libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb f1d9870d9d9a3c6ed834844565fa030a 17908960 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b3_loong64.deb 340a16fdc851045a4f2f06627227d312 711680 python3-pbconsensuscore_1.1.1+dfsg-9+b3_loong64.deb Checksums-Sha1: 0ccdfbe63d6c0f5352b7161d10cf9eca72d31bef 2105868 libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb 8db4a64eb040ca9f825947937633395147edd779 17908960 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b3_loong64.deb 2f2aa5565268e5f3f9f0b3fd19a4e97777cc3284 711680 python3-pbconsensuscore_1.1.1+dfsg-9+b3_loong64.deb Checksums-Sha256: 5ece02631f391dd0e793066363a38316b412197124468015d91761d7a0d9149e 2105868 libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb c41e023bdf5013809722687c4fc9dc577459f78ccb19c98f4e6bd3eb194b7190 17908960 python3-pbconsensuscore-dbgsym_1.1.1+dfsg-9+b3_loong64.deb a9c5b705eda85f96e6d7a098a68e81fd1d5e8c8f4b3dc78a54adceeb4ccd37b8 711680 python3-pbconsensuscore_1.1.1+dfsg-9+b3_loong64.deb Build-Origin: Debian Build-Architecture: loong64 Build-Date: Sun, 01 Nov 2026 23:52:34 +0000 Build-Path: /build/reproducible-path/consensuscore-1.1.1+dfsg Installed-Build-Depends: architecture-properties (= 0.2.6+b2), autoconf (= 2.73-2), automake (= 1:1.19-3), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8+b1), bash (= 5.3-4), binutils (= 2.47.50.20261021-1), binutils-common (= 2.47.50.20261021-1), binutils-loongarch64-linux-gnu (= 2.47.50.20261021-1), bsdextrautils (= 2.42.4-1), build-essential (= 12.12+b1), bzip2 (= 1.0.8-6+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-4), cpp-16-loongarch64-linux-gnu (= 16.2.0-4), cpp-loongarch64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12+b1), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-exec (= 0.31+b2), dh-python (= 7.20261025), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1+b1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), file (= 1:5.47-4), findutils (= 4.11.0-3), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-4), g++-16-loongarch64-linux-gnu (= 16.2.0-4), g++-loongarch64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-4), gcc-16-base (= 16.2.0-4), gcc-16-loongarch64-linux-gnu (= 16.2.0-4), gcc-loongarch64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), grep (= 3.12-1+b1), groff-base (= 1.24.2-2), gzip (= 1.14-1), hostname (= 3.25+b1), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.4.0-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-4), libatomic1 (= 16.2.0-4), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b2), libbinutils (= 2.47.50.20261021-1), libblas3 (= 3.12.1-8), libblkid1 (= 2.42.4-1), libboost-dev (= 1.92.0.1), libboost-regex1.92-dev (= 1.92.0-4+b1), libboost-regex1.92.0 (= 1.92.0-4+b1), libboost1.92-dev (= 1.92.0-4+b1), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcap-ng0 (= 0.9.6-1+b1), libcc1-0 (= 16.2.0-4), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47.50.20261021-1), libctf0 (= 2.47.50.20261021-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdpkg-perl (= 1.23.11), libelf1t64 (= 0.196-1), libexpat1 (= 2.9.0-1), libexpat1-dev (= 2.9.0-1), libffi8 (= 3.8.0-2), libfile-stripnondeterminism-perl (= 1.15.1-1), libgcc-16-dev (= 16.2.0-4), libgcc-s1 (= 16.2.0-4), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgfortran5 (= 16.2.0-4), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgomp1 (= 16.2.0-4), libisl23 (= 0.28-1), libitm1 (= 16.2.0-4), libjansson4 (= 2.15.1-1), libjs-sphinxdoc (= 9.2.0-1), liblapack3 (= 3.12.1-8), liblsan0 (= 16.2.0-4), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmount1 (= 2.42.4-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libncursesw6 (= 6.6+20260608-2), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam0g (= 1.7.0-8), libpcre2-8-0 (= 10.48-3.1), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpython3-all-dev (= 3.14.8-1), libpython3-dev (= 3.14.8-1), libpython3-stdlib (= 3.14.8-1), libpython3.14 (= 3.14.10-1), libpython3.14-dev (= 3.14.10-1), libpython3.14-minimal (= 3.14.10-1), libpython3.14-stdlib (= 3.14.10-1), libpython3.15 (= 3.15.2-1), libpython3.15-dev (= 3.15.2-1), libpython3.15-minimal (= 3.15.2-1), libpython3.15-stdlib (= 3.15.2-1), libreadline8t64 (= 8.3-4), libselinux1 (= 3.11-2.1+b1), libsframe3 (= 2.47.50.20261021-1), libsimde-dev (= 0.8.4~rc3-5), libsmartcols1 (= 2.42.4-1), libsqlite3-0 (= 3.53.4-2), libssl3t64 (= 3.6.5-1), libstdc++-16-dev (= 16.2.0-4), libstdc++6 (= 16.2.0-4), libsystemd0 (= 262.1-1), libtinfo6 (= 6.6+20260608-2), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-4), libubsan1 (= 16.2.0-4), libuchardet0 (= 0.0.8-2+b2), libudev1 (= 262.1-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libxml2-16 (= 2.15.4+dfsg-1+b1), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3+b1), man-db (= 2.13.1-1+b1), mawk (= 1.3.4.20260302-2), media-types (= 14.0.0), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), netbase (= 6.6), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8.1-1), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), po-debconf (= 1.0.22), python3 (= 3.14.8-1), python3-all (= 3.14.8-1), python3-all-dev (= 3.14.8-1), python3-dev (= 3.14.8-1), python3-minimal (= 3.14.8-1), python3-numpy (= 1:2.4.6+ds-5+b1), python3-numpy-dev (= 1:2.4.6+ds-5+b1), python3-setuptools (= 84.2.0-1), python3.14 (= 3.14.10-1), python3.14-dev (= 3.14.10-1), python3.14-minimal (= 3.14.10-1), python3.15 (= 3.15.2-1), python3.15-dev (= 3.15.2-1), python3.15-minimal (= 3.15.2-1), readline-common (= 8.3-4), sed (= 4.9-3), sensible-utils (= 0.0.26), swig (= 4.5.1-2), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-6), tzdata (= 2026e-1), util-linux (= 2.42.4-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-4), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-4) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1767942233" +------------------------------------------------------------------------------+ | Package contents Sun, 01 Nov 2026 23:52:37 +0000 | +------------------------------------------------------------------------------+ libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb ------------------------------------------------ new Debian package, version 2.0. size 2105868 bytes: control archive=2224 bytes. 772 bytes, 18 lines control 4423 bytes, 54 lines md5sums Package: libconsensuscore-dev Source: consensuscore (1.1.1+dfsg-9) Version: 1.1.1+dfsg-9+b3 Architecture: loong64 Maintainer: Debian Med Packaging Team Installed-Size: 22873 Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- development files ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. 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./usr/include/ConsensusCore/Poa/RangeFinder.hpp drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/include/ConsensusCore/Quiver/ -rw-r--r-- root/root 531 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/Diploid.hpp -rw-r--r-- root/root 7338 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MultiReadMutationScorer.hpp -rw-r--r-- root/root 1178 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MutationEnumerator-inl.hpp -rw-r--r-- root/root 1776 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MutationEnumerator.hpp -rw-r--r-- root/root 1924 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/MutationScorer.hpp -rw-r--r-- root/root 5260 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/QuiverConfig.hpp -rw-r--r-- root/root 933 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/QuiverConsensus.hpp -rw-r--r-- root/root 6723 2026-01-09 07:03 ./usr/include/ConsensusCore/Quiver/QvEvaluator.hpp -rw-r--r-- root/root 773 2018-08-14 14:23 ./usr/include/ConsensusCore/Quiver/ReadScorer.hpp 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python3-pbconsensuscore python3-pbconsensuscore_1.1.1+dfsg-9+b3_loong64.deb --------------------------------------------------- new Debian package, version 2.0. size 711680 bytes: control archive=1436 bytes. 892 bytes, 18 lines control 995 bytes, 10 lines md5sums 305 bytes, 12 lines * postinst #!/bin/sh 443 bytes, 12 lines * prerm #!/bin/sh Package: python3-pbconsensuscore Source: consensuscore (1.1.1+dfsg-9) Version: 1.1.1+dfsg-9+b3 Architecture: loong64 Maintainer: Debian Med Packaging Team Installed-Size: 6553 Depends: python3 (<< 3.16), python3 (>= 3.14~), python3-numpy2-abi0 | python3-numpy-abi9, python3:any, libc6 (>= 2.36), libgcc-s1 (>= 4.5), libstdc++6 (>= 13.1) Section: python Priority: optional Homepage: https://github.com/PacificBiosciences/ConsensusCore Description: algorithms for PacBio multiple sequence consensus -- Python 3 ConsensusCore is a library of C++ algorithms for Pacific Biosciences multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET). This library primarily exists as the backend for GenomicConsensus, which implements Quiver. . This package is part of the SMRT Analysis suite. It provides the Python3 bindings. drwxr-xr-x root/root 0 2026-01-09 07:03 ./ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/python3/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/ -rw-r--r-- root/root 2354 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/dependency_links.txt -rw-r--r-- root/root 15 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore-1.0.2.egg-info/top_level.txt -rw-r--r-- root/root 442 2026-01-09 07:03 ./usr/lib/python3/dist-packages/ConsensusCore.py -rw-r--r-- root/root 3340808 2026-01-09 07:03 ./usr/lib/python3/dist-packages/_ConsensusCore.cpython-314-loongarch64-linux-gnu.so -rw-r--r-- root/root 3340808 2026-01-09 07:03 ./usr/lib/python3/dist-packages/_ConsensusCore.cpython-315-loongarch64-linux-gnu.so drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-01-09 07:03 ./usr/share/doc/python3-pbconsensuscore/ -rw-r--r-- root/root 821 2026-01-09 07:03 ./usr/share/doc/python3-pbconsensuscore/changelog.Debian.gz -rw-r--r-- root/root 245 2026-01-09 07:03 ./usr/share/doc/python3-pbconsensuscore/changelog.Debian.loong64.gz -rw-r--r-- root/root 420 2018-08-14 14:23 ./usr/share/doc/python3-pbconsensuscore/changelog.gz -rw-r--r-- root/root 5866 2026-01-09 07:01 ./usr/share/doc/python3-pbconsensuscore/copyright +------------------------------------------------------------------------------+ | Post Build Sun, 01 Nov 2026 23:52:40 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Sun, 01 Nov 2026 23:52:40 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Sun, 01 Nov 2026 23:52:45 +0000 | +------------------------------------------------------------------------------+ Build Architecture: loong64 Build Type: any Build-Space: 437032 Build-Time: 898 Distribution: unstable Host Architecture: loong64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderdvAoQlf/inputs/consensuscore_1.1.1+dfsg-9.dsc Machine Architecture: loong64 Package: consensuscore Package-Time: 920 Source-Version: 1.1.1+dfsg-9 Space: 437032 Status: successful Version: 1.1.1+dfsg-9+b3 -------------------------------------------------------------------------------- Finished at 2026-11-01T23:52:35Z Build needed 00:15:20, 437032k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderdvAoQlf/out checking libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb: size differs for libconsensuscore-dev_1.1.1+dfsg-9+b3_loong64.deb